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Conserved domains on  [gi|5032051|ref|NP_005608|]
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small ribosomal subunit protein uS11 [Homo sapiens]

Protein Classification

uS11 family ribosomal protein( domain architecture ID 10015226)

uS11 family ribosomal protein can be bound by emetine, inhibiting protein synthesis

Gene Ontology:  GO:0003735|GO:0000028|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00129 PTZ00129
40S ribosomal protein S14; Provisional
1-140 8.69e-94

40S ribosomal protein S14; Provisional


:

Pssm-ID: 185465  Cd Length: 149  Bit Score: 267.88  E-value: 8.69e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQD 80
Cdd:PTZ00129   1 SKKKATKMSKKQEVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAQD 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    81 VAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:PTZ00129  81 VAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDST 140
 
Name Accession Description Interval E-value
PTZ00129 PTZ00129
40S ribosomal protein S14; Provisional
1-140 8.69e-94

40S ribosomal protein S14; Provisional


Pssm-ID: 185465  Cd Length: 149  Bit Score: 267.88  E-value: 8.69e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQD 80
Cdd:PTZ00129   1 SKKKATKMSKKQEVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAQD 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    81 VAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:PTZ00129  81 VAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDST 140
arch_S11P TIGR03628
ribosomal protein uS11P, archaeal form; This model describes exclusively the archaeal ...
29-140 4.64e-60

ribosomal protein uS11P, archaeal form; This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274686  Cd Length: 117  Bit Score: 181.52  E-value: 4.64e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     29 GVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTP 108
Cdd:TIGR03628   3 GIAHIYSSFNNTIITITDITGAETIARVSGGMVVKADRDEPSPYAAMQAARRAAEKALERGITGVHIKVRAPGGNGSKTP 82
                          90       100       110
                  ....*....|....*....|....*....|..
gi 5032051    109 GPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:TIGR03628  83 GPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 114
Ribosomal_S11 pfam00411
Ribosomal protein S11;
29-140 8.21e-51

Ribosomal protein S11;


Pssm-ID: 306838  Cd Length: 109  Bit Score: 157.62  E-value: 8.21e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     29 GVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRdESSPYAAMLAAQDVAQRCKELGITALHIKLRAtggnrtktP 108
Cdd:pfam00411   1 GVAHIQASFNNTIITITDITGRETLWKSAGGMGFKGSR-KSSPYAAQLAAEDAARAAKDLGIKALEVMVRG--------P 71
                          90       100       110
                  ....*....|....*....|....*....|..
gi 5032051    109 GPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:pfam00411  72 GPGRQAAIRALARAGVIIGRIEDVTPMPHNGC 103
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
1-136 1.45e-41

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439870  Cd Length: 130  Bit Score: 134.86  E-value: 1.45e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    1 MA--PRKGKEKKEEQVISlgpqvaegenvFGVCHIFASFNDTFVHVTDLSGkETICRVTGGMKVKADRDESSPYAAMLAA 78
Cdd:COG0100   1 MAkkKKKKTKKKKKKNVP-----------SGIAHIHSTFNNTIVTITDLQG-NVIAWSSAGTVGFKGSRKSTPYAAQVAA 68
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 5032051   79 QDVAQRCKELGITALHIKLRAtggnrtktPGPGAQSALRALARSGMKIGRIEDVTPIP 136
Cdd:COG0100  69 EKAAKKAMEHGLKEVEVRVKG--------PGPGRESAIRALQAAGLEVTSIKDVTPIP 118
 
Name Accession Description Interval E-value
PTZ00129 PTZ00129
40S ribosomal protein S14; Provisional
1-140 8.69e-94

40S ribosomal protein S14; Provisional


Pssm-ID: 185465  Cd Length: 149  Bit Score: 267.88  E-value: 8.69e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQD 80
Cdd:PTZ00129   1 SKKKATKMSKKQEVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAQD 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    81 VAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:PTZ00129  81 VAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDST 140
rps11p PRK09607
30S ribosomal protein S11P; Reviewed
22-140 4.28e-68

30S ribosomal protein S11P; Reviewed


Pssm-ID: 236588  Cd Length: 132  Bit Score: 202.16  E-value: 4.28e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    22 AEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATG 101
Cdd:PRK09607   3 SMRKEKWGIAHIYASFNNTIITITDLTGAETIAKSSGGMVVKADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPG 82
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 5032051   102 GNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:PRK09607  83 GNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT 121
arch_S11P TIGR03628
ribosomal protein uS11P, archaeal form; This model describes exclusively the archaeal ...
29-140 4.64e-60

ribosomal protein uS11P, archaeal form; This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274686  Cd Length: 117  Bit Score: 181.52  E-value: 4.64e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     29 GVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTP 108
Cdd:TIGR03628   3 GIAHIYSSFNNTIITITDITGAETIARVSGGMVVKADRDEPSPYAAMQAARRAAEKALERGITGVHIKVRAPGGNGSKTP 82
                          90       100       110
                  ....*....|....*....|....*....|..
gi 5032051    109 GPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:TIGR03628  83 GPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 114
Ribosomal_S11 pfam00411
Ribosomal protein S11;
29-140 8.21e-51

Ribosomal protein S11;


Pssm-ID: 306838  Cd Length: 109  Bit Score: 157.62  E-value: 8.21e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     29 GVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRdESSPYAAMLAAQDVAQRCKELGITALHIKLRAtggnrtktP 108
Cdd:pfam00411   1 GVAHIQASFNNTIITITDITGRETLWKSAGGMGFKGSR-KSSPYAAQLAAEDAARAAKDLGIKALEVMVRG--------P 71
                          90       100       110
                  ....*....|....*....|....*....|..
gi 5032051    109 GPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
Cdd:pfam00411  72 GPGRQAAIRALARAGVIIGRIEDVTPMPHNGC 103
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
1-136 1.45e-41

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439870  Cd Length: 130  Bit Score: 134.86  E-value: 1.45e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    1 MA--PRKGKEKKEEQVISlgpqvaegenvFGVCHIFASFNDTFVHVTDLSGkETICRVTGGMKVKADRDESSPYAAMLAA 78
Cdd:COG0100   1 MAkkKKKKTKKKKKKNVP-----------SGIAHIHSTFNNTIVTITDLQG-NVIAWSSAGTVGFKGSRKSTPYAAQVAA 68
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 5032051   79 QDVAQRCKELGITALHIKLRAtggnrtktPGPGAQSALRALARSGMKIGRIEDVTPIP 136
Cdd:COG0100  69 EKAAKKAMEHGLKEVEVRVKG--------PGPGRESAIRALQAAGLEVTSIKDVTPIP 118
PRK05309 PRK05309
30S ribosomal protein S11; Validated
1-136 3.90e-26

30S ribosomal protein S11; Validated


Pssm-ID: 180007  Cd Length: 128  Bit Score: 95.62  E-value: 3.90e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     1 MAPRKGKEKKEEQVISLGpqvaegenvfgVCHIFASFNDTFVHVTDLSGKeTICRVT-GGMKVKADRdESSPYAAMLAAQ 79
Cdd:PRK05309   1 AKKKKTVKKKVKKNIPSG-----------VAHIHATFNNTIVTITDRQGN-VISWASaGGLGFKGSR-KSTPYAAQVAAE 67
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 5032051    80 DVAQRCKELGITALHIKLratggnrtKTPGPGAQSALRALARSGMKIGRIEDVTPIP 136
Cdd:PRK05309  68 DAAKKAKEHGMKTVEVFV--------KGPGSGRESAIRALQAAGLEVTSIKDVTPIP 116
uS11_bact TIGR03632
ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal ...
29-136 2.25e-24

ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274689  Cd Length: 108  Bit Score: 90.37  E-value: 2.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051     29 GVCHIFASFNDTFVHVTDLSGKeTIC-RVTGGMKVKADRdESSPYAAMLAAQDVAQRCKELGITALHIKLratggnrtKT 107
Cdd:TIGR03632   1 GIVHIHATFNNTIVTITDPQGN-VLSwASAGTSGFKGSR-KSTPYAAQMAAEKAAKKAMEMGMKTVDVYV--------KG 70
                          90       100
                  ....*....|....*....|....*....
gi 5032051    108 PGPGAQSALRALARSGMKIGRIEDVTPIP 136
Cdd:TIGR03632  71 PGAGRESAIRALQAAGLEVTSIKDVTPIP 99
rps11 CHL00041
ribosomal protein S11
29-136 4.95e-19

ribosomal protein S11


Pssm-ID: 176982  Cd Length: 116  Bit Score: 76.84  E-value: 4.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5032051    29 GVCHIFASFNDTFVHVTDLSGKeTICRVTGGM-KVKADRdESSPYAAMLAAQDVAQRCKELGITALHIKLratggnrtKT 107
Cdd:CHL00041  14 GVIHIQASFNNTIVTVTDVRGR-VISWSSAGAcGFKGAR-KGTPFAAQTAAENAIRTVIDQGMKRAEVMI--------KG 83
                         90       100
                 ....*....|....*....|....*....
gi 5032051   108 PGPGAQSALRALARSGMKIGRIEDVTPIP 136
Cdd:CHL00041  84 PGLGRDTALRAIRRSGLKLSSIRDVTPMP 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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