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Conserved domains on  [gi|28610147|ref|NP_002175|]
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interleukin-6 receptor subunit beta isoform 1 precursor [Homo sapiens]

Protein Classification

Lep_receptor_Ig and FN3 domain-containing protein( domain architecture ID 11162515)

protein containing domains Lep_receptor_Ig, and FN3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lep_receptor_Ig pfam06328
Ig-like C2-type domain; This domain is a ligand-binding immunoglobulin-like domain. The two ...
 26-112 1.96e-37

Ig-like C2-type domain; This domain is a ligand-binding immunoglobulin-like domain. The two cysteine residues form a disulphide bridge.


:

Pssm-ID: 461878  Cd Length: 87  Bit Score: 135.06  E-value: 1.96e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    26 DPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNI 105
Cdd:pfam06328   1 EPCGHISPSPPVVRLGSNVTASCILKENCCSHLGVEAQIIVWKLGLELIPGSQYTVLNDTVSSVTLPNLNSTRALLTCCL 80


                  ....*..
gi 28610147   106 LTFGQLE 112
Cdd:pfam06328  81 LWGGQLQ 87
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 222-321 1.01e-17

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 79.08  E-value: 1.01e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 222 PNPPHNLSVINSEElSSILkLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTrsSFTVQDLKPFTEYVFRIRC 301
Cdd:cd00063   1 PSPPTNLRVTDVTS-TSVT-LSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSET--SYTLTGLKPGTEYEFRVRA 76

                        90       100
                ....*....|....*....|
gi 28610147 302 MKEDGkgyWSDWSEEASGIT 321
Cdd:cd00063  77 VNGGG---ESPPSESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 519-599 1.20e-11

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


:

Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 61.48  E-value: 1.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    519 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDE 598
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                   .
gi 28610147    599 G 599
Cdd:smart00060  81 G 81
FN3 super family cl21522
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 121-215 2.78e-05

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


The actual alignment was detected with superfamily member pfam09067:

Pssm-ID: 473895  Cd Length: 104  Bit Score: 43.95  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   121 ISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCkAKRDTPTS-------CTVDYSTVY-FV 192
Cdd:pfam09067   3 AALLLPEKPEDIKCFSREKEDFTCFWEEEEDGGLPTTYSFSYAYENETVKEC-PLYSTSGAnstrlfiCFFPKNDVSlFV 81

                          90       100
                  ....*....|....*....|...
gi 28610147   193 NIEVWVEAENALGKVTSDHINFD 215
Cdd:pfam09067  82 PLHITVVATNTNGTRYSRELSVE 104
 
Name Accession Description Interval E-value
Lep_receptor_Ig pfam06328
Ig-like C2-type domain; This domain is a ligand-binding immunoglobulin-like domain. The two ...
 26-112 1.96e-37

Ig-like C2-type domain; This domain is a ligand-binding immunoglobulin-like domain. The two cysteine residues form a disulphide bridge.


Pssm-ID: 461878  Cd Length: 87  Bit Score: 135.06  E-value: 1.96e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    26 DPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNI 105
Cdd:pfam06328   1 EPCGHISPSPPVVRLGSNVTASCILKENCCSHLGVEAQIIVWKLGLELIPGSQYTVLNDTVSSVTLPNLNSTRALLTCCL 80


                  ....*..
gi 28610147   106 LTFGQLE 112
Cdd:pfam06328  81 LWGGQLQ 87
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 222-321 1.01e-17

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 79.08  E-value: 1.01e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 222 PNPPHNLSVINSEElSSILkLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTrsSFTVQDLKPFTEYVFRIRC 301
Cdd:cd00063   1 PSPPTNLRVTDVTS-TSVT-LSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSET--SYTLTGLKPGTEYEFRVRA 76

                        90       100
                ....*....|....*....|
gi 28610147 302 MKEDGkgyWSDWSEEASGIT 321
Cdd:cd00063  77 VNGGG---ESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
224-311 3.12e-12

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 63.20  E-value: 3.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   224 PPHNLSVINSEElSSILkLTWTNPSIKSVIILKYNIQYRTKDASTWSQipPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 303
Cdd:pfam00041   2 APSNLTVTDVTS-TSLT-VSWTPPPDGNGPITGYEVEYRPKNSGEPWN--EITVPGTTTSVTLTGLKPGTEYEVRVQAVN 77


                  ....*...
gi 28610147   304 EDGKGYWS 311
Cdd:pfam00041  78 GGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 519-599 1.20e-11

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 61.48  E-value: 1.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    519 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDE 598
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                   .
gi 28610147    599 G 599
Cdd:smart00060  81 G 81
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 222-308 2.52e-10

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 57.62  E-value: 2.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    222 PNPPHNLSVINSEelSSILKLTWTNPSIKSVIilKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 301
Cdd:smart00060   1 PSPPSNLRVTDVT--STSVTLSWEPPPDDGIT--GYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRA 76


                   ....*..
gi 28610147    302 MKEDGKG 308
Cdd:smart00060  77 VNGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 519-610 9.68e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 56.35  E-value: 9.68e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 519 PSKGPTVRTKKVGKNEAVLEWDqlPVDVQNGFIRNYTIFYRTIIGNE--TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYT 596
Cdd:cd00063   1 PSPPTNLRVTDVTSTSVTLSWT--PPEDDGGPITGYVVEYREKGSGDwkEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78

                        90
                ....*....|....*
gi 28610147 597 DEG-GKDGPEFTFTT 610
Cdd:cd00063  79 GGGeSPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
221-412 9.09e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 59.25  E-value: 9.09e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 221 KPNPPHNLSVINSeeLSSILKLTWTNPSIKSVIilKYNIQYRTKDASTWSQIppeDTASTRSSFTVQDLKPFTEYVFRIR 300
Cdd:COG3401 326 PPAAPSGLTATAV--GSSSITLSWTASSDADVT--GYNVYRSTSGGGTYTKI---AETVTTTSYTDTGLTPGTTYYYKVT 398

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 301 CMkeDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWkTLPPFEANGKILDYEVTLTRWKSHLQNY 380
Cdd:COG3401 399 AV--DAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASA-ASNPGVSAAVLADGGDTGNAVPFTTTSS 475

                       170       180       190
                ....*....|....*....|....*....|..
gi 28610147 381 TVNATKLTVNLTNDRYLATLTVRNLVGKSDAA 412
Cdd:COG3401 476 TVTATTTDTTTANLSVTTGSLVGGSGASSVTN 507
fn3 pfam00041
Fibronectin type III domain;
530-599 3.50e-07

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 48.57  E-value: 3.50e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28610147   530 VGKNEAVLEWDqlPVDVQNGFIRNYTIFYRTIIGNETA--VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 599
Cdd:pfam00041  11 VTSTSLTVSWT--PPPDGNGPITGYEVEYRPKNSGEPWneITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80
EpoR_lig-bind pfam09067
Erythropoietin receptor, ligand binding; Members of this family interact with erythropoietin ...
 121-215 2.78e-05

Erythropoietin receptor, ligand binding; Members of this family interact with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signaling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions.


Pssm-ID: 401127  Cd Length: 104  Bit Score: 43.95  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   121 ISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCkAKRDTPTS-------CTVDYSTVY-FV 192
Cdd:pfam09067   3 AALLLPEKPEDIKCFSREKEDFTCFWEEEEDGGLPTTYSFSYAYENETVKEC-PLYSTSGAnstrlfiCFFPKNDVSlFV 81

                          90       100
                  ....*....|....*....|...
gi 28610147   193 NIEVWVEAENALGKVTSDHINFD 215
Cdd:pfam09067  82 PLHITVVATNTNGTRYSRELSVE 104
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
484-599 4.07e-03

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 40.76  E-value: 4.07e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 484 GNLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDqlpvDVQNGFIRNYTIfYRTII 562
Cdd:COG3401 197 GDIEPGTTYYYRVAATDTGGESAPsNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWD----PVTESDATGYRV-YRSNS 271

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 28610147 563 GNETAVNV-DSSHTEYTLSSLTSDTLYMVRMAAYTDEG 599
Cdd:COG3401 272 GDGPFTKVaTVTTTSYTDTGLTNGTTYYYRVTAVDAAG 309
 
Name Accession Description Interval E-value
Lep_receptor_Ig pfam06328
Ig-like C2-type domain; This domain is a ligand-binding immunoglobulin-like domain. The two ...
 26-112 1.96e-37

Ig-like C2-type domain; This domain is a ligand-binding immunoglobulin-like domain. The two cysteine residues form a disulphide bridge.


Pssm-ID: 461878  Cd Length: 87  Bit Score: 135.06  E-value: 1.96e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    26 DPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNI 105
Cdd:pfam06328   1 EPCGHISPSPPVVRLGSNVTASCILKENCCSHLGVEAQIIVWKLGLELIPGSQYTVLNDTVSSVTLPNLNSTRALLTCCL 80


                  ....*..
gi 28610147   106 LTFGQLE 112
Cdd:pfam06328  81 LWGGQLQ 87
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 222-321 1.01e-17

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 79.08  E-value: 1.01e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 222 PNPPHNLSVINSEElSSILkLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTrsSFTVQDLKPFTEYVFRIRC 301
Cdd:cd00063   1 PSPPTNLRVTDVTS-TSVT-LSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSET--SYTLTGLKPGTEYEFRVRA 76

                        90       100
                ....*....|....*....|
gi 28610147 302 MKEDGkgyWSDWSEEASGIT 321
Cdd:cd00063  77 VNGGG---ESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
224-311 3.12e-12

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 63.20  E-value: 3.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   224 PPHNLSVINSEElSSILkLTWTNPSIKSVIILKYNIQYRTKDASTWSQipPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 303
Cdd:pfam00041   2 APSNLTVTDVTS-TSLT-VSWTPPPDGNGPITGYEVEYRPKNSGEPWN--EITVPGTTTSVTLTGLKPGTEYEVRVQAVN 77


                  ....*...
gi 28610147   304 EDGKGYWS 311
Cdd:pfam00041  78 GGGEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 519-599 1.20e-11

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 61.48  E-value: 1.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    519 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDE 598
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80


                   .
gi 28610147    599 G 599
Cdd:smart00060  81 G 81
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 222-308 2.52e-10

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 57.62  E-value: 2.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147    222 PNPPHNLSVINSEelSSILKLTWTNPSIKSVIilKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRC 301
Cdd:smart00060   1 PSPPSNLRVTDVT--STSVTLSWEPPPDDGIT--GYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRA 76


                   ....*..
gi 28610147    302 MKEDGKG 308
Cdd:smart00060  77 VNGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 519-610 9.68e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 56.35  E-value: 9.68e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 519 PSKGPTVRTKKVGKNEAVLEWDqlPVDVQNGFIRNYTIFYRTIIGNE--TAVNVDSSHTEYTLSSLTSDTLYMVRMAAYT 596
Cdd:cd00063   1 PSPPTNLRVTDVTSTSVTLSWT--PPEDDGGPITGYVVEYREKGSGDwkEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78

                        90
                ....*....|....*
gi 28610147 597 DEG-GKDGPEFTFTT 610
Cdd:cd00063  79 GGGeSPPSESVTVTT 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
221-412 9.09e-09

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 59.25  E-value: 9.09e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 221 KPNPPHNLSVINSeeLSSILKLTWTNPSIKSVIilKYNIQYRTKDASTWSQIppeDTASTRSSFTVQDLKPFTEYVFRIR 300
Cdd:COG3401 326 PPAAPSGLTATAV--GSSSITLSWTASSDADVT--GYNVYRSTSGGGTYTKI---AETVTTTSYTDTGLTPGTTYYYKVT 398

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 301 CMkeDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWkTLPPFEANGKILDYEVTLTRWKSHLQNY 380
Cdd:COG3401 399 AV--DAAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASA-ASNPGVSAAVLADGGDTGNAVPFTTTSS 475

                       170       180       190
                ....*....|....*....|....*....|..
gi 28610147 381 TVNATKLTVNLTNDRYLATLTVRNLVGKSDAA 412
Cdd:COG3401 476 TVTATTTDTTTANLSVTTGSLVGGSGASSVTN 507
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
222-331 3.29e-08

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 57.32  E-value: 3.29e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 222 PNPPHNLSVINseELSSILKLTWTNPSIKSVIilKYNIQYRTKDASTWSQIppedTASTRSSFTVQDLKPFTEYVFRIRC 301
Cdd:COG3401 233 PSAPTGLTATA--DTPGSVTLSWDPVTESDAT--GYRVYRSNSGDGPFTKV----ATVTTTSYTDTGLTNGTTYYYRVTA 304

                        90       100       110
                ....*....|....*....|....*....|
gi 28610147 302 MKEDGKGywSDWSEEASGITYEDRPSkAPS 331
Cdd:COG3401 305 VDAAGNE--SAPSNVVSVTTDLTPPA-APS 331
fn3 pfam00041
Fibronectin type III domain;
530-599 3.50e-07

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 48.57  E-value: 3.50e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28610147   530 VGKNEAVLEWDqlPVDVQNGFIRNYTIFYRTIIGNETA--VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 599
Cdd:pfam00041  11 VTSTSLTVSWT--PPPDGNGPITGYEVEYRPKNSGEPWneITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80
EpoR_lig-bind pfam09067
Erythropoietin receptor, ligand binding; Members of this family interact with erythropoietin ...
 121-215 2.78e-05

Erythropoietin receptor, ligand binding; Members of this family interact with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signaling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions.


Pssm-ID: 401127  Cd Length: 104  Bit Score: 43.95  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   121 ISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCkAKRDTPTS-------CTVDYSTVY-FV 192
Cdd:pfam09067   3 AALLLPEKPEDIKCFSREKEDFTCFWEEEEDGGLPTTYSFSYAYENETVKEC-PLYSTSGAnstrlfiCFFPKNDVSlFV 81

                          90       100
                  ....*....|....*....|...
gi 28610147   193 NIEVWVEAENALGKVTSDHINFD 215
Cdd:pfam09067  82 PLHITVVATNTNGTRYSRELSVE 104
IL6Ra-bind pfam09240
Interleukin-6 receptor alpha chain, binding; Members of this family adopt a structure ...
 131-216 1.23e-04

Interleukin-6 receptor alpha chain, binding; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6.


Pssm-ID: 401252  Cd Length: 96  Bit Score: 42.01  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   131 NLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWAT-HKFADCKA-KRDTPTSC-------TVDYSTVYFVNIEVWVeaE 201
Cdd:pfam09240   1 DLTCFIHNPSNLSCEWKPGPNAPPDTNYVLYVRKSPlGPVLQCQYyIRDDGTRIgcqfddlEGLSSSFHQVYICVNG--S 78

                          90
                  ....*....|....*
gi 28610147   202 NALGKVTSDHINFDP 216
Cdd:pfam09240  79 SSAGPIRSSDQTFQL 93
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
484-599 4.07e-03

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 40.76  E-value: 4.07e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147 484 GNLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDqlpvDVQNGFIRNYTIfYRTII 562
Cdd:COG3401 197 GDIEPGTTYYYRVAATDTGGESAPsNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWD----PVTESDATGYRV-YRSNS 271

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 28610147 563 GNETAVNV-DSSHTEYTLSSLTSDTLYMVRMAAYTDEG 599
Cdd:COG3401 272 GDGPFTKVaTVTTTSYTDTGLTNGTTYYYRVTAVDAAG 309
Pur_ac_phosph_N pfam16656
Purple acid Phosphatase, N-terminal domain; This domain is found at the N-terminus of Purple ...
 242-313 6.09e-03

Purple acid Phosphatase, N-terminal domain; This domain is found at the N-terminus of Purple acid phosphatase proteins.


Pssm-ID: 465220 [Multi-domain]  Cd Length: 93  Bit Score: 37.00  E-value: 6.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28610147   242 LTW-TNPSIKSVIIlkyniQYRTKDASTWSQIPPEDTASTRS--------SFTVQDLKPFTEYVFRIRcmkeDGKGYWSD 312
Cdd:pfam16656  17 VSWvTPSAVTSPVV-----QYGTSSSALTSTATATSSTYTTGdggtgyihRATLTGLEPGTTYYYRVG----DDNGGWSE 87


                  .
gi 28610147   313 W 313
Cdd:pfam16656  88 V 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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