|
Name |
Accession |
Description |
Interval |
E-value |
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
755-900 |
7.85e-25 |
|
Toll - interleukin 1 - resistance;
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 100.86 E-value: 7.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 755 EYAAYIIHAYKDkdWVWEHFSSMEKEDQ-SLKFCLEERDFEAGVFELEAIVNSIKRSRKIIFVITHHLLKDPLCkRFKVH 833
Cdd:smart00255 1 EYDVFISYSGKE--DVRNEFLSHLLEKLrGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWC-LDELV 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4507531 834 HAVQQAIEQNLDSIILVFLEEIPDYKLNHALCLRRGMFKShcILNWPvqKERIGAFRHKLQVALGSK 900
Cdd:smart00255 78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKN--YLKWP--EDEKEQFWKKALYAVPSK 140
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
36-309 |
1.22e-17 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 86.53 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 36 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAAnFTRYSQLTSLDVGFNTISKLEPELcQKLPMLKVLNLQHNELSQ 113
Cdd:COG4886 119 DLSGNQLTDLPEELAnlTNLKELDLSNNQLTDLPEP-LGNLTNLKSLDLSNNQLTDLPEEL-GNLTNLKELDLSNNQITD 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 114 LSDkTFAFCTNLTELHLMSNSIQKIkNNPFVKQKNLITLDLSHNGLSS-------TKLgtqvqlenlQELLLSNNKIQAL 186
Cdd:COG4886 197 LPE-PLGNLTNLEELDLSGNQLTDL-PEPLANLTNLETLDLSNNQLTDlpelgnlTNL---------EELDLSNNQLTDL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 187 KSEeldiFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 266
Cdd:COG4886 266 PPL----ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLA 341
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 4507531 267 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 309
Cdd:COG4886 342 LSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLAL 384
|
|
| Tlr3_TMD |
pfam17968 |
Toll-like receptor 3 trans-membrane domain; Toll-like receptor (TLR) 3 is an endosomal TLR ... |
698-730 |
2.25e-13 |
|
Toll-like receptor 3 trans-membrane domain; Toll-like receptor (TLR) 3 is an endosomal TLR that mediates immune responses against viral infections upon activation by its ligand double-stranded RNA, a replication intermediate of most viruses. TLR3 is expressed widely in the body and activates both the innate and adaptive immune systems. This entry represents the Toll-like receptor 3 trans-membrane domain which has been shown to form dimers and trimers with different surfaces for helix-helix interaction.
Pssm-ID: 465595 Cd Length: 33 Bit Score: 64.63 E-value: 2.25e-13
10 20 30
....*....|....*....|....*....|...
gi 4507531 698 DSAPFELFFMINTSILLIFIFIVLLIHFEGWRI 730
Cdd:pfam17968 1 DSAPFKLLFVISSTAVLLFIFIVLLIHFQGWRI 33
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
72-542 |
3.18e-12 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 70.65 E-value: 3.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 72 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKqkNLI 150
Cdd:PLN00113 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSgPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP--NLE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 151 TLDLSHNGLSStklgtqvqlenlqelllsnnKIQAlkseelDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 230
Cdd:PLN00113 144 TLDLSNNMLSG--------------------EIPN------DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 231 VQLgpslTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFLGLkwTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 309
Cdd:PLN00113 198 NQL----VGQIPRELGQMkSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 310 IQHLFSHSLHGLFNVRYLNLKRSFTKQSIslaslPKIddfsFQWLKCLEHLNMEDNDIPG----------------IKSN 373
Cdd:PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEI-----PEL----VIQLQNLEILHLFSNNFTGkipvaltslprlqvlqLWSN 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 374 MFTGLINlKYLSLSNSFTSLRTLTN-------ETFVSLAHSPLHIL--NLTKNKISKIESDAFSwlghLEVLDLGLNEIG 444
Cdd:PLN00113 343 KFSGEIP-KNLGKHNNLTVLDLSTNnltgeipEGLCSSGNLFKLILfsNSLEGEIPKSLGACRS----LRRVRLQDNSFS 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 445 QELTgQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-------------LKNVDSS--------PSPFQ 503
Cdd:PLN00113 418 GELP-SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKffgglpdsfgskrLENLDLSrnqfsgavPRKLG 496
|
490 500 510
....*....|....*....|....*....|....*....
gi 4507531 504 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 542
Cdd:PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
284-630 |
5.60e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 65.73 E-value: 5.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 284 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 363
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 364 DNDIPGIKSNMFTGLINLKYLSLSNSfTSLRTLTNetfvslahspLHILNLTKNKISKIeSDAFSWLGHLEVLDLGLNEI 443
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGN-EELSNLTN----------LESLDLSGNQLTDL-PEELANLTNLKELDLSNNQL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 444 GQelTGQEWRGLENIFEIYLSYNKYLQLtrnsfalvpslqrlmlrrvalknvdssPSPFQPLRNLTILDLSNNNIANIND 523
Cdd:COG4886 149 TD--LPEPLGNLTNLKSLDLSNNQLTDL---------------------------PEELGNLTNLKELDLSNNQITDLPE 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 524 DmLEGLEKLEILDLQHNNLARLwkhanPGGpiyfLKGLSHLHILNLESNGFDEIPveVFKDLFELKIIDLGLNNLNTLPA 603
Cdd:COG4886 200 P-LGNLTNLEELDLSGNQLTDL-----PEP----LANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLPP 267
|
330 340
....*....|....*....|....*..
gi 4507531 604 SVFNNQvsLKSLNLQKNLITSVEKKVF 630
Cdd:COG4886 268 LANLTN--LKTLDLSNNQLTDLKLKEL 292
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
354-540 |
3.33e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 57.87 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 354 LKCLEHLNMEDNDIPGIKSnmFTGLINLKYLSL-SNSFTSLRTLtnETFVSLAHsplhiLNLTKNKISKIESdaFSWLGH 432
Cdd:cd21340 1 LKRITHLYLNDKNITKIDN--LSLCKNLKVLYLyDNKITKIENL--EFLTNLTH-----LYLQNNQIEKIEN--LENLVN 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 433 LEVLDLGLNEIgQELTGQEwrGLENIFEIYLSY------NKYLQLTRNSFALVPSLQRLMLRRVALknvdSSPSPFQPLR 506
Cdd:cd21340 70 LKKLYLGGNRI-SVVEGLE--NLTNLEELHIENqrlppgEKLTFDPRSLAALSNSLRVLNISGNNI----DSLEPLAPLR 142
|
170 180 190
....*....|....*....|....*....|....*.
gi 4507531 507 NLTILDLS--NNNIANINDDMLEGLEKLEILDLQHN 540
Cdd:cd21340 143 NLEQLDASnnQISDLEELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
274-329 |
5.88e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 52.91 E-value: 5.88e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 4507531 274 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 329
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDL 56
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
37-207 |
8.43e-08 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 53.64 E-value: 8.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 37 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPaaNFTRYSQLTSLDVGFNTISKLEPElcQKLPMLKVLNLQHNELSQLS 115
Cdd:cd21340 9 LNDKNITKIDNlSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEKIENL--ENLVNLKKLYLGGNRISVVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 116 DktFAFCTNLTELHLMSNSIQKikNNPFVK--------QKNLITLDLSHNGLSStkLGTQVQLENLQELLLSNNKIQALK 187
Cdd:cd21340 85 G--LENLTNLEELHIENQRLPP--GEKLTFdprslaalSNSLRVLNISGNNIDS--LEPLAPLRNLEQLDASNNQISDLE 158
|
170 180
....*....|....*....|
gi 4507531 188 SEELDIFANSSLKKLELSSN 207
Cdd:cd21340 159 ELLDLLSSWPSLRELDLTGN 178
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
645-697 |
4.02e-07 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 47.42 E-value: 4.02e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 4507531 645 NPFDCTCEsIAWFVNWINET-HTNIPElssHYLCNTPPHYHGfPVRLFDTSS--CK 697
Cdd:smart00082 1 NPFICDCE-LRWLLRWLQANeHLQDPV---DLRCASPSSLRG-PLLELLHSEfkCP 51
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
409-467 |
5.27e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.52 E-value: 5.27e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 4507531 409 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIgQELTGQEWRGLENIFEIYLSYNK 467
Cdd:pfam13855 3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL-TTLSPGAFSGLPSLRYLDLSGNR 60
|
|
| PCC |
TIGR00864 |
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ... |
616-688 |
1.62e-06 |
|
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.
Pssm-ID: 188093 [Multi-domain] Cd Length: 2740 Bit Score: 52.39 E-value: 1.62e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4507531 616 NLQKNLITSVEKKVFGPAFrNLTELDMRFNPFDCTCeSIAWFVNWINETHTNI--PELSshyLCNTPPHYHGFPV 688
Cdd:TIGR00864 1 DISNNKISTIEEGICANLC-NLSEIDLSGNPFECDC-GLARLPRWAEEKGVKVrqPEAA---LCAGPGALAGQPL 70
|
|
| TIR |
pfam01582 |
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ... |
785-880 |
2.31e-05 |
|
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.
Pssm-ID: 396246 [Multi-domain] Cd Length: 165 Bit Score: 45.43 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 785 KFCLEERDFEAGVFELEAIVNSIKRSRKIIFVITHHLLKDPLCkRFKVHHAVQQAIEQNLdSIILVFLEEIPDYKLNHAL 864
Cdd:pfam01582 30 KLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWC-LDELVKILECALDLGQ-KVIPIFYEVDPSDVRKQTG 107
|
90 100
....*....|....*....|...
gi 4507531 865 CLRRGmFKSHC-------ILNWP 880
Cdd:pfam01582 108 SFGKA-FKKHKkvlteekVLKWR 129
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
457-680 |
3.69e-05 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 47.38 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 457 NIFEIYLSYNkylQLTRNSFALVPSLQRLMLRRVALKNV-DSSPSPFQPLrnltilDLSNNNIANINDDMLEGLEKLEIL 535
Cdd:PRK15370 221 NIKTLYANSN---QLTSIPATLPDTIQEMELSINRITELpERLPSALQSL------DLFHNKISCLPENLPEELRYLSVY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 536 DlqhNNLARLwkhanpggPIYFLKGLSHlhiLNLESNGFDEIPVEVFKDlfeLKIIDLGLNNLNTLPASVfnnQVSLKSL 615
Cdd:PRK15370 292 D---NSIRTL--------PAHLPSGITH---LNVQSNSLTALPETLPPG---LKTLEAGENALTSLPASL---PPELQVL 351
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4507531 616 NLQKNLITsVEKKVFGPafrNLTELDMRFNPFDCTCESIAWFVNWINETHTN---IPELSSHYLCNTP 680
Cdd:PRK15370 352 DVSKNQIT-VLPETLPP---TITTLDVSRNALTNLPENLPAALQIMQASRNNlvrLPESLPHFRGEGP 415
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
28-54 |
5.68e-03 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 35.37 E-value: 5.68e-03
10 20
....*....|....*....|....*..
gi 4507531 28 CTVSHEVADCSHLKLTQVPDDLPTNIT 54
Cdd:smart00013 6 CNCSGTAVDCSGRGLTEVPLDLPPDTT 32
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
755-900 |
7.85e-25 |
|
Toll - interleukin 1 - resistance;
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 100.86 E-value: 7.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 755 EYAAYIIHAYKDkdWVWEHFSSMEKEDQ-SLKFCLEERDFEAGVFELEAIVNSIKRSRKIIFVITHHLLKDPLCkRFKVH 833
Cdd:smart00255 1 EYDVFISYSGKE--DVRNEFLSHLLEKLrGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWC-LDELV 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4507531 834 HAVQQAIEQNLDSIILVFLEEIPDYKLNHALCLRRGMFKShcILNWPvqKERIGAFRHKLQVALGSK 900
Cdd:smart00255 78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKN--YLKWP--EDEKEQFWKKALYAVPSK 140
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
36-309 |
1.22e-17 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 86.53 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 36 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAAnFTRYSQLTSLDVGFNTISKLEPELcQKLPMLKVLNLQHNELSQ 113
Cdd:COG4886 119 DLSGNQLTDLPEELAnlTNLKELDLSNNQLTDLPEP-LGNLTNLKSLDLSNNQLTDLPEEL-GNLTNLKELDLSNNQITD 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 114 LSDkTFAFCTNLTELHLMSNSIQKIkNNPFVKQKNLITLDLSHNGLSS-------TKLgtqvqlenlQELLLSNNKIQAL 186
Cdd:COG4886 197 LPE-PLGNLTNLEELDLSGNQLTDL-PEPLANLTNLETLDLSNNQLTDlpelgnlTNL---------EELDLSNNQLTDL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 187 KSEeldiFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 266
Cdd:COG4886 266 PPL----ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLA 341
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 4507531 267 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 309
Cdd:COG4886 342 LSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLAL 384
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
36-296 |
1.65e-15 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 79.98 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 36 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAAnFTRYSQLTSLDVGFNTISKLEPELCQkLPMLKVLNLQHNELSQ 113
Cdd:COG4886 142 DLSNNQLTDLPEPLGnlTNLKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDLPEPLGN-LTNLEELDLSGNQLTD 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 114 LSDkTFAFCTNLTELHLMSNSIQKIKNnpFVKQKNLITLDLSHNGLSStkLGTQVQLENLQELLLSNNKIQALKSEELDI 193
Cdd:COG4886 220 LPE-PLANLTNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTD--LPPLANLTNLKTLDLSNNQLTDLKLKELEL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 194 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 273
Cdd:COG4886 295 LLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGL 374
|
250 260
....*....|....*....|...
gi 4507531 274 TNLTMLDLSYNNLNVVGNDSFAW 296
Cdd:COG4886 375 LEATLLTLALLLLTLLLLLLTTT 397
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
51-415 |
6.70e-15 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 78.05 E-value: 6.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 51 TNITVLNLTHNQLRRLPAAnFTRYSQLTSLDVGFNTISKLEPELcQKLPMLKVLNLQHNELSQLSDkTFAFCTNLTELHL 130
Cdd:COG4886 113 TNLESLDLSGNQLTDLPEE-LANLTNLKELDLSNNQLTDLPEPL-GNLTNLKSLDLSNNQLTDLPE-ELGNLTNLKELDL 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 131 MSNSIQKIKNnPFVKQKNLITLDLSHNGLSStklgtqvqlenlqelllsnnkiqalksEELDIFANSSLKKLELSSNQIK 210
Cdd:COG4886 190 SNNQITDLPE-PLGNLTNLEELDLSGNQLTD---------------------------LPEPLANLTNLETLDLSNNQLT 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 211 EFspgcfhaigrlfglflnnvqlgPSLTEklclelaNTSIRNLSLSNSQLSTTSNTtflgLKWTNLTMLDLSYNNLNVVG 290
Cdd:COG4886 242 DL----------------------PELGN-------LTNLEELDLSNNQLTDLPPL----ANLTNLKTLDLSNNQLTDLK 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 291 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 370
Cdd:COG4886 289 LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLT 368
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 4507531 371 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 415
Cdd:COG4886 369 LGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNT 413
|
|
| Tlr3_TMD |
pfam17968 |
Toll-like receptor 3 trans-membrane domain; Toll-like receptor (TLR) 3 is an endosomal TLR ... |
698-730 |
2.25e-13 |
|
Toll-like receptor 3 trans-membrane domain; Toll-like receptor (TLR) 3 is an endosomal TLR that mediates immune responses against viral infections upon activation by its ligand double-stranded RNA, a replication intermediate of most viruses. TLR3 is expressed widely in the body and activates both the innate and adaptive immune systems. This entry represents the Toll-like receptor 3 trans-membrane domain which has been shown to form dimers and trimers with different surfaces for helix-helix interaction.
Pssm-ID: 465595 Cd Length: 33 Bit Score: 64.63 E-value: 2.25e-13
10 20 30
....*....|....*....|....*....|...
gi 4507531 698 DSAPFELFFMINTSILLIFIFIVLLIHFEGWRI 730
Cdd:pfam17968 1 DSAPFKLLFVISSTAVLLFIFIVLLIHFQGWRI 33
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
72-542 |
3.18e-12 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 70.65 E-value: 3.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 72 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKqkNLI 150
Cdd:PLN00113 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSgPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP--NLE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 151 TLDLSHNGLSStklgtqvqlenlqelllsnnKIQAlkseelDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 230
Cdd:PLN00113 144 TLDLSNNMLSG--------------------EIPN------DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 231 VQLgpslTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFLGLkwTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 309
Cdd:PLN00113 198 NQL----VGQIPRELGQMkSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 310 IQHLFSHSLHGLFNVRYLNLKRSFTKQSIslaslPKIddfsFQWLKCLEHLNMEDNDIPG----------------IKSN 373
Cdd:PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEI-----PEL----VIQLQNLEILHLFSNNFTGkipvaltslprlqvlqLWSN 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 374 MFTGLINlKYLSLSNSFTSLRTLTN-------ETFVSLAHSPLHIL--NLTKNKISKIESDAFSwlghLEVLDLGLNEIG 444
Cdd:PLN00113 343 KFSGEIP-KNLGKHNNLTVLDLSTNnltgeipEGLCSSGNLFKLILfsNSLEGEIPKSLGACRS----LRRVRLQDNSFS 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 445 QELTgQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-------------LKNVDSS--------PSPFQ 503
Cdd:PLN00113 418 GELP-SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKffgglpdsfgskrLENLDLSrnqfsgavPRKLG 496
|
490 500 510
....*....|....*....|....*....|....*....
gi 4507531 504 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 542
Cdd:PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
98-485 |
9.36e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 68.04 E-value: 9.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 98 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 177
Cdd:COG4886 8 LTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 178 LSNNKIQALKSEELDIFAN------SSLKKLELSSNQIKEFSPgcfhAIGRLfglflnnvqlgpslteklclelanTSIR 251
Cdd:COG4886 88 GLTDLGDLTNLTELDLSGNeelsnlTNLESLDLSGNQLTDLPE----ELANL------------------------TNLK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 252 NLSLSNSQLstTSNTTFLGlKWTNLTMLDLSYNNLNVVGnDSFAWLPQLEYFFLEYNNIQHLfSHSLHGLFNVRYLNLKR 331
Cdd:COG4886 140 ELDLSNNQL--TDLPEPLG-NLTNLKSLDLSNNQLTDLP-EELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSG 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 332 S-FTKQSISLASLPKiddfsfqwlkcLEHLNMEDNDIPGIKSnmFTGLINLKYLSLSN----SFTSLRTLTNETFVSLAH 406
Cdd:COG4886 215 NqLTDLPEPLANLTN-----------LETLDLSNNQLTDLPE--LGNLTNLEELDLSNnqltDLPPLANLTNLKTLDLSN 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 407 SPLHILNLTK-NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 485
Cdd:COG4886 282 NQLTDLKLKElELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
284-630 |
5.60e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 65.73 E-value: 5.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 284 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 363
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 364 DNDIPGIKSNMFTGLINLKYLSLSNSfTSLRTLTNetfvslahspLHILNLTKNKISKIeSDAFSWLGHLEVLDLGLNEI 443
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGN-EELSNLTN----------LESLDLSGNQLTDL-PEELANLTNLKELDLSNNQL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 444 GQelTGQEWRGLENIFEIYLSYNKYLQLtrnsfalvpslqrlmlrrvalknvdssPSPFQPLRNLTILDLSNNNIANIND 523
Cdd:COG4886 149 TD--LPEPLGNLTNLKSLDLSNNQLTDL---------------------------PEELGNLTNLKELDLSNNQITDLPE 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 524 DmLEGLEKLEILDLQHNNLARLwkhanPGGpiyfLKGLSHLHILNLESNGFDEIPveVFKDLFELKIIDLGLNNLNTLPA 603
Cdd:COG4886 200 P-LGNLTNLEELDLSGNQLTDL-----PEP----LANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLSNNQLTDLPP 267
|
330 340
....*....|....*....|....*..
gi 4507531 604 SVFNNQvsLKSLNLQKNLITSVEKKVF 630
Cdd:COG4886 268 LANLTN--LKTLDLSNNQLTDLKLKEL 292
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
77-478 |
1.65e-10 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 64.18 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 77 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNElsqlsdkTFAFCTNLTELHLMSNSIQKIKNNpFVKQKNLITLDLsh 156
Cdd:COG4886 74 LLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEE-LANLTNLKELDL-- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 157 nglsstklgtqvqlenlqelllSNNKIQALKSEeldIFANSSLKKLELSSNQIKEFSPgcfhAIGRLfglflnnvqlgps 236
Cdd:COG4886 144 ----------------------SNNQLTDLPEP---LGNLTNLKSLDLSNNQLTDLPE----ELGNL------------- 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 237 lteklclelanTSIRNLSLSNSQLSTTSNTtfLGlKWTNLTMLDLSYNNLNVVGnDSFAWLPQLEYFFLEYNNIQHLFsh 316
Cdd:COG4886 182 -----------TNLKELDLSNNQITDLPEP--LG-NLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTDLP-- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 317 SLHGLFNVRYLNLkrSFTKqsisLASLPKIDDfsfqwLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSfTSLRTL 396
Cdd:COG4886 245 ELGNLTNLEELDL--SNNQ----LTDLPPLAN-----LTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLL-LLNLLE 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 397 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 476
Cdd:COG4886 313 LLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLL 392
|
..
gi 4507531 477 AL 478
Cdd:COG4886 393 LL 394
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
223-622 |
8.32e-10 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 61.87 E-value: 8.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 223 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 302
Cdd:COG4886 21 LTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 303 FFLEYNNiqhlfshSLHGLFNVRYLNLKRSftkqsiSLASLPKiddfSFQWLKCLEHLNMEDNDIPGIKSNmFTGLINLK 382
Cdd:COG4886 101 LDLSGNE-------ELSNLTNLESLDLSGN------QLTDLPE----ELANLTNLKELDLSNNQLTDLPEP-LGNLTNLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 383 YLSLSNsfTSLRTLTNEtFVSLAHspLHILNLTKNKISKIeSDAFSWLGHLEVLDLG---LNEIGQELTGqewrgLENIF 459
Cdd:COG4886 163 SLDLSN--NQLTDLPEE-LGNLTN--LKELDLSNNQITDL-PEPLGNLTNLEELDLSgnqLTDLPEPLAN-----LTNLE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 460 EIYLSYNKYLQLTrnSFALVPSLQRLMLRRvalkNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 539
Cdd:COG4886 232 TLDLSNNQLTDLP--ELGNLTNLEELDLSN----NQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLL 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 540 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 619
Cdd:COG4886 306 LLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALL 385
|
...
gi 4507531 620 NLI 622
Cdd:COG4886 386 LLT 388
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
411-645 |
1.04e-09 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 61.49 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 411 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 490
Cdd:COG4886 1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 491 ALKNVDSSPSPFQPLRNLTILDLSNNNIaninddmLEGLEKLEILDLQHNNLARLWKhanpggpiyFLKGLSHLHILNLE 570
Cdd:COG4886 81 LLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTDLPE---------ELANLTNLKELDLS 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4507531 571 SNGFDEIPvEVFKDLFELKIIDLGLNNLNTLPASVFNNQvSLKSLNLQKNLITSVEKKVFGpaFRNLTELDMRFN 645
Cdd:COG4886 145 NNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPEELGNLT-NLKELDLSNNQITDLPEPLGN--LTNLEELDLSGN 215
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
354-540 |
3.33e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 57.87 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 354 LKCLEHLNMEDNDIPGIKSnmFTGLINLKYLSL-SNSFTSLRTLtnETFVSLAHsplhiLNLTKNKISKIESdaFSWLGH 432
Cdd:cd21340 1 LKRITHLYLNDKNITKIDN--LSLCKNLKVLYLyDNKITKIENL--EFLTNLTH-----LYLQNNQIEKIEN--LENLVN 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 433 LEVLDLGLNEIgQELTGQEwrGLENIFEIYLSY------NKYLQLTRNSFALVPSLQRLMLRRVALknvdSSPSPFQPLR 506
Cdd:cd21340 70 LKKLYLGGNRI-SVVEGLE--NLTNLEELHIENqrlppgEKLTFDPRSLAALSNSLRVLNISGNNI----DSLEPLAPLR 142
|
170 180 190
....*....|....*....|....*....|....*.
gi 4507531 507 NLTILDLS--NNNIANINDDMLEGLEKLEILDLQHN 540
Cdd:cd21340 143 NLEQLDASnnQISDLEELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
274-329 |
5.88e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 52.91 E-value: 5.88e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 4507531 274 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 329
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDL 56
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
248-310 |
1.30e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 51.76 E-value: 1.30e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 4507531 248 TSIRNLSLSNSQLSTTSNTTFLGLKwtNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 310
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLS--NLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
75-135 |
5.07e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 50.22 E-value: 5.07e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507531 75 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 135
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
37-207 |
8.43e-08 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 53.64 E-value: 8.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 37 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPaaNFTRYSQLTSLDVGFNTISKLEPElcQKLPMLKVLNLQHNELSQLS 115
Cdd:cd21340 9 LNDKNITKIDNlSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEKIENL--ENLVNLKKLYLGGNRISVVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 116 DktFAFCTNLTELHLMSNSIQKikNNPFVK--------QKNLITLDLSHNGLSStkLGTQVQLENLQELLLSNNKIQALK 187
Cdd:cd21340 85 G--LENLTNLEELHIENQRLPP--GEKLTFdprslaalSNSLRVLNISGNNIDS--LEPLAPLRNLEQLDASNNQISDLE 158
|
170 180
....*....|....*....|
gi 4507531 188 SEELDIFANSSLKKLELSSN 207
Cdd:cd21340 159 ELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
51-111 |
1.74e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.67 E-value: 1.74e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507531 51 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 111
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRRCT |
smart00082 |
Leucine rich repeat C-terminal domain; |
645-697 |
4.02e-07 |
|
Leucine rich repeat C-terminal domain;
Pssm-ID: 214507 [Multi-domain] Cd Length: 51 Bit Score: 47.42 E-value: 4.02e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 4507531 645 NPFDCTCEsIAWFVNWINET-HTNIPElssHYLCNTPPHYHGfPVRLFDTSS--CK 697
Cdd:smart00082 1 NPFICDCE-LRWLLRWLQANeHLQDPV---DLRCASPSSLRG-PLLELLHSEfkCP 51
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
409-467 |
5.27e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.52 E-value: 5.27e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 4507531 409 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIgQELTGQEWRGLENIFEIYLSYNK 467
Cdd:pfam13855 3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL-TTLSPGAFSGLPSLRYLDLSGNR 60
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
562-622 |
5.76e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.13 E-value: 5.76e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507531 562 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 622
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
40-209 |
5.94e-07 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 53.55 E-value: 5.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 40 LKLTQVPDDLPTNITVLNLTHNQLRRLPA---AN----FTRYSQLTSLDVGF-NTISKLE------PELCQKLP-MLKVL 104
Cdd:PRK15370 188 LGLTTIPACIPEQITTLILDNNELKSLPEnlqGNiktlYANSNQLTSIPATLpDTIQEMElsinriTELPERLPsALQSL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 105 NLQHNELSQLSD------KTFAFCTN------------LTELHLMSNSIQKIknnPFVKQKNLITLDLSHNGLSSTKlgt 166
Cdd:PRK15370 268 DLFHNKISCLPEnlpeelRYLSVYDNsirtlpahlpsgITHLNVQSNSLTAL---PETLPPGLKTLEAGENALTSLP--- 341
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 4507531 167 QVQLENLQELLLSNNKIQALKS------EELDIFAN----------SSLKKLELSSNQI 209
Cdd:PRK15370 342 ASLPPELQVLDVSKNQITVLPEtlpptiTTLDVSRNaltnlpenlpAALQIMQASRNNL 400
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
531-647 |
1.44e-06 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 51.20 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 531 KLEILDLQHNNL----ARLWKHAnpggpiyfLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGLNNLNTLP 602
Cdd:cd00116 166 DLKELNLANNGIgdagIRALAEG--------LKANCNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDAG 237
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 4507531 603 ASVFNNQV-----SLKSLNLQKNLITSVEKKVFG---PAFRNLTELDMRFNPF 647
Cdd:cd00116 238 AAALASALlspniSLLTLSLSCNDITDDGAKDLAevlAEKESLLELDLRGNKF 290
|
|
| PCC |
TIGR00864 |
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ... |
616-688 |
1.62e-06 |
|
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.
Pssm-ID: 188093 [Multi-domain] Cd Length: 2740 Bit Score: 52.39 E-value: 1.62e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4507531 616 NLQKNLITSVEKKVFGPAFrNLTELDMRFNPFDCTCeSIAWFVNWINETHTNI--PELSshyLCNTPPHYHGFPV 688
Cdd:TIGR00864 1 DISNNKISTIEEGICANLC-NLSEIDLSGNPFECDC-GLARLPRWAEEKGVKVrqPEAA---LCAGPGALAGQPL 70
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
101-159 |
4.84e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.82 E-value: 4.84e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 4507531 101 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 159
Cdd:pfam13855 3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
55-310 |
5.68e-06 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 50.23 E-value: 5.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 55 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLnLQHNELSQLSDKTFAFCTNLTELHLMSN 133
Cdd:PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEgLCSSGNLFKLI-LFSNSLEGEIPKSLGACRSLRRVRLQDN 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 134 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIqalkSEEL-DIFANSSLKKLELSSNQIKEf 212
Cdd:PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF----FGGLpDSFGSKRLENLDLSRNQFSG- 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 213 spgcfhAIGRLFGlflnnvqlgpSLTEklclelantsIRNLSLSNSQLSTTSNTTFLGLKwtNLTMLDLSYNNLNVVGND 292
Cdd:PLN00113 490 ------AVPRKLG----------SLSE----------LMQLKLSENKLSGEIPDELSSCK--KLVSLDLSHNQLSGQIPA 541
|
250
....*....|....*...
gi 4507531 293 SFAWLPQLEYFFLEYNNI 310
Cdd:PLN00113 542 SFSEMPVLSQLDLSQNQL 559
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
587-647 |
7.16e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 44.05 E-value: 7.16e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507531 587 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPaFRNLTELDMRFNPF 647
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSG-LPSLRYLDLSGNRL 61
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
36-161 |
1.36e-05 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 48.92 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 36 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAAnftRYSQLTSLDVGFNTISKLePElcqKLPM-LKVLNLQHNELSQL 114
Cdd:PRK15370 268 DLFHNKISCLPENLPEELRYLSVYDNSIRTLPAH---LPSGITHLNVQSNSLTAL-PE---TLPPgLKTLEAGENALTSL 340
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 4507531 115 SDKTfafctnLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 161
Cdd:PRK15370 341 PASL------PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN 381
|
|
| TIR |
pfam01582 |
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ... |
785-880 |
2.31e-05 |
|
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.
Pssm-ID: 396246 [Multi-domain] Cd Length: 165 Bit Score: 45.43 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 785 KFCLEERDFEAGVFELEAIVNSIKRSRKIIFVITHHLLKDPLCkRFKVHHAVQQAIEQNLdSIILVFLEEIPDYKLNHAL 864
Cdd:pfam01582 30 KLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWC-LDELVKILECALDLGQ-KVIPIFYEVDPSDVRKQTG 107
|
90 100
....*....|....*....|...
gi 4507531 865 CLRRGmFKSHC-------ILNWP 880
Cdd:pfam01582 108 SFGKA-FKKHKkvlteekVLKWR 129
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
457-680 |
3.69e-05 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 47.38 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 457 NIFEIYLSYNkylQLTRNSFALVPSLQRLMLRRVALKNV-DSSPSPFQPLrnltilDLSNNNIANINDDMLEGLEKLEIL 535
Cdd:PRK15370 221 NIKTLYANSN---QLTSIPATLPDTIQEMELSINRITELpERLPSALQSL------DLFHNKISCLPENLPEELRYLSVY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 536 DlqhNNLARLwkhanpggPIYFLKGLSHlhiLNLESNGFDEIPVEVFKDlfeLKIIDLGLNNLNTLPASVfnnQVSLKSL 615
Cdd:PRK15370 292 D---NSIRTL--------PAHLPSGITH---LNVQSNSLTALPETLPPG---LKTLEAGENALTSLPASL---PPELQVL 351
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4507531 616 NLQKNLITsVEKKVFGPafrNLTELDMRFNPFDCTCESIAWFVNWINETHTN---IPELSSHYLCNTP 680
Cdd:PRK15370 352 DVSKNQIT-VLPETLPP---TITTLDVSRNALTNLPENLPAALQIMQASRNNlvrLPESLPHFRGEGP 415
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
50-161 |
8.96e-05 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 45.94 E-value: 8.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 50 PTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTIS-----KLEPELcQKLPMLKVLNLQHNELS----QLSD 116
Cdd:COG5238 263 NTTVETLYLSGNQIGaegaIALAKALQGNTTLTSLDLSVNRIGdegaiALAEGL-QGNKTLHTLNLAYNGIGaqgaIALA 341
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 4507531 117 KTFAFCTNLTELHLMSNSI---------QKIKNNPfvkqkNLITLDLSHNGLSS 161
Cdd:COG5238 342 KALQENTTLHSLDLSDNQIgdegaialaKYLEGNT-----TLRELNLGKNNIGK 390
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
480-542 |
1.60e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.20 E-value: 1.60e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 4507531 480 PSLQRLMLRRVALKNVDssPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 542
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLD--DGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
216-620 |
3.63e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 44.45 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 216 CFHAIGRLFGLFLNnvqLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT--TFLGLKWTN---LTMLDLSYNNLNVVG 290
Cdd:PLN00113 9 CPYLIFMLFFLFLN---FSMLHAEELELLLSFKSSINDPLKYLSNWNSSADvcLWQGITCNNssrVVSIDLSGKNISGKI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 291 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLPkiddfsfqwlkCLEHLNMEDNdipg 369
Cdd:PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTsSSLRYLNLSNNNFTGSIPRGSIP-----------NLETLDLSNN---- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 370 iksnMFTGLINLKYlslsNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-----SWLGHLEVLD---LGLN 441
Cdd:PLN00113 151 ----MLSGEIPNDI----GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLvgqipRELGQMKSLKwiyLGYN 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 442 EIGQELTgQEWRGLENIFEIYLSYN----------------KYLQLTRNSFA-LVP----SLQRLmlrrVALKNVDSSPS 500
Cdd:PLN00113 223 NLSGEIP-YEIGGLTSLNHLDLVYNnltgpipsslgnlknlQYLFLYQNKLSgPIPpsifSLQKL----ISLDLSDNSLS 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 501 PFQP-----LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-----ARLWKHANpggpiyflkglshLHILNLE 570
Cdd:PLN00113 298 GEIPelviqLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFsgeipKNLGKHNN-------------LTVLDLS 364
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 4507531 571 SNGFD-EIPVEVFKDLFELKIIdLGLNNLNT-LPASVFNNQvSLKSLNLQKN 620
Cdd:PLN00113 365 TNNLTgEIPEGLCSSGNLFKLI-LFSNSLEGeIPKSLGACR-SLRRVRLQDN 414
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
44-112 |
5.62e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.65 E-value: 5.62e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507531 44 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 112
Cdd:PLN03150 433 FIPNDISKlrHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
48-160 |
6.41e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 43.68 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 48 DLPTnITVLNLTHNQ-LRRLPaaNFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 126
Cdd:PLN00113 450 DMPS-LQMLSLARNKfFGGLP--DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526
|
90 100 110
....*....|....*....|....*....|....
gi 4507531 127 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 160
Cdd:PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
380-443 |
8.58e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 38.27 E-value: 8.58e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 4507531 380 NLKYLSLSNSftSLRTLTNETFVSLAHspLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 443
Cdd:pfam13855 2 NLRSLDLSNN--RLTSLDDGAFKGLSN--LKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
298-367 |
9.47e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 38.27 E-value: 9.47e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 298 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSftkqsislaSLPKIDDFSFQWLKCLEHLNMEDNDI 367
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNN---------LLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
104-284 |
1.05e-03 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 41.31 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 104 LNLQHNELSQLSDktFAFCTNLTELHLMSNSIQKIKNnpFVKQKNLITLDLSHN------GLSS----TKLgtqvqlenl 173
Cdd:cd21340 7 LYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNqiekieNLENlvnlKKL--------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 174 qelLLSNNKIQALksEELDifansSLKKLE--------LSSNQIKEFSPGCFHAIG---RLFGLFLNNVQlgpSLTEKLC 242
Cdd:cd21340 74 ---YLGGNRISVV--EGLE-----NLTNLEelhienqrLPPGEKLTFDPRSLAALSnslRVLNISGNNID---SLEPLAP 140
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 4507531 243 LelanTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 284
Cdd:cd21340 141 L----RNLEQLDASNNQISDLEELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
123-161 |
2.44e-03 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 37.12 E-value: 2.44e-03
10 20 30
....*....|....*....|....*....|....*....
gi 4507531 123 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 161
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTT 39
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
28-50 |
4.00e-03 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 35.68 E-value: 4.00e-03
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
28-54 |
5.68e-03 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 35.37 E-value: 5.68e-03
10 20
....*....|....*....|....*..
gi 4507531 28 CTVSHEVADCSHLKLTQVPDDLPTNIT 54
Cdd:smart00013 6 CNCSGTAVDCSGRGLTEVPLDLPPDTT 32
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
195-451 |
7.64e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 39.65 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 195 ANSSLKKLELSSNQIKEFSPG---CFHAIGRLFGLF---LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSnTTF 268
Cdd:cd00116 49 PQPSLKELCLSLNETGRIPRGlqsLLQGLTKGCGLQeldLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG-LRL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 269 L--GLK--WTNLTMLDLSYNNLNVVGNDSFA----WLPQLEYFFLEYNNIQH-LFSHSLHGL---FNVRYLNLKRSF--T 334
Cdd:cd00116 128 LakGLKdlPPALEKLVLGRNRLEGASCEALAkalrANRDLKELNLANNGIGDaGIRALAEGLkanCNLEVLDLNNNGltD 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507531 335 KQSISLASLPKIddfsfqwLKCLEHLNMEDN-----DIPGIKSNMFTGLINLKYLSLSNSftslrTLTNETFVSLAHSpl 409
Cdd:cd00116 208 EGASALAETLAS-------LKSLEVLNLGDNnltdaGAAALASALLSPNISLLTLSLSCN-----DITDDGAKDLAEV-- 273
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 4507531 410 hilnltknkISKIESdafswlghLEVLDLGLNEIGQELTGQE 451
Cdd:cd00116 274 ---------LAEKES--------LLELDLRGNKFGEEGAQLL 298
|
|
|