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Conserved domains on  [gi|60218897|ref|NP_005739|]
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YY1-associated factor 2 isoform 2 [Homo sapiens]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 12003059)

zinc finger Ran-binding domain-containing protein similar to Arabidopsis thaliana chloroplastic zinc finger protein VAR3, which is involved in C-to-U editing of chloroplastic RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YAF2_RYBP pfam17219
Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are ...
 102-134 4.88e-13

Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are homologous parts of the PRC1 complex. This motif forms a beta hairpin structure when it binds to the RAWUL domain pfam16207.


:

Pssm-ID: 465386  Cd Length: 33  Bit Score: 60.09  E-value: 4.88e-13
                          10        20        30
                  ....*....|....*....|....*....|...
gi 60218897   102 RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKT 134
Cdd:pfam17219   1 RPRLKNVDRSSAQTRAVTVNNVTVIITEFKPKK 33
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
20-43 7.72e-06

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.18  E-value: 7.72e-06
                          10        20
                  ....*....|....*....|....
gi 60218897    20 EGYWDCSVCTFRNSAEAFKCMMCD 43
Cdd:pfam00641   2 EGDWDCSKCLVQNFATSTKCVACQ 25
 
Name Accession Description Interval E-value
YAF2_RYBP pfam17219
Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are ...
 102-134 4.88e-13

Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are homologous parts of the PRC1 complex. This motif forms a beta hairpin structure when it binds to the RAWUL domain pfam16207.


Pssm-ID: 465386  Cd Length: 33  Bit Score: 60.09  E-value: 4.88e-13
                          10        20        30
                  ....*....|....*....|....*....|...
gi 60218897   102 RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKT 134
Cdd:pfam17219   1 RPRLKNVDRSSAQTRAVTVNNVTVIITEFKPKK 33
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
20-43 7.72e-06

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.18  E-value: 7.72e-06
                          10        20
                  ....*....|....*....|....
gi 60218897    20 EGYWDCSVCTFRNSAEAFKCMMCD 43
Cdd:pfam00641   2 EGDWDCSKCLVQNFATSTKCVACQ 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 23-43 1.97e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 39.99  E-value: 1.97e-05
                           10        20
                   ....*....|....*....|.
gi 60218897     23 WDCSVCTFRNSAEAFKCMMCD 43
Cdd:smart00547   3 WECPACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
YAF2_RYBP pfam17219
Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are ...
 102-134 4.88e-13

Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are homologous parts of the PRC1 complex. This motif forms a beta hairpin structure when it binds to the RAWUL domain pfam16207.


Pssm-ID: 465386  Cd Length: 33  Bit Score: 60.09  E-value: 4.88e-13
                          10        20        30
                  ....*....|....*....|....*....|...
gi 60218897   102 RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKT 134
Cdd:pfam17219   1 RPRLKNVDRSSAQTRAVTVNNVTVIITEFKPKK 33
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
20-43 7.72e-06

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 41.18  E-value: 7.72e-06
                          10        20
                  ....*....|....*....|....
gi 60218897    20 EGYWDCSVCTFRNSAEAFKCMMCD 43
Cdd:pfam00641   2 EGDWDCSKCLVQNFATSTKCVACQ 25
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 23-43 1.97e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 39.99  E-value: 1.97e-05
                           10        20
                   ....*....|....*....|.
gi 60218897     23 WDCSVCTFRNSAEAFKCMMCD 43
Cdd:smart00547   3 WECPACTFLNFASRSKCFACG 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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