|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
28-322 |
1.23e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 105.76 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFtHAQNECIYSStmkNFD--IKYLNLETNQY 105
Cdd:COG2319 121 GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF-SPDGKLLASG---SDDgtVRLWDLATGKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 106 LRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIP--SLVPNCIAYDPSGLVFALGNPENfEIGLYNL 183
Cdd:COG2319 197 LRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTghSGSVRSVAFSPDGRLLASGSADG-TVRLWDL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 184 KkiqegPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAfpmreflDSGSACFTPDGE 263
Cdd:COG2319 276 A-----TGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTG-------AVRSVAFSPDGK 343
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 398364727 264 FVLGTDYDGRIAIWNHSDSISNKVLRpqgfipcvSHETCPRSIAFNPKYSMFVTA--DETV 322
Cdd:COG2319 344 TLASGSDDGTVRLWDLATGELLRTLT--------GHTGAVTSVAFSPDGRTLASGsaDGTV 396
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
28-322 |
2.56e-24 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 100.10 E-value: 2.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKyGCHSAIFTHAQNECIYSSTMkNFDIKYLNLETNQYLR 107
Cdd:cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASGSS-DKTIRLWDLETGECVR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 108 YFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIP---SLVpNCIAYDPSGLvFALGNPENFEIGLYNLK 184
Cdd:cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRghtDWV-NSVAFSPDGT-FVASSSQDGTIKLWDLR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 185 KIQEGpfliikindATF----SQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMrefldsgSACFTP 260
Cdd:cd00200 166 TGKCV---------ATLtghtGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN-------SVAFSP 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398364727 261 DGEFVLGTDYDGRIAIWNHSDSISNKVLRpqgfipcvSHETCPRSIAFNPKYSMFVTA--DETV 322
Cdd:cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSPDGKRLASGsaDGTI 285
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
102-141 |
7.88e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.30 E-value: 7.88e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 398364727 102 TNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWD 141
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
103-141 |
4.46e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 4.46e-05
10 20 30
....*....|....*....|....*....|....*....
gi 398364727 103 NQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWD 141
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
28-322 |
1.23e-25 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 105.76 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFtHAQNECIYSStmkNFD--IKYLNLETNQY 105
Cdd:COG2319 121 GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF-SPDGKLLASG---SDDgtVRLWDLATGKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 106 LRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIP--SLVPNCIAYDPSGLVFALGNPENfEIGLYNL 183
Cdd:COG2319 197 LRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTghSGSVRSVAFSPDGRLLASGSADG-TVRLWDL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 184 KkiqegPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAfpmreflDSGSACFTPDGE 263
Cdd:COG2319 276 A-----TGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTG-------AVRSVAFSPDGK 343
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 398364727 264 FVLGTDYDGRIAIWNHSDSISNKVLRpqgfipcvSHETCPRSIAFNPKYSMFVTA--DETV 322
Cdd:COG2319 344 TLASGSDDGTVRLWDLATGELLRTLT--------GHTGAVTSVAFSPDGRTLASGsaDGTV 396
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
28-322 |
2.56e-24 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 100.10 E-value: 2.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKyGCHSAIFTHAQNECIYSSTMkNFDIKYLNLETNQYLR 107
Cdd:cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASGSS-DKTIRLWDLETGECVR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 108 YFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIP---SLVpNCIAYDPSGLvFALGNPENFEIGLYNLK 184
Cdd:cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRghtDWV-NSVAFSPDGT-FVASSSQDGTIKLWDLR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 185 KIQEGpfliikindATF----SQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMrefldsgSACFTP 260
Cdd:cd00200 166 TGKCV---------ATLtghtGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN-------SVAFSP 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 398364727 261 DGEFVLGTDYDGRIAIWNHSDSISNKVLRpqgfipcvSHETCPRSIAFNPKYSMFVTA--DETV 322
Cdd:cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLS--------GHTNSVTSLAWSPDGKRLASGsaDGTI 285
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
28-278 |
3.99e-23 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 98.83 E-value: 3.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFThAQNECIYSSTMKNfDIKYLNLETNQYLR 107
Cdd:COG2319 163 GAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFS-PDGKLLASGSADG-TVRLWDLATGKLLR 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 108 YFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLV--PNCIAYDPSGLVFALGNPENfEIGLYNLKK 185
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSggVNSVAFSPDGKLLASGSDDG-TVRLWDLAT 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 186 IQEgpfliIKINDATFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMrefldsgSACFTPDGEFV 265
Cdd:COG2319 320 GKL-----LRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVT-------SVAFSPDGRTL 387
|
250
....*....|...
gi 398364727 266 LGTDYDGRIAIWN 278
Cdd:COG2319 388 ASGSADGTVRLWD 400
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
28-278 |
6.03e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 90.86 E-value: 6.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNecIYSSTMKNFDIKYLNLETNQYLR 107
Cdd:cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 108 YFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVP--NCIAYDPSGLVFALGNPENfEIGLYNLKK 185
Cdd:cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGevNSVAFSPDGEKLLSSSSDG-TIKLWDLST 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 186 IQEGPFLIIKINDATFsqwnkLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFpmrefldSGSACFTPDGEFV 265
Cdd:cd00200 209 GKCLGTLRGHENGVNS-----VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-------VTSLAWSPDGKRL 276
|
250
....*....|...
gi 398364727 266 LGTDYDGRIAIWN 278
Cdd:cd00200 277 ASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
95-322 |
1.91e-17 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 82.27 E-value: 1.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 95 IKYLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVII--PSLVPNCIAYDPSGLVFALGN 172
Cdd:COG2319 102 VRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLtgHSGAVTSVAFSPDGKLLASGS 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 173 PENfEIGLYNLKKIQegpfLIIKINDATFSQWNkLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMrefld 252
Cdd:COG2319 182 DDG-TVRLWDLATGK----LLRTLTGHTGAVRS-VAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVR----- 250
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 398364727 253 sgSACFTPDGEFVLGTDYDGRIAIWnhsDSISNKVLRPQGfipcvSHETCPRSIAFNPKYSMFVTA--DETV 322
Cdd:COG2319 251 --SVAFSPDGRLLASGSADGTVRLW---DLATGELLRTLT-----GHSGGVNSVAFSPDGKLLASGsdDGTV 312
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
98-322 |
1.01e-14 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 74.18 E-value: 1.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 98 LNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVII--PSLVPNCIAYDPSGLVFALGNpEN 175
Cdd:COG2319 63 LDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLtgHTGAVRSVAFSPDGKTLASGS-AD 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 176 FEIGLYNLKKIQegpfLIIKINDATFSQWNkLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMrefldsgS 255
Cdd:COG2319 142 GTVRLWDLATGK----LLRTLTGHSGAVTS-VAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVR-------S 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 398364727 256 ACFTPDGEFVLGTDYDGRIAIWNHSdsiSNKVLRPQGfipcvSHETCPRSIAFNPKYSMFVTA--DETV 322
Cdd:COG2319 210 VAFSPDGKLLASGSADGTVRLWDLA---TGKLLRTLT-----GHSGSVRSVAFSPDGRLLASGsaDGTV 270
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
106-318 |
2.74e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 68.90 E-value: 2.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 106 LRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQ--VIIPSLVPNCIAYDPSGLVFALGNPENFeIGLYNL 183
Cdd:cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLrtLKGHTGPVRDVAASADGTYLASGSSDKT-IRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 184 KKIQegpfLIIKINDATfSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELIGTRAFPMrefldsgSACFTPDGE 263
Cdd:cd00200 81 ETGE----CVRTLTGHT-SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-------SVAFSPDGT 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 398364727 264 FVLGTDYDGRIAIWNHSDSISNKVLRpqgfipcvSHETCPRSIAFNPKYSMFVTA 318
Cdd:cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLT--------GHTGEVNSVAFSPDGEKLLSS 195
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
28-143 |
5.82e-12 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 66.09 E-value: 5.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 28 GPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFtHAQNECIYSSTMKNfDIKYLNLETNQYLR 107
Cdd:COG2319 289 GGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAF-SPDGKTLASGSDDG-TVRLWDLATGELLR 366
|
90 100 110
....*....|....*....|....*....|....*.
gi 398364727 108 YFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLK 143
Cdd:COG2319 367 TLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
102-141 |
7.88e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.30 E-value: 7.88e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 398364727 102 TNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWD 141
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
103-141 |
4.46e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 4.46e-05
10 20 30
....*....|....*....|....*....|....*....
gi 398364727 103 NQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWD 141
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| Pgl |
COG2706 |
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism]; |
120-329 |
4.90e-03 |
|
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
Pssm-ID: 442025 [Multi-domain] Cd Length: 352 Bit Score: 38.35 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 120 KMNPVNDTFLSSSY----DESVRLWDL-----KISKPQVIIPSLVPNCIAYDPSG-LVFALGNPENFEIGLYNlkkiqeg 189
Cdd:COG2706 2 KRLLLSTFVYVGTYtsgeSEGIYVFRLdtatgELTLLGLVAALGNPSFLALSPDGrFLYAVNEVDDGGVSAFR------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 190 pfliIKINDATFSQWNK----------LEFSNNGKYLLV----GSSIGKHLIfdAFTGQ-----QLFELIGTRAFPMREf 250
Cdd:COG2706 75 ----IDPADGTLTLLNTvssggaspchLSVDPDGRFLFVanygGGSVSVFPI--DADGSlgepvQVIQHEGSGPNPERQ- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364727 251 ldSGSAC----FTPDGEFV----LGTDydgRIAIWNHSDsiSNKVLRPQGFIPcVSHETCPRSIAFNPKYSMFVTADE-- 320
Cdd:COG2706 148 --EGPHAhsvvFDPDGRFLyvpdLGTD---RIYVYRLDP--ATGKLPEPPEVS-LPPGSGPRHLAFHPNGRFAYVINEld 219
|
250
....*....|
gi 398364727 321 -TVDFYVYDE 329
Cdd:COG2706 220 sTVSVYAYDA 229
|
|
|