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Conserved domains on  [gi|331284236|ref|NP_002997|]
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P-selectin glycoprotein ligand 1 isoform 2 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rne super family cl35953
ribonuclease E; Reviewed
 120-279 5.04e-11

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 64.68  E-value: 5.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  120 EIQTTQPAATEAQTTqPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 199
Cdd:PRK10811  862 EEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  200 E-AQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAME-ALSTEPSATEALSMEPT 277
Cdd:PRK10811  941 EvAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVApAQVPEATVEHNHATAPM 1020


                  ..
gi 331284236  278 TK 279
Cdd:PRK10811 1021 TR 1022
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 120-279 5.04e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 64.68  E-value: 5.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  120 EIQTTQPAATEAQTTqPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 199
Cdd:PRK10811  862 EEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  200 E-AQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAME-ALSTEPSATEALSMEPT 277
Cdd:PRK10811  941 EvAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVApAQVPEATVEHNHATAPM 1020


                  ..
gi 331284236  278 TK 279
Cdd:PRK10811 1021 TR 1022
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 112-241 1.21e-04

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 44.32  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  112 LSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPL--------AATEAQTTPPAATEAQt 183
Cdd:NF033875   36 LATDNVQAAELDTQPGTTTVQPDNPDPQSGSETPKTAVSEEATVQKDTTSQPTKVeevaseknGAEQSSATPNDTTNAQ- 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284236  184 tQPTgLEAQTTA---PAAMEAQTTAPAameAQTTPPAAMEAQTTQTTAMEAQTTAPEATEA 241
Cdd:NF033875  115 -QPT-VGAEKSAqeqPVVSPETTNEPL---GQPTEVAPAENEANKSTSIPKEFETPDVDKA 170
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
123-249 2.12e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.03  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  123 TTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPlAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQ 202
Cdd:pfam05539 185 SHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS-SNPEPQTEPPPSQRGPSGSPQ--HPPSTTSQDQSTT 261

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 331284236  203 TTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTAT 249
Cdd:pfam05539 262 GDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTAT 308
NDFIP2 cd22306
NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, ...
 180-270 9.62e-03

NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, developmentally down-regulated protein 4)-family interacting proteins (NDFIPs) are adaptor proteins that recruit NEDD4 E3 ligases to specific substrate proteins, which leads to the ubiquitylation and subsequent degradation of these proteins. They also act as activators of the E3 ligase activity by releasing NEDD4 ligase from its auto-inhibitory conformation. NDFIP2 may play a role in protein trafficking.


Pssm-ID: 412070 [Multi-domain]  Cd Length: 229  Bit Score: 37.56  E-value: 9.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 180 EAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTT---APEATEAQTTQPTATEAQTTPL 256
Cdd:cd22306   10 EDDPSESSASEQPSTSTQVQESSSNPAPETDAPPPPYSSITAGATAAPGTETQSEfypVPPPYSVATSLPTYDEAEKAKA 89

                         90
                 ....*....|....
gi 331284236 257 AAMEALSTEPSATE 270
Cdd:cd22306   90 AAMAAAAAEVAQRE 103
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 120-279 5.04e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 64.68  E-value: 5.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  120 EIQTTQPAATEAQTTqPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 199
Cdd:PRK10811  862 EEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  200 E-AQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAME-ALSTEPSATEALSMEPT 277
Cdd:PRK10811  941 EvAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVApAQVPEATVEHNHATAPM 1020


                  ..
gi 331284236  278 TK 279
Cdd:PRK10811 1021 TR 1022
rne PRK10811
ribonuclease E; Reviewed
 120-277 2.45e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 62.75  E-value: 2.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  120 EIQTTQPAATEAQTTQPVPTEAQTTPLA-ATEAQTTRLTATEAQTTPLAATEAQttPPAATEAQTTQPTGLEAQTTAPAA 198
Cdd:PRK10811  852 DVQVEEQREAEEVQVQPVVAEVPVAAAVePVVSAPVVEAVAEVVEEPVVVAEPQ--PEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  199 MEAQTTAPAAME--AQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEP 276
Cdd:PRK10811  930 VITESDVAVAQEvaEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009


                  .
gi 331284236  277 T 277
Cdd:PRK10811 1010 T 1010
rne PRK10811
ribonuclease E; Reviewed
 124-298 2.82e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 62.36  E-value: 2.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  124 TQPAATEAQTtQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQT 203
Cdd:PRK10811  848 VRPQDVQVEE-QREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV--VVETTHPEVIAAPV 924

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  204 TA-PAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGL 282
Cdd:PRK10811  925 TEqPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                         170
                  ....*....|....*.
gi 331284236  283 FIPFSVSSVTHKGIPM 298
Cdd:PRK10811 1005 QVPEATVEHNHATAPM 1020
PRK10856 PRK10856
cytoskeleton protein RodZ;
156-262 5.44e-08

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 54.26  E-value: 5.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 156 LTATEAQTTPLaaTEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAameaQTTQTTAMEAQTTA 235
Cdd:PRK10856 154 LSQNSGQSVPL--DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS----QANVDTAATPAPAA 227

                         90       100
                 ....*....|....*....|....*..
gi 331284236 236 PEATEAQTTQPTATEAQTTPLAAMEAL 262
Cdd:PRK10856 228 PATPDGAAPLPTDQAGVSTPAADPNAL 254
rne PRK10811
ribonuclease E; Reviewed
 136-278 2.39e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.12  E-value: 2.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  136 PVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQ-PTGLEAQTTAPAAMEAQTTAPAAMEAQ-T 213
Cdd:PRK10811  846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVeEPVVVAEPQPEEVVVVETTHPEVIAAPvT 925

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 331284236  214 TPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTT 278
Cdd:PRK10811  926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990
PRK10856 PRK10856
cytoskeleton protein RodZ;
105-218 4.09e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.57  E-value: 4.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 105 ELANMGNLStdSAAMEIQTTQPAATEAQTTQPVPTeaQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATeAQTT 184
Cdd:PRK10856 142 EITTMADQS--SAELSQNSGQSVPLDTSTTTDPAT--TPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQAN 216

                         90       100       110
                 ....*....|....*....|....*....|....
gi 331284236 185 QPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAA 218
Cdd:PRK10856 217 VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAAD 250
PRK10856 PRK10856
cytoskeleton protein RodZ;
166-274 7.79e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.41  E-value: 7.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 166 LAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQTTAPAAmeaQTTPPAAMEAQTTQTTAMeAQTTAPEATEAQTTQ 245
Cdd:PRK10856 154 LSQNSGQSVPLDTSTTTDPATT--PAPAAPVDTTPTNSQTPAV---ATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAA 227

                         90       100
                 ....*....|....*....|....*....
gi 331284236 246 PTATEAQTTPLAAMEALSTEPSATEALSM 274
Cdd:PRK10856 228 PATPDGAAPLPTDQAGVSTPAADPNALVM 256
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 166-269 1.35e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.66  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  166 LAATEAQTTPPAATEAQTTQPTgleAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQ 245
Cdd:PRK12270   33 FADYGPGSTAAPTAAAAAAAAA---ASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109

                          90       100       110
                  ....*....|....*....|....*....|..
gi 331284236  246 PTATEAQTTPL---AA-----MEALSTEPSAT 269
Cdd:PRK12270  110 AAAVEDEVTPLrgaAAavaknMDASLEVPTAT 141
rne PRK10811
ribonuclease E; Reviewed
 56-236 1.59e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.42  E-value: 1.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236   56 ETEPPEMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTElanmgnlstdSAAMEIQTTQPAATEAQ-TT 134
Cdd:PRK10811  857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQP----------EEVVVVETTHPEVIAAPvTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  135 QPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTtqptgleaqTTAPAAMEAQTTAPAAMEAQTT 214
Cdd:PRK10811  927 QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEV---------VAQPAAPVVAEVAAEVETVTAV 997

                         170       180
                  ....*....|....*....|..
gi 331284236  215 PPAAMEAQTTQTTAMEAQTTAP 236
Cdd:PRK10811  998 EPEVAPAQVPEATVEHNHATAP 1019
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 126-277 2.16e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 2.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 126 PAATEAQTTQPVpteAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTA 205
Cdd:PRK07994 361 PAAPLPEPEVPP---QSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284236 206 PAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPT 277
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKT 509
rne PRK10811
ribonuclease E; Reviewed
 117-248 2.17e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 50.04  E-value: 2.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  117 AAMEIQTTQPAATEAqtTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAP 196
Cdd:PRK10811  881 PVVSAPVVEAVAEVV--EEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETAD 958

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 331284236  197 AAMEAQTTAPAAMEAQT-TPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTA 248
Cdd:PRK10811  959 IEEAAETAEVVVAEPEVvAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATV 1011
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 135-239 3.95e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.12  E-value: 3.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  135 QPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQ--TTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQ 212
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPpaAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

                          90       100       110
                  ....*....|....*....|....*....|
gi 331284236  213 TTP---PAAMEAQTtqttaMEAQTTAPEAT 239
Cdd:PRK12270  117 VTPlrgAAAAVAKN-----MDASLEVPTAT 141
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
61-275 5.68e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 48.45  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  61 EMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANmgnlSTDSAAMEIQTTQPAATEAQTTQPVPTE 140
Cdd:PRK12727  56 ETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVAS----AAEDMIAAMALRQPVSVPRQAPAAAPVR 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 141 AQTTPLAATEAQttrltateaqttplAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAME 220
Cdd:PRK12727 132 AASIPSPAAQAL--------------AHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAA 197

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 331284236 221 AqtTQTTAMEAQTTAPEATEAQTTQPTATeAQTTPLAAMEALSTEPSATEALSME 275
Cdd:PRK12727 198 A--LAAHAAYAQDDDEQLDDDGFDLDDAL-PQILPPAALPPIVVAPAAPAALAAV 249
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 122-268 6.66e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.32  E-value: 6.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 122 QTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEA 201
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 331284236 202 QTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQ--TTPLAAMEALSTEPSA 268
Cdd:PRK07994 442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEpvATPKALKKALEHEKTP 510
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 148-281 1.14e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 148 ATEAQTTRLTATE--AQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQ 225
Cdd:PRK07764 370 DERGLLARLERLErrLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 331284236 226 TTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRG 281
Cdd:PRK07764 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 157-259 1.25e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.58  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  157 TATEAQTTPlAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTT-- 234
Cdd:PRK12270   42 AAPTAAAAA-AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTpl 120

                          90       100       110
                  ....*....|....*....|....*....|.
gi 331284236  235 --APEAT----EAQTTQPTATEAQTTPLAAM 259
Cdd:PRK12270  121 rgAAAAVaknmDASLEVPTATSVRAVPAKLL 151
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
141-253 2.71e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 46.38  E-value: 2.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 141 AQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTgleaqTTAPAAMEAQTTAPAAMEAQTTPPAAME 220
Cdd:PRK11907  12 ALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADN-----TETPVAATTAAEAPSSSETAETSDPTSE 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 331284236 221 AQTTqttameAQTTAPEATEAQTTQPTATEAQT 253
Cdd:PRK11907  87 ATDT------TTSEARTVTPAATETSKPVEGQT 113
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 116-228 5.29e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 45.49  E-value: 5.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 116 SAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATE--AQTTRLTATEAQTTPLAATEAQTTPP----AATEAQTTQPTGL 189
Cdd:PHA03269  34 SAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPdlAQAPTPAASEKFDPAPAPHQAASRAPdpavAPQLAAAPKPDAA 113

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 331284236 190 EAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTA 228
Cdd:PHA03269 114 EAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 142-271 8.13e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 44.70  E-value: 8.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 142 QTTPLAATEAQTTRLTATEAQTTPLAATEAQTTP---PAA----TEAQTTQPTGLEAQTTAP----AAMEAQTTAPAAME 210
Cdd:PRK08691 373 ENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPvqtASAaampSEGKTAGPVSNQENNDVPpwedAPDEAQTAAGTAQT 452

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284236 211 AQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQ-PTATEAQTTPLAamEALSTEPSATEA 271
Cdd:PRK08691 453 SAKSIQTASEAETPPENQVSKNKAADNETDAPLSEvPSENPIQATPND--EAVETETFAHEA 512
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
100-255 9.43e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 9.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 100 TELTteLANMGNLSTDSaameiQTTQPAATEAQTTQPVPTEaqttPLAATEAQTTrlTATEAQTTPLAATEAQTTPPAAT 179
Cdd:PRK14971 352 VELT--LIQLAQLTQKG-----DDASGGRGPKQHIKPVFTQ----PAAAPQPSAA--AAASPSPSQSSAAAQPSAPQSAT 418

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 331284236 180 EAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTP 255
Cdd:PRK14971 419 QPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQK 494
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 113-268 1.12e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 1.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 113 STDSAAMEIQTTQPAAT-EAQTTQPVPTEAQTTPLAATEAQTTRLTATEaqttpLAATEAQTTPPAATEAQTTQPTGLEA 191
Cdd:PRK07994 374 SAAPAASAQATAAPTAAvAPPQAPAVPPPPASAPQQAPAVPLPETTSQL-----LAARQQLQRAQGATKAKKSEPAAASR 448

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 331284236 192 QTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSA 268
Cdd:PRK07994 449 ARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDP 525
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 112-241 1.21e-04

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 44.32  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  112 LSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPL--------AATEAQTTPPAATEAQt 183
Cdd:NF033875   36 LATDNVQAAELDTQPGTTTVQPDNPDPQSGSETPKTAVSEEATVQKDTTSQPTKVeevaseknGAEQSSATPNDTTNAQ- 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284236  184 tQPTgLEAQTTA---PAAMEAQTTAPAameAQTTPPAAMEAQTTQTTAMEAQTTAPEATEA 241
Cdd:NF033875  115 -QPT-VGAEKSAqeqPVVSPETTNEPL---GQPTEVAPAENEANKSTSIPKEFETPDVDKA 170
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 159-275 1.29e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 43.95  E-value: 1.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 159 TEAQTTPLAATEAQTTP--------PAATEAQTTQPTGLEAQTTA------------PAAMEAQTTAPAAMEAQTTPP-- 216
Cdd:PHA03269  19 IANLNTNIPIPELHTSAatqkpdpaPAPHQAASRAPDPAVAPTSAasrkpdlaqaptPAASEKFDPAPAPHQAASRAPdp 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 331284236 217 --AAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATeAQTTPLAAMEALSTEPSATEALSME 275
Cdd:PHA03269  99 avAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSA-ASKKPDPAAHTQHSPPPFAYTRSME 158
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 126-238 1.49e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 1.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 126 PAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTA 205
Cdd:PRK07764 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                         90       100       110
                 ....*....|....*....|....*....|...
gi 331284236 206 PAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEA 238
Cdd:PRK07764 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 126-262 1.59e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 126 PAATEAQTTQPVPTEAQTtPLAATEAQTTrlTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTA 205
Cdd:PRK14951 371 EAAAPAEKKTPARPEAAA-PAAAPVAQAA--AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 331284236 206 PAAMEAQTTP-----PAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTP-LAAMEAL 262
Cdd:PRK14951 448 APAPPAQAAPetvaiPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQqLAAAEAI 510
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
71-262 1.73e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  71 PLTGPGTPESTTVEPAARRSTGldAGGAVTELTTELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATE 150
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVP--APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 151 AQTTRLTATEAQTTPL---AATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM-EAQTTAPAAMEAQTTPPAAMEAQTTQT 226
Cdd:PRK07003 438 RGDDAADGDAPVPAKAnarASADSRCDERDAQPPADSGSASAPASDAPPDAAfEPAPRAAAPSAATPAAVPDARAPAAAS 517

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 331284236 227 TAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEAL 262
Cdd:PRK07003 518 REDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAL 553
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 81-266 1.91e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  81 TTVEPA-ARRSTGLDAGGAVTELTTELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPteAQTTPL------------- 146
Cdd:PRK14951 268 TVVETAdELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARLAALMP--ADETQLlysiclhgraelg 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 147 ------AATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGlEAQTTAPAAMEAqtTAPAAMEAQTTPPAAME 220
Cdd:PRK14951 346 lapdeyAALTMVLLRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAP-VAQAAAAPAPAA--APAAAASAPAAPPAAAP 422

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 331284236 221 AQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEP 266
Cdd:PRK14951 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP 468
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 128-256 2.05e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 2.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 128 ATEAQTTQPVPTEAQTTPLAATeaqttrlTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPA 207
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAA-------PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 331284236 208 AMEAQTTPPAAMEAQTTQTTAMEAQTTAPE-----ATEAQTTQPTATEAQTTPL 256
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEpavasAAPAPAAAPAAARLTPTEE 493
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
117-231 2.34e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 2.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 117 AAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQttpPAATEAQTTQPTGLEAQTTAP 196
Cdd:PRK12323 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL---AAARQASARGPGGAPAPAPAP 454

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284236 197 AAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEA 231
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
125-276 3.04e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 3.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 125 QPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAqTTAPAAMEAQTT 204
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR-GDDAADGDAPVP 450

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284236 205 APAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEP 276
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
73-230 4.18e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.04  E-value: 4.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  73 TGPGTPESTTVEPAARRSTGLDAggaVTELTTELANMGNLSTDSaameIQTTQPAATEAQTTQPVPTEAQTTPLAATEA- 151
Cdd:PRK13335  18 TGAITVTTQSVKAEKIQSTKVDK---VPTLKAERLAMINITAGA----NSATTQAANTRQERTPKLEKAPNTNEEKTSAs 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 152 ---QTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTgleAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTA 228
Cdd:PRK13335  91 kieKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPK---TKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPK 167


                 ..
gi 331284236 229 ME 230
Cdd:PRK13335 168 YE 169
PRK10856 PRK10856
cytoskeleton protein RodZ;
90-181 4.99e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.94  E-value: 4.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  90 STGLDAGGAVTELTTE--LANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTeAQTTPLAATEAQTTRLTATEAQTTPLA 167
Cdd:PRK10856 161 SVPLDTSTTTDPATTPapAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAAPATPDGAAPLPT 239

                         90
                 ....*....|....
gi 331284236 168 ATEAQTTPPAATEA 181
Cdd:PRK10856 240 DQAGVSTPAADPNA 253
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
123-213 5.73e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 42.15  E-value: 5.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 123 TTQPAATEAQTTQPVPTeaqtTPLAATEAQTTRLTATEAQT---TPLAATEAQTTPPAATEAQTTQPTGLEAQTT---AP 196
Cdd:PRK11907  21 SNPKLAQAEEIVTTTPA----TSTEAEQTTPVESDATEEADnteTPVAATTAAEAPSSSETAETSDPTSEATDTTtseAR 96

                         90
                 ....*....|....*..
gi 331284236 197 AAMEAQTTAPAAMEAQT 213
Cdd:PRK11907  97 TVTPAATETSKPVEGQT 113
PRK10856 PRK10856
cytoskeleton protein RodZ;
102-184 9.35e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.17  E-value: 9.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 102 LTTELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEA 181
Cdd:PRK10856 164 LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAG 243


                 ...
gi 331284236 182 QTT 184
Cdd:PRK10856 244 VST 246
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
135-271 1.13e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 135 QPVPTEAQTTPlaATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMeaqTTAPAAMeaqtt 214
Cdd:PRK12323 364 RPGQSGGGAGP--ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR---SPAPEAL----- 433

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 331284236 215 pPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEA 271
Cdd:PRK12323 434 -AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
62-251 1.35e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  62 MLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANMGnlstdSAAMEIQTTQPAATEAQTTQPVPTEA 141
Cdd:PRK07003 355 MLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-----GAAGAALAPKAAAAAAATRAEAPPAA 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 142 QTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQP-TGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAME 220
Cdd:PRK07003 430 PAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSgSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPD 509

                        170       180       190
                 ....*....|....*....|....*....|.
gi 331284236 221 AQTTQTTAMEAQTTAPEATEAQTTQPTATEA 251
Cdd:PRK07003 510 ARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
PHA03247 PHA03247
large tegument protein UL36; Provisional
 55-276 1.42e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236   55 PETEPPEMLRNS-TDTTPLTGPGTPESTTVEPAARRS-TGLDAGGAVTELTTELANMGNLSTDSAAMEIQTTQPAAT--- 129
Cdd:PHA03247 2708 PEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVpAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTrpa 2787

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  130 -----EAQTTQPVPTEAQTTPLAAT-EAQTTRLTATEAQTTPLAATEAQTTPPAATE-AQTTQPTGLEAQTTAPAAMEAQ 202
Cdd:PHA03247 2788 vaslsESRESLPSPWDPADPPAAVLaPAAALPPAASPAGPLPPPTSAQPTAPPPPPGpPPPSLPLGGSVAPGGDVRRRPP 2867

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 331284236  203 TTAPAAMEA-QTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEP 276
Cdd:PHA03247 2868 SRSPAAKPAaPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
123-249 2.12e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.03  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236  123 TTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPlAATEAQTTPPAATEAQTTQPTglEAQTTAPAAMEAQ 202
Cdd:pfam05539 185 SHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS-SNPEPQTEPPPSQRGPSGSPQ--HPPSTTSQDQSTT 261

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 331284236  203 TTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTAT 249
Cdd:pfam05539 262 GDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTAT 308
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 149-277 2.27e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.10  E-value: 2.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 149 TEAQTTRLTATEAQTTplAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAME--AQTTAPAAMEAQTTPPAAMEAQTTQT 226
Cdd:PHA03269  19 IANLNTNIPIPELHTS--AATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPdlAQAPTPAASEKFDPAPAPHQAASRAP 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 331284236 227 TAMEAQTTA----PEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPT 277
Cdd:PHA03269  97 DPAVAPQLAaapkPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 115-280 2.73e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.96  E-value: 2.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 115 DSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATE-AQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGlEAQT 193
Cdd:PRK13108 293 DEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDvAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETS-EADI 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 194 TAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALS 273
Cdd:PRK13108 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQD 451


                 ....*..
gi 331284236 274 MEPTTKR 280
Cdd:PRK13108 452 DFSSRRR 458
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 126-218 2.78e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 2.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 126 PAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQT-T 204
Cdd:PRK07764 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPApA 491

                         90
                 ....*....|....
gi 331284236 205 APAAMEAQTTPPAA 218
Cdd:PRK07764 492 AAPAAPAAPAAPAG 505
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
128-241 3.60e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 3.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 128 ATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAA-TEAQTTQPTGLEAQTTAPAAMEAQTTAP 206
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPAPAP 454

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284236 207 AAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEA 241
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 122-271 3.79e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 3.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 122 QTTQPAATEA--QTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAM 199
Cdd:PRK07764 611 EAARPAAPAApaAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP 690

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 331284236 200 EAQTTAPAAMEAQTTPPAAMEAQ-----TTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEA 271
Cdd:PRK07764 691 AAPAGAAPAQPAPAPAATPPAGQaddpaAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767
PRK13914 PRK13914
invasion associated endopeptidase;
104-251 4.35e-03

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 39.01  E-value: 4.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 104 TELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVP-TEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQT--------- 173
Cdd:PRK13914 131 TGFVNGKYLTDKVTSTPVAPTQEVKKETTTQQAAPaAETKTEVKQTTQATTPAPKVAETKETPVVDQNATThavksgdti 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 174 -----------------TPPAATEAQTTQPTGLE--AQTTAPAAmEAQTTAPAAmEAQTTPPAAMEAQTTQTTAMEAQTT 234
Cdd:PRK13914 211 walsvkygvsvqdimswNNLSSSSIYVGQKLAIKqtANTATPKA-EVKTEAPAA-EKQAAPVVKENTNTNTATTEKKETT 288

                        170
                 ....*....|....*..
gi 331284236 235 apeaTEAQTTQPTATEA 251
Cdd:PRK13914 289 ----TQQQTAPKAPTEA 301
motB PRK05996
MotB family protein;
136-250 4.81e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 38.91  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 136 PVPTEAQTTPLAATEAQTTrltATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTP 215
Cdd:PRK05996 191 EVTTAGDLLPPGQAREQAQ---GAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMP 267

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 331284236 216 PAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATE 250
Cdd:PRK05996 268 DDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVE 302
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
155-265 5.25e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 39.07  E-value: 5.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 155 RLTATEAQTTPLAATEAQTTPPAATEAQTTQP-TGLEAQTTAPAAMEAQTTAPAAmeaqTTPPAAmeaqttqTTAMEAqT 233
Cdd:PRK11907   5 YFSKSAVALTLALLTASNPKLAQAEEIVTTTPaTSTEAEQTTPVESDATEEADNT----ETPVAA-------TTAAEA-P 72

                         90       100       110
                 ....*....|....*....|....*....|..
gi 331284236 234 TAPEATEAQTTQPTATEAQTTPLAAMEALSTE 265
Cdd:PRK11907  73 SSSETAETSDPTSEATDTTTSEARTVTPAATE 104
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 122-235 5.27e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 5.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 122 QTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEA 201
Cdd:PRK07764 398 APSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

                         90       100       110
                 ....*....|....*....|....*....|....
gi 331284236 202 QTTAPAAMEAQttPPAAMEAQTTQTTAMEAQTTA 235
Cdd:PRK07764 478 AAPAPAPPAAP--APAAAPAAPAAPAAPAGADDA 509
PHA03378 PHA03378
EBNA-3B; Provisional
 125-258 6.23e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.89  E-value: 6.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 125 QPAATEAQTTQPV---PTEAQTTPLAATEAQTTRLTATEAQttPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEA 201
Cdd:PHA03378 675 QPSPTGANTMLPIqwaPGTMQPPPRAPTPMRPPAAPPGRAQ--RPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284236 202 QTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTA---PEATEAQTTQPTA--TEAQTTPLAA 258
Cdd:PHA03378 753 RARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPqqrPRGAPTPQPPPQAgpTSMQLMPRAA 814
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 126-271 7.58e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 7.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 126 PAA--TEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQT 203
Cdd:PRK07764 365 PSAsdDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 331284236 204 TAPAAMEAQTTPPAAMEAQTTQTTameAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEA 271
Cdd:PRK07764 445 AGNAPAGGAPSPPPAAAPSAQPAP---APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 125-276 8.48e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 8.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 125 QPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAqTT 204
Cdd:PRK07764 607 GPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP-AP 685

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 331284236 205 APAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMeaLSTEPSATEALSMEP 276
Cdd:PRK07764 686 APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP--LPPEPDDPPDPAGAP 755
NDFIP2 cd22306
NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, ...
 180-270 9.62e-03

NEDD4 family-interacting protein 2; The NEDD4 (neural precursor cell expressed, developmentally down-regulated protein 4)-family interacting proteins (NDFIPs) are adaptor proteins that recruit NEDD4 E3 ligases to specific substrate proteins, which leads to the ubiquitylation and subsequent degradation of these proteins. They also act as activators of the E3 ligase activity by releasing NEDD4 ligase from its auto-inhibitory conformation. NDFIP2 may play a role in protein trafficking.


Pssm-ID: 412070 [Multi-domain]  Cd Length: 229  Bit Score: 37.56  E-value: 9.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 180 EAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTT---APEATEAQTTQPTATEAQTTPL 256
Cdd:cd22306   10 EDDPSESSASEQPSTSTQVQESSSNPAPETDAPPPPYSSITAGATAAPGTETQSEfypVPPPYSVATSLPTYDEAEKAKA 89

                         90
                 ....*....|....
gi 331284236 257 AAMEALSTEPSATE 270
Cdd:cd22306   90 AAMAAAAAEVAQRE 103
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
165-280 9.84e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.29  E-value: 9.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 331284236 165 PLAATEAQTTPPAATEAQTTQPTGleAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTT 244
Cdd:PRK07003 377 AGAVPAPGARAAAAVGASAVPAVT--AVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKAN 454

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 331284236 245 QPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKR 280
Cdd:PRK07003 455 ARASADSRCDERDAQPPADSGSASAPASDAPPDAAF 490
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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