|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-430 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 778.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 2 VLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 162 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVD 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 242 VASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNE-ALIE 320
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEkTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 321 KLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDgaKVFSKQP 400
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA--KTMLKDP 398
|
410 420 430
....*....|....*....|....*....|
gi 4507215 401 GRIQRVARGSGVSTRDVQELLTQYTKFAQM 430
Cdd:TIGR01425 399 SRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-442 |
1.41e-169 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 485.48 E-value: 1.41e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 86 LVDPGVKAwTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE 165
Cdd:PRK00771 81 LLGEETEP-LVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 166 MDPVIIASEGVEKFKNEnfEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASV 245
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 246 IVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKH 324
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEaLDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 325 GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDfMSKGNEQESMARLKKLMTIMDSMNDQELDSTD--GAKvfskqpgR 402
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELENPEiiNAS-------R 389
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 4507215 403 IQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFK 442
Cdd:PRK00771 390 IRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMG 429
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-430 |
3.28e-145 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 422.89 E-value: 3.28e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKS-AIDlEEMASGLNKRKMIQHAVFKELV 84
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKErALG-EEVLKSLTPGQQVIKIVHDELV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 85 KLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT 164
Cdd:COG0541 84 ELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEED 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 165 EMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 244
Cdd:COG0541 164 GKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALGLTG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 245 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNElKLDDNEA--LIEKL 322
Cdd:COG0541 244 VILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQE-AIDEEEAekLAKKL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 323 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGtDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKvfskqPGR 402
Cdd:COG0541 323 KKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMG-KLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIIN-----GSR 396
|
410 420
....*....|....*....|....*...
gi 4507215 403 IQRVARGSGVSTRDVQELLTQytkFAQM 430
Cdd:COG0541 397 KRRIAKGSGTTVQDVNRLLKQ---FEQM 421
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
1.69e-143 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 409.66 E-value: 1.69e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 4507215 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
6.70e-105 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 311.40 E-value: 6.70e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 4507215 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-296 |
8.56e-88 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 267.74 E-value: 8.56e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT-CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 4507215 260 LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-430 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 778.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 2 VLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 162 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVD 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 242 VASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNE-ALIE 320
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEkTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 321 KLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDgaKVFSKQP 400
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA--KTMLKDP 398
|
410 420 430
....*....|....*....|....*....|
gi 4507215 401 GRIQRVARGSGVSTRDVQELLTQYTKFAQM 430
Cdd:TIGR01425 399 SRIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-442 |
1.41e-169 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 485.48 E-value: 1.41e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 86 LVDPGVKAwTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE 165
Cdd:PRK00771 81 LLGEETEP-LVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 166 MDPVIIASEGVEKFKNEnfEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASV 245
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 246 IVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKH 324
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEaLDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 325 GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDfMSKGNEQESMARLKKLMTIMDSMNDQELDSTD--GAKvfskqpgR 402
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELENPEiiNAS-------R 389
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 4507215 403 IQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFK 442
Cdd:PRK00771 390 IRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMG 429
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-430 |
3.28e-145 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 422.89 E-value: 3.28e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKS-AIDlEEMASGLNKRKMIQHAVFKELV 84
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKErALG-EEVLKSLTPGQQVIKIVHDELV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 85 KLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT 164
Cdd:COG0541 84 ELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEED 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 165 EMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 244
Cdd:COG0541 164 GKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALGLTG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 245 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNElKLDDNEA--LIEKL 322
Cdd:COG0541 244 VILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQE-AIDEEEAekLAKKL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 323 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGtDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKvfskqPGR 402
Cdd:COG0541 323 KKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMG-KLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIIN-----GSR 396
|
410 420
....*....|....*....|....*...
gi 4507215 403 IQRVARGSGVSTRDVQELLTQytkFAQM 430
Cdd:COG0541 397 KRRIAKGSGTTVQDVNRLLKQ---FEQM 421
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
1.69e-143 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 409.66 E-value: 1.69e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 4507215 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
6-433 |
6.22e-116 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 348.51 E-value: 6.22e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVK 85
Cdd:TIGR00959 4 LSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 86 LVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY-YQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT 164
Cdd:TIGR00959 84 ILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYlKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 165 EMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 244
Cdd:TIGR00959 164 GQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 245 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLK 323
Cdd:TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEvVDEEEAKKLAEKMK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 324 HGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKvfskqPGRI 403
Cdd:TIGR00959 324 KGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILN-----PSRR 398
|
410 420 430
....*....|....*....|....*....|
gi 4507215 404 QRVARGSGVSTRDVQELLTQYTKFAQMVKK 433
Cdd:TIGR00959 399 KRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
102-294 |
4.31e-106 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 314.31 E-value: 4.31e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 4507215 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
6.70e-105 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 311.40 E-value: 6.70e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 4507215 262 AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-296 |
8.56e-88 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 267.74 E-value: 8.56e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT-CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 4507215 260 LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
9-296 |
3.28e-64 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 211.11 E-value: 3.28e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 9 KITSALRSLSNATIINEEVLNamlkEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGlnkrKMIQHAVFKELVKLVD 88
Cdd:PRK10416 30 NFGEGINGLFAKKKIDEDLLE----ELEELLIEADVGVETTEEIIEELRERVKRKNLKDP----EELKELLKEELAEILE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 89 PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGwKTCLICA-DTFRAGAFDQLKQNATKARIPFYGSYTEMD 167
Cdd:PRK10416 102 PVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAAgDTFRAAAIEQLQVWGERVGVPVIAQKEGAD 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 168 PVIIASEGVEKFKNENFEIIIVDTSGR-HKQEDsLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKV 240
Cdd:PRK10416 181 PASVAFDAIQAAKARGIDVLIIDTAGRlHNKTN-LMEELKKIKRVIKkadpdaPHEVLLVLDATTGQNALSQAKAFHEAV 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 4507215 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296
Cdd:PRK10416 260 GLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
8-296 |
2.59e-63 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 208.34 E-value: 2.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 8 RKITSALRSL-SNATIINEEVLNamlkEVCTALLEADVNI----KLVKQLRENVKsaidleemASGLNKRKMIQHAVFKE 82
Cdd:COG0552 14 SGLGEKLKSLfSGKKKIDEDLLE----ELEELLIEADVGVetteEIIEELRERVK--------RKKLKDPEELKEALKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 83 LVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
Cdd:COG0552 82 LLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 163 YTEMDPVIIASEGVEKFKNENFEIIIVDTSGR-HKQEDsLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235
Cdd:COG0552 162 KEGADPAAVAFDAIQAAKARGADVVIIDTAGRlHNKKN-LMEELKKIKRVIKkldpdaPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507215 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-285 |
5.89e-61 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 198.21 E-value: 5.89e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180
....*....|....*....|....
gi 4507215 262 AVAATKSPIIFIGTGEHIDDFEPF 285
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
23-295 |
3.05e-59 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 196.71 E-value: 3.05e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 23 INEEVLNamlkEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKA-WTPTKGKQ 101
Cdd:TIGR00064 2 DDEDFFE----ELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLeLIVEENKP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:TIGR00064 78 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Cdd:TIGR00064 158 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAK 237
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 4507215 256 GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295
Cdd:TIGR00064 238 GGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
19-296 |
3.25e-57 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 193.27 E-value: 3.25e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 19 NATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTP-- 96
Cdd:PRK14974 54 KITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIee 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 97 --TKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF----YGSytemDPVI 170
Cdd:PRK14974 134 ikSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVikhkYGA----DPAA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 171 IASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKL 250
Cdd:PRK14974 210 VAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKV 289
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 4507215 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296
Cdd:PRK14974 290 DADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
102-294 |
1.07e-54 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 182.00 E-value: 1.07e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 4507215 256 GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
8-296 |
1.60e-36 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 138.46 E-value: 1.60e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 8 RKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEmasglnkrkmIQHAVFKELVKLV 87
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEE----------AWRALLEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 88 DPGVKAWTPTKGkqnVIMFVGLQGSGKTTTCSKLAYYY-QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEM 166
Cdd:COG1419 154 PVAEDPLLDEGG---VIALVGPTGVGKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 167 DpviiASEGVEKFKneNFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI-GQACEAQAKAFKDkVDVASV 245
Cdd:COG1419 231 E----LKEALERLR--DKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSATTkYEDLKEIVEAFSS-LGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 4507215 246 IVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKLLG 296
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
326-429 |
7.71e-33 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 120.19 E-value: 7.71e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 326 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGtdfmSKGNEQESMARLKKLMTIMDSMNDQELDSTDgakvfSKQPGRIQR 405
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMG----KKDDDIDSEKKLKRIEAIIDSMTPKERDNPD-----IINASRKRR 71
|
90 100
....*....|....*....|....
gi 4507215 406 VARGSGVSTRDVQELLTQYTKFAQ 429
Cdd:pfam02978 72 IARGSGTSVQEVNRLLKQFKQMKK 95
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-282 |
7.22e-31 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 118.49 E-value: 7.22e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKtCLICA-DTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFR-VLIAAcDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS----------VIVTKLD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSpsdnprlidgIVLTKFD 160
|
170 180 190
....*....|....*....|....*....|..
gi 4507215 252 G-HAKGGGALSAVAATKSPIIFIGTGEHIDDF 282
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDL 192
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-294 |
4.32e-26 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 104.94 E-value: 4.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 103 VIMFVGLQGSGKTTTCSKLAYYYQ-RKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVEKFKn 181
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPED----LADALERLS- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 182 eNFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASiGQACEAQ--AKAFKDkVDVASVIVTKLDGHAKGGGA 259
Cdd:cd17873 77 -DRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAT-TKAKDLKeiIERFSP-LGYRGLILTKLDETTSLGSV 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 4507215 260 LSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKL 294
Cdd:cd17873 154 LSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
3-296 |
6.91e-23 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 100.74 E-value: 6.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 3 LADLGRKITSaLRSL------SNATIINEEVLNAMLKEvctALLEADVNIKLVKQLRENVksaidLEEMAsglNKRKMIQ 76
Cdd:PRK05703 132 LDELRDELKE-LKNLledqlsGLRQVERIPPEFAELYK---RLKRSGLSPEIAEKLLKLL-----LEHMP---PRERTAW 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 77 HAVFKELVKLVDPGVKAwtpTKGKQNVIMFVGLQGSGKTTTCSKLA----YYYQRKgwKTCLICADTFRAGAFDQLKQNA 152
Cdd:PRK05703 200 RYLLELLANMIPVRVED---ILKQGGVVALVGPTGVGKTTTLAKLAaryaLLYGKK--KVALITLDTYRIGAVEQLKTYA 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 153 TKARIPFYGSYTEMDpviiASEGVEKFKneNFEIIIVDTSGRHKQEDSLFEEmLQ--VANAIQPDNIVYVMDASIG-QAC 229
Cdd:PRK05703 275 KIMGIPVEVVYDPKE----LAKALEQLR--DCDVILIDTAGRSQRDKRLIEE-LKalIEFSGEPIDVYLVLSATTKyEDL 347
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4507215 230 EAQAKAFKdKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKLLG 296
Cdd:PRK05703 348 KDIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
1.11e-18 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 80.20 E-value: 1.11e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 4507215 6 LGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVK-SAIDLEEmasgLNKRKMIQHAVFKEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLReKAVGEKK----LKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
2.07e-15 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 71.04 E-value: 2.07e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4507215 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIdLEEMASGLNKRKMIQHAVFKELVKLV 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKA-KGEVLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
46-295 |
5.47e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 76.93 E-value: 5.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 46 IKLVKQLRENVKSAIDLEEMASGLNKR-----KMIQHAVFKELVKL------VDPGVKAWTPtKGKQNVIMFVGLQGSGK 114
Cdd:PRK12724 158 QRLGERLVREGMSQSYVEEMASKLEERlspvdQGRNHNVTERAVTYleervsVDSDLFSGTG-KNQRKVVFFVGPTGSGK 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 115 TTTCSKLAY-YYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYgsytemdpviiASEGVEKFKN----ENFEIIIV 189
Cdd:PRK12724 237 TTSIAKLAAkYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----------PVKDIKKFKEtlarDGSELILI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 190 DTSG-RHKQEDSL-----FEEMLQVANAIQpdNIVYVMDASIGQACEAQAKAFkDKVDVASVIVTKLDGHAKGGGALSAV 263
Cdd:PRK12724 306 DTAGySHRNLEQLermqsFYSCFGEKDSVE--NLLVLSSTSSYHHTLTVLKAY-ESLNYRRILLTKLDEADFLGSFLELA 382
|
250 260 270
....*....|....*....|....*....|..
gi 4507215 264 AATKSPIIFIGTGEHIddfePFKTQPFISKLL 295
Cdd:PRK12724 383 DTYSKSFTYLSVGQEV----PFDILNATKNLM 410
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
39-193 |
2.97e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 73.14 E-value: 2.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 39 LLEADVNIKLVKQLRENVKSAIDLEE-MASGLNK-RKMIQHAVFKElvklvdpgvkawtPTKGKQNVIMFVGLQGSGKTT 116
Cdd:TIGR03499 143 LLEAGVSEELARELLEKLPEDADAEDaWRWLREAlEGMLPVKPEED-------------PILEQGGVIALVGPTGVGKTT 209
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 4507215 117 TCSKLA--YYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVEKFKneNFEIIIVDTSG 193
Cdd:TIGR03499 210 TLAKLAarFALEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE----LREALDRLR--DKDLILIDTAG 282
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
104-279 |
2.87e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 65.47 E-value: 2.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 104 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMdpviIASEGVEKFKNE- 182
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKEEa 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDkVDVASVIVTKLDGHAKGGGALS 261
Cdd:PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGELLK 398
|
170
....*....|....*...
gi 4507215 262 AVAATKSPIIFIGTGEHI 279
Cdd:PRK11889 399 IPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
104-279 |
1.00e-10 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.46 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 104 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMdpviIASEGVEKFKNE- 182
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKEEa 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDkVDVASVIVTKLDGHAKGGGALS 261
Cdd:PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGELLK 232
|
170
....*....|....*...
gi 4507215 262 AVAATKSPIIFIGTGEHI 279
Cdd:PRK06731 233 IPAVSSAPIVLMTDGQDV 250
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
103-295 |
5.57e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 61.74 E-value: 5.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 103 VIMFVGLQGSGKTTTCSKL-AYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKfk 180
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLaARCVAREGAdQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK-- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 181 nenfEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMD-ASIGQACEAQAKAFKDKV--DVASVIVTKLDGHAKGG 257
Cdd:PRK14723 265 ----HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNaASHGDTLNEVVHAYRHGAgeDVDGCIITKLDEATHLG 340
|
170 180 190
....*....|....*....|....*....|....*....
gi 4507215 258 GALSAVAATKSPIIFIGTGEHI-DDFEPFKTQPFISKLL 295
Cdd:PRK14723 341 PALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-208 |
8.73e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.38 E-value: 8.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIiasegvEKF 179
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL------ALA 74
|
90 100
....*....|....*....|....*....
gi 4507215 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQV 208
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLE 103
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-284 |
3.99e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 58.59 E-value: 3.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDpviiASEGVEKFKNE 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAE----LEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 183 N-FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALS 261
Cdd:PRK12726 284 NcVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYT 363
|
170 180
....*....|....*....|....*
gi 4507215 262 AVAATKSPIIFIGTGEHIDD--FEP 284
Cdd:PRK12726 364 VMQETNLPVLYMTDGQNITEniFRP 388
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
103-293 |
6.49e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.81 E-value: 6.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 103 VIMFVGLQGSGKTTTCSKLAYY-YQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEgvekFK 180
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcVMRFGAsKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE----LR 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 181 NENfeIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDA-SIGQACEAQAKAFKDKV--------DVASVIVTKLD 251
Cdd:PRK14722 215 NKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAtSHGDTLNEVVQAYRSAAgqpkaalpDLAGCILTKLD 292
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 4507215 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISK 293
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK 334
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-281 |
1.15e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 54.23 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 103 VIMFVGLQGSGKTTTCSKLAYYY--QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYgsytEMDPVIIASEGVEKFK 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 181 neNFEIIIVDTSGRhKQEDSLFEEMLQVANAIQPDNIVYVM--DASIGQACEAqAKAFKdKVDVASVIVTKLDGHAKGGG 258
Cdd:PRK12727 428 --DYKLVLIDTAGM-GQRDRALAAQLNWLRAARQVTSLLVLpaNAHFSDLDEV-VRRFA-HAKPQGVVLTKLDETGRFGS 502
|
170 180
....*....|....*....|...
gi 4507215 259 ALSAVAATKSPIIFIGTGEHIDD 281
Cdd:PRK12727 503 ALSVVVDHQMPITWVTDGQRVPD 525
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-323 |
2.14e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 52.98 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 100 KQNVIMFVGLQGSGKTTTCSKLAYYY----QRKGWKTCLICADTFRAGAfdqlkqnatKARIPFYGsytemDPVIIASEG 175
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGA---------KKQIQTYG-----DIMGIPVKA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 176 VEKFKN--------ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE-----AQAKAFKDKvdv 242
Cdd:PRK12723 239 IESFKDlkeeitqsKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDvkeifHQFSPFSYK--- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 243 aSVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG----EHIDDFEPFKtqpfiskllgmgdiegLIDKVNELKLDDNEAL 318
Cdd:PRK12723 316 -TVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGqivpHNISIAEPLT----------------FIKKINGYRISDDAEF 378
|
....*
gi 4507215 319 IEKLK 323
Cdd:PRK12723 379 IRKLK 383
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
111-274 |
3.21e-05 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 45.41 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 111 GSGKTTTCSKLAYYYQRKGWKTCLICAD-----TFRAGA---FDQLKQNATKARIPfygsYTEMDPVIIASEG------- 175
Cdd:pfam01656 9 GVGKTTLAANLARALARRGLRVLLIDLDpqsnnSSVEGLegdIAPALQALAEGLKG----RVNLDPILLKEKSdeggldl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 176 ------VEKFKN-------------------ENFEIIIVDTSGrhkqedSLFEEML-------QVANAIQPDnIVYVMDA 223
Cdd:pfam01656 85 ipgnidLEKFEKellgprkeerlrealealkEDYDYVIIDGAP------GLGELLRnaliaadYVIIPLEPE-VILVEDA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 4507215 224 S-IGQACEAQAKAFKD-KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIG 274
Cdd:pfam01656 158 KrLGGVIAALVGGYALlGLKIIGVVLNKVDGDNHGKLLKEALEELLRGLPVLG 210
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
100-279 |
1.51e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 44.17 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 100 KQNVIMFVGLQGSGKTTTCSKLAYY-YQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177
Cdd:PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARaVIRHGAdKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 178 KfknenfEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKdKVDVASVIVTKLDGHAKG 256
Cdd:PRK14721 270 K------HMVLIDTVGMSQRDQMLAEQIAMLSQCgTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASL 342
|
170 180
....*....|....*....|...
gi 4507215 257 GGALSAVAATKSPIIFIGTGEHI 279
Cdd:PRK14721 343 GIALDAVIRRKLVLHYVTNGQKV 365
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
111-255 |
1.96e-04 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 41.37 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4507215 111 GSGKTTTCSKLAYYYQRKGWKTCLICADTfragafdQlkQNATKARipfygsytemdpviiasegvekfknenFEIIIVD 190
Cdd:cd02042 11 GVGKTTLAVNLAAALALRGKRVLLIDLDP-------Q--GSLTSWL---------------------------YDYILID 54
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4507215 191 TSGRHkqeDSLFEEMLQVANAI----QPDniVYVMDASIG--QACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Cdd:cd02042 55 TPPSL---GLLTRNALAAADLVlipvQPS--PFDLDGLAKllDTLEELKKQLNPPLLILGILLTRVDPRTK 120
|
|
| MobB |
cd03116 |
molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace ... |
103-131 |
7.70e-03 |
|
molybdopterin-guanine dinucleotide biosynthesis protein B; Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In Escherichia coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Pssm-ID: 349770 [Multi-domain] Cd Length: 157 Bit Score: 37.23 E-value: 7.70e-03
10 20
....*....|....*....|....*....
gi 4507215 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWK 131
Cdd:cd03116 2 IVGVVGKSGSGKTTLIEKLIPELKARGLR 30
|
|
| Tda10 |
COG4240 |
Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) [General ... |
108-133 |
8.70e-03 |
|
Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) [General function prediction only];
Pssm-ID: 443382 Cd Length: 298 Bit Score: 38.29 E-value: 8.70e-03
10 20
....*....|....*....|....*.
gi 4507215 108 GLQGSGKTTTCSKLAYYYQRKGWKTC 133
Cdd:COG4240 54 GGQGSGKSTLAAFLALILEQLGLRVA 79
|
|
| |
