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Conserved domains on  [gi|6755352|ref|NP_035418|]
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large ribosomal subunit protein uL23m isoform 2 [Mus musculus]

Protein Classification

uL23 family ribosomal protein( domain architecture ID 743)

uL23 family ribosomal protein such as bacteria 50S ribosomal protein L23, plant ribosomal protein L25, mitochondrial 39S ribosomal protein L23, and plastid 50S ribosomal protein L23

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L23 super family cl46680
Ribosomal protein L23;
42-105 5.55e-14

Ribosomal protein L23;


The actual alignment was detected with superfamily member pfam00276:

Pssm-ID: 459743  Cd Length: 86  Bit Score: 62.84  E-value: 5.55e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6755352     42 FRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTF 105
Cdd:pfam00276  24 FEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF--GRFVGRRSDWKKAIVTLAEGQKI 85
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
42-105 5.55e-14

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 62.84  E-value: 5.55e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6755352     42 FRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTF 105
Cdd:pfam00276  24 FEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF--GRFVGRRSDWKKAIVTLAEGQKI 85
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 34-107 8.84e-10

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 51.99  E-value: 8.84e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6755352   34 AQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTFTF 107
Cdd:COG0089  13 AEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRF--GRRVGKRSDWKKAIVTLAEGQKIDF 84
rplW PRK05738
50S ribosomal protein L23; Reviewed
 42-114 3.48e-09

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 50.47  E-value: 3.48e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6755352    42 FRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTFtfpDLFPEK 114
Cdd:PRK05738  25 FEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRF--GRRIGKRSDWKKAIVTLAEGQKI---DFFGGA 92
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
42-105 5.55e-14

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 62.84  E-value: 5.55e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6755352     42 FRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTF 105
Cdd:pfam00276  24 FEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF--GRFVGRRSDWKKAIVTLAEGQKI 85
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 34-107 8.84e-10

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 51.99  E-value: 8.84e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6755352   34 AQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTFTF 107
Cdd:COG0089  13 AEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRF--GRRVGKRSDWKKAIVTLAEGQKIDF 84
rplW PRK05738
50S ribosomal protein L23; Reviewed
 42-114 3.48e-09

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 50.47  E-value: 3.48e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6755352    42 FRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRdhKNVRIKKPDYKVAYVQLAHGQTFtfpDLFPEK 114
Cdd:PRK05738  25 FEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRF--GRRIGKRSDWKKAIVTLAEGQKI---DFFGGA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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