|
Name |
Accession |
Description |
Interval |
E-value |
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
107-445 |
5.20e-91 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 276.48 E-value: 5.20e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLSSRPA---YEKLG 183
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLPKryhLEKAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 184 ITQSNIFTVSCNDLINQEHIINVQLPILLERskGSIKLVIIDSISHHLRVELQNKSfRESQENKNYLDRMAEKLQILAHD 263
Cdd:cd19491 81 NFLDNIFVEHVADLETLEHCLNYQLPALLER--GPIRLVVIDSIAALFRSEFDTSR-SDLVERAKYLRRLADHLKRLADK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 264 YSLSVVVANQVGDKPLANSPVAHRTYVTDYdyqlgwlvgwknstilyrqmnsllgassnndeilsddedymliervmstv 343
Cdd:cd19491 158 YNLAVVVVNQVTDRFDSSSDASGLGVLDYL-------------------------------------------------- 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 344 ndrnydffskkkppiienktvernssSPISRQSKKRKFDYRVPNLGLTWSNHVSTRILLQKSFKASTiiqrgeahlykgg 423
Cdd:cd19491 188 --------------------------SQFSSFSGGVSGNRKVPALGLTWANLVNTRLMLSRTPKRIT------------- 228
|
330 340
....*....|....*....|..
gi 6320207 424 DSASFWQVKRTMKVVYSTFAKP 445
Cdd:cd19491 229 DSSAASISVRRLEVVFSPHLPP 250
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
99-278 |
2.80e-36 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 134.35 E-value: 2.80e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 99 CFTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLssrpa 178
Cdd:pfam08423 18 QITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERLVAIA----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 179 yEKLGITQSNIF-TVSCNDLINQEHIIN--VQLPILLERSKgsIKLVIIDSISHHLRVELQNKSfrESQENKNYLDRMAE 255
Cdd:pfam08423 93 -ERYGLDPEDVLdNVAYARAYNSEHQMQllQQAAAMMSESR--FALLIVDSATALYRTDFSGRG--ELAERQQHLAKFLR 167
|
170 180
....*....|....*....|...
gi 6320207 256 KLQILAHDYSLSVVVANQVGDKP 278
Cdd:pfam08423 168 TLQRLADEFGVAVVITNQVVAQV 190
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
120-277 |
4.48e-32 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 120.41 E-value: 4.48e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 120 ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLptqrlesmlssrpayeklgitqsNIFTVSCNDLIN 199
Cdd:cd19492 3 ITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF-----------------------NIHYFRVHDYVE 59
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6320207 200 QEHIINvQLPILLERSKGsIKLVIIDSISHHLRVELQNKSFResqenKNYLDRMAEKLQILAHDYSLSVVVANQVGDK 277
Cdd:cd19492 60 LLALIN-SLPKFLEDHPK-VKLIVVDSIAFPFRHDFDDLAQR-----TRLLNGLAQLLHSLARQHNLAVVLTNQVTTK 130
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
101-278 |
1.04e-29 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 117.92 E-value: 1.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLSSRPAYE 180
Cdd:TIGR02236 78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDP 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGItqSNIFTVSCndlINQEH--IINVQLPILLERSKGSIKLVIIDSISHHLRVELQNKSFRESQENKnyLDRMAEKLQ 258
Cdd:TIGR02236 158 DEVL--KNIYVARA---YNSNHqmLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQK--LNKHLHDLL 230
|
170 180
....*....|....*....|
gi 6320207 259 ILAHDYSLSVVVANQVGDKP 278
Cdd:TIGR02236 231 RLADLYNAAVVVTNQVMARP 250
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
101-278 |
8.48e-29 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 115.36 E-value: 8.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLssrpayE 180
Cdd:PRK04301 85 TTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA------E 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGI----TQSNIFTVSCndlINQEHIInvqlpILLERSKG------SIKLVIIDSISHHLRVELqnkSFRES-QENKNY 249
Cdd:PRK04301 159 ALGLdpdeVLDNIHVARA---YNSDHQM-----LLAEKAEElikegeNIKLVIVDSLTAHFRAEY---VGRGNlAERQQK 227
|
170 180
....*....|....*....|....*....
gi 6320207 250 LDRMAEKLQILAHDYSLSVVVANQVGDKP 278
Cdd:PRK04301 228 LNKHLHDLLRLADLYNAAVVVTNQVMARP 256
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
120-277 |
6.22e-28 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 109.36 E-value: 6.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 120 ITEIFGESSTGKSQLLMQLALSVQLsepaggLGGKCVYITTEGDLPTQRLESMLSSRPAYE-KLGITQSNIFTVSCNDLI 198
Cdd:cd01393 3 ITEIYGPPGSGKTQLALQLAANALL------LGGGVVWIDTEGAFPPSRLVQILEASPSSElELAEALSRLLYFRPPDTL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 199 NQEHIINVQLPILLerSKGSIKLVIIDSISHHLRVELQNKSFRESQENK--NYLDRMAEKLQILAHDYSLSVVVANQVGD 276
Cdd:cd01393 77 AHLLALDSLPESLF--PPPNTSLVVVDSVSALFRKAFPRGGDGDSSSSLraRLLSQLARALQKLAAQFNLAVVVTNQVTT 154
|
.
gi 6320207 277 K 277
Cdd:cd01393 155 K 155
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
101-278 |
2.48e-27 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 109.38 E-value: 2.48e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLssrpayE 180
Cdd:cd19515 2 STGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMA------K 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGI----TQSNIFTVSCndlINQEHIInvqlpILLERSKG------SIKLVIIDSISHHLRVE-LQNKSFRESQENkny 249
Cdd:cd19515 76 ALGLdpdeVLDNIYVARA---YNSNHQM-----LLVEKAEDlikegnNIKLLIVDSLTSHFRAEyVGRGTLAERQQK--- 144
|
170 180
....*....|....*....|....*....
gi 6320207 250 LDRMAEKLQILAHDYSLSVVVANQVGDKP 278
Cdd:cd19515 145 LNKHLHDLHRLADLYNIAVLVTNQVMAKP 173
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
100-286 |
1.36e-26 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 107.02 E-value: 1.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLssrpay 179
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 180 EKLGITQSNIF-TVSCNDLINQEHiinvQLPILLERS----KGSIKLVIIDSISHHLRVELQNKSfrESQENKNYLDRMA 254
Cdd:cd19513 75 ERYGLNGEDVLdNVAYARAYNTDH----QMQLLIQASammaESRYALLIVDSATALYRTDYSGRG--ELSARQMHLAKFL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 6320207 255 EKLQILAHDYSLSVVVANQV-----------GD--KPLANSPVAH 286
Cdd:cd19513 149 RMLQRLADEFGVAVVITNQVvaqvdgaamfaGDpkKPIGGNIMAH 193
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
101-278 |
2.02e-26 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 106.85 E-value: 2.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLesmlssRPAYE 180
Cdd:cd01123 2 TTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERL------RAIAQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGITQSNIF-TVSCNDLINQEHIINVQLPILLERSKGSIKLVIIDSISHHLRVELQNKSfrESQENKNYLDRMAEKLQI 259
Cdd:cd01123 76 RFGLDPDDVLdNVAYARAFNSDHQTQLLDQAAAMMVESRFKLLIVDSATALYRTDYSGRG--ELSARQMHLAKFLRMLQR 153
|
170
....*....|....*....
gi 6320207 260 LAHDYSLSVVVANQVGDKP 278
Cdd:cd01123 154 LADEFGVAVVVTNQVVAQV 172
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
35-282 |
7.33e-26 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 107.78 E-value: 7.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 35 LDAVRQNGVCVVDFLTLTP-KELARLIQRSINEVfrfqqllvheynEKYLEICEKNSISP-DNGPEC---------FTTA 103
Cdd:PTZ00035 36 IKKLKEAGICTVESVAYATkKDLCNIKGISEAKV------------EKIKEAASKLVPMGfISATEYlearkniirITTG 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 104 DVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLEsmlssrPAYEKLG 183
Cdd:PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV------QIAERFG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 184 ----ITQSNIFTVSCndlINQEHiinvQLPILLERSKGSIK----LVIIDSISHHLRVELqnkSFR-ESQENKNYLDRMA 254
Cdd:PTZ00035 178 ldpeDVLDNIAYARA---YNHEH----QMQLLSQAAAKMAEerfaLLIVDSATALFRVDY---SGRgELAERQQHLGKFL 247
|
250 260
....*....|....*....|....*...
gi 6320207 255 EKLQILAHDYSLSVVVANQVGDKPLANS 282
Cdd:PTZ00035 248 RALQKLADEFNVAVVITNQVMADVDGAS 275
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
101-280 |
1.33e-24 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 101.66 E-value: 1.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLesmlssRPAYE 180
Cdd:cd19514 2 STGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRI------RPIAE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGITQS----NIFTVSCndlINQEHiinvQLPILLERSK-----GSIKLVIIDSISHHLRVELQNKSfrESQENKNYLD 251
Cdd:cd19514 76 RFGVDHDavldNILYARA---YTSEH----QMELLDYVAAkfheeAVFRLLIIDSIMALFRVDFSGRG--ELAERQQKLA 146
|
170 180
....*....|....*....|....*....
gi 6320207 252 RMAEKLQILAHDYSLSVVVANQVGDKPLA 280
Cdd:cd19514 147 QMLSRLQKISEEYNVAVFITNQVTADPGA 175
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
108-274 |
1.27e-23 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 98.55 E-value: 1.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 108 DELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLSSRPAYEKLGITQS 187
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAEARFPEAFSGFMEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 188 N-----------IFTVSCNDLINQehiinvQLPILLE--RSKGsIKLVIIDSISHHLRVELQNKSfRESQENKNYLDRMA 254
Cdd:cd19493 81 NeraeemlkrvaVVRVTTLAQLLE------RLPNLEEhiLSSG-VRLVVIDSIAALVRREFGGSD-GEVTERHNALAREA 152
|
170 180
....*....|....*....|
gi 6320207 255 EKLQILAHDYSLSVVVANQV 274
Cdd:cd19493 153 SSLKRLAEEFRIAVLVTNQA 172
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
99-286 |
3.28e-23 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 99.80 E-value: 3.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 99 CFTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLssrpa 178
Cdd:TIGR02239 77 QLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA----- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 179 yEKLGITQSNIF-TVSCNDLINQEHiinvQLPILLERS----KGSIKLVIIDSISHHLRVELQNKSfrESQENKNYLDRM 253
Cdd:TIGR02239 152 -ERYGLNPEDVLdNVAYARAYNTDH----QLQLLQQAAammsESRFALLIVDSATALYRTDFSGRG--ELSARQMHLARF 224
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 6320207 254 AEKLQILAHDYSLSVVVANQV------------GD--KPLANSPVAH 286
Cdd:TIGR02239 225 LRSLQRLADEFGVAVVITNQVvaqvdgagsmfaGDpkKPIGGNIMAH 271
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
101-278 |
6.93e-23 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 99.08 E-value: 6.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLEsmlssrPAYE 180
Cdd:PLN03187 109 TTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV------PIAE 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGITQ----SNI-----FTVscndlinqEHIINVQLPILLERSKGSIKLVIIDSISHHLRVELQNKSfrESQENKNYLD 251
Cdd:PLN03187 183 RFGMDAdavlDNIiyaraYTY--------EHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRG--ELAERQQKLA 252
|
170 180
....*....|....*....|....*..
gi 6320207 252 RMAEKLQILAHDYSLSVVVANQVGDKP 278
Cdd:PLN03187 253 QMLSRLTKIAEEFNVAVYMTNQVIADP 279
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
107-288 |
1.18e-22 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 95.56 E-value: 1.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSvqlsepAGGLGGKCVYITTEGdLPTQRLESMLSSRPAyeklgITQ 186
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVN------AARQGKKVVYIDTEG-LSPERFKQIAEDRPE-----RAL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 187 SNIFTVSCNDLINQEHIINVQLPILlerSKGSIKLVIIDSISHHLRVELQNksfrESQENKNYLDRMAEKLQILAHDYSL 266
Cdd:TIGR02237 69 SNFIVFEVFDFDEQGVAIQKTSKFI---DRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNL 141
|
170 180
....*....|....*....|....*....
gi 6320207 267 SVVVANQV-------GDKPLANSPVAHRT 288
Cdd:TIGR02237 142 AVVITNQVytdvnngTLRPLGGHLLEHWS 170
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
101-285 |
1.62e-22 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 98.27 E-value: 1.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLESMLssrpayE 180
Cdd:PLN03186 106 TTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA------E 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGITQSNIF-TVSCNDLINQEHiinvQLPILLE----RSKGSIKLVIIDSISHHLRVELQNKSfrESQENKNYLDRMAE 255
Cdd:PLN03186 180 RFGLNGADVLeNVAYARAYNTDH----QSELLLEaasmMAETRFALMIVDSATALYRTEFSGRG--ELSARQMHLGKFLR 253
|
170 180 190
....*....|....*....|....*....|
gi 6320207 256 KLQILAHDYSLSVVVANQVGDKPLANSPVA 285
Cdd:PLN03186 254 SLQRLADEFGVAVVITNQVVAQVDGSAFFA 283
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
101-280 |
2.08e-22 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 97.16 E-value: 2.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 101 TTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLesmlssRPAYE 180
Cdd:TIGR02238 79 TTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI------RAIAE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 181 KLGITQSNIF-TVSCNDLINQEHIINVQLPILLERSKGSIKLVIIDSISHHLRVELQNKSfrESQENKNYLDRMAEKLQI 259
Cdd:TIGR02238 153 RFGVDPDAVLdNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRG--ELSERQQKLAQMLSRLNK 230
|
170 180
....*....|....*....|.
gi 6320207 260 LAHDYSLSVVVANQVGDKPLA 280
Cdd:TIGR02238 231 ISEEFNVAVFVTNQVQADPGA 251
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
108-288 |
9.57e-22 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 93.39 E-value: 9.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 108 DELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSepagglGGKCVYITTEGdLPTQRLESMLSSRPayEKLgitQS 187
Cdd:PRK09361 13 DELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN------GKKVIYIDTEG-LSPERFKQIAGEDF--EEL---LS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 188 N--IFTVScnDLINQEHIINVQLPILLErskgSIKLVIIDSISHHLRVELqnksfRESQENKNYLDRMAEKLQIL---AH 262
Cdd:PRK09361 81 NiiIFEPS--SFEEQSEAIRKAEKLAKE----NVGLIVLDSATSLYRLEL-----EDEEDNSKLNRELGRQLTHLlklAR 149
|
170 180 190
....*....|....*....|....*....|...
gi 6320207 263 DYSLSVVVANQV-------GDKPLANSPVAHRT 288
Cdd:PRK09361 150 KHDLAVVITNQVysdidsdGLRPLGGHTLEHWS 182
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
112-274 |
3.53e-20 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 88.46 E-value: 3.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 112 GGGIFTHGITEIFGESSTGKSQLLMQLALSVqlsepAGGLGGKCVYITTEGDLPTQRLESMLSSRPAYEKLG------IT 185
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANV-----ASRSGQNVLYIDTKSSFSARRLAQILKSRAQDAEEIdkalqrIR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 186 QSNIFTVScnDLINQEHIINVQLPILLERSKGSIKLVIIDSISHHLRVELQNKSfreSQENKNYLDRMAEKLQILAHDYS 265
Cdd:cd19489 76 VVRVFDPY--ELLDLLEELRNTLSQQQENLYSRLKLVIIDSLSALISPLLGGSK---HSEGHALLASLARLLKKLAAEYQ 150
|
....*....
gi 6320207 266 LSVVVANQV 274
Cdd:cd19489 151 IAVLVTNLT 159
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
106-288 |
1.90e-19 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 86.60 E-value: 1.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 106 AMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVqlsepaGGLGGKCVYITTEGdLPTQRLESMLSSRPayEKLGit 185
Cdd:cd01394 7 SLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQIAGERF--ESIA-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 186 qSNIFTVSCNDLINQEHIINVQLPILlerSKGSIKLVIIDSISHHLRVELQNksfreSQENKNYLDRMAEKLQILAHDYS 265
Cdd:cd01394 76 -SNIIVFEPYSFDEQGVAIQEAEKLL---KSDKVDLVVVDSATALYRLELGD-----DSEANRELSRQMSKLLSIARKYD 146
|
170 180 190
....*....|....*....|....*....|
gi 6320207 266 LSVVVANQV-------GDKPLANSPVAHRT 288
Cdd:cd01394 147 IPVVITNQVysdidddRLKPVGGTLLEHWS 176
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
107-227 |
4.20e-09 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 57.16 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVqlsepaGGLGGKCVYITTEgdlptqrlESM--LSSRPayEKLGI 184
Cdd:cd01121 71 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL------AQRGGKVLYVSGE--------ESLsqIKLRA--ERLGL 134
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 6320207 185 TQSNIFTVSCNDLinqEHIINvqlpiLLERSKgsIKLVIIDSI 227
Cdd:cd01121 135 GSDNLYLLAETNL---EAILA-----EIEELK--PSLVVIDSI 167
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
98-226 |
5.20e-09 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 57.49 E-value: 5.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 98 ECFTTADVAMDELLG-GGIFTHGITEIFGESSTGKSQLLMQLALSVQLsepaggLGGKCVYITTEGDLptqrlesmlssR 176
Cdd:COG0468 42 EVISTGSLALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------AGGIAAFIDAEHAL-----------D 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 6320207 177 PAY-EKLGITQSNIftvscndLINQ----EHiinvQLPIL--LERSkGSIKLVIIDS 226
Cdd:COG0468 105 PEYaKKLGVDIDNL-------LVSQpdtgEQ----ALEIAetLVRS-GAVDLIVVDS 149
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
120-273 |
8.34e-09 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 55.82 E-value: 8.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 120 ITEIFGESSTGKSQLLMQLALSVQLS-----EPAGGLGGKCVYITTEGDLPTQRLESMLSSR------PAYEKLGITQSN 188
Cdd:cd19490 3 VIEITGPSGSGKTELLYHLAARCILPsswggVPLGGLEAAVVFIDTDGRFDILRLRSILEARiraaiqAANSSDDEEDVE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 189 IFTVSCndlINQEHIINVQ-----------LPILLERS--KGSIKLVIIDSISHHLRVELQNK--SFRESQENKNYLDRM 253
Cdd:cd19490 83 EIAREC---LQRLHIFRCHsslqllatllsLENYLLSLsaNPELGLLLIDSISAFYWQDRFSAelARAAPLLQEAALRAI 159
|
170 180
....*....|....*....|
gi 6320207 254 AEKLQILAHDYSLSVVVANQ 273
Cdd:cd19490 160 LRELRRLRRRFQLVVIATKQ 179
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
110-275 |
2.60e-08 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 53.92 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 110 LLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGL-----GGKCVYITTEGDLPT--QRLESMLSSRPAYEKL 182
Cdd:pfam13481 25 LIKGLLPAGGLGLLAGAPGTGKTTLALDLAAAVATGKPWLGGprvpeQGKVLYVSAEGPADElrRRLRAAGADLDLPARL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 183 GITqSNIFTVSCNDLINQEHIINVQLPILLERSK--GSIKLVIIDSIShhlrvelqnkSFRESQENKNY-LDRMAEKLQI 259
Cdd:pfam13481 105 LFL-SLVESLPLFFLDRGGPLLDADVDALEAALEevEDPDLVVIDPLA----------RALGGDENSNSdVGRLVKALDR 173
|
170
....*....|....*.
gi 6320207 260 LAHDYSLSVVVANQVG 275
Cdd:pfam13481 174 LARRTGATVLLVHHVG 189
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
108-270 |
2.88e-08 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 55.29 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 108 DELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGL---GGKCVYITTEGDLPTQ--RLESMLSSRPAYekL 182
Cdd:COG3598 3 RWLVPGLLPEGGVTLLAGPPGTGKSFLALQLAAAVAAGGPWLGRrvpPGKVLYLAAEDDRGELrrRLKALGADLGLP--F 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 183 GITQSNIFTVSCndlinQEHIINVQLPILLERS--KGSIKLVIIDSIShhlrvelqnkSFRESQENKN-YLDRMAEKLQI 259
Cdd:COG3598 81 ADLDGRLRLLSL-----AGDLDDTDDLEALERAieEEGPDLVVIDPLA----------RVFGGDENDAeEMRAFLNPLDR 145
|
170
....*....|.
gi 6320207 260 LAHDYSLSVVV 270
Cdd:COG3598 146 LAERTGAAVLL 156
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
107-242 |
5.38e-08 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 53.38 E-value: 5.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLAlsvqlsepAGGL--GGKCVYITTEGDLPT--QRLESM-LSSRPAYEK 181
Cdd:COG0467 9 LDELLGGGLPRGSSTLLSGPPGTGKTTLALQFL--------AEGLrrGEKGLYVSFEESPEQllRRAESLgLDLEEYIES 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6320207 182 LGITQSNIFTVSCNDLINqEHIInvQLPILLERSKgsIKLVIIDSISHHLRVELQNKSFRE 242
Cdd:COG0467 81 GLLRIIDLSPEELGLDLE-ELLA--RLREAVEEFG--AKRVVIDSLSGLLLALPDPERLRE 136
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
98-228 |
1.78e-06 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 49.32 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 98 ECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQlsepagGLGGKCVYITTEGDLPtqrlesmlssr 176
Cdd:pfam00154 31 ETISTGSLALDIALGIGGYPKGrIIEIYGPESSGKTTLALHAIAEAQ------KAGGTAAFIDAEHALD----------- 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 6320207 177 PAY-EKLGITQSNIftvscndLINQEHIINVQLPIL--LERSkGSIKLVIIDSIS 228
Cdd:pfam00154 94 PVYaKKLGVDIDNL-------LVSQPDTGEQALEIAdmLVRS-GAIDLIVVDSVA 140
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
98-228 |
5.30e-05 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 44.47 E-value: 5.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 98 ECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQlsepagGLGGKCVYITTEGDLPtqrlesmlssr 176
Cdd:cd00983 3 EVIPTGSLSLDIALGIGGLPRGrIIEIYGPESSGKTTLALHAIAEAQ------KLGGTAAFIDAEHALD----------- 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 6320207 177 PAY-EKLGITQSNIftvscndLINQEHIINVQLPILLE--RSkGSIKLVIIDSIS 228
Cdd:cd00983 66 PEYaKKLGVDIDNL-------LVSQPDTGEQALEIADTliRS-GAVDLIVVDSVA 112
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
108-242 |
1.17e-04 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 43.41 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 108 DELLGGGIFTHGITEIFGESSTGKSQLLMQLALSvQLSEpagglGGKCVYITTE---GDLpTQRLESMLSSRPAYEKLG- 183
Cdd:cd01124 9 DELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYA-GAKN-----GEPGLFFTFEespERL-LRNAKSFGWDFDEMEDEGk 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6320207 184 ---ITQSNIFTV--SCNDLINQ-EHIINvqlpillersKGSIKLVIIDSISHHLRVELQNKSFRE 242
Cdd:cd01124 82 liiVDAPPTEAGrfSLDELLSRiLSIIK----------SFKAKRVVIDSLSGLRRAKEDQMRARR 136
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
117-261 |
2.23e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.59 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 117 THGITEIFGESSTGKSQLLMQLALSVQLSepagglGGKCVYITTEGDLPTQRLEsmlssrpayeklgitQSNIFTVSCND 196
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP------GGGVIYIDGEDILEEVLDQ---------------LLLIIVGGKKA 59
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6320207 197 LINQEHIINvqlpILLER-SKGSIKLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILA 261
Cdd:smart00382 60 SGSGELRLR----LALALaRKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| RepA_RSF1010_like |
cd01125 |
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
119-228 |
2.87e-04 |
|
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent).
Pssm-ID: 410870 Cd Length: 238 Bit Score: 42.37 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 119 GITEIFGESSTGKSQLLMQLALSVQLSEPAGGLG----GKCVYITTEGDLP--TQRLESMLSSRPAYEKLGITQSNIFTV 192
Cdd:cd01125 2 TLGMLVGPPGSGKSFLALDLAVAVATGRDWLGERrvkqGRVVYLAAEDPRDglRRRLKAIGAHLGDEDAALAENLVIENL 81
|
90 100 110
....*....|....*....|....*....|....*.
gi 6320207 193 SCNDLINQEHIINVQlpiLLERSKGSIKLVIIDSIS 228
Cdd:cd01125 82 RGKPVSIDAEAPELE---RIIEELEGVRLIIIDTLA 114
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
107-174 |
3.83e-03 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 38.77 E-value: 3.83e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6320207 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALsvqlsEPAGGLGGKCVYITTEGDlPTQRLESMLS 174
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLY-----NGALKYGEPGVFVTLEEP-PEDLRENARS 69
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
108-232 |
4.96e-03 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 38.27 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320207 108 DEL---LGGGIFTHGITEIFGESSTGKSQLLMQLALsvqlsepaGGL--GGKCVYITTEGdlpTQR--LESMLS-----S 175
Cdd:COG2874 8 DELdkrLGGGIPLGSLVLIEGENGTGKSVLSQQFAY--------GALenGLSVTYISTEL---TTKefIKQMKSlsydiS 76
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90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 6320207 176 RP-AYEKLGITQSNIFTVSCNDLiNQEHIINVQLPILLERSKGSiKLVIIDSISHHLR 232
Cdd:COG2874 77 DYlLRGRLLFLPVHPLGFEWNSK-QRKDLLKRLMKYIASNLWEA-DVIIIDSLSALLR 132
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