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Conserved domains on  [gi|398364455|ref|NP_012235|]
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Ema17p [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4668 super family cl24316
Domain of unknown function (DUF4668); This family of proteins is found in eukaryotes. Proteins ...
 1-122 2.19e-35

Domain of unknown function (DUF4668); This family of proteins is found in eukaryotes. Proteins in this family are typically between 142 and 211 amino acids in length.


The actual alignment was detected with superfamily member pfam15701:

Pssm-ID: 406192  Cd Length: 162  Bit Score: 119.89  E-value: 2.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364455    1 MRLIFIAKMLQYSFLPfsPFNLLNFDNS----ISVSWFI---TYSVIVSIWGFAVWIEGAYRNKINLQLPRCTKIKCSRY 73
Cdd:pfam15701   4 MRLVFILKMFQYTFVP--SFGLLIEKYPkvfdIKSIWIIlgaVYSAIVSIWGFLVWKERGYRNKNNLKPKRCSKIKCSRC 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 398364455   74 NTRIKSPKWFNCKNWMHFFLLYLFLTASNLIVQLAYfskeMCSQGINVP 122
Cdd:pfam15701  82 DARKKHPKWFKYKYWLLFLLLYVSLVYSNTKIQFFF----KTDQGIHLH 126
 
Name Accession Description Interval E-value
DUF4668 pfam15701
Domain of unknown function (DUF4668); This family of proteins is found in eukaryotes. Proteins ...
 1-122 2.19e-35

Domain of unknown function (DUF4668); This family of proteins is found in eukaryotes. Proteins in this family are typically between 142 and 211 amino acids in length.


Pssm-ID: 406192  Cd Length: 162  Bit Score: 119.89  E-value: 2.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364455    1 MRLIFIAKMLQYSFLPfsPFNLLNFDNS----ISVSWFI---TYSVIVSIWGFAVWIEGAYRNKINLQLPRCTKIKCSRY 73
Cdd:pfam15701   4 MRLVFILKMFQYTFVP--SFGLLIEKYPkvfdIKSIWIIlgaVYSAIVSIWGFLVWKERGYRNKNNLKPKRCSKIKCSRC 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 398364455   74 NTRIKSPKWFNCKNWMHFFLLYLFLTASNLIVQLAYfskeMCSQGINVP 122
Cdd:pfam15701  82 DARKKHPKWFKYKYWLLFLLLYVSLVYSNTKIQFFF----KTDQGIHLH 126
 
Name Accession Description Interval E-value
DUF4668 pfam15701
Domain of unknown function (DUF4668); This family of proteins is found in eukaryotes. Proteins ...
 1-122 2.19e-35

Domain of unknown function (DUF4668); This family of proteins is found in eukaryotes. Proteins in this family are typically between 142 and 211 amino acids in length.


Pssm-ID: 406192  Cd Length: 162  Bit Score: 119.89  E-value: 2.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398364455    1 MRLIFIAKMLQYSFLPfsPFNLLNFDNS----ISVSWFI---TYSVIVSIWGFAVWIEGAYRNKINLQLPRCTKIKCSRY 73
Cdd:pfam15701   4 MRLVFILKMFQYTFVP--SFGLLIEKYPkvfdIKSIWIIlgaVYSAIVSIWGFLVWKERGYRNKNNLKPKRCSKIKCSRC 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 398364455   74 NTRIKSPKWFNCKNWMHFFLLYLFLTASNLIVQLAYfskeMCSQGINVP 122
Cdd:pfam15701  82 DARKKHPKWFKYKYWLLFLLLYVSLVYSNTKIQFFF----KTDQGIHLH 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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