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Conserved domains on  [gi|6322216|ref|NP_012291|]
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Mnd2p [Saccharomyces cerevisiae S288C]

Protein Classification

Apc15p domain-containing protein( domain architecture ID 10530785)

Apc15p domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Apc15p pfam05841
Apc15p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 8-136 2.17e-32

Apc15p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc15p.


:

Pssm-ID: 399091  Cd Length: 118  Bit Score: 117.54  E-value: 2.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322216      8 ISLFNDIRKDQNSAGAKHERYNMRDLRSKKNQHVNGIDDYEddsldRFIRRKKSRVVKYIPSLSAYNVFNEFPYYPTsas 87
Cdd:pfam05841   1 HSLWYDIKRNPLLSPNSSNTSNGRSLRNTIGNNGNNNNGKE-----RNEDQRRHRRNGYAPPLSAYNAIEESPYYPR--- 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 6322216     88 qllDGKLDEFLMLSEQYKSRLPKIRKLGWNRFKPIGINKTMYELEMLRS 136
Cdd:pfam05841  73 ---GGKLDRLRMREEQMERRLNAIRNLGSNWLKPIGVNKTMFQIREERR 118
 
Name Accession Description Interval E-value
Apc15p pfam05841
Apc15p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 8-136 2.17e-32

Apc15p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc15p.


Pssm-ID: 399091  Cd Length: 118  Bit Score: 117.54  E-value: 2.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322216      8 ISLFNDIRKDQNSAGAKHERYNMRDLRSKKNQHVNGIDDYEddsldRFIRRKKSRVVKYIPSLSAYNVFNEFPYYPTsas 87
Cdd:pfam05841   1 HSLWYDIKRNPLLSPNSSNTSNGRSLRNTIGNNGNNNNGKE-----RNEDQRRHRRNGYAPPLSAYNAIEESPYYPR--- 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 6322216     88 qllDGKLDEFLMLSEQYKSRLPKIRKLGWNRFKPIGINKTMYELEMLRS 136
Cdd:pfam05841  73 ---GGKLDRLRMREEQMERRLNAIRNLGSNWLKPIGVNKTMFQIREERR 118
 
Name Accession Description Interval E-value
Apc15p pfam05841
Apc15p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 8-136 2.17e-32

Apc15p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc15p.


Pssm-ID: 399091  Cd Length: 118  Bit Score: 117.54  E-value: 2.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322216      8 ISLFNDIRKDQNSAGAKHERYNMRDLRSKKNQHVNGIDDYEddsldRFIRRKKSRVVKYIPSLSAYNVFNEFPYYPTsas 87
Cdd:pfam05841   1 HSLWYDIKRNPLLSPNSSNTSNGRSLRNTIGNNGNNNNGKE-----RNEDQRRHRRNGYAPPLSAYNAIEESPYYPR--- 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 6322216     88 qllDGKLDEFLMLSEQYKSRLPKIRKLGWNRFKPIGINKTMYELEMLRS 136
Cdd:pfam05841  73 ---GGKLDRLRMREEQMERRLNAIRNLGSNWLKPIGVNKTMFQIREERR 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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