|
Name |
Accession |
Description |
Interval |
E-value |
| KISc_CENP_E |
cd01374 |
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ... |
6-329 |
4.01e-171 |
|
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276825 [Multi-domain] Cd Length: 321 Bit Score: 528.83 E-value: 4.01e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREESLGEtaQVYWKTDNNVIYQVD-GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFA 84
Cdd:cd01374 1 KITVTVRVRPLNSREIGINE--QVAWEIDNDTIYLVEpPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYNGTIFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 85 YGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTqkMKPLIIREDVNRNVYV 164
Cdd:cd01374 79 YGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPT--SQNLKIRDDVEKGVYV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 165 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPsnCEGSVKVSHLNLVDLAGSERAAQ 244
Cdd:cd01374 157 AGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSERAAQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 245 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTALQF 322
Cdd:cd01374 235 TGAAGVRRKEGSHINKSLLTLGTVISKLSEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAEshVEETLNTLKF 314
|
....*..
gi 71061468 323 ASTAKYM 329
Cdd:cd01374 315 ASRAKKI 321
|
|
| KISc |
smart00129 |
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ... |
6-336 |
4.49e-143 |
|
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Pssm-ID: 214526 [Multi-domain] Cd Length: 335 Bit Score: 449.33 E-value: 4.49e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREESLGETAQVYW------KTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 79
Cdd:smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFpdkvgkTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 80 GTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKmkPLIIREDV 158
Cdd:smart00129 81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSK--KLEIREDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 159 NRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSnceGSVKVSHLNLVDLAG 238
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS---GSGKASKLNLVDLAG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 239 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDET 316
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPssSNLEET 315
|
330 340
....*....|....*....|
gi 71061468 317 LTALQFASTAKYMKNTPYVN 336
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
|
|
| Kinesin |
pfam00225 |
Kinesin motor domain; |
12-327 |
8.39e-139 |
|
Kinesin motor domain;
Pssm-ID: 459720 [Multi-domain] Cd Length: 326 Bit Score: 436.62 E-value: 8.39e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 12 RVRPLNSREESLGETAQVY------WKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:pfam00225 1 RVRPLNEREKERGSSVIVSvesvdsETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 86 GQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLCGTQKMK-PLIIREDVNRNVY 163
Cdd:pfam00225 81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSPSNKNKrKLRIREDPKKGVY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 164 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSncEGSVKVSHLNLVDLAGSERAA 243
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGG--EESVKTGKLNLVDLAGSERAS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 244 QTGAA-GVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS--FDETLTAL 320
Cdd:pfam00225 239 KTGAAgGQRLKEAANINKSLSALGNVISALADKK-SKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSsnYEETLSTL 317
|
....*..
gi 71061468 321 QFASTAK 327
Cdd:pfam00225 318 RFASRAK 324
|
|
| KISc |
cd00106 |
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ... |
6-327 |
1.18e-136 |
|
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276812 [Multi-domain] Cd Length: 326 Bit Score: 430.52 E-value: 1.18e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREeslGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 78
Cdd:cd00106 1 NVRVAVRVRPLNGRE---ARSAKSVISVDGGKSVVLDppknrvaPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSALEGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 79 NGTIFAYGQTASGKTYTMMGS-EDHLGVIPRAIHDIFQKIKKFP--DREFLLRVSYMEIYNETITDLLCGTQKmKPLIIR 155
Cdd:cd00106 78 NGTIFAYGQTGSGKTYTMLGPdPEQRGIIPRALEDIFERIDKRKetKSSFSVSASYLEIYNEKIYDLLSPVPK-KPLSLR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 156 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgepSNCEGSVKVSHLNLVD 235
Cdd:cd00106 157 EDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNR---EKSGESVTSSKLNLVD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 236 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSF 313
Cdd:cd00106 234 LAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQ-NKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPssENF 312
|
330
....*....|....
gi 71061468 314 DETLTALQFASTAK 327
Cdd:cd00106 313 EETLSTLRFASRAK 326
|
|
| KISc_KIF4 |
cd01372 |
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ... |
6-330 |
3.04e-106 |
|
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276823 [Multi-domain] Cd Length: 341 Bit Score: 343.93 E-value: 3.04e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREESLGETAQVYWkTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01372 2 SVRVAVRVRPLLPKEIIEGCRICVSF-VPGEPQVTVGTDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGYNATVLAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 86 GQTASGKTYTMMGS------EDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLC-GTQKMKPLIIRED 157
Cdd:cd01372 81 GQTGSGKTYTMGTAytaeedEEQVGIIPRAIQHIFKKIEKKKDTfEFQLKVSFLEIYNEEIRDLLDpETDKKPTISIRED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 158 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNC-----EGSVKVSHLN 232
Cdd:cd01372 161 SKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKNGPIAPmsaddKNSTFTSKFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 233 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-VGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV 311
Cdd:cd01372 241 FVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESkKGAHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPA 320
|
330 340
....*....|....*....|.
gi 71061468 312 S--FDETLTALQFASTAKYMK 330
Cdd:cd01372 321 DsnFEETLNTLKYANRARNIK 341
|
|
| KISc_KIF3 |
cd01371 |
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ... |
6-327 |
4.31e-100 |
|
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276822 [Multi-domain] Cd Length: 334 Bit Score: 325.95 E-value: 4.31e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIyQVDGS--------KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQG 77
Cdd:cd01371 2 NVKVVVRCRPLNGKEKAAGALQIVDVDEKRGQV-SVRNPkataneppKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 78 YNGTIFAYGQTASGKTYTMMG--SEDHL-GVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLcGTQKMKPLI 153
Cdd:cd01371 81 YNGTIFAYGQTGTGKTYTMEGkrEDPELrGIIPNSFAHIFGHIARSQNnQQFLVRVSYLEIYNEEIRDLL-GKDQTKRLE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 154 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSncEGSVKVSHLNL 233
Cdd:cd01371 160 LKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGEDG--ENHIRVGKLNL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 234 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVS- 312
Cdd:cd01371 238 VDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADy 316
|
330
....*....|....*.
gi 71061468 313 -FDETLTALQFASTAK 327
Cdd:cd01371 317 nYDETLSTLRYANRAK 332
|
|
| KISc_KIF1A_KIF1B |
cd01365 |
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ... |
7-336 |
1.52e-97 |
|
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Pssm-ID: 276816 [Multi-domain] Cd Length: 361 Bit Score: 319.68 E-value: 1.52e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 7 VAVCVRVRPLNSREESLGE-----------TAQVYWKTDNNVIYQVDGSKSFNFDRVF--HGNE-----TTKNVYEEIAA 68
Cdd:cd01365 3 VKVAVRVRPFNSREKERNSkcivqmsgketTLKNPKQADKNNKATREVPKSFSFDYSYwsHDSEdpnyaSQEQVYEDLGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 69 PIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDRE--FLLRVSYMEIYNETITDLLCGT 146
Cdd:cd01365 83 ELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIADTTNQNmsYSVEVSYMEIYNEKVRDLLNPK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 147 QKMKP--LIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFrMILESREKGEPSNCEG 224
Cdd:cd01365 163 PKKNKgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVF-TIVLTQKRHDAETNLT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 225 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG------FINYRDSKLTRILQNSLGG 298
Cdd:cd01365 242 TEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssFIPYRDSVLTWLLKENLGG 321
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 71061468 299 NAKTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVN 336
Cdd:cd01365 322 NSKTAMIAAISPADinYEETLSTLRYADRAKKIVNRAVVN 361
|
|
| KISc_KHC_KIF5 |
cd01369 |
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ... |
7-327 |
3.26e-97 |
|
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276820 [Multi-domain] Cd Length: 325 Bit Score: 317.35 E-value: 3.26e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNV-IYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01369 4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVvIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNGYNGTIFAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 86 GQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKFPDR-EFLLRVSYMEIYNETITDLLcGTQKmKPLIIREDVNRN 161
Cdd:cd01369 84 GQTSSGKTYTMEGKlgdPESMGIIPRIVQDIFETIYSMDENlEFHVKVSYFEIYMEKIRDLL-DVSK-TNLSVHEDKNRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 162 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESRekgepSNCEGSVKVSHLNLVDLAGSER 241
Cdd:cd01369 162 PYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE-----NVETEKKKSGKLYLVDLAGSEK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 242 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTA 319
Cdd:cd01369 237 VSKTGAEGAVLDEAKKINKSLSALGNVINALTDGK-KTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNesETLST 315
|
....*...
gi 71061468 320 LQFASTAK 327
Cdd:cd01369 316 LRFGQRAK 323
|
|
| KISc_C_terminal |
cd01366 |
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ... |
12-324 |
3.52e-96 |
|
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276817 [Multi-domain] Cd Length: 329 Bit Score: 314.53 E-value: 3.52e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 12 RVRPLNSREESLGETAQVYWKTDNNVI---YQVDGSKSFNFDRVFHGNETTKNVYEEIAaPIIDSAIQGYNGTIFAYGQT 88
Cdd:cd01366 9 RVRPLLPSEENEDTSHITFPDEDGQTIeltSIGAKQKEFSFDKVFDPEASQEDVFEEVS-PLVQSALDGYNVCIFAYGQT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 89 ASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDR--EFLLRVSYMEIYNETITDLLC-GTQKMKPLIIRED-VNRNVYV 164
Cdd:cd01366 88 GSGKTYTMEGPPESPGIIPRALQELFNTIKELKEKgwSYTIKASMLEIYNETIRDLLApGNAPQKKLEIRHDsEKGDTTV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 165 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSvkvshLNLVDLAGSERAAQ 244
Cdd:cd01366 168 TNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGK-----LNLVDLAGSERLNK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 245 TGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQF 322
Cdd:cd01366 243 SGATGDRLKETQAINKSLSALGDVISALRQKQ--SHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAesNLNETLNSLRF 320
|
..
gi 71061468 323 AS 324
Cdd:cd01366 321 AS 322
|
|
| KISc_KIP3_like |
cd01370 |
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ... |
9-327 |
1.31e-92 |
|
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276821 [Multi-domain] Cd Length: 345 Bit Score: 305.04 E-value: 1.31e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 9 VCVRVRPLNSREESLG---------------------ETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIA 67
Cdd:cd01370 4 VAVRVRPFSEKEKNEGfrrivkvmdnhmlvfdpkdeeDGFFHGGSNNRDRRKRRNKELKYVFDRVFDETSTQEEVYEETT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 68 APIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLcgT 146
Cdd:cd01370 84 KPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESLKDeKEFEVSMSYLEIYNETIRDLL--N 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 147 QKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEgsV 226
Cdd:cd01370 162 PSSGPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKTASINQQ--V 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 227 KVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01370 240 RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADpGKKNKHIPYRDSKLTRLLKDSLGGNCRTVMI 319
|
330 340
....*....|....*....|....
gi 71061468 306 CTITP--VSFDETLTALQFASTAK 327
Cdd:cd01370 320 ANISPssSSYEETHNTLKYANRAK 343
|
|
| KISc_KLP2_like |
cd01373 |
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ... |
6-339 |
2.92e-92 |
|
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276824 [Multi-domain] Cd Length: 347 Bit Score: 304.05 E-value: 2.92e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAY 85
Cdd:cd01373 2 AVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKPIVESCLSGYNGTIFAY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 86 GQTASGKTYTMMG-SEDHL-------GVIPRAIHDIFQKIKKFPDR-----EFLLRVSYMEIYNETITDLLCGTQkmKPL 152
Cdd:cd01373 82 GQTGSGKTYTMWGpSESDNesphglrGVIPRIFEYLFSLIQREKEKagegkSFLCKCSFLEIYNEQIYDLLDPAS--RNL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 153 IIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGepsNCEGSVKVSHLN 232
Cdd:cd01373 160 KLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKK---ACFVNIRTSRLN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 233 LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGF--INYRDSKLTRILQNSLGGNAKTRIICTITP 310
Cdd:cd01373 237 LVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQrhVCYRDSKLTFLLRDSLGGNAKTAIIANVHP 316
|
330 340 350
....*....|....*....|....*....|.
gi 71061468 311 VS--FDETLTALQFASTAKYMKNTPYVNEVS 339
Cdd:cd01373 317 SSkcFGETLSTLRFAQRAKLIKNKAVVNEDT 347
|
|
| KISc_BimC_Eg5 |
cd01364 |
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ... |
7-337 |
5.69e-85 |
|
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276815 [Multi-domain] Cd Length: 353 Bit Score: 283.45 E-value: 5.69e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI---YQVDGS----KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 79
Cdd:cd01364 4 IQVVVRCRPFNLRERKASSHSVVEVDPVRKEVsvrTGGLADksstKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLMGYN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 80 GTIFAYGQTASGKTYTMMGSE-----------DHLGVIPRAIHDIFQKIKKfPDREFLLRVSYMEIYNETITDLL-CGTQ 147
Cdd:cd01364 84 CTIFAYGQTGTGKTYTMEGDRspneeytweldPLAGIIPRTLHQLFEKLED-NGTEYSVKVSYLEIYNEELFDLLsPSSD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 148 KMKPLIIREDVNR--NVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGepSNCEGS 225
Cdd:cd01364 163 VSERLRMFDDPRNkrGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHIKETT--IDGEEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 226 VKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGqvGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01364 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER--APHVPYRESKLTRLLQDSLGGRTKTSII 318
|
330 340 350
....*....|....*....|....*....|....
gi 71061468 306 CTITP--VSFDETLTALQFASTAKYMKNTPYVNE 337
Cdd:cd01364 319 ATISPasVNLEETLSTLEYAHRAKNIKNKPEVNQ 352
|
|
| KISc_KIF23_like |
cd01368 |
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ... |
7-327 |
2.93e-76 |
|
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276819 [Multi-domain] Cd Length: 345 Bit Score: 258.09 E-value: 2.93e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-DGSKS-------------FNFDRVFHGNETTKNVYEEIAAPIID 72
Cdd:cd01368 3 VKVYLRVRPLSKDELESEDEGCIEVINSTTVVLHPpKGSAAnksernggqketkFSFSKVFGPNTTQKEFFQGTALPLVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 73 SAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKkfpdrEFLLRVSYMEIYNETITDLL-----CGTQ 147
Cdd:cd01368 83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIG-----GYSVFVSYIEIYNEYIYDLLepspsSPTK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 148 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMIL---ESREKGEPSNCEG 224
Cdd:cd01368 158 KRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLvqaPGDSDGDVDQDKD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 225 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFIN---YRDSKLTRILQNSLGGNAK 301
Cdd:cd01368 238 QITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKmvpFRDSKLTHLFQNYFDGEGK 317
|
330 340
....*....|....*....|....*...
gi 71061468 302 TRIICTITPVS--FDETLTALQFASTAK 327
Cdd:cd01368 318 ASMIVNVNPCAsdYDETLHVMKFSAIAQ 345
|
|
| KISc_KIF9_like |
cd01375 |
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ... |
6-327 |
2.41e-75 |
|
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276826 [Multi-domain] Cd Length: 334 Bit Score: 254.81 E-value: 2.41e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 6 AVAVCVRVRPLNSREESL------GETAQVYWKTD--NNVIYQVDGSKSFNFDRVFHgNETTKNVYEEIAAPIIDSAIQG 77
Cdd:cd01375 1 KVQAFVRVRPTDDFAHEMikygedGKSISIHLKKDlrRGVVNNQQEDWSFKFDGVLH-NASQELVYETVAKDVVSSALAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 78 YNGTIFAYGQTASGKTYTMMGSED---HLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGT----QKMK 150
Cdd:cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTEnykHRGIIPRALQQVFRMIEERPTKAYTVHVSYLEIYNEQLYDLLSTLpyvgPSVT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 151 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgEPSncEGSVKVSH 230
Cdd:cd01375 160 PMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSR-TLS--SEKYITSK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 231 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDgQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT- 309
Cdd:cd01375 237 LNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-KDRTHVPFRQSKLTHVLRDSLGGNCNTVMVANIYg 315
|
330
....*....|....*....
gi 71061468 310 -PVSFDETLTALQFASTAK 327
Cdd:cd01375 316 eAAQLEETLSTLRFASRVK 334
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
34-339 |
1.27e-66 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 237.71 E-value: 1.27e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 34 DNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI 113
Cdd:COG5059 45 KSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKEL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 114 FQKIKKFPDR-EFLLRVSYMEIYNETITDLLcgTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYG 192
Cdd:COG5059 125 FSKLEDLSMTkDFAVSISYLEIYNEKIYDLL--SPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 193 ETKMNQRSSRSHTIFRMILESREKGEPSNCEGSvkvshLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKL 272
Cdd:COG5059 203 STEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL 277
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 273 SDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVNEVS 339
Cdd:COG5059 278 GDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPssNSFEETINTLKFASRAKSIKNKIQVNSSS 346
|
|
| KISc_KIF2_like |
cd01367 |
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ... |
9-327 |
2.17e-66 |
|
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276818 [Multi-domain] Cd Length: 328 Bit Score: 228.72 E-value: 2.17e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 9 VCVRVRPLNSREESLGETAQVYWKTDNNVI-----YQVDGSK-----SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 78
Cdd:cd01367 4 VCVRKRPLNKKEVAKKEIDVVSVPSKLTLIvhepkLKVDLTKyienhTFRFDYVFDESSSNETVYRSTVKPLVPHIFEGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 79 NGTIFAYGQTASGKTYTMMGS----EDHLGVIPRAIHDIFQKIKKFPDREFL-LRVSYMEIYNETITDLLcgtQKMKPLI 153
Cdd:cd01367 84 KATCFAYGQTGSGKTYTMGGDfsgqEESKGIYALAARDVFRLLNKLPYKDNLgVTVSFFEIYGGKVFDLL---NRKKRVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 154 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKgepsNCEGSVkvshLNL 233
Cdd:cd01367 161 LREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGT----NKLHGK----LSF 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 234 VDLAGSERAAQTGAAGV-RLKEGCNINRSLFILGQVIKKLSDGQVggFINYRDSKLTRILQNSL-GGNAKTRIICTITP- 310
Cdd:cd01367 233 VDLAGSERGADTSSADRqTRMEGAEINKSLLALKECIRALGQNKA--HIPFRGSKLTQVLKDSFiGENSKTCMIATISPg 310
|
330
....*....|....*...
gi 71061468 311 -VSFDETLTALQFASTAK 327
Cdd:cd01367 311 aSSCEHTLNTLRYADRVK 328
|
|
| KISc_KID_like |
cd01376 |
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ... |
7-327 |
4.48e-65 |
|
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276827 [Multi-domain] Cd Length: 319 Bit Score: 224.69 E-value: 4.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 7 VAVCVRVRPLNSREESLGETAQVYWkTDNNVIYQVDG-----SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 81
Cdd:cd01376 2 VRVAVRVRPFVDGTAGASDPSCVSG-IDSCSVELADPrnhgeTLKYQFDAFYGEESTQEDIYAREVQPIVPHLLEGQNAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 82 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLrVSYMEIYNETITDLLcgTQKMKPLIIREDVNRN 161
Cdd:cd01376 81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVMDLLQMTRKEAWALSFT-MSYLEIYQEKILDLL--EPASKELVIREDKDGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 162 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREkgepSNCEGSVKVSHLNLVDLAGSER 241
Cdd:cd01376 158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRE----RLAPFRQRTGKLNLIDLAGSED 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 242 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTA 319
Cdd:cd01376 234 NRRTGNEGIRLKESGAINSSLFVLSKVVNALNKNL--PRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPerTFYQDTLST 311
|
....*...
gi 71061468 320 LQFASTAK 327
Cdd:cd01376 312 LNFAARSR 319
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
7-362 |
3.28e-63 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 239.45 E-value: 3.28e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 7 VAVCVRVRPLNSREEslGETAQVYWKTDNNVIyqvdGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYG 86
Cdd:PLN03188 100 VKVIVRMKPLNKGEE--GEMIVQKMSNDSLTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 87 QTASGKTYTMMG-----SEDHL-----GVIPRAIHDIFQKIK----KFPDRE--FLLRVSYMEIYNETITDLLCGTQKmk 150
Cdd:PLN03188 174 QTGSGKTYTMWGpanglLEEHLsgdqqGLTPRVFERLFARINeeqiKHADRQlkYQCRCSFLEIYNEQITDLLDPSQK-- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 151 PLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEpSNCEGSVKVSH 230
Cdd:PLN03188 252 NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV-ADGLSSFKTSR 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 231 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-GQVGG--FINYRDSKLTRILQNSLGGNAKTRIICT 307
Cdd:PLN03188 331 INLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEiSQTGKqrHIPYRDSRLTFLLQESLGGNAKLAMVCA 410
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 308 ITPVSF--DETLTALQFASTAKYMKNTPYVNEVSTDEalLKRYRKEIMDLKKQLEEV 362
Cdd:PLN03188 411 ISPSQSckSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQRV 465
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
9-269 |
4.72e-24 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 101.27 E-value: 4.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 9 VCVRVRPLNSREESlgetaqvywktdnnviyqvDGSKSFNFDRVFHGNETTKNVYEeIAAPIIDSAIQGYNG-TIFAYGQ 87
Cdd:cd01363 1 VLVRVNPFKELPIY-------------------RDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGYNNqSIFAYGE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 88 TASGKTYTMMgsedhlGVIPRAIHDIFQKIKKfpdrefllrvsymeiynetitdllcgtqkmkpliiredvNRNVYVADL 167
Cdd:cd01363 61 SGAGKTETMK------GVIPYLASVAFNGINK---------------------------------------GETEGWVYL 95
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 168 TEEVVYTSEMALKWITKGEKSRHyGETKMNQRSSRSHTIFRMilesrekgepsncegsvkvshlnLVDLAGSERaaqtga 247
Cdd:cd01363 96 TEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEI-----------------------LLDIAGFEI------ 145
|
250 260
....*....|....*....|..
gi 71061468 248 agvrlkegcnINRSLFILGQVI 269
Cdd:cd01363 146 ----------INESLNTLMNVL 157
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
828-1715 |
5.54e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 111.30 E-value: 5.54e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 828 DFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQE---RLNEMEQ----LKEQLENRD 900
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAlanEISRLEQqkqiLRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 901 STLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETI 980
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 981 NTLKSKISEEVSRNLHMEENtgetKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLE 1060
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDR----RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1061 sviaEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLaEVEEKLKeksqqlqekq 1140
Cdd:TIGR02168 472 ----EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI-SVDEGYE---------- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1141 qqllnvqeemsemqkkiNEIENLKNElknkelTLEHMETERLELAQKLNENYEEvksitkerkvlKELQKSFETERDHLR 1220
Cdd:TIGR02168 537 -----------------AAIEAALGG------RLQAVVVENLNAAKKAIAFLKQ-----------NELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1221 GyiREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKShtklqeeipvLHEEQELLPNVKEVSE 1300
Cdd:TIGR02168 583 G--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNA----------LELAKKLRPGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1301 TQETMNELELLTEQSTTKDSTTLARiEMERLRLNEKFQESQEEIKSLTKERdnlktikEALEVKHDQLKEHIRETLAKIQ 1380
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILER-RREIEELEEKIEELEEKIAELEKAL-------AELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1381 ESQskQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQ 1460
Cdd:TIGR02168 723 ELS--RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1461 LKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNiKQI 1540
Cdd:TIGR02168 801 LREALDELRAELTLLNEE-------AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1541 SEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEivakm 1620
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE----- 947
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1621 kesqekEYQFLKMTAVNETQEKMCEIEHLKEQfetqklnLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLkv 1700
Cdd:TIGR02168 948 ------EYSLTLEEAEALENKIEDDEEEARRR-------LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDL-- 1012
|
890
....*....|....*
gi 71061468 1701 erDQLKENLRETITR 1715
Cdd:TIGR02168 1013 --TEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1332-2129 |
4.48e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.22 E-value: 4.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1332 RLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQeqslnmkekdNETTKIVSEMEQfkp 1411
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----------YALANEISRLEQ--- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1412 kdsallRIEIemlgLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEE 1491
Cdd:TIGR02168 303 ------QKQI----LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1492 TINELRVNLSEKETEISTIQKQLEAINdklqNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSAlqSIESKM 1571
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIASLN----NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1572 LELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKE--NTKEIVAKMKESQEKEYQFLKmTAVNETQEKMCEIEHL 1649
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1650 KEQFETQK---LNLENIETEniRLTQILHENLEEMR----SVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEE 1722
Cdd:TIGR02168 526 SELISVDEgyeAAIEAALGG--RLQAVVVENLNAAKkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1723 LKIVHMHLKEHQETIDKLRG--IVSEKTNEISNMQKDLEHSN--------------------DALKAQDLKIQEELRIAH 1780
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLLGgvLVVDDLDNALELAKKLRPGYrivtldgdlvrpggvitggsAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1781 MHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKdvnetqkkvsEMEQLKKQIKDQS 1860
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA----------EVEQLEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1861 LTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKAR-----------DLEIQQELKTA 1929
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneeaanlRERLESLERRI 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1930 RMLSKEHKETV---DKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQF 2006
Cdd:TIGR02168 834 AATERRLEDLEeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2007 EaqnlsmqsvrmdnfQLTKKLHESLEEIRIVakerdelrriKESLKMERDQFIATLREMIARDRQNHQVKPEKRLLS-DG 2085
Cdd:TIGR02168 914 R--------------RELEELREKLAQLELR----------LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDeEE 969
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 2086 QQHLTESLREKCSRI-----------KELLKRYSEMDDHYECLNRLSLDLEKEIE 2129
Cdd:TIGR02168 970 ARRRLKRLENKIKELgpvnlaaieeyEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1082-1825 |
7.76e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.90 E-value: 7.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1082 ENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE 1161
Cdd:TIGR02168 222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1162 N----LKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL 1237
Cdd:TIGR02168 302 QqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1238 KIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELlPNVKEVSETQETMNELELLTEQSTT 1317
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1318 KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKE---------HIRETLAKIQESQSKQEQ 1388
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglsGILGVLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1389 SLN----------MKEKDNETTKIVSEMEQ------------------FKPKDSALLRIEIEMLGLSKRLQESHDEMKSV 1440
Cdd:TIGR02168 538 AIEaalggrlqavVVENLNAAKKAIAFLKQnelgrvtflpldsikgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1441 AKEKDDLQRLQEVLQSESDQLKENIK---------EIVAKH--------------LETEEELKVAHCCLKEQEETINELR 1497
Cdd:TIGR02168 618 LSYLLGGVLVVDDLDNALELAKKLRPgyrivtldgDLVRPGgvitggsaktnssiLERRREIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1498 VNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEeqfniKQISEVQEKVNELKQFKEHRkakDSALQSIESKMLELTNR 1577
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALR-----KDLARLEAEVEQLEERIAQL---SKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1578 LQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEK--EYQFLKMTAVNETQEKMCEIEHLKEQFET 1655
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaaNLRERLESLERRIAATERRLEDLEEQIEE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1656 QKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQE 1735
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1736 TIDKLRGIVSEKTNEISNMQKDLEhsnDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGI----------VSEKTDKLS 1805
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLSEEYSLTL---EEAEALENKIEDDEEEARRRLKRLENKIKELGPVnlaaieeyeeLKERYDFLT 1006
|
810 820
....*....|....*....|
gi 71061468 1806 NMQKDLENSNAKLQEKIQEL 1825
Cdd:TIGR02168 1007 AQKEDLTEAKETLEEAIEEI 1026
|
|
| Microtub_bd |
pfam16796 |
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ... |
19-143 |
1.25e-19 |
|
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.
Pssm-ID: 465274 [Multi-domain] Cd Length: 144 Bit Score: 87.66 E-value: 1.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 19 REESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAApIIDSAIQGYNGTIFAYGQTASGKTYTMmg 98
Cdd:pfam16796 29 RPELLSEAQIDYPDETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM-- 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 71061468 99 sedhlgvIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLL 143
Cdd:pfam16796 106 -------IPRAREQIFRFISSLkKGWKYTIELQFVEIYNESSQDLL 144
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1063-1915 |
1.59e-19 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 96.68 E-value: 1.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1063 IAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRlaEVEEKLKEKsqqlQEKQQQ 1142
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEK----EALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1143 LLNVQEEMSEMQKkinEIENLKNELKNKELTLEHMETERLELAQKLNENYEEvksitkERKVLKELQKSFETERDHLRGY 1222
Cdd:TIGR02169 239 KEAIERQLASLEE---ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQLRVKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1223 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEK-------TAQIINTQD-LEKSHTKLQEEIPVLHE-EQELLP 1293
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEErkrrdklTEEYAELKEeLEDLRAELEEVDKEFAEtRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1294 NVKEVSETQETMNELEL----LTEQSTTKDStTLARIEMERLRLNEKFQESQEEIKSLTKE----RDNLKTIKEALEvKH 1365
Cdd:TIGR02169 390 YREKLEKLKREINELKReldrLQEELQRLSE-ELADLNAAIAGIEAKINELEEEKEDKALEikkqEWKLEQLAADLS-KY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1366 DQLKEHIRETLAKIQESQSKQEQSLNMKEKdneTTKIVSEMEQFKPKDSALLRIEIE-MLGLSKRLQeSHDEMKSVAKEK 1444
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEA---QARASEERVRGGRAVEEVLKASIQgVHGTVAQLG-SVGERYATAIEV 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1445 DDLQRLQEVLQSESDQLKENIKEIVAKHLETE-----EELKVAHCCL-KEQEETINELRVNLSEKETEISTIQKQ----- 1513
Cdd:TIGR02169 544 AAGNRLNNVVVEDDAVAKEAIELLKRRKAGRAtflplNKMRDERRDLsILSEDGVIGFAVDLVEFDPKYEPAFKYvfgdt 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1514 -----LEA-----INDKLQNKIQEIYEK-------------EEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESK 1570
Cdd:TIGR02169 624 lvvedIEAarrlmGKYRMVTLEGELFEKsgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENR 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1571 MLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIvakmkeSQEKEYQFLKMTAVNEtqekmcEIEHLK 1650
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL------EQEIENVKSELKELEA------RIEELE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1651 EQFETQKLNLENIETENIRltQILHENLEEMRSVTKERDDLRSVEETLKVE---RDQLKENLRETITRDLEKQEELKIvh 1727
Cdd:TIGR02169 772 EDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKlnrLTLEKEYLEKEIQELQEQRIDLKE-- 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1728 mHLKEHQETIDKLRGIVSEKTNEISNMQ---KDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEktdkl 1804
Cdd:TIGR02169 848 -QIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE----- 921
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1805 snmqkdlensnakLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENlNLAqklhenLEEM 1884
Cdd:TIGR02169 922 -------------LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVN-MLA------IQEY 981
|
890 900 910
....*....|....*....|....*....|.
gi 71061468 1885 KSVMKERDNLRRVEETLKLERDQLKESLQET 1915
Cdd:TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1163-1929 |
6.72e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.74 E-value: 6.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1163 LKNELKNKELTL-----EHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL 1237
Cdd:TIGR02168 218 LKAELRELELALlvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1238 KIAHIHLKEHQETIDELRRSVSEKTAQIINTQ----DLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQETMNELEllte 1313
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQLEELEskldELAEELAELEEKLEELKEELESLEA--ELEELEAELEELE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1314 qsttkdsTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQsKQEQSLNMK 1393
Cdd:TIGR02168 372 -------SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-LKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1394 EKDNETTKIVSEMEQFKpkdSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKE------ 1467
Cdd:TIGR02168 444 ELEEELEELQEELERLE---EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNqsglsg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1468 ---IVAKHLETEEELKVA---------HCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQF 1535
Cdd:TIGR02168 521 ilgVLSELISVDEGYEAAieaalggrlQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1536 NIKQISEVQEK----------------VNELKQFKEHRKAKDSALQSI--------------------ESKMLELTNRLQ 1579
Cdd:TIGR02168 601 LGVAKDLVKFDpklrkalsyllggvlvVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggsaktNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1580 ESQEEIQIMIKEKEEMKRVQEALQIERDQLKEntkEIVAKMKESQEKEYQFLKMTAVNETQEKmcEIEHLKEQFETQKLN 1659
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEE---ELEQLRKELEELSRQISALRKDLARLEA--EVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1660 LENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE----------NLRETITRDLEKQEELKIVH-- 1727
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldelraeltLLNEEAANLRERLESLERRIaa 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1728 --MHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKA---QDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTD 1802
Cdd:TIGR02168 836 teRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1803 KLSNMQKDLENSNAKLQE---KIQEL--KANEHQLITLKKDVNETQKKVSEMEQLKKQIKdqSLTLSKLEIENLNLAQkl 1877
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGlevRIDNLqeRLSEEYSLTLEEAEALENKIEDDEEEARRRLK--RLENKIKELGPVNLAA-- 991
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 71061468 1878 henLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETkarDLEIQQELKTA 1929
Cdd:TIGR02168 992 ---IEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI---DREARERFKDT 1037
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
496-1362 |
1.37e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 496 IESELNSLRADYdnLVLDYEQLRTEKEEMELKLKEKNDldEFEALERKTkkdQEMQLIHEISNLKNLVKHAEVynQDLEN 575
Cdd:TIGR02168 218 LKAELRELELAL--LVLRLEELREELEELQEELKEAEE--ELEELTAEL---QELEEKLEELRLEVSELEEEI--EELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 576 ELSSKVELLREKEDQIKKLQEyidsqKLENIKMDLSYSLESIEDPKQMKQTLfDAETVALDAKRESafLRSENLELKEKM 655
Cdd:TIGR02168 289 ELYALANEISRLEQQKQILRE-----RLANLERQLEELEAQLEELESKLDEL-AEELAELEEKLEE--LKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 656 KELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITkltslidgkvpkdllcnlELEGKITDLQKELNKEVEE 735
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE------------------RLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 736 NEALREEvILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLleeigktKDDLATTQSNYKST 815
Cdd:TIGR02168 423 IEELLKK-LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-------ERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 816 DQEFQNFktlhMDFEQKYKMVLEENERMNQeIVNLSKEAQKFDSSLG-ALKTELSYKTQELQEKTREVQERlnEMEQLKE 894
Cdd:TIGR02168 495 ERLQENL----EGFSEGVKALLKNQSGLSG-ILGVLSELISVDEGYEaAIEAALGGRLQAVVVENLNAAKK--AIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 895 QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTvnmnidtqEQLRNALESLK 974
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV--------DDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 975 Q--HQETINTLKSKI--------SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQ-QR 1043
Cdd:TIGR02168 640 KlrPGYRIVTLDGDLvrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQlRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1044 KIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLA 1123
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1124 EVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKI----NEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSIT 1199
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIaateRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1200 KERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRrsvsektAQIINTQDlekshtKLQ 1279
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE-------VRIDNLQE------RLS 946
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1280 EEIPVLHEEQELLPNVKEvSETQETMNELELLTEQsttkdsttLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKE 1359
Cdd:TIGR02168 947 EEYSLTLEEAEALENKIE-DDEEEARRRLKRLENK--------IKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
...
gi 71061468 1360 ALE 1362
Cdd:TIGR02168 1018 TLE 1020
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1190-2075 |
1.54e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 93.59 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1190 ENYEEVKSITKErkVLKELQKsFETERDHLRGYireieaTGLQTKEELKIAHIHLKEhqetIDELRRSVSEKTAQIintQ 1269
Cdd:TIGR02169 184 ENIERLDLIIDE--KRQQLER-LRREREKAERY------QALLKEKREYEGYELLKE----KEALERQKEAIERQL---A 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1270 DLEKSHTKLQEEIPVLHEE-QELLPNVKEVSETQETMNELELLTEQsttkdsTTLARIEMERLRLNEKFQESQEEIKSLT 1348
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRlEEIEQLLEELNKKIKDLGEEEQLRVK------EKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1349 KERDNLKTIKEALEVKHDQLKEHIRETlaKIQESQSKQEqslnMKEKDNETTKIVSEMEQfkpKDSALLRIEIEMLGLSK 1428
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEE--RKRRDKLTEE----YAELKEELEDLRAELEE---VDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1429 RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEIS 1508
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1509 TIQKQLEAINDKLQNKIQEIYEKEEQfnikqiseVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQ-- 1586
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQ--------ARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEva 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1587 -------IMIKEKEEMKRVQEALQieRDQLKENTKEIVAKMKeSQEKEYQFLKMTAVNETQEKMCEIEhlkEQFET---- 1655
Cdd:TIGR02169 545 agnrlnnVVVEDDAVAKEAIELLK--RRKAGRATFLPLNKMR-DERRDLSILSEDGVIGFAVDLVEFD---PKYEPafky 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1656 ---QKLNLENIETE-----NIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKEnlretITRDLEKQE-ELKIV 1726
Cdd:TIGR02169 619 vfgDTLVVEDIEAArrlmgKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQR-----LRERLEGLKrELSSL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1727 HMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSND---ALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDK 1803
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeeeKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1804 LSNMQKDLENSNAKL-QEKIQELKAnehQLITLKKDVNETQKKVSEMEQlkkqikdqslTLSKLEIENLNLAQKLHENLE 1882
Cdd:TIGR02169 774 LHKLEEALNDLEARLsHSRIPEIQA---ELSKLEEEVSRIEARLREIEQ----------KLNRLTLEKEYLEKEIQELQE 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1883 EMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQIsDIQKDLD 1962
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI-EKKRKRL 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1963 KskdELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNFQltkklheSLEEIRIVAKERD 2042
Cdd:TIGR02169 920 S---ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNML-------AIQEYEEVLKRLD 989
|
890 900 910
....*....|....*....|....*....|....
gi 71061468 2043 ELRRIKESLKMERDQfiatLREMIAR-DRQNHQV 2075
Cdd:TIGR02169 990 ELKEKRAKLEEERKA----ILERIEEyEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
715-1586 |
2.82e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.43 E-value: 2.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 715 NLELEGKITDLQKELNKEVEENEALreevILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGL 794
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELA----LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 795 LEEIGKTkddlattqsnykstDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS---YK 871
Cdd:TIGR02168 280 EEEIEEL--------------QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAeleEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 872 TQELQEKTREVQERLNEMEQLKEQLENRDSTLQT-VEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS 950
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 951 DIHDTVNMNIDTQ----EQLRNALESLKQHQETINTLKSKISEEVSRNlhmEENTGETKDEFQQKMVGIDKKQDLEAkNT 1026
Cdd:TIGR02168 426 LLKKLEEAELKELqaelEELEEELEELQEELERLEEALEELREELEEA---EQALDAAERELAQLQARLDSLERLQE-NL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1027 QTLTADVKdnEIIEQQRKI-------FSLIQEKNELQQMLESVIAEKEQ-LKTDLKENIEMTIENQEELRL-----LGDE 1093
Cdd:TIGR02168 502 EGFSEGVK--ALLKNQSGLsgilgvlSELISVDEGYEAAIEAALGGRLQaVVVENLNAAKKAIAFLKQNELgrvtfLPLD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1094 LKKQQEIVAQEKNHAIKKEGELSrTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMsEMQKKINEIEN---LKNEL--- 1167
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLG-VAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL-ELAKKLRPGYRivtLDGDLvrp 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1168 --------KNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKI 1239
Cdd:TIGR02168 658 ggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1240 AHIHLKEHQETIDELRRSVSEKTAQI-INTQDLEKSHTKLQEEIPVLHEEQELLpnvkevsetQETMNELELLTEQsttk 1318
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIeELEERLEEAEEELAEAEAEIEELEAQI---------EQLKEELKALREA---- 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1319 dsttLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEvkhdQLKEHIRETLAKIQESQSKQEQSLNMKEKD-N 1397
Cdd:TIGR02168 805 ----LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESElE 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1398 ETTKIVSEMEQfkpkdsallrieiEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEE 1477
Cdd:TIGR02168 877 ALLNERASLEE-------------ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1478 ELKVahcclkEQEETINELRVNLSEKETEISTIQKQLeainDKLQNKIQEI----YEKEEQFnikqiSEVQEKVNEL-KQ 1552
Cdd:TIGR02168 944 RLSE------EYSLTLEEAEALENKIEDDEEEARRRL----KRLENKIKELgpvnLAAIEEY-----EELKERYDFLtAQ 1008
|
890 900 910
....*....|....*....|....*....|....
gi 71061468 1553 FKEHRKAKDSALQSIESKMLELTNRLQESQEEIQ 1586
Cdd:TIGR02168 1009 KEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
542-1374 |
4.53e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.04 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 542 RKTKKDQEMQLIHEISNLKNLvkhaevynQDLENELSSKVELLREKEDQIKKLQEYidSQKLENIKMDLSY--------S 613
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRL--------EDILNELERQLKSLERQAEKAERYKEL--KAELRELELALLVlrleelreE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 614 LESIEDPKQMKQTLFDAETVALDAKRES-AFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQS 692
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKlEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 693 AFNEITKLTSLIDgkvpkDLLCNL-ELEGKITDLQKELNKEVEENEALREEV-ILLSELKSLPSEVERLRKEIQDKSEEL 770
Cdd:TIGR02168 321 LEAQLEELESKLD-----ELAEELaELEEKLEELKEELESLEAELEELEAELeELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 771 HIITSEKDKLFSEVVHKESRVQGLLEEIG-----KTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQ 845
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEellkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 846 EIVNLSKEAQKFDSSLGALKTELsyktQELQEKTREVQERLNEMEQLKeQLENRDSTLQTVERE-------------KTL 912
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQ----ENLEGFSEGVKALLKNQSGLS-GILGVLSELISVDEGyeaaieaalggrlQAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 913 ITEKLQQTLEEVKTLTQEK---------DDLK-QLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINT 982
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQNElgrvtflplDSIKgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 983 LKSKIseEVSRNLHMEENTGETKDEFQQK---MVGIDKKQDLEAKNTQTLTADVKdNEIIEQQRKIFSLIQEKNELQQML 1059
Cdd:TIGR02168 631 LDNAL--ELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERRREIEELE-EKIEELEEKIAELEKALAELRKEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1060 ESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1140 QQQLLNVQEEMSEMQKKI----NEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETE 1215
Cdd:TIGR02168 788 EAQIEQLKEELKALREALdelrAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1216 RDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQD-LEKSHTKLQEEIPVLHEEQELLPN 1294
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREkLAQLELRLEGLEVRIDNLQERLSE 947
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1295 vkEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRE 1374
Cdd:TIGR02168 948 --EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1152-2065 |
5.02e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 5.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1152 EMQKKINEIENLKNELKNKeltLEHMETERlELAQKLNENYEEVKSItkERKVLKELQKSFETERDHLRGYIREIEatgl 1231
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQ---LKSLERQA-EKAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAE---- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1232 qtkEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPvlHEEQELLPNVKEVSETQETMNELELL 1311
Cdd:TIGR02168 253 ---EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE--QQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1312 TEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEqsln 1391
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE---- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1392 mkekdnettkivsemeqfkpkdsallRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRlqEVLQSESDQLKENIKEIVAK 1471
Cdd:TIGR02168 404 --------------------------RLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1472 HLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQF-NIKQISEVQEKVNEL 1550
Cdd:TIGR02168 456 LERLEEA-------LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLkNQSGLSGILGVLSEL 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1551 KQF-KEHRKAKDSALQSIeskMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQekeyq 1629
Cdd:TIGR02168 529 ISVdEGYEAAIEAALGGR---LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGF----- 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1630 flkMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENirltQILHENLEEMRSVTKERDDLRSV---------EETLKV 1700
Cdd:TIGR02168 601 ---LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL----ELAKKLRPGYRIVTLDGDLVRPGgvitggsakTNSSIL 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1701 ERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAH 1780
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1781 MHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQs 1860
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR- 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1861 ltLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETV 1940
Cdd:TIGR02168 833 --IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1941 DKLREKISEKTIQISDIQKDLDKskdeLQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDN 2020
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEG----LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
|
890 900 910 920
....*....|....*....|....*....|....*....|....*
gi 71061468 2021 FQLTkklheSLEEIRIVAKERDELRRIKESLKMERDQFIATLREM 2065
Cdd:TIGR02168 987 VNLA-----AIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
880-1707 |
1.42e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.13 E-value: 1.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 880 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMN 959
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 960 IDTQEQLRNALESLKQHQETINTLKSKISEEVSR--------NLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTA 1031
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEieqlleelNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1032 DVKDNEiiEQQRKIFSLI----QEKNELQQMLESVIAEKEQLKTDLKE--NIEMTIENQ-----EELRLLGDELKKQQEI 1100
Cdd:TIGR02169 316 ELEDAE--ERLAKLEAEIdkllAEIEELEREIEEERKRRDKLTEEYAElkEELEDLRAEleevdKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1101 VAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIE-----------NLKNELKN 1169
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleqlaadlsKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1170 KELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREI------EATGLQTKEELKIAHIH 1243
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgerYATAIEVAAGNRLNNVV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1244 LKEH---QETIDEL-RRSVSEKTAQIIN-----TQDLEKSHTK--LQEEIPVLHEEQELLPNVKEVSETQETMNELELLT 1312
Cdd:TIGR02169 554 VEDDavaKEAIELLkRRKAGRATFLPLNkmrdeRRDLSILSEDgvIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1313 EQ------------------STTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRE 1374
Cdd:TIGR02169 634 RLmgkyrmvtlegelfeksgAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1375 TLAKIQESQSKQEQSLNMKEKDNEttkivsEMEQFKPKDSAllrieiemlgLSKRLQESHDEMKSVAKEKDDLQRlqevl 1454
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKE------RLEELEEDLSS----------LEQEIENVKSELKELEARIEELEE----- 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1455 qsESDQLKENIKEIVAKHLETEEELKVAHccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEq 1534
Cdd:TIGR02169 773 --DLHKLEEALNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE- 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1535 fnikQISEVQEKVNELKQFKEhrkAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTK 1614
Cdd:TIGR02169 848 ----QIKSIEKEIENLNGKKE---ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1615 EIVAKM--KESQEKEYQFLKMTAVNETQEKMCEiehlkeqfETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLR 1692
Cdd:TIGR02169 921 ELKAKLeaLEEELSEIEDPKGEDEEIPEEELSL--------EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
|
890
....*....|....*
gi 71061468 1693 SVEETLKVERDQLKE 1707
Cdd:TIGR02169 993 EKRAKLEEERKAILE 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
871-1622 |
2.16e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 2.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 871 KTQELQEKTREVQERL--NEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 948
Cdd:TIGR02168 214 RYKELKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 949 KSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKiSEEVSRNLH-MEENTGETKDEFQQKMVGIDKKQDLEAKNTQ 1027
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESK-LDELAEELAeLEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1028 TLTAdvKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKtdlkENIEMTIENQEEL--RLLGDELKKQQEIVAQEK 1105
Cdd:TIGR02168 373 RLEE--LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE----DRRERLQQEIEELlkKLEEAELKELQAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1106 NHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENL----KNELKNKE-------LTL 1174
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvKALLKNQSglsgilgVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1175 EHMETER-----LELAQKLNENYEEVKSITKERKVLkELQKSFETERDHL----RGYIREIEATGLQTKEELKIAHIHLK 1245
Cdd:TIGR02168 527 ELISVDEgyeaaIEAALGGRLQAVVVENLNAAKKAI-AFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1246 EHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIP----------------------------VLHEEQELLPNVKE 1297
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggsaktnssILERRREIEELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1298 VSETQETMNELE-----LLTEQSTTKDSTTLARIEMERL------------RLNEKFQESQEEIKSLTKERDNLKTIKEA 1360
Cdd:TIGR02168 686 IEELEEKIAELEkalaeLRKELEELEEELEQLRKELEELsrqisalrkdlaRLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1361 LEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ-----FKPKDSALLRIEIEMLGLSKRLQESHD 1435
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneeAANLRERLESLERRIAATERRLEDLEE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1436 EMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLE 1515
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1516 AINDKLQNKIQEIYEKEEQFNIKQISEVQEkvnelkqFKEHRKAKDSALQSIESKMLELTNRLQE-------SQEEIQIM 1588
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLSEEYSLTLEE-------AEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEEL 998
|
810 820 830
....*....|....*....|....*....|....
gi 71061468 1589 IKEKEEMKRVQEALQIERDQLKENTKEIVAKMKE 1622
Cdd:TIGR02168 999 KERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1052-1928 |
8.27e-17 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 87.87 E-value: 8.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1052 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRllgdelkkQQEIVAQEKNHAIKKEGE-LSRTCDRLAEVEEKLK 1130
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLR--------QSVIDLQTKLQEMQMERDaMADIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1131 EKSQQLQEKQQQLLNVQEEMseMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSI---------TKE 1201
Cdd:pfam15921 145 NQLQNTVHELEAAKCLKEDM--LEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMstmhfrslgSAI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1202 RKVLKELqksfETERDHLRGYIREIE--ATGLQTKEELKIaHIHLKEHQETIDELrrsVSEKTAQIINTQDLEKSH---- 1275
Cdd:pfam15921 223 SKILREL----DTEISYLKGRIFPVEdqLEALKSESQNKI-ELLLQQHQDRIEQL---ISEHEVEITGLTEKASSArsqa 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1276 TKLQEEIPVLHEE--QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDN 1353
Cdd:pfam15921 295 NSIQSQLEIIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1354 LKtikealevkhDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEME-QFKPKDSALLRIEIEMLGLSKRLQ- 1431
Cdd:pfam15921 375 LD----------DQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRrELDDRNMEVQRLEALLKAMKSECQg 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1432 ESHDEMKSVAKEKDDLQRLQEvLQSESDQLKENIKEIVakhleteEELKVAHCCLKEQEETINELRVNLSEKETEISTIQ 1511
Cdd:pfam15921 445 QMERQMAAIQGKNESLEKVSS-LTAQLESTKEMLRKVV-------EELTAKKMTLESSERTVSDLTASLQEKERAIEATN 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1512 KQLEAINDKLQNKIQEIyekeeqfnikqisevqekvNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE 1591
Cdd:pfam15921 517 AEITKLRSRVDLKLQEL-------------------QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQL 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1592 KEEMKRVQEALQIERDQLKentKEIVAKMKESQekEYQFLKmtavNETQEKMCEIEHLKEQFETQKLNLENIETENIR-L 1670
Cdd:pfam15921 578 VGQHGRTAGAMQVEKAQLE---KEINDRRLELQ--EFKILK----DKKDAKIRELEARVSDLELEKVKLVNAGSERLRaV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1671 TQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEKTNE 1750
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKV 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1751 ISNMQKDLEHSN---DALKAQDLKIQEELRIAHMH---LKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQE 1824
Cdd:pfam15921 729 AMGMQKQITAKRgqiDALQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1825 LkanEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ-SLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKL 1903
Cdd:pfam15921 809 M---EVALDKASLQFAECQDIIQRQEQESVRLKLQhTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTASF 885
|
890 900
....*....|....*....|....*...
gi 71061468 1904 --ERDQLKESLQETKARDL-EIQQELKT 1928
Cdd:pfam15921 886 lsHHSRKTNALKEDPTRDLkQLLQELRS 913
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
646-1468 |
1.65e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.66 E-value: 1.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 646 SENLELKEKMKELATTYKQMENDIQLYQ-----SQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKvpkdllcNLELEg 720
Cdd:TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISEL-------EKRLE- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 721 KITDLQKELNKEVEEnEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGK 800
Cdd:TIGR02169 269 EIEQLLEELNKKIKD-LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 801 TKDDLATTQSNYKSTDQEFqnfktlhMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTR 880
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 881 EVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHD---TVN 957
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEaeaQAR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 958 MNIDTQEQLRNALESLKQHQETI-NTLKSKISEEVSRNLHMEENTGetkdefqQKMVGIDKKQDLEAKNTQTLTADVKDN 1036
Cdd:TIGR02169 501 ASEERVRGGRAVEEVLKASIQGVhGTVAQLGSVGERYATAIEVAAG-------NRLNNVVVEDDAVAKEAIELLKRRKAG 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1037 EI-------IEQQRKIFSLIQEKNELQQMLESVIAEKEQLK--------TDLKENIEMTIENQEELRLL---GDELKKQQ 1098
Cdd:TIGR02169 574 RAtflplnkMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdTLVVEDIEAARRLMGKYRMVtleGELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1099 EIV------AQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENlknelknkel 1172
Cdd:TIGR02169 654 AMTggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1173 tlehmetERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL-----KIAHIHLKEH 1247
Cdd:TIGR02169 724 -------EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEI 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1248 QETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMN--ELELLTEQSTTKDStTLAR 1325
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARL---REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIekEIENLNGKKEELEE-ELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1326 IEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSE 1405
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71061468 1406 MEQFKPKdsaLLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI 1468
Cdd:TIGR02169 953 LEDVQAE---LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1006-1552 |
4.38e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 4.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1006 DEFQQKMVGIDKKQDLEAKNTQTLTADV--KDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIEN 1083
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELaeLEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1084 QEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENL 1163
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1164 KNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRgyiREIEATGLQTKEELKIAHIH 1243
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---AELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1244 LKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEqsttkdsTTL 1323
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE-------AAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1324 ARIEMERLRLNEkfQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSlnmKEKDNETTKIV 1403
Cdd:COG1196 545 AAALQNIVVEDD--EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL---READARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1404 SEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAH 1483
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 1484 CCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQ------ISEVQEKVNELKQ 1552
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEElpeppdLEELERELERLER 774
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
717-1280 |
7.38e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.26 E-value: 7.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 717 ELEGKITDLQKELNKEVEENEALREeviLLSELKSLPSEVERLRKEIQDKSEELHIITSEK---DKLFSEVVHKESRVQG 793
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKE---KEKELEEVLREINEISSELPELREELEKLEKEVkelEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 794 LLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQ------KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTE 867
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 868 LSyKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITE-KLQQTLEEVKTLTQEKDDLKQLQESLQIERD 946
Cdd:PRK03918 330 IK-ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 947 QLKSDIHDTVNMnidtQEQLRNALESLKQHQETINTLKSKISEEVSRNLhMEENTGETKDEFQQKMVGIDKKQDLEAKnt 1026
Cdd:PRK03918 409 KITARIGELKKE----IKELKKAIEELKKAKGKCPVCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKE-- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1027 qtltaDVKDNEIIEQQRKIFSliqekneLQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKN 1106
Cdd:PRK03918 482 -----LRELEKVLKKESELIK-------LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1107 HAIKKEGELSRTCDRLAEVEEKLKE-KSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELA 1185
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1186 QKLNENYEEVKSITKERKVLKELQKSF-ETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQ 1264
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
570
....*....|....*.
gi 71061468 1265 IINTQDLEKSHTKLQE 1280
Cdd:PRK03918 710 KKELEKLEKALERVEE 725
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1359-1976 |
9.52e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.88 E-value: 9.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1359 EALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ-FKPKDSALLRIEIEMLGLSKRLQEshdeM 1437
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLReINEISSELPELREELEKLEKEVKE----L 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1438 KSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRvnlsEKETEISTIQKQLEAI 1517
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE----LEEKVKELKELK----EKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1518 NDKLQN--KIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKakdsalqsieskmleltnRLQESQEEIQIMIKEKEEM 1595
Cdd:PRK03918 306 LDELREieKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK------------------ELEKRLEELEERHELYEEA 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1596 KRVQEALQIERDQLKENTKEIVAKMKESQEKEyqflKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR------ 1669
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKA----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgr 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1670 -LTQilHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLREtITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEKT 1748
Cdd:PRK03918 444 eLTE--EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE-LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1749 NEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKAN 1828
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1829 EHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEienlNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQL 1908
Cdd:PRK03918 601 YNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE----KRLEELRKELEELEKKYSEEEYEELREEYLELSRELA 676
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1909 KeslqetkardleIQQELKTARMLSKEHKETVDKLR---EKISEKTIQISDIQKDLDKSKdELQKKIQELQ 1976
Cdd:PRK03918 677 G------------LRAELEELEKRREEIKKTLEKLKeelEEREKAKKELEKLEKALERVE-ELREKVKKYK 734
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
964-1757 |
9.89e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.80 E-value: 9.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 964 EQLRNALESLKQHQETINTLKSKIsEEVSRNLHMEENTGETKDEFQQKMvgiDKKQDLEAkntqtlTADVKDNEIIEQQR 1043
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLII-DEKRQQLERLRREREKAERYQALL---KEKREYEG------YELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1044 kifsliqeknelqQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKK-----EGELSRT 1118
Cdd:TIGR02169 240 -------------EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkigelEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1119 CDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEI----ENLKNELKNKELTLEHMETERLELAQKLNENYEE 1194
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEErkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1195 VKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQ----D 1270
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAadlsK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1271 LEKSHTKLQEEIPVLHEEQELLPnvKEVSETQETMNELEllTEQSTTKDSTTL--ARIE------MERLRLNEKFQESQE 1342
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQ--RELAEAEAQARASE--ERVRGGRAVEEVlkASIQgvhgtvAQLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1343 -----EIKSLTKERDNlkTIKEALEVkhdqLKEHI--RET---LAKIQESQSKQEQS---------LNMKEKDNE----- 1398
Cdd:TIGR02169 543 vaagnRLNNVVVEDDA--VAKEAIEL----LKRRKagRATflpLNKMRDERRDLSILsedgvigfaVDLVEFDPKyepaf 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1399 -----TTKIVSEMEQFKPK---------DSALLRIEIEMLG--------------LSKRLQESHDEMKSVAKEKDDLQRL 1450
Cdd:TIGR02169 617 kyvfgDTLVVEDIEAARRLmgkyrmvtlEGELFEKSGAMTGgsraprggilfsrsEPAELQRLRERLEGLKRELSSLQSE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1451 QEVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELrvnLSEKETEISTIQKQLEAINDKLQNKIQEIYE 1530
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKER---LEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1531 KEEQFNIKQI-----------SEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ 1599
Cdd:TIGR02169 770 LEEDLHKLEEalndlearlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1600 EALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTA-----VNETQEKMCEIEHLKEQFETQ--------KLNLENIETE 1666
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdlkkeRDELEAQLRELERKIEELEAQiekkrkrlSELKAKLEAL 929
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1667 NIRLTQILhENLEEMRSVTKERDDLRSVEETL-KVERDQlkENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVS 1745
Cdd:TIGR02169 930 EEELSEIE-DPKGEDEEIPEEELSLEDVQAELqRVEEEI--RALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
890
....*....|..
gi 71061468 1746 EKTNEISNMQKD 1757
Cdd:TIGR02169 1007 ERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
832-1381 |
1.35e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 832 KYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKT 911
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 912 LITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEV 991
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 992 SRNLHMEENTGETKDEFQQKMVGIDK-KQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLK 1070
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERlEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1071 TDLKENIEMTIENQEELRLLGDELKKQQEIVAQE-----KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLN 1145
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFlegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1146 VQEEMSEMQkkinEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIRE 1225
Cdd:COG1196 553 VEDDEVAAA----AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1226 IEAtglqtkEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETM 1305
Cdd:COG1196 629 AAR------LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 1306 NELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQE 1381
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1074-1723 |
2.39e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 76.26 E-value: 2.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1074 KENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1153
Cdd:PRK03918 178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1154 QKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEAtgLQT 1233
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE--LEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1234 KEElkiahiHLKEHQETIDELRRSVSEktaqiintqdLEKSHtKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTE 1313
Cdd:PRK03918 336 KEE------RLEELKKKLKELEKRLEE----------LEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1314 QSTTkdsttlarIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLakiqesqsKQEQSLNMK 1393
Cdd:PRK03918 399 AKEE--------IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL--------LEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1394 EKDNETTKIVSEMEQFKPKdsaLLRIEIEMLGLSK--RLQESHDEMKSVAKEkddlqrLQEVLQSESDQLKENIKEIVAK 1471
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKE---LRELEKVLKKESEliKLKELAEQLKELEEK------LKKYNLEELEKKAEEYEKLKEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1472 HLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLqnkiqeiyekeEQFNIKQISEVQEKVNELK 1551
Cdd:PRK03918 534 LIKLKGEIKS----LKKELEKLEELKKKLAELEKKLDELEEELAELLKEL-----------EELGFESVEELEERLKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1552 QFKEhrkakdsalqsiesKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFL 1631
Cdd:PRK03918 599 PFYN--------------EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1632 KmtavNETQEKMCEIEHLKEQFETqklnLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRE 1711
Cdd:PRK03918 665 R----EEYLELSRELAGLRAELEE----LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKAL 736
|
650
....*....|..
gi 71061468 1712 TITRDLEKQEEL 1723
Cdd:PRK03918 737 LKERALSKVGEI 748
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1335-1929 |
4.33e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 4.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1335 EKFQESQEEIK-----SLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQslnmkekdnETTKIVSEMEQF 1409
Cdd:COG1196 213 ERYRELKEELKeleaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE---------LRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1410 KPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQ 1489
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1490 EETINELRVNLSEKETEISTIQKQLEAINDK---LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQS 1566
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAaaeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1567 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL--KENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMC 1644
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELaeAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1645 E--------------------------------------IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTK 1686
Cdd:COG1196 524 GavavligveaayeaaleaalaaalqnivveddevaaaaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1687 ERDDLRSVEETLKVERDQLKENLRETITRDLEK------QEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEH 1760
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALrravtlAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1761 SNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVN 1840
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1841 ETQKKVsemEQLKKQIKdqsltlsklEIENLNLAQklhenLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETkarDL 1920
Cdd:COG1196 764 ELEREL---ERLEREIE---------ALGPVNLLA-----IEEYEELEERYDFLSEQREDLEEARETLEEAIEEI---DR 823
|
....*....
gi 71061468 1921 EIQQELKTA 1929
Cdd:COG1196 824 ETRERFLET 832
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
964-1550 |
5.25e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 75.10 E-value: 5.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 964 EQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQR 1043
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1044 KIFsliqekNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHaIKKEGELSRTCDRLA 1123
Cdd:PRK03918 238 EEI------EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY-IKLSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1124 EVEEKLKEKSqqlqekqQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMET--ERLELAQKLNENYEEVKS---- 1197
Cdd:PRK03918 311 EIEKRLSRLE-------EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELERLKKrltg 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1198 -----ITKERKVLKELQKSFETERDHLRGYIREIEatglQTKEELKIAHIHLKEHQETIDELRRSVSEK---------TA 1263
Cdd:PRK03918 384 ltpekLEKELEELEKAKEEIEEEISKITARIGELK----KEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelleeyTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1264 QIIN-TQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQE 1342
Cdd:PRK03918 460 ELKRiEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1343 EIKSLTKERDNLKTIK---EALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKekdnettkiVSEMEQFKPKDSALLRI 1419
Cdd:PRK03918 540 EIKSLKKELEKLEELKkklAELEKKLDELEEELAELLKELEELGFESVEELEER---------LKELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1420 EIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK-----ENIKEIVAKHLETEEELKVAHCCLKEQEETIN 1494
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1495 ELRVNLSEKETEISTIQKQLEAIND--KLQNKIQEIYEKEEQFNIKQISEVQEKVNEL 1550
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKleKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1441-1984 |
1.09e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.92 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1441 AKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVnlseketeistiqkqLEAINDK 1520
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET---------------LEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1521 LQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAK----DSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMK 1596
Cdd:PRK02224 263 LRETIAETEREREELA-EEVRDLRERLEELEEERDDLLAEagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1597 RVQEALQIERDQLKENTKEIVAKMKESqEKEYQFLKmTAVNETQEKMC----EIEHLKEQFETQKLNLENIETENirltQ 1672
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAEL-ESELEEAR-EAVEDRREEIEeleeEIEELRERFGDAPVDLGNAEDFL----E 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1673 ILHENLEEMRSVTKE-RDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIvhmhLKEHQETIDKLRGIVSEKTNEI 1751
Cdd:PRK02224 416 ELREERDELREREAElEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET----IEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1752 SNMQKDLEHSNDALKAQDlKIQEelriahmhLKEQQETIDKL----RGIVSEKTDKLSNMQKDLENSNAKLQEKiqELKA 1827
Cdd:PRK02224 492 EEVEERLERAEDLVEAED-RIER--------LEERREDLEELiaerRETIEEKRERAEELRERAAELEAEAEEK--REAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1828 NEhqlitLKKDVNETQKKVSEMEQLKKQIKDqsltlsklEIENLNlaqKLHENLEEMKSVMKERDNLRRVEETLKLERDQ 1907
Cdd:PRK02224 561 AE-----AEEEAEEAREEVAELNSKLAELKE--------RIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1908 LKESLQETKARDLEIQQELKTARM-LSKEHKETVDKLREKISEKTiqisdiqKDLDKSKDELQKKIQ--ELQKKELQLLR 1984
Cdd:PRK02224 625 RRERLAEKRERKRELEAEFDEARIeEAREDKERAEEYLEQVEEKL-------DELREERDDLQAEIGavENELEELEELR 697
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-1265 |
1.70e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 1.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 512 LDYEQLRTEKEEMELKLKekndLDEFEALERktkkdQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQI 591
Cdd:TIGR02169 211 ERYQALLKEKREYEGYEL----LKEKEALER-----QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 592 KKL--QEYIDSQ-KLENIKMDLSySLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLE------------LKEKMK 656
Cdd:TIGR02169 282 KDLgeEEQLRVKeKIGELEAEIA-SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEreieeerkrrdkLTEEYA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 657 ELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCN---LELEGKITDLQKELNKEV 733
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSeelADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 734 EENEALREEVILLS-ELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEE----------IGKTK 802
Cdd:TIGR02169 441 EEKEDKALEIKKQEwKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraveevLKASI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 803 DDLATTQSNYKSTDQEFQnfKTLHMDFEQKYKMVLEENERMNQEIVNLSKE---------------AQKFDSSLGALKTE 867
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERYA--TAIEVAAGNRLNNVVVEDDAVAKEAIELLKRrkagratflplnkmrDERRDLSILSEDGV 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 868 LSYKTQ--ELQEKTREVQER-------LNEMEQLKEQLEN-RDSTL--QTVER----------EKTLITEKLQQtLEEVK 925
Cdd:TIGR02169 599 IGFAVDlvEFDPKYEPAFKYvfgdtlvVEDIEAARRLMGKyRMVTLegELFEKsgamtggsraPRGGILFSRSE-PAELQ 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 926 TLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETK 1005
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1006 DEFQQKMVGIDKKQdLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQL---KTDLKENIEMTIE 1082
Cdd:TIGR02169 758 SELKELEARIEELE-EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKlnrLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1083 NQEELRLLGDELKKqqeivaqeknhAIKKEGELSRTcdRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIEN 1162
Cdd:TIGR02169 837 ELQEQRIDLKEQIK-----------SIEKEIENLNG--KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1163 LKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATG------LQTKEE 1236
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlaIQEYEE 983
|
810 820
....*....|....*....|....*....
gi 71061468 1237 LKIAHIHLKEHQETIDELRRSVSEKTAQI 1265
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
649-1210 |
3.56e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 649 LELKEKMKELattykqmenDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKE 728
Cdd:COG1196 216 RELKEELKEL---------EAELLLLKLRELEAELEELEAELEELEAELEELEAELA-----------ELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 729 LNKEVEENEALREEVILLSelkslpSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATT 808
Cdd:COG1196 276 LEELELELEEAQAEEYELL------AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 809 QSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNE 888
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 889 MEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRN 968
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 969 ALESLKqhqetiNTLKSKISEEVSRNLHMEE---------------NTGETKDEFQQKMVGIDKKQDL---------EAK 1024
Cdd:COG1196 510 VKAALL------LAGLRGLAGAVAVLIGVEAayeaaleaalaaalqNIVVEDDEVAAAAIEYLKAAKAgratflpldKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1025 NTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQE 1104
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1105 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLEL 1184
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|.
gi 71061468 1185 AQKLN-----ENYEEVKSITKERKVLKELQK 1210
Cdd:COG1196 744 EEELLeeealEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1430-2155 |
3.57e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 3.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1430 LQESHDEMKSVAKEKDDLQRLQEvLQSESDQLKenIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEIST 1509
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQA-LLKEKREYE--GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1510 IQKQLEAINDKLQNKIQEiyekeeqfnikQISEVQEKVNELKqfKEHRKAKDSaLQSIESKMLELTNRLQESQEEIQIMI 1589
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEE-----------EQLRVKEKIGELE--AEIASLERS-IAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1590 KEKEEMKRVQEALQIERDQLKENTKEIVAKMkesqekeyqflkMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR 1669
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEEL------------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1670 LTQILHENLEEMRSVTKERDDLRSveetlKVERdqLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEKTN 1749
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNA-----AIAG--IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1750 EISNMQKDLEHSN---DALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSE---------------KTDKLSNMQKDL 1811
Cdd:TIGR02169 477 EYDRVEKELSKLQrelAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQlgsvgeryataievaAGNRLNNVVVED 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1812 ENSNAKLQEKIQELKANEHQLITLKK---------------------DVNETQKK--------------VSEMEQLKKQ- 1855
Cdd:TIGR02169 557 DAVAKEAIELLKRRKAGRATFLPLNKmrderrdlsilsedgvigfavDLVEFDPKyepafkyvfgdtlvVEDIEAARRLm 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1856 ------------------IKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKA 1917
Cdd:TIGR02169 637 gkyrmvtlegelfeksgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1918 RDLEIQQELKtarMLSKEHKetvdKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKIN 1997
Cdd:TIGR02169 717 KIGEIEKEIE---QLEQEEE----KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1998 E--MEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMIARDRQNHQV 2075
Cdd:TIGR02169 790 HsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2076 KPEKRLlsdgqqhlteSLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSLPYLQTKHIEKL 2155
Cdd:TIGR02169 870 LEELEA----------ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1454-2035 |
3.60e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.36 E-value: 3.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1454 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1533
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1534 QFNiKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENT 1613
Cdd:TIGR04523 125 ELN-KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1614 KEIVAKMKESQEKEYQFLKMTAVNET-----QEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKER 1688
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQlkdniEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1689 DDLRSVEETLKVERDQLKENLRETITRDLekQEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQ 1768
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQDWNKEL--KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1769 DLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDlENSNAKLQEKIQELKANEHQLitlkkdVNETQKKVSE 1848
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ-EKLNQQKDEQIKKLQQEKELL------EKEIERLKET 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1849 MEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKT 1928
Cdd:TIGR04523 435 IIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1929 ARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQ--LLRVKEDVNMSHKKINEMEQLKKQF 2006
Cdd:TIGR04523 515 LTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNkeIEELKQTQKSLKKKQEEKQELIDQK 594
|
570 580
....*....|....*....|....*....
gi 71061468 2007 EAQNLSMQSVRMDNFQLTKKLHESLEEIR 2035
Cdd:TIGR04523 595 EKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1487-2342 |
6.00e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 6.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1487 KEQEETINELRVNLSEKETEISTIQKQLEAIndKLQNKIQEIY-EKEEQFNIKQISEVqekVNELKQFKEHRKAKDSALQ 1565
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSL--ERQAEKAERYkELKAELRELELALL---VLRLEELREELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1566 SIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEivakmKESQEKEYQFLKMTAVNETQEKMCE 1645
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR-----LEQQKQILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1646 IEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLREtitrdLEKQEELKi 1725
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ-----LELQIASL- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1726 vhmhlkehqetidklrgivsekTNEISNMQKDLEHSNDALKAQDLKIQEELRiahmhlKEQQETIDKLRGIVSEKTDKLS 1805
Cdd:TIGR02168 399 ----------------------NNEIERLEARLERLEDRRERLQQEIEELLK------KLEEAELKELQAELEELEEELE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1806 NMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDqsltLSKLEIENLNLAQKLHENLEEMK 1885
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG----FSEGVKALLKNQSGLSGILGVLS 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1886 SVMKERDNLRR-VEETLKLERDQLKESLQETKARDLEIQQELKTARM----LSKEHKETVDKLREKISEKTIQISDIQKD 1960
Cdd:TIGR02168 527 ELISVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtflpLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1961 LDKSKDELQKKIQELqkkeLQLLRVKEDVNMSHKKINEMEQ-----------------LKKQFEAQNLSMQSVRMDNFQL 2023
Cdd:TIGR02168 607 LVKFDPKLRKALSYL----LGGVLVVDDLDNALELAKKLRPgyrivtldgdlvrpggvITGGSAKTNSSILERRREIEEL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2024 TKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMiarDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKEL 2103
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL---SRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2104 LKRYSEMDDHYECLNRLSLDLEKEIEFQKELSMRVKANLSLpylQTKHIEKLFTANQRCSMEFHRIMKKLKYVlsyvtki 2183
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA---LREALDELRAELTLLNEEAANLRERLESL------- 829
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2184 kEEQHESINKFEMDFIDEVEKQKELLIKIQHLQQDCDVPSRELRD-LKLNQNMDLHIEEILKDfSESEFPSIKTEFQQVL 2262
Cdd:TIGR02168 830 -ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALAL-LRSELEELSEELRELE 907
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2263 SNRKEMTQFLEEwLNTRfdIEKLKNGIQKENDRICQVNNFFNNRIIAIMNESTEFEERSATISKEWEQDLKSLKEKNEKL 2342
Cdd:TIGR02168 908 SKRSELRRELEE-LREK--LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1131 |
6.81e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 6.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 345 LKRYRKEIMDLKKQLEEVSLETRAQAMEKDQLAQLLEEKDLLQKVQNEKIENLTRMLVTSSSL--TLQQELKAKRKRRvt 422
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisRLEQQKQILRERL-- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 423 wclgkinkmknsNYADQFNIPTNITTKTHKLSINLLREIDESVCSESDVFSNTLDTLSEIEWNPATKLLNQEN----IES 498
Cdd:TIGR02168 312 ------------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESrleeLEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 499 ELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-----KNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDL 573
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERledrrERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 574 ENELSSKVELLREKEDQIKKLQEYIDSqklenikmdLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLR---SENLE 650
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQ---------LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlSELIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 651 LKEKMKELATTYkqMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELn 730
Cdd:TIGR02168 531 VDEGYEAAIEAA--LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDL- 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 731 keVEENEALReevILLSELKSLPSEVERLRKEIQDKSEELH---IITSEKDKLFSEVV---HKESRVQGLLE---EIGKT 801
Cdd:TIGR02168 608 --VKFDPKLR---KALSYLLGGVLVVDDLDNALELAKKLRPgyrIVTLDGDLVRPGGVitgGSAKTNSSILErrrEIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 802 KDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALktelsykTQELQEKTRE 881
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL-------EERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 882 VQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdtvnmnid 961
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE----------- 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 962 TQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDL--EAKNTQTLTADVKDNEII 1039
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASleEALALLRSELEELSEELR 904
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1040 EQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTienQEELRLLGDELKKQQEivaqeknhaiKKEGELSRTC 1119
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALEN----------KIEDDEEEAR 971
|
810
....*....|..
gi 71061468 1120 DRLAEVEEKLKE 1131
Cdd:TIGR02168 972 RRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1366-2129 |
7.44e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1366 DQLKEHIRETLAKIQESQSKQEqsLNMKEKDNETTKIVSEMEQ-FKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEK 1444
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLD--LIIDEKRQQLERLRREREKaERYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1445 DDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcclKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNK 1524
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1525 IQEIYEKEEQFN-----IKQISEVQEKV--------NELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE 1591
Cdd:TIGR02169 321 EERLAKLEAEIDkllaeIEELEREIEEErkrrdkltEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1592 KEEMKRVQEALQIERDQLKENTKEIVAKMK--ESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR 1669
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAgiEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1670 LTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETI--TRDLEKQEElkivhmhlkEHQETID-----KLRG 1742
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHgtVAQLGSVGE---------RYATAIEvaagnRLNN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1743 IVSEKT-----------------------NEISNMQKDLEHS---------------------------NDALKAQDLKI 1772
Cdd:TIGR02169 552 VVVEDDavakeaiellkrrkagratflplNKMRDERRDLSILsedgvigfavdlvefdpkyepafkyvfGDTLVVEDIEA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1773 QEELRIAHMHLKEQQETIDKLRGIV--SEKTDKLSNMQKDLENSNAKLQEKIQELKAnehQLITLKKDVNETQKKVSEme 1850
Cdd:TIGR02169 632 ARRLMGKYRMVTLEGELFEKSGAMTggSRAPRGGILFSRSEPAELQRLRERLEGLKR---ELSSLQSELRRIENRLDE-- 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1851 qlkkqikdqsltlskleienlnLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTAR 1930
Cdd:TIGR02169 707 ----------------------LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1931 MLSKEHKETVDKLREKISEktIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQN 2010
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2011 LSMQSVRMDNFQ----LTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREM-IARDRQNHQVKPEKRLLSDg 2085
Cdd:TIGR02169 843 IDLKEQIKSIEKeienLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELeRKIEELEAQIEKKRKRLSE- 921
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 71061468 2086 qqhLTESLREKCSRIKELLKRYSEMDDHYECLNRLSlDLEKEIE 2129
Cdd:TIGR02169 922 ---LKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAELQ 961
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1294-2057 |
7.60e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 7.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1294 NVKEVSETQETMNELELLTEQSTT---KDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTikEALEVKHDQLKE 1370
Cdd:PTZ00121 1025 NIEKIEELTEYGNNDDVLKEKDIIdedIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRAD--EATEEAFGKAEE 1102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1371 HIRETLAKIQESQSKQEQSlnMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSV----AKEKDD 1446
Cdd:PTZ00121 1103 AKKTETGKAEEARKAEEAK--KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARkaedAKKAEA 1180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1447 LQRLQEVLQSESDQLKENIKEIVAKHlETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1526
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1527 EIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAkDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIER 1606
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKA-DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1607 DQLKEntKEIVAKMKESQEKEYQflkmtavnETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRsvtK 1686
Cdd:PTZ00121 1339 EEAKK--AAEAAKAEAEAAADEA--------EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK---K 1405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1687 ERDDLRSVEETlKVERDQLKENLRETitrdlEKQEELKIVHMHLKEHQETIDKlrgivSEKTNEISNMQKDLEHSNDA-- 1764
Cdd:PTZ00121 1406 KADELKKAAAA-KKKADEAKKKAEEK-----KKADEAKKKAEEAKKADEAKKK-----AEEAKKAEEAKKKAEEAKKAde 1474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1765 --LKAQDLKIQEELRIAHMHLKEQQETIDKlrgiVSEKTDKLSNMQKDLENSNAKLQEKIQEL-KANEHQLITLKKDVNE 1841
Cdd:PTZ00121 1475 akKKAEEAKKADEAKKKAEEAKKKADEAKK----AAEAKKKADEAKKAEEAKKADEAKKAEEAkKADEAKKAEEKKKADE 1550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1842 TQK--------KVSEMEQLKKQIKDQSLTLSKLEIenlnlAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKeslQ 1913
Cdd:PTZ00121 1551 LKKaeelkkaeEKKKAEEAKKAEEDKNMALRKAEE-----AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK---A 1622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1914 ETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQisdiQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSH 1993
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK----AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 1994 KKINEMEQLKKQFEAQNLSMQSVRmdnfqltKKLHESLEEIRIVAKERDELRRIKESLKMERDQ 2057
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELK-------KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
731-1362 |
1.23e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 731 KEVEEN----EALREEVIllSELKSLPSEVERLRK--EIQDKSEELhiitsEKDKLFSEVVHKESRVQGLLEEIGKTKDD 804
Cdd:COG1196 182 EATEENlerlEDILGELE--RQLEPLERQAEKAERyrELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 805 LATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQE 884
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 885 RLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQE 964
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 965 QLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtaDVKDNEIIEQQRK 1044
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL--AELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1045 IFSLIQEKNELQQMLESVIAEKEQLKTDLKEniemtienQEELRLLGDELKKQQEIV----AQEKNHAIKKEGELSRTCD 1120
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLA--------GAVAVLIGVEAAYEAALEaalaAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1121 RLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTL-EHMETERLELAQKLNENYEEVKSIT 1199
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLgDTLLGRTLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1200 KERKVLKELQKSFE---TERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHT 1276
Cdd:COG1196 645 RLREVTLEGEGGSAggsLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1277 KLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERL-RLN----EKFQESQEEIKSLTKER 1351
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNllaiEEYEELEERYDFLSEQR 804
|
650
....*....|.
gi 71061468 1352 DNLKTIKEALE 1362
Cdd:COG1196 805 EDLEEARETLE 815
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1121-1741 |
3.25e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.30 E-value: 3.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1121 RLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITK 1200
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1201 ERKVLKElqksfETERDHLrgyirEIEATGLQtKEELkiahihlkehQETIDELRRSVSEKTAQIintQDLEKSHTKLQE 1280
Cdd:PRK02224 294 ERDDLLA-----EAGLDDA-----DAEAVEAR-REEL----------EDRDEELRDRLEECRVAA---QAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1281 EIPVLHEEQEllpnvkevsETQETMNELEllTEQSTTKDSTTLARIEMERLRlnEKFQESQEEIKSLTKERDNLKTIKEA 1360
Cdd:PRK02224 350 DADDLEERAE---------ELREEAAELE--SELEEAREAVEDRREEIEELE--EEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1361 LEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNettkiVSEMEQfkpkdsallriEIEMLGLSKRLQESHDEMKSV 1440
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLEAGK-----CPECGQ-----------PVEGSPHVETIEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1441 AKEKDDLQRLQEVLQSESDQLKEnikeivAKHLETEEELkvahccLKEQEETINELrvnLSEKETEISTIQKQLEAINDK 1520
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAED------LVEAEDRIER------LEERREDLEEL---IAERRETIEEKRERAEELRER 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1521 LQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQSIeskmleltNRLQESQEEIQIMIKEKEEMKRVQE 1600
Cdd:PRK02224 546 AAELEAEAEEKREAAA-EAEEEAEEAREEVAELNSKLAELKERIESL--------ERIRTLLAAIADAEDEIERLREKRE 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1601 ALQIERDQLKENTKEIVAKMKESQEKeyqfLKMTAVNETQEKmceiehlKEQFETQklnLENIEtenirltqilhenlEE 1680
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAE----FDEARIEEARED-------KERAEEY---LEQVE--------------EK 668
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1681 MRSVTKERDDLRSVEETLKVERDQLkENLRETITRDLEKQEELKIVHMHLKEHQETIDKLR 1741
Cdd:PRK02224 669 LDELREERDDLQAEIGAVENELEEL-EELRERREALENRVEALEALYDEAEELESMYGDLR 728
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1040-1845 |
4.69e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.84 E-value: 4.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1040 EQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTC 1119
Cdd:pfam02463 206 AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1120 DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN-----------EIENLKNELKNKELTLEHMETERLELAQKL 1188
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKkaekelkkekeEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1189 NENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDElRRSVSEKTAQIINT 1268
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELE-ILEEEEESIELKQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1269 QDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKD--STTLARIEMERLRLNEKFQESQEEIKS 1346
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeeRSQKESKARSGLKVLLALIKDGVGGRI 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1347 LTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGL 1426
Cdd:pfam02463 525 ISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILN 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1427 SKRLQES------HDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNL 1500
Cdd:pfam02463 605 LAQLDKAtleadeDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEK 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1501 SEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQE 1580
Cdd:pfam02463 685 AESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1581 SQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEhlkeqfETQKLNL 1660
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK------EEELEEL 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1661 ENIETENIRLTQILHENLEEMRSVTKERDDLRsvEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKL 1740
Cdd:pfam02463 839 ALELKEEQKLEKLAEEELERLEEEITKEELLQ--ELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKE 916
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1741 RGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEElriaHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQE 1820
Cdd:pfam02463 917 NEIEERIKEEAEILLKYEEEPEELLLEEADEKEKE----ENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNK 992
|
810 820
....*....|....*....|....*
gi 71061468 1821 KIQELKANEHQLITLKKDVNETQKK 1845
Cdd:pfam02463 993 DELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
660-1366 |
5.91e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 5.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 660 TTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDG--KVPKDLLCNLELEG-KITDLQKELNKEVEEN 736
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKIleQQIKDLNDKLKKNKdKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 737 EALREEVILL-SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKST 815
Cdd:TIGR04523 113 KNDKEQKNKLeVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 816 DQEFQNFKTLHMDFEQKykmvLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 895
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKK----IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 896 LENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDdlkqlqeslQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQ 975
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE---------QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 976 HQETINTLKSKI----SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEaKNTQTLTADVKDNEIIEQQR--KIFSLI 1049
Cdd:TIGR04523 340 LNEQISQLKKELtnseSENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE-SQINDLESKIQNQEKLNQQKdeQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1050 QEKNELQQMLESVIAEKEQLKTDLK-------------ENIEMTIENQEE-LRLLGDELKKQQEIVAQEKNHAIKKEGEL 1115
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKdltnqdsvkeliiKNLDNTRESLETqLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1116 SRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNkELTLEHMETERLELAQKLNENYEEV 1195
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF-ELKKENLEKEIDEKNKEIEELKQTQ 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1196 KSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSH 1275
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1276 TKLQEEIpvLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTlariEMERLRLNEKFQESQEEIKSLTKERDNLK 1355
Cdd:TIGR04523 658 RNKWPEI--IKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIR----IKDLPKLEEKYKEIEKELKKLDEFSKELE 731
|
730
....*....|.
gi 71061468 1356 TIKEALEVKHD 1366
Cdd:TIGR04523 732 NIIKNFNKKFD 742
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
582-1375 |
5.93e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 5.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 582 ELLREKED---QIKKLQEYIDSqkLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESaflrsENLELKEKMKEL 658
Cdd:TIGR02169 227 ELLKEKEAlerQKEAIERQLAS--LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-----EQLRVKEKIGEL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 659 attykqmENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNKEVEENEA 738
Cdd:TIGR02169 300 -------EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE-----------ELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 739 LREEV-ILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQ 817
Cdd:TIGR02169 362 LKEELeDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 818 EFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLE 897
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 898 NRDST---LQTVEREKTLITE-----KLQQTLEEVKTLTQEKDDL---------------KQLQESLQIERDQLKSDIHD 954
Cdd:TIGR02169 522 GVHGTvaqLGSVGERYATAIEvaagnRLNNVVVEDDAVAKEAIELlkrrkagratflplnKMRDERRDLSILSEDGVIGF 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 955 TVNMnIDTQEQLRNALESLKQHQETINTLKSkiSEEVSRNLHMEENTGETKDEfQQKMVGIDKKQDLEAKNTQTLTAdvk 1034
Cdd:TIGR02169 602 AVDL-VEFDPKYEPAFKYVFGDTLVVEDIEA--ARRLMGKYRMVTLEGELFEK-SGAMTGGSRAPRGGILFSRSEPA--- 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1035 dnEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1114
Cdd:TIGR02169 675 --ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1115 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEE--MSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENY 1192
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1193 EEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTK---EELKIAHIHLK----EHQETIDELRRSVSEKTAQI 1265
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKkerdELEAQLRELERKIEELEAQI 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1266 intQDLEKSHTKLQEEIPVLHEE-QELLPNVKEVSETQETMNELELLTE--QSTTKDSTTLARIEMerlRLNEKFQESQE 1342
Cdd:TIGR02169 913 ---EKKRKRLSELKAKLEALEEElSEIEDPKGEDEEIPEEELSLEDVQAelQRVEEEIRALEPVNM---LAIQEYEEVLK 986
|
810 820 830
....*....|....*....|....*....|...
gi 71061468 1343 EIKSLTKERDNLKTIKEALEVKHDQLKEHIRET 1375
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
828-1412 |
6.61e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 6.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 828 DFEQKYKMVLEENERMNQEIVNLskeaQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVE 907
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 908 REKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdtvnmnidtQEQLRNALESLKQHQETINTLKSKI 987
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE------------LEEKVKELKELKEKAEEYIKLSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 988 SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtadvkdnEIIEQQRKIFSLIQEKNELQQMLESVIAEKE 1067
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-------KKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1068 QLKTDLK-ENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEK--LKEKSQQLQEKQQQLL 1144
Cdd:PRK03918 376 RLKKRLTgLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1145 NVQEEMSEMQKKINEIENLKNELKNKELTLEhMETERLELAQKLNENYEEVKSITKERKV--LKELQKSFEtERDHLRGY 1222
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKynLEELEKKAE-EYEKLKEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1223 IREIEATGLQTKEELKIAHiHLKEHQETIDELRRSVSEKTAQIINT------QDLEKSHTKLQEEIPVLHEEQELLPNVK 1296
Cdd:PRK03918 534 LIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKEleelgfESVEELEERLKELEPFYNEYLELKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1297 EVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQE-SQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRET 1375
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEI 692
|
570 580 590
....*....|....*....|....*....|....*..
gi 71061468 1376 LAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPK 1412
Cdd:PRK03918 693 KKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1112-1707 |
1.14e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1112 EGELSRTCDRLAEVE----------EKLK---------------------------------EKSQQLQEKQQQLLNVQE 1148
Cdd:COG1196 178 ERKLEATEENLERLEdilgelerqlEPLErqaekaeryrelkeelkeleaellllklreleaELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1149 EMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1229 TGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIpvLHEEQELLPNVKEVSETQETMNEL 1308
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1309 ELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQ 1388
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1389 SLNMKEKDNETTKIVSEMEQfKPKDSALLRIEIEMLG------------LSKRLQESHDEMKSVAKEKDDL---QRLQEV 1453
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALL-LAGLRGLAGAVAVLIGveaayeaaleaaLAAALQNIVVEDDEVAAAAIEYlkaAKAGRA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1454 LQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEE 1533
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1534 QFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEiqimiKEKEEMKRVQEALQIERDQLKENT 1613
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE-----ERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1614 KEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLtqilhenLEEMRSVTKERDDLRS 1693
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLA-------IEEYEELEERYDFLSE 802
|
650
....*....|....
gi 71061468 1694 VEETLKVERDQLKE 1707
Cdd:COG1196 803 QREDLEEARETLEE 816
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1474-2068 |
1.29e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1474 ETEEELKVAhcclkeqEEtiNELRVN--LSEKETEISTIQKQLE------AINDKLQNKIQEIYEKEEQFNIKQISEVQE 1545
Cdd:COG1196 176 EAERKLEAT-------EE--NLERLEdiLGELERQLEPLERQAEkaeryrELKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1546 KVNELKqfkEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE----KEEMKRVQEALQIERDQLKENTKEIVAKMK 1621
Cdd:COG1196 247 ELEELE---AELEELEAELAELEAELEELRLELEELELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1622 ESQEKEYQFLKMTAVNETQEKmcEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE 1701
Cdd:COG1196 324 ELAELEEELEELEEELEELEE--ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1702 RDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRgivsEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHM 1781
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE----EALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1782 HLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLIT-----------------LKKDVNETQK 1844
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeaaleaalaaaLQNIVVEDDE 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1845 KVSEMEQLKKQIKDQSLT-LSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLkeslqetkardLEIQ 1923
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL-----------LGRT 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1924 QELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLK 2003
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 2004 KQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMIAR 2068
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1579-2120 |
1.86e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.60 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1579 QESQEEIQIMIKEKEEmKRVQEALQIERDQLKENTKEIvaKMKESQEKEYQFLKMTA---VNETQEKMCEIEHLKEQFET 1655
Cdd:PRK02224 186 RGSLDQLKAQIEEKEE-KDLHERLNGLESELAELDEEI--ERYEEQREQARETRDEAdevLEEHEERREELETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1656 QKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQE 1735
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1736 TIDKLRGIVsektneisnmqKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSN 1815
Cdd:PRK02224 343 EAESLREDA-----------DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1816 AKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSltlSKLEIENLNLAQKLHENLEEMKSVMKERDNLR 1895
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE---CGQPVEGSPHVETIEEDRERVEELEAELEDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1896 RVEETLKLERDQLkESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQEL 1975
Cdd:PRK02224 489 EEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1976 QKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAqnlsmqsvRMDNFQLTKKLHESLEEIrivaKERDELRRIKESLKMER 2055
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAA--------IADAEDEIERLREKREAL----AELNDERRERLAEKRER 635
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 2056 dqfIATLREMIARDRQNhQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRL 2120
Cdd:PRK02224 636 ---KRELEAEFDEARIE-EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
921-2057 |
2.11e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 67.00 E-value: 2.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 921 LEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNI--DTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME 998
Cdd:TIGR01612 499 LMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKAKLykEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 999 EntgETKDEFQQKMVGIDK-----KQDLEAKNTQTLTADvkDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDL 1073
Cdd:TIGR01612 579 K---EIKDLFDKYLEIDDEiiyinKLKLELKEKIKNISD--KNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKN 653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1074 KENIEMTIENQEELRLLGDELKKQQEIvaqeknHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1153
Cdd:TIGR01612 654 KDKIYSTIKSELSKIYEDDIDALYNEL------SSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNI 727
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1154 QKKINEIENLKNELK-------NKEL--TLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIR 1224
Cdd:TIGR01612 728 ENKKNELLDIIVEIKkhihgeiNKDLnkILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDE 807
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1225 EIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHtklQEEIPVLHEEQELLPNVKEVSETQET 1304
Cdd:TIGR01612 808 DAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNC---KEKIDSEHEQFAELTNKIKAEISDDK 884
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1305 MNELELLTEQSTTKDSTTLARIEMERLRLNeKFQESQEEIKSLTKERDNLKTIKEalevKHDQLKEHIRETLAKIQESQS 1384
Cdd:TIGR01612 885 LNDYEKKFNDSKSLINEINKSIEEEYQNIN-TLKKVDEYIKICENTKESIEKFHN----KQNILKEILNKNIDTIKESNL 959
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1385 KQEQSLN-----MKEKDNETTKIVSE--MEQFKPKDSALLRIEIEM---LGLSK------RLQESHDEMKSVAKEKDDLQ 1448
Cdd:TIGR01612 960 IEKSYKDkfdntLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLkanLGKNKenmlyhQFDEKEKATNDIEQKIEDAN 1039
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1449 R----LQEVLQSESDQLKENIKEIVAKHLET--EEELKVAHCCLKEQEETINELRV-NLSE--KETEIstiqKQLEAINd 1519
Cdd:TIGR01612 1040 KnipnIEIAIHTSIYNIIDEIEKEIGKNIELlnKEILEEAEINITNFNEIKEKLKHyNFDDfgKEENI----KYADEIN- 1114
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1520 KLQNKIQEIYEKEEQfNIKQISEVQEK----VNELK-QFKEHRKAKDSALQSIESKMLEltnrlqESQEEIQIMIKEK-- 1592
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDH-HIKALEEIKKKsenyIDEIKaQINDLEDVADKAISNDDPEEIE------KKIENIVTKIDKKkn 1187
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1593 --EEMKRV-QEALQIERDQlkeNTKEIVAKMKESQEKEYQFLKMTAVNETQEKMceiEHLKEQFETQKLNLENIETENIR 1669
Cdd:TIGR01612 1188 iyDEIKKLlNEIAEIEKDK---TSLEEVKGINLSYGKNLGKLFLEKIDEEKKKS---EHMIKAMEAYIEDLDEIKEKSPE 1261
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1670 LTQILHENLE---EMRSVTKERDDLRSVEETLKvERDQLKENLRET---ITRDLEKQEELKIVHMHLKEHQETIDKLRGI 1743
Cdd:TIGR01612 1262 IENEMGIEMDikaEMETFNISHDDDKDHHIISK-KHDENISDIREKslkIIEDFSEESDINDIKKELQKNLLDAQKHNSD 1340
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1744 VSEKTNEISNMQKDLEHSN-----DALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKlSNMQ-----KDLEN 1813
Cdd:TIGR01612 1341 INLYLNEIANIYNILKLNKikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEECK-SKIEstlddKDIDE 1419
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1814 SNAKLQEKIQELKANEHQLITLKKDVNETQKKVS------EMEQLKKQ--IKDQSLTLSKLEIENLNlaqKLHENLEEMK 1885
Cdd:TIGR01612 1420 CIKKIKELKNHILSEESNIDTYFKNADENNENVLllfkniEMADNKSQhiLKIKKDNATNDHDFNIN---ELKEHIDKSK 1496
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1886 SVMKERDNLRRVEETLKLERDQ----------------LKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISE 1949
Cdd:TIGR01612 1497 GCKDEADKNAKAIEKNKELFEQykkdvtellnkysalaIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKK 1576
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1950 KTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRM----DNFQLTK 2025
Cdd:TIGR01612 1577 EKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTELkengDNLNSLQ 1656
|
1210 1220 1230
....*....|....*....|....*....|....*.
gi 71061468 2026 KLHESLEE----IRIVAKERDELRRIKESLKMERDQ 2057
Cdd:TIGR01612 1657 EFLESLKDqkknIEDKKKELDELDSEIEKIEIDVDQ 1692
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1325-2051 |
2.21e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1325 RIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLnmKEKDNETTKIVS 1404
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLN--EERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1405 EMEQFKPKDSALLRIEIEMLGLSKRLQ-ESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAH 1483
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENkEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1484 CCLKEQEETINELRVNLSEKE--TEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKD 1561
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1562 SALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQE 1641
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1642 KMCEIehLKEQFETQKLNLENIETENIRLTQILHENLE---------------------EMRSVTKERDDLRSVEETLKV 1700
Cdd:pfam02463 488 LLLSR--QKLEERSQKESKARSGLKVLLALIKDGVGGRiisahgrlgdlgvavenykvaISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1701 ERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIvSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAH 1780
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQL-DKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1781 MHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENsNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQS 1860
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELTKELLE-IQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELL 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1861 LTLSKLEIENLNLaqklHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmLSKEHKETV 1940
Cdd:pfam02463 724 ADRVQEAQDKINE----ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE-EEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1941 DKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLL---RVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVR 2017
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALElkeEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750
....*....|....*....|....*....|....
gi 71061468 2018 MDNFQLTKKLHESLEEIRIVAKERDELRRIKESL 2051
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLL 912
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
726-1659 |
2.45e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 66.61 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 726 QKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKdKLFSEVVHKESRVQgllEEIGKTKDDL 805
Cdd:TIGR00606 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMEL-KYLKQYKEKACEIR---DQITSKEAQL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 806 ATTQSNYKSTDQEFQNFKTLhmdfeqkykmvLEENERMNQEIVNLSKEAQKFDSSlgalKTELSYKTQELQEKTREVQER 885
Cdd:TIGR00606 234 ESSREIVKSYENELDPLKNR-----------LKEIEHNLSKIMKLDNEIKALKSR----KKQMEKDNSELELKMEKVFQG 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 886 LNEmeQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDL--KQLQESLQIERDQLKSDIHDTVNMNIDTQ 963
Cdd:TIGR00606 299 TDE--QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELlvEQGRLQLQADRHQEHIRARDSLIQSLATR 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 964 EQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLtadvkDNEIIEQQR 1043
Cdd:TIGR00606 377 LELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI-----ELKKEILEK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1044 KIFSLIQEKNELQQMLESV--IAEKEQLKTDLKENIEMTIENQEELRLLGDE--LKKQQEIVAQEKNHAIKKEGELSRTC 1119
Cdd:TIGR00606 452 KQEELKFVIKELQQLEGSSdrILELDQELRKAERELSKAEKNSLTETLKKEVksLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1120 DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSIT 1199
Cdd:TIGR00606 532 TTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1200 KERKVLKELQKSFETerdhlrgyiREIEATGLQTkEELKIAhiHLKEHQETIDELRRSVSEKTAqiINTQDLEKSHTKLQ 1279
Cdd:TIGR00606 612 NELESKEEQLSSYED---------KLFDVCGSQD-EESDLE--RLKEEIEKSSKQRAMLAGATA--VYSQFITQLTDENQ 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1280 EEIPVLHEEQELLPNVKEVSETQETM--------NELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKER 1351
Cdd:TIGR00606 678 SCCPVCQRVFQTEAELQEFISDLQSKlrlapdklKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1352 DNLKTIKEALEVKHDQLKE-HIRETLAKIQESQSKQEQSLNMKEKDNEtTKIVSEMEQFKPKDSALLRIEiemlgLSKRL 1430
Cdd:TIGR00606 758 RDIQRLKNDIEEQETLLGTiMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQ-----VNQEK 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1431 QESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTI 1510
Cdd:TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1511 QKQLEAINDKLQNKIQEIYEKEEQFNIKQIsEVQEKVNELKQFKEHRK--------AKDSALQSIESKMLELTNRLQESQ 1582
Cdd:TIGR00606 912 SPLETFLEKDQQEKEELISSKETSNKKAQD-KVNDIKEKVKNIHGYMKdienkiqdGKDDYLKQKETELNTVNAQLEECE 990
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 1583 EEIQIMIKEKEEMKRVQEALQIERDQLKEN--TKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLN 1659
Cdd:TIGR00606 991 KHQEKINEDMRLMRQDIDTQKIQERWLQDNltLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1487-2264 |
4.25e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 4.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1487 KEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQE--KVNELKQFKEHRKAKDsAL 1564
Cdd:PTZ00121 1086 DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEarKAEDAKRVEIARKAED-AR 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1565 QSIESKMLELTNRLQESQEEIQImiKEKEEMKRVQEALQIERDQLKENTKEIV-AKMKESQEKEYQFLKMTAVNETQEKM 1643
Cdd:PTZ00121 1165 KAEEARKAEDAKKAEAARKAEEV--RKAEELRKAEDARKAEAARKAEEERKAEeARKAEDAKKAEAVKKAEEAKKDAEEA 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1644 CEIEHLKEQFETQKLNLENIETENIRLTQILHE---NLEEMRSVTKER--DDLRSVEETLKVERDQLKENLRETITRDLE 1718
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEearKADELKKAEEKKkaDEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1719 KQEELKIVHMHLKEHQETIDKLRGIvseKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLK--EQQETIDKLRGI 1796
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEA---AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKkaEEKKKADEAKKK 1399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1797 VSEKTDKLSNMQKdlensNAKLQEKIQELKANEHQlitlKKDVNETQKKVSE---MEQLKKQIKDqsltlsKLEIENLNL 1873
Cdd:PTZ00121 1400 AEEDKKKADELKK-----AAAAKKKADEAKKKAEE----KKKADEAKKKAEEakkADEAKKKAEE------AKKAEEAKK 1464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1874 AQKLHENLEEMKSVMKER---DNLRRVEETLKLERDQLKESLQETK-ARDLEIQQELKTARMLSK-EHKETVDKLREkiS 1948
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAkkaDEAKKKAEEAKKKADEAKKAAEAKKkADEAKKAEEAKKADEAKKaEEAKKADEAKK--A 1542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1949 EKTIQISDIQKDLDKSKDELQKKIQELQKKElqllrvkEDVNMSHKKINEMEQL-KKQFEAQNLSMQSVRMDNFQLTKKL 2027
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAE-------EDKNMALRKAEEAKKAeEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2028 HESLEEIRIVAKERDELRRIKESLKMERDQfiatlremiarDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRY 2107
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEE-----------KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2108 SEMDDHYECLNRLSLDLEKEIEFQKELSMRVKanlslpylqtkhieklfTANQRCSMEFHRIMKklkyvlsyVTKIKEEQ 2187
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKK-----------------KAEELKKAEEENKIK--------AEEAKKEA 1739
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 2188 HESINKFEMDFIDEVEKQKellikIQHLQQDCDVPSRELRDLKlnqnmDLHIEEILKDFSESEFPSIKTEFQQVLSN 2264
Cdd:PTZ00121 1740 EEDKKKAEEAKKDEEEKKK-----IAHLKKEEEKKAEEIRKEK-----EAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1763-1979 |
6.53e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 6.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1763 DALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNET 1842
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1843 QKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKER-DNLRRVEETLKLERDQLKESLQETKARDLE 1921
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1922 IQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDldksKDELQKKIQELQKKE 1979
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQE----AEELEALIARLEAEA 236
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1151-1951 |
6.71e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 6.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1151 SEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIeatg 1230
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKI---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1231 lqtKEELKIAHIHLKEHQETIDELRRSVSEKTAQIIntqDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELEL 1310
Cdd:TIGR04523 109 ---NSEIKNDKEQKNKLEVELNKLEKQKKENKKNID---KFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1311 LTEQSTTKDsttlarIEMERLRLNEKF---QESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQE 1387
Cdd:TIGR04523 183 LNIQKNIDK------IKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1388 QSLNMKEKDNEttkivsemeQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDdlqrlqevlQSESDQLKENIKE 1467
Cdd:TIGR04523 257 QLKDEQNKIKK---------QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE---------QDWNKELKSELKN 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1468 IVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQnkiqeiyekeeqfniKQISEVQEKV 1547
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIE---------------KLKKENQSYK 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1548 NELKQFKehrkakdSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKmKESQEKE 1627
Cdd:TIGR04523 384 QEIKNLE-------SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELI 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1628 YQFLKMTavnetqekmceIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE 1707
Cdd:TIGR04523 456 IKNLDNT-----------RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE 524
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1708 NLRETITRDLEKQEELKIVHMHLKEHQETIDK--LRGIVSEKTNEISnmqkDLEHSNDALKAQDLKIQEELriahmhlKE 1785
Cdd:TIGR04523 525 KIEKLESEKKEKESKISDLEDELNKDDFELKKenLEKEIDEKNKEIE----ELKQTQKSLKKKQEEKQELI-------DQ 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1786 QQETIDKLRGIVSEKTDKLSNMQKDLENSNAKlqekiqelkaNEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSK 1865
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKISSLEKELEKAKKE----------NEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1866 LEIENLNLAQKLHENLEEMKSVMKErDNLRRVEETLKLERDQLKESLQEtkaRDLEIQQELKTARMLSKEHKETVDKLRE 1945
Cdd:TIGR04523 664 IIKKIKESKTKIDDIIELMKDWLKE-LSLHYKKYITRMIRIKDLPKLEE---KYKEIEKELKKLDEFSKELENIIKNFNK 739
|
....*.
gi 71061468 1946 KISEKT 1951
Cdd:TIGR04523 740 KFDDAF 745
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1334-2212 |
1.12e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1334 NEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKD 1413
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1414 sallrieiEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETI 1493
Cdd:pfam02463 231 --------YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1494 NELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKdSALQSIESKMLE 1573
Cdd:pfam02463 303 LKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE-QLEEELLAKKKL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1574 LTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLkmtavnETQEKMCEIEHLKEQF 1653
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI------ELKQGKLTEEKEELEK 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1654 ETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEH 1733
Cdd:pfam02463 456 QELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLG 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1734 QETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLEN 1813
Cdd:pfam02463 536 VAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1814 SNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLhENLEEMKSVMKERDN 1893
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKAESELAKEEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1894 LRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQ 1973
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1974 ELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDEL--RRIKESL 2051
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEqkLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2052 KMERDQFIATLREMIARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQ 2131
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2132 KELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEFhrimKKLKYVLSYVTKIKEEQHESINKFEMDFIDEVEKQKELLIK 2211
Cdd:pfam02463 935 EEPEELLLEEADEKEKEENNKEEEEERNKRLLLAK----EELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
.
gi 71061468 2212 I 2212
Cdd:pfam02463 1011 I 1011
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
963-1628 |
1.24e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.22 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 963 QEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQ 1042
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1043 RKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEniemtIENQEELRllgdELKKQQEIVAQEKNHAIKKEGELSRTCDRL 1122
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAV-----LEETQERI----NRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1123 AEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQK-----KINEIENLKNELKNKELTLEHMETERL-ELAQKLNENYEEVK 1196
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsqeIHIRDAHEVATSIREISCQQHTLTQHIhTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1197 SITKERKVLKELQKSFETE---RDHLRGYIREIEATGLQTKEELKIAHIHL-KEHQETI------DELRRSVSEKTAQII 1266
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRtsaFRDLQGQLAHAKKQQELQQRYAELCAAAItCTAQCEKlekihlQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1267 NTQDLEKSHTK----------LQEEIPVLHEEQELLPNVKEV-----------------------SETQETMNELELLTE 1313
Cdd:TIGR00618 477 TKEQIHLQETRkkavvlarllELQEEPCPLCGSCIHPNPARQdidnpgpltrrmqrgeqtyaqleTSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1314 QsTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMK 1393
Cdd:TIGR00618 557 Q-RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1394 EKDNETTKIVSEMEQF-------KPKDSALLRIEIEMLGLSKR---LQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKE 1463
Cdd:TIGR00618 636 QCSQELALKLTALHALqltltqeRVREHALSIRVLPKELLASRqlaLQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1464 NIKEIVakhlETEEELKVAHCCLKEQEETINELRVNLSE------KETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI 1537
Cdd:TIGR00618 716 YDREFN----EIENASSSLGSDLAAREDALNQSLKELMHqartvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1538 KQISEVQEKVNELKQfkEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIV 1617
Cdd:TIGR00618 792 RLREEDTHLLKTLEA--EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
730
....*....|.
gi 71061468 1618 AKMKESQEKEY 1628
Cdd:TIGR00618 870 KIIQLSDKLNG 880
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
873-1989 |
1.84e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 63.66 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEevktLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETE----LCAEAEEMRARLAARKQELEEILHEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 953 HDTVNMNIDTQEQLRNALESLKQHqetINTLKSKISEE--VSRNLHMEENTGETK-DEFQQKMVGIDKKQDLEAKNTQTL 1029
Cdd:pfam01576 81 ESRLEEEEERSQQLQNEKKKMQQH---IQDLEEQLDEEeaARQKLQLEKVTTEAKiKKLEEDILLLEDQNSKLSKERKLL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1030 TADVKD--NEIIEQQRKIFSLIQEKNELQQM---LESVIAEKEQLKTDLKENIEMTIENQEELRllgDELKKQQEIVAQE 1104
Cdd:pfam01576 158 EERISEftSNLAEEEEKAKSLSKLKNKHEAMisdLEERLKKEEKGRQELEKAKRKLEGESTDLQ---EQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1105 KNHAIKKEGELSRTCDRLAEveeklkeksqqlqeKQQQLLNVQEEMSEMQKKINEienLKNELKNKELTLEHMETERLEL 1184
Cdd:pfam01576 235 RAQLAKKEEELQAALARLEE--------------ETAQKNNALKKIRELEAQISE---LQEDLESERAARNKAEKQRRDL 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1185 AQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKEELKIAHIH-LKEHQETIDELRRsvsekta 1263
Cdd:pfam01576 298 GEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQaLEELTEQLEQAKR------- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1264 qiiNTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSttlariEMERLRLNEKFQESQEE 1343
Cdd:pfam01576 371 ---NKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSES------ERQRAELAEKLSKLQSE 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1344 IKSLTKERDNL--KTIKEALEVkhDQLKEHIRETLAKIQEsQSKQEQSLNMKEKDNETTKiVSEMEQFKPKDSALLRIEI 1421
Cdd:pfam01576 442 LESVSSLLNEAegKNIKLSKDV--SSLESQLQDTQELLQE-ETRQKLNLSTRLRQLEDER-NSLQEQLEEEEEAKRNVER 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1422 EMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvahcclKEQEEtINELRVNLS 1501
Cdd:pfam01576 518 QLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKN------RLQQE-LDDLLVDLD 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1502 EKETEISTIQKQleaindklQNKIQEIYEKEeqfniKQISevqekvnelKQFKEHRKAKDSALQSIESKMLELTNRLQES 1581
Cdd:pfam01576 591 HQRQLVSNLEKK--------QKKFDQMLAEE-----KAIS---------ARYAEERDRAEAEAREKETRALSLARALEEA 648
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1582 QEEiqimikeKEEMKRVQEALQIERDQLKeNTKEIVAKMKESQEKEYQFLKmTAVNETQEKMCEIEHLKEQFETQKLNLE 1661
Cdd:pfam01576 649 LEA-------KEELERTNKQLRAEMEDLV-SSKDDVGKNVHELERSKRALE-QQVEEMKTQLEELEDELQATEDAKLRLE 719
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1662 -------------------NIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEE 1722
Cdd:pfam01576 720 vnmqalkaqferdlqardeQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQ 799
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1723 LKIVHMHLKEHQETIDKLRgivsEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTD 1802
Cdd:pfam01576 800 LKKLQAQMKDLQRELEEAR----ASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGAS 875
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1803 KLSNMQKD---LENSNAKLQEKIQELKANEHQLitlkkdvNETQKK-VSEMEQLKKQIKDQSLTLSKLEienlNLAQKLH 1878
Cdd:pfam01576 876 GKSALQDEkrrLEARIAQLEEELEEEQSNTELL-------NDRLRKsTLQVEQLTTELAAERSTSQKSE----SARQQLE 944
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1879 ENLEEMKSVMKERDNLrrveetlklERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQ 1958
Cdd:pfam01576 945 RQNKELKAKLQEMEGT---------VKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDER 1015
|
1130 1140 1150
....*....|....*....|....*....|.
gi 71061468 1959 KDLDKSKDELQKKIQELQKKELQLLRVKEDV 1989
Cdd:pfam01576 1016 RHADQYKDQAEKGNSRMKQLKRQLEEAEEEA 1046
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1335-1974 |
2.15e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 2.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1335 EKFQESQEEIKSLTKerdNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQslnmkeKDNETTKIVSEMEQFKPKDS 1414
Cdd:TIGR04523 68 EKINNSNNKIKILEQ---QIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQ------KNKLEVELNKLEKQKKENKK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1415 ALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETIN 1494
Cdd:TIGR04523 139 NIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN----LKKKIQKNK 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1495 ELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFN------IKQISEVQEKVNELKQFKEHRKAKDSALQSIE 1568
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNqlkdeqNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1569 SKMLELTNrlqesQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEI-----VAKMKESQEKEYQFLKMTAVNETQEKM 1643
Cdd:TIGR04523 295 SEISDLNN-----QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIsqlneQISQLKKELTNSESENSEKQRELEEKQ 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1644 CEIEHLKEQFETQKLNLENIETENIRLTQILHENLE-------EMRSVTKERDDLRSVEETLKVERDQLKENLRETITRD 1716
Cdd:TIGR04523 370 NEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1717 LEKQEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSN---DALKAQDLKIQEELRIAHMHLKEQQETIDKL 1793
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEkelKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1794 RGIVSEKTDKLSNMQKDLENSNAKL---------QEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQsltLS 1864
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDDFELkkenlekeiDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKE---IE 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1865 KLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETV---- 1940
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMkdwl 686
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1941 ----------------DKLREKISEKTIQISDIQKDLDKSKD-------ELQKKIQE 1974
Cdd:TIGR04523 687 kelslhykkyitrmirIKDLPKLEEKYKEIEKELKKLDEFSKeleniikNFNKKFDD 743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1424-1627 |
2.52e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.09 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1424 LGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEK 1503
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1504 ETEISTIQKQLEAINDKLQNKIQEIYEKEEQ------FNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNR 1577
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1578 LQESQEEIQIMIKEKEEMKRVQEALQIERDQ-LKENTKEIVAKMKESQEKE 1627
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQ 219
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1426-2001 |
3.29e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 62.61 E-value: 3.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1426 LSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKET 1505
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE----LSSLEDMKNRYESEIKTAES 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1506 EISTIQKQLEAINDkLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELtnrlqesqEEI 1585
Cdd:PRK01156 264 DLSMELEKNNYYKE-LEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKL--------SVL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1586 QIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKEsqekeyqflkmtavnetqekmceIEHLKEQFETQKLNLENIET 1665
Cdd:PRK01156 335 QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS-----------------------IESLKKKIEEYSKNIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1666 ENIRLTQILHENLEEMRSVTKE----RDDLRSVEETLKVERDQLKENLREtITRD---LEKQEELKIVHMHLKEhqetiD 1738
Cdd:PRK01156 392 FISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDE-LSRNmemLNGQSVCPVCGTTLGE-----E 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1739 KLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIqeelriahmhlKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKL 1818
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKI-----------VDLKKRKEYLESEEINKSINEYNKIESARADLEDI 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1819 QEKIQELKANEHQLITLKKDVNETqkKVSEMEQLKKQIKDQSLTLSKLEIENL------------NLAQKLHENLEEMKS 1886
Cdd:PRK01156 535 KIKINELKDKHDKYEEIKNRYKSL--KLEDLDSKRTSWLNALAVISLIDIETNrsrsneikkqlnDLESRLQEIEIGFPD 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1887 VMKERDN-LRRVEETLKLERDQLKEsLQETKARDLEIQQELKTARMLSKEHKETVDKLrekiSEKTIQISDIQKDLDKSK 1965
Cdd:PRK01156 613 DKSYIDKsIREIENEANNLNNKYNE-IQENKILIEKLRGKIDNYKKQIAEIDSIIPDL----KEITSRINDIEDNLKKSR 687
|
570 580 590
....*....|....*....|....*....|....*.
gi 71061468 1966 DELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQ 2001
Cdd:PRK01156 688 KALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
515-1213 |
3.47e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.83 E-value: 3.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 515 EQLRTEKEEMELKLKEKNDLDEFEALERKTK------KDQEMQLihEISNLKNLVKHAEVYNQDLENELSSKVELLRE-- 586
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSvidlqtKLQEMQM--ERDAMADIRRRESQSQEDLRNQLQNTVHELEAak 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 587 --KEDQIKKLQEYIDSQKleniKMDLSYslESIEdpKQMKQTLFDAETVALDAKRE-----SAFLRSENLELKEKMKELA 659
Cdd:pfam15921 159 clKEDMLEDSNTQIEQLR----KMMLSH--EGVL--QEIRSILVDFEEASGKKIYEhdsmsTMHFRSLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 660 TTYKQMENDIQLYQSQLEA-KKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELnkEVEENEA 738
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEAlKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL--EIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 739 LREEVILLSELKSLPSEVERLRKEI-------QDKSEELHI-----------ITSEKDKLFSEVVHKESRVQGLLEEIGK 800
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELreakrmyEDKIEELEKqlvlanselteARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 801 TKDDLA-TTQSNYKSTDQEFQNFKTLhmdfeqkykmvleenERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKT 879
Cdd:pfam15921 389 REKELSlEKEQNKRLWDRDTGNSITI---------------DHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 880 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSdihdTVNMN 959
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS----RVDLK 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 960 IDTQEQLRNALESLKQHQETINTLKSKISE----------EVSRNLHMEENTGETKDEFQQKMVGIDKK---QDLEAKNT 1026
Cdd:pfam15921 530 LQELQHLKNEGDHLRNVQTECEALKLQMAEkdkvieilrqQIENMTQLVGQHGRTAGAMQVEKAQLEKEindRRLELQEF 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1027 QTLTaDVKDNEIIEQQRKIFSLIQEK-------NELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQE 1099
Cdd:pfam15921 610 KILK-DKKDAKIRELEARVSDLELEKvklvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1100 IVAQEKNhaiKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN----EIENLKNELKNKELTLE 1175
Cdd:pfam15921 689 EMETTTN---KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDalqsKIQFLEEAMTNANKEKH 765
|
730 740 750
....*....|....*....|....*....|....*...
gi 71061468 1176 HMETERLELAQKLNENYEEVKSITKERKVLKELQKSFE 1213
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
650-1757 |
3.92e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 62.76 E-value: 3.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 650 ELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKltsLIDGKVPKDLLcNLELEGKITDLQK-- 727
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLE---IDDEIIYINKL-KLELKEKIKNISDkn 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 728 -------ELNKEVEENEALREEVILLSELKsLPSEVERLRKEIQD-KSEELHIITSEKDKLFSEVvhkESRVQGLLEEIG 799
Cdd:TIGR01612 617 eyikkaiDLKKIIENNNAYIDELAKISPYQ-VPEHLKNKDKIYSTiKSELSKIYEDDIDALYNEL---SSIVKENAIDNT 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 800 KTKDDLATTQSNYKSTDQEFQNFKT----LHM-DFEQKYKMVLEENERMNQEIVN-LSKEAQKFDSSLGALKTELSYKTQ 873
Cdd:TIGR01612 693 EDKAKLDDLKSKIDKEYDKIQNMETatveLHLsNIENKKNELLDIIVEIKKHIHGeINKDLNKILEDFKNKEKELSNKIN 772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 874 ELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKtliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIH 953
Cdd:TIGR01612 773 DYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDA---KQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVD 849
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 954 DTVNMNIDTQEQLRNALESLKqhqETINTLKSKISEEVSRNlhMEENTGETKDEFQQKMVGIDKkqdlEAKNTQTLTadv 1033
Cdd:TIGR01612 850 KFINFENNCKEKIDSEHEQFA---ELTNKIKAEISDDKLND--YEKKFNDSKSLINEINKSIEE----EYQNINTLK--- 917
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1034 KDNEIIEQQRKIFSLIQEKNELQQMLESVIaeKEQLKTDLKEN-IEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKE 1112
Cdd:TIGR01612 918 KVDEYIKICENTKESIEKFHNKQNILKEIL--NKNIDTIKESNlIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKN 995
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1113 GELSRTCDRLAEVEEKLKEKSQQLQ--EKQQQLLNVQEEMSEMQKKINEIE--------NLKNELKNK-ELTLEHMETER 1181
Cdd:TIGR01612 996 NELIKYFNDLKANLGKNKENMLYHQfdEKEKATNDIEQKIEDANKNIPNIEiaihtsiyNIIDEIEKEiGKNIELLNKEI 1075
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1182 LELAQKLNENYEEVKSITKE---RKVLKELQKSFETERDHLRGYIREIEATGLQTKEEL----KIAHIHLKEHQETIDEL 1254
Cdd:TIGR01612 1076 LEEAEINITNFNEIKEKLKHynfDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALeeikKKSENYIDEIKAQINDL 1155
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1255 RRsVSEKTAQIINTQDLEKSH----TKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLT-EQSTTKDSTTLARIEME 1329
Cdd:TIGR01612 1156 ED-VADKAISNDDPEEIEKKIenivTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINlSYGKNLGKLFLEKIDEE 1234
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1330 R------LRLNEKFQESQEEIKSLTKERDNLKTIK-------EALEVKHDQLKEH-------------IRETLAKIQESQ 1383
Cdd:TIGR01612 1235 KkksehmIKAMEAYIEDLDEIKEKSPEIENEMGIEmdikaemETFNISHDDDKDHhiiskkhdenisdIREKSLKIIEDF 1314
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1384 SKQEQSLNMKEKDN----ETTKIVSEMEQFKPKDSALLRIeiemLGLSKrLQESHDEMKSVAKEKDDLQRLQEVLQSESD 1459
Cdd:TIGR01612 1315 SEESDINDIKKELQknllDAQKHNSDINLYLNEIANIYNI----LKLNK-IKKIIDEVKEYTKEIEENNKNIKDELDKSE 1389
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1460 QLKENIKE-IVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKL----------QNKIQEI 1528
Cdd:TIGR01612 1390 KLIKKIKDdINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVlllfkniemaDNKSQHI 1469
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1529 YEKEEQ-------FNIKQISEVQEKVNELKQ---------------FKEHRKAKDSALQSIESkmLELTNRLQESQEEIQ 1586
Cdd:TIGR01612 1470 LKIKKDnatndhdFNINELKEHIDKSKGCKDeadknakaieknkelFEQYKKDVTELLNKYSA--LAIKNKFAKTKKDSE 1547
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1587 IMIKEKEEMKRvQEALQIERDQlkentkeivAKMKESQEKEYQFLKMTAVNETQEK-MCEIEHLKEQFETQKLNLENI-- 1663
Cdd:TIGR01612 1548 IIIKEIKDAHK-KFILEAEKSE---------QKIKEIKKEKFRIEDDAAKNDKSNKaAIDIQLSLENFENKFLKISDIkk 1617
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1664 -------ETENIRlTQILHENLEEMRSVTKER-DDLRSVEETLKVERDQlKENLRETITRDLEKQEELKIVHMHLKEHQE 1735
Cdd:TIGR01612 1618 kindclkETESIE-KKISSFSIDSQDTELKENgDNLNSLQEFLESLKDQ-KKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
|
1210 1220
....*....|....*....|..
gi 71061468 1736 TIDKlrGIVsEKTNEISNMQKD 1757
Cdd:TIGR01612 1696 NYEI--GII-EKIKEIAIANKE 1714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1777-2135 |
4.68e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 4.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1777 RIAHMHLKEQQETIDKLRGIvsektdklsnmqKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEmEQLKKqI 1856
Cdd:TIGR02169 146 DFISMSPVERRKIIDEIAGV------------AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKA-E 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1857 KDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRveetlklERDQLKESLQETKARDLEIQQELKT-ARMLSKE 1935
Cdd:TIGR02169 212 RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEElNKKIKDL 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1936 HKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQS 2015
Cdd:TIGR02169 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2016 VRMDNFQ----LTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMIARDRQNHQ----VKPEKRLLSDGQQ 2087
Cdd:TIGR02169 365 ELEDLRAeleeVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAaiagIEAKINELEEEKE 444
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 71061468 2088 HLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEI-EFQKELS 2135
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELsKLQRELA 493
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
873-1387 |
6.67e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 6.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 953 HDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDleakntqtlTAD 1032
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE---------EIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1033 VKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEnIEMTIENQEElrllgdELKKQQEIVAQEKNHAIKKE 1112
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARE------RVEEAEALLEAGKCPECGQP 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1113 GELSRTCDRLAEVEEKLKEksqqlqeKQQQLLNVQEEMSEMQKKINEIEnlknELKNKELTLEHMEtERLELAQKLNENY 1192
Cdd:PRK02224 461 VEGSPHVETIEEDRERVEE-------LEAELEDLEEEVEEVEERLERAE----DLVEAEDRIERLE-ERREDLEELIAER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1193 EEvkSITKERKVLKELQKSFEterdhlrgyirEIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLE 1272
Cdd:PRK02224 529 RE--TIEEKRERAEELRERAA-----------ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1273 KSHTKLQEEIPVLHEEQELLPNVKEVS-ETQETMNEL-ELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKE 1350
Cdd:PRK02224 596 TLLAAIADAEDEIERLREKREALAELNdERRERLAEKrERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
490 500 510
....*....|....*....|....*....|....*..
gi 71061468 1351 RDNLKTIKEALEVKHDQLKEhIRETLAKIQESQSKQE 1387
Cdd:PRK02224 676 RDDLQAEIGAVENELEELEE-LRERREALENRVEALE 711
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1783-1981 |
1.11e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.84 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1783 LKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSE-MEQLKKQIKD--- 1858
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErREELGERARAlyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1859 QSLTLSKLEIenLNLAQKLHENLEEMKSVMKERDNLRRVEETLKlerdQLKESLQETKARDLEIQQELKTARMLSKEHKE 1938
Cdd:COG3883 98 SGGSVSYLDV--LLGSESFSDFLDRLSALSKIADADADLLEELK----ADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 71061468 1939 TVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQ 1981
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
546-895 |
1.59e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 546 KDQEMQLIHEISNLKNLVKHAEVYNQDLENELSskvelLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDPKQMKQ 625
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIG-----EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 626 TLfDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEnDIQLYQSQLEAKKKmqvDLEKELQSAFNEITKLTSLID 705
Cdd:TIGR02169 762 EL-EARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS-KLEEEVSRIEARLR---EIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 706 GKVPKdllcNLELEGKITDLQKE---LNKEVEENEALREEviLLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFS 782
Cdd:TIGR02169 837 ELQEQ----RIDLKEQIKSIEKEienLNGKKEELEEELEE--LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 783 EVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNfktlHMDFEQKYKMVLEENERMNQ-EIVNLsKEAQKFDSSL 861
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE----ELSLEDVQAELQRVEEEIRAlEPVNM-LAIQEYEEVL 985
|
330 340 350
....*....|....*....|....*....|....
gi 71061468 862 GALKtELSYKTQELQEKTREVQERLNEMEQLKEQ 895
Cdd:TIGR02169 986 KRLD-ELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
695-1204 |
2.07e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 2.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 695 NEITKLTSLIDGKVPKDLLCNL-ELEGKITDLQKELnKEVEEN-----EALREEVILLSELKSLPSEVERLRKEIQDKSE 768
Cdd:PRK02224 187 GSLDQLKAQIEEKEEKDLHERLnGLESELAELDEEI-ERYEEQreqarETRDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 769 ELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLH-------MDFEQKYKMVLEENE 841
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDeelrdrlEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 842 RMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTL 921
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 922 EEVKTLTQekdDLKQLQESLQIERDQLK-------------SDIHDTVNMNIDTQEQLRNALESLKQHQET----INTLK 984
Cdd:PRK02224 426 EREAELEA---TLRTARERVEEAEALLEagkcpecgqpvegSPHVETIEEDRERVEELEAELEDLEEEVEEveerLERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 985 S--KISEEVSRNLHMEENTGE-------TKDEFQQKMVGIDK-KQDLEAK-NTQTLTADVKDNEIIEQQRKIFSLIQEKN 1053
Cdd:PRK02224 503 DlvEAEDRIERLEERREDLEEliaerreTIEEKRERAEELRErAAELEAEaEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1054 ELQQMLESV--IAEKEQLKTDLKENIEMTIENQEELRLLGDE----LKKQQEIVAQ-----EKNHAIKKEGELSRTCDRL 1122
Cdd:PRK02224 583 ELKERIESLerIRTLLAAIADAEDEIERLREKREALAELNDErrerLAEKRERKREleaefDEARIEEAREDKERAEEYL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1123 AEVEEKLKEKsqqlqekQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLElAQKLNENYEEVKSITKER 1202
Cdd:PRK02224 663 EQVEEKLDEL-------REERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDE-AEELESMYGDLRAELRQR 734
|
..
gi 71061468 1203 KV 1204
Cdd:PRK02224 735 NV 736
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
519-1421 |
3.06e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 519 TEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEV--YNQDLENELSSKVELLREKED--QIKKL 594
Cdd:PTZ00121 1090 DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDArkAEEARKAEDAKRVEIARKAEDarKAEEA 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 595 QEYIDSQKLEN----IKMDLSYSLESIEDPKQMKQTL-FDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMEndi 669
Cdd:PTZ00121 1170 RKAEDAKKAEAarkaEEVRKAEELRKAEDARKAEAARkAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE--- 1246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 670 qlyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQK-ELNKEVEENEALREEVILLSE 748
Cdd:PTZ00121 1247 -------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKaEEKKKADEAKKKAEEAKKADE 1319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 749 LKSLPSEVERLRKEIQDKSEElhiitsekDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMD 828
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEE--------AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 829 FEQKYKMVLEENERMNQEIVNLSKEAQKFDSSlgALKTELSYKTQELQEKTREvQERLNEMEQLKEQLENRDSTLQTVER 908
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 909 EKTliTEKLQQTLEEVKtltqEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKIS 988
Cdd:PTZ00121 1469 AKK--ADEAKKKAEEAK----KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 989 EEVSRNLHMEENTGETKDEFQQKMVgiDKKQDLEAKNTQTLTAD----VKDNEIIEQQRKIFSLIQEKNELQQMLESVIA 1064
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEeakkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1065 EKEQLKT--DLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQ 1142
Cdd:PTZ00121 1621 KAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1143 LLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLnenyEEVKSITKERKVLKELQKSFETERDHLRGY 1222
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA----EEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1223 IREIEATGLQTKeelkiahihlkehqetiDELRRSVSEKTaqiinTQDLEKSHTKLQE----EIPVLHEEQELlpnvkEV 1298
Cdd:PTZ00121 1777 KEAVIEEELDEE-----------------DEKRRMEVDKK-----IKDIFDNFANIIEggkeGNLVINDSKEM-----ED 1829
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1299 SETQETMNELELLTEQSTTkdsttlarIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEalEVKHDQLKEHIRETLAK 1378
Cdd:PTZ00121 1830 SAIKEVADSKNMQLEEADA--------FEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEE--EIEEADEIEKIDKDDIE 1899
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 71061468 1379 IQESQSkqeqslNMKEKDNETTKIVSEMEQFKPKDSALLRIEI 1421
Cdd:PTZ00121 1900 REIPNN------NMAGKNNDIIDDKLDKDEYIKRDAEETREEI 1936
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
559-1190 |
3.19e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.26 E-value: 3.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 559 LKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEY------------------------------IDSQKLENIKM 608
Cdd:TIGR04523 24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNlnkdeekinnsnnkikileqqikdlndklkKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 609 DLSYSLESIEDPKQMKQTLfdaetvaldaKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEK 688
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKL----------EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 689 ELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSE 768
Cdd:TIGR04523 174 ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 769 ELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQN--FKTLHMDFEQKYKMVLEEN------ 840
Cdd:TIGR04523 254 QLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQnqisqn 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 841 ----ERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEK 916
Cdd:TIGR04523 334 nkiiSQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 917 LQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHD---TVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSR 993
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkelIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 994 NLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADV--KDNEIIEQQRKIFSLIQEKNELQqmLESVIAEKEQLKT 1071
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKkeKESKISDLEDELNKDDFELKKEN--LEKEIDEKNKEIE 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1072 DLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRtcdRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMS 1151
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEK---ELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
650 660 670
....*....|....*....|....*....|....*....
gi 71061468 1152 EMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNE 1190
Cdd:TIGR04523 649 QIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLK 687
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
577-1074 |
7.03e-08 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 58.55 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 577 LSSKVELLREKEDQIKKLQEYIDSQKLENIK---------MDLSYSLESIEDPKQMKQTLfDAETVALDAKRESAFLRSE 647
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKKLRETeevefslkaEVLIQKFGRSLKAKKRFSLL-KKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 648 NLELKEKMKELATTYKQMENDIQLYqsqLEAKKKMQVDLEKELQSAFNEITKLTSLIDG---KVPKDL-LCNLELEGKIT 723
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELESEI---IELKKSLSSDLIENLEFKTELIARLKKLLNNidlEEGPSIeYVKLPELNKLH 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 724 DLQKELNKEVEE-NEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKlfsevvhkesrvqglLEEIGKTK 802
Cdd:COG5022 961 EVESKLKETSEEyEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ---------------LKELPVEV 1025
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 803 DDLATTQSNYKSTDQEFQNFKTLHmdfEQKYKMVLEENE-RMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTRE 881
Cdd:COG5022 1026 AELQSASKIISSESTELSILKPLQ---KLKGLLLLENNQlQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 882 VQERLNEMEqlkeqlENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQ--LKSDIHDTVNMN 959
Cdd:COG5022 1103 VTNRNLVKP------ANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEanLEALPSPPPFAA 1176
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 960 IDTQEQLRNALESLKQH--QETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNtqtltaDVKDNE 1037
Cdd:COG5022 1177 LSEKRLYQSALYDEKSKlsSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFN------NLNKKF 1250
|
490 500 510
....*....|....*....|....*....|....*..
gi 71061468 1038 IIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLK 1074
Cdd:COG5022 1251 DTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATIN 1287
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
638-1669 |
1.00e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.13 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 638 KRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQvDLEKELQSAFNEITKLTSLIDGKVPKD--LLCN 715
Cdd:TIGR00606 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQ-EHQMELKYLKQYKEKACEIRDQITSKEaqLESS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 716 LELEGKITDLQKELNKEVEENEALREEVILLSE----LKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESR- 790
Cdd:TIGR00606 237 REIVKSYENELDPLKNRLKEIEHNLSKIMKLDNeikaLKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVRe 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 791 -------VQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENErMNQEIVNLSKEA---QKFDSS 860
Cdd:TIGR00606 317 kerelvdCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA-TRLELDGFERGPfseRQIKNF 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 861 LGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQE-----KDDLK 935
Cdd:TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQlegssDRILE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 936 QLQESLQIERDQLKSDIHDTVnmnidtqEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMVGI 1015
Cdd:TIGR00606 476 LDQELRKAERELSKAEKNSLT-------ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1016 DKKQDLEAKNTQTLTADVKDneiieqqrkifslIQEKNELQQMLESVIAEKEQLKtdlkeniemtienqEELRLLGDELK 1095
Cdd:TIGR00606 549 EQIRKIKSRHSDELTSLLGY-------------FPNKKQLEDWLHSKSKEINQTR--------------DRLAKLNKELA 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1096 KQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNvQEEMSEMQKKINEIENLKNELKNKELTLE 1175
Cdd:TIGR00606 602 SLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKS-SKQRAMLAGATAVYSQFITQLTDENQSCC 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1176 HMETERLELAQKLNENYEEVKSITK----ERKVLKELQKSFETERDHLRGYIrEIEATGLQTKEElkiahiHLKEHQETI 1251
Cdd:TIGR00606 681 PVCQRVFQTEAELQEFISDLQSKLRlapdKLKSTESELKKKEKRRDEMLGLA-PGRQSIIDLKEK------EIPELRNKL 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1252 DELRRSVSEKtaqiinTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTK-DSTTLARIEMEr 1330
Cdd:TIGR00606 754 QKVNRDIQRL------KNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKlQGSDLDRTVQQ- 826
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1331 lrLNEKFQESQEEIKSLTKERDNLKTIKE-------ALEVKHDQLKEHIRETLAKIQESQSKQEQSLnmkEKDNETTKIV 1403
Cdd:TIGR00606 827 --VNQEKQEKQHELDTVVSKIELNRKLIQdqqeqiqHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV---ELSTEVQSLI 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1404 SEMEQFKPKDSALLRIeiemlgLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKvah 1483
Cdd:TIGR00606 902 REIKDAKEQDSPLETF------LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL--- 972
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1484 cclKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQ-NKIQEIYEKEEQFNIKQISEVQEKVNELKQF-KEHRKAKD 1561
Cdd:TIGR00606 973 ---KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDtQKIQERWLQDNLTLRKRENELKEVEEELKQHlKEMGQMQV 1049
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1562 SALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERD--QLKENTKEIVAKMKESQE------KEYQFLKM 1633
Cdd:TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQfrDAEEKYREMMIVMRTTELvnkdldIYYKTLDQ 1129
|
1050 1060 1070
....*....|....*....|....*....|....*.
gi 71061468 1634 TAVNETQEKMCEIEHLKEQFETQKLNLENIETENIR 1669
Cdd:TIGR00606 1130 AIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIR 1165
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1539-2066 |
1.13e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1539 QISEVQEKVNELKQFkeHRKAKDSALQSIeskmLELTNRLQESQEEIQIMIKEKEEMKRVQEALqieRDQLKENTKEIVA 1618
Cdd:pfam15921 86 QVKDLQRRLNESNEL--HEKQKFYLRQSV----IDLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1619 K--MKESQEKEYQflkmTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLtqilHENLEEMR------SVTKERDD 1690
Cdd:pfam15921 157 AkcLKEDMLEDSN----TQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYE----HDSMSTMHfrslgsAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1691 LRSVEETLKVERDQLKENLRETitrdleKQEELKIVHMHLKEHQETIDKLrgiVSEKTNEISNmqkdLEHSNDALKAQDL 1770
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEAL------KSESQNKIELLLQQHQDRIEQL---ISEHEVEITG----LTEKASSARSQAN 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1771 KIQEELRIAHMHLKEQQETIDKLrgiVSEKTDKLSNMQKDLENSNAKLQEKIQELkanEHQLITLKKDVNETQKKVSEME 1850
Cdd:pfam15921 296 SIQSQLEIIQEQARNQNSMYMRQ---LSDLESTVSQLRSELREAKRMYEDKIEEL---EKQLVLANSELTEARTERDQFS 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1851 QLKKQIKDQsltLSKLEIEnlnlaqkLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQEtkaRDLEIQQELKTAR 1930
Cdd:pfam15921 370 QESGNLDDQ---LQKLLAD-------LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD---RNMEVQRLEALLK 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1931 MLSKEHKETVDKLREKI---SEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEqlkKQFE 2007
Cdd:pfam15921 437 AMKSECQGQMERQMAAIqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKE---RAIE 513
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 2008 AQNLSMQSVRmdnfqltKKLHESLEEIRIVAKERDELRRIK---ESLKM---ERDQFIATLREMI 2066
Cdd:pfam15921 514 ATNAEITKLR-------SRVDLKLQELQHLKNEGDHLRNVQtecEALKLqmaEKDKVIEILRQQI 571
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1705-2051 |
1.38e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1705 LKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRgIVSEKTNEISNMQKDLEHSNDALKAQDLK-IQEELRIAHMHL 1783
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLE-RQAEKAERYKELKAELRELELALLVLRLEeLREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1784 KEQQETIDKLRGIVSEKTDKLSnmqkDLENSNAKLQEKIQELKANEHQLITLKKDVNET-QKKVSEMEQLKKQIKDQSLT 1862
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLE----ELRLEVSELEEEIEELQKELYALANEISRLEQQkQILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1863 LSKLEIENLNLAQKLHENLEEMKSVMKERDNLRrveetlkLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDK 1942
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLE-------AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1943 LREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDvnmshKKINEMEQLKKQFEAQNLSMQSVRMDNFQ 2022
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE-----ELEEELEELQEELERLEEALEELREELEE 472
|
330 340
....*....|....*....|....*....
gi 71061468 2023 LTKKLHESLEEIRIVAKERDELRRIKESL 2051
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1159-1769 |
1.84e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1159 EIENLKNELKNKELTLEHMET--ERLELAQKLNENYEEVKSITKERKVLKELQKSF-----ETERDHLRGYIREIEATGL 1231
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDarEQIELLEPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1232 QTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINT-----QDLEKSHTKLQE------------EIPVLHEEQELLPN 1294
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlereiERLERELEERERrrarleallaalGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1295 VKEVSETQETMNELELLTEQsttkdstTLARIEMERLRLNEKFQESQEEIKSLTKERDNL--------KTIKEALEVKHD 1366
Cdd:COG4913 386 RAEAAALLEALEEELEALEE-------ALAEAEAALRDLRRELRELEAEIASLERRKSNIparllalrDALAEALGLDEA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1367 QLK---EHIretlakiqesqskqeqslNMKEKDNE-------------TTKIVSEmEQFKpkdsALLRIeIEMLGLSKRL 1430
Cdd:COG4913 459 ELPfvgELI------------------EVRPEEERwrgaiervlggfaLTLLVPP-EHYA----AALRW-VNRLHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1431 --QESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHL-----ETEEELK----------------VAHCC-- 1485
Cdd:COG4913 515 vyERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFdyvcvDSPEELRrhpraitragqvkgngTRHEKdd 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1486 ---LKEQ-------EETINELRVNLSEKETEISTIQKQLEAINDKLQN--KIQEIYEK--EEQFNIKQISEVQEKVNELK 1551
Cdd:COG4913 595 rrrIRSRyvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDAlqERREALQRlaEYSWDEIDVASAEREIAELE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1552 QFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAkmKESQEKEYQFL 1631
Cdd:COG4913 675 AELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1632 KMTAVNETQEKMCEI-EHLKEQFETQKLNLENIETeniRLTQILHENLEEMRSVTKE-RDDLRSVEETLKvERDQLKENl 1709
Cdd:COG4913 753 ERFAAALGDAVERELrENLEERIDALRARLNRAEE---ELERAMRAFNREWPAETADlDADLESLPEYLA-LLDRLEED- 827
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1710 retitrDL-EKQEELKivhmHLKeHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQD 1769
Cdd:COG4913 828 ------GLpEYEERFK----ELL-NENSIEFVADLLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
844-1381 |
1.85e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.95 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 844 NQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEE 923
Cdd:TIGR04523 74 NNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 924 VKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRN---ALESLKQHQETINTLKSKISEEVSRNLHMEEN 1000
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKlelLLSNLKKKIQKNKSLESQISELKKQNNQLKDN 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1001 TGETKDEFQQKMVGIDKKQD-----LEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQ-LKTDLK 1074
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTqlnqlKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdWNKELK 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1075 ENIEmtiENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT-----------CDRLAEVEEKLKEKSQQLQEKQQQL 1143
Cdd:TIGR04523 314 SELK---NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSesensekqrelEEKQNEIEKLKKENQSYKQEIKNLE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1144 LNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYI 1223
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1224 REIEATGLQTKEELKIAHIHLKEHQETIDELrrsvsektaqIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQE 1303
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKL----------NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1304 TMNELELLTEQSTTKDSttlaRIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQE 1381
Cdd:TIGR04523 541 SDLEDELNKDDFELKKE----NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISS 614
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1437-1905 |
1.95e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1437 MKSVAKEKDDLQRLQ----EVLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQK 1512
Cdd:COG4717 48 LERLEKEADELFKPQgrkpELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1513 QLEAIND-----KLQNKIQEIYEKEEQF--NIKQISEVQEKVNELKQfkEHRKAKDSALQSIESKMLELTNRLQESQEEI 1585
Cdd:COG4717 124 LLQLLPLyqeleALEAELAELPERLEELeeRLEELRELEEELEELEA--ELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1586 QIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEyQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIET 1665
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE-RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1666 ENIRLTQILHENLEEMRSV-TKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIv 1744
Cdd:COG4717 281 LVLGLLALLFLLLAREKASlGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL- 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1745 sEKTNEISNMQKDLEHSNDALKAQDLkiqEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQK-----DLENSNAKLQ 1819
Cdd:COG4717 360 -EEELQLEELEQEIAALLAEAGVEDE---EELRAALEQAEEYQELKEELEELEEQLEELLGELEEllealDEEELEEELE 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1820 EKIQELKANEHQLITLKKDVNETQKKVSEMEqlkkqikdQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEE 1899
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLE--------EDGELAELLQELEELKAELRELAEEWAALKLALELLEEARE 507
|
....*.
gi 71061468 1900 TLKLER 1905
Cdd:COG4717 508 EYREER 513
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1287-1973 |
2.03e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.90 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1287 EEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHD 1366
Cdd:TIGR00618 164 EKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1367 QLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQ--FKPKDSALLRIEIEMLGLSKRLQESHDEMKS-VAKE 1443
Cdd:TIGR00618 244 YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERinRARKAAPLAAHIKAVTQIEQQAQRIHTELQSkMRSR 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1444 KDDLQRLQEVLQSESDQlkENIKEIVAKHLETEEELKVAHcclkEQEETINELRVNLSEKETEISTIQKQLEAINDKLQN 1523
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSI--EEQRRLLQTLHSQEIHIRDAH----EVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1524 KIQEI-YEKEEQFNI------------------KQISEVQEKVNELKQFKEHR----KAKDSALQSIESKMLELTNRLQE 1580
Cdd:TIGR00618 398 LCKELdILQREQATIdtrtsafrdlqgqlahakKQQELQQRYAELCAAAITCTaqceKLEKIHLQESAQSLKEREQQLQT 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1581 SQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEH--------LKEQ 1652
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEdvyhqltsERKQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1653 FETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKE-------------NLRETITRDLEK 1719
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACeqhallrklqpeqDLQDVRLHLQQC 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1720 QEELKIVHMHLKEHQETIDKLRgiVSEKTNEISNMQKDLEHSNDAL-------KAQDLKIQEELRIAHMHLKEQQETIDK 1792
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQER--VREHALSIRVLPKELLASRQLAlqkmqseKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1793 LRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELkanEHQLITLKKDVNETQKKVSEMEQLKKQIKDQsltLSKLEIENLN 1872
Cdd:TIGR00618 716 YDREFNEIENASSSLGSDLAAREDALNQSLKEL---MHQARTVLKARTEAHFNNNEEVTAALQTGAE---LSHLAAEIQF 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1873 LAQKLHENLEEMKSVMKE-RDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETvdklREKISEKT 1951
Cdd:TIGR00618 790 FNRLREEDTHLLKTLEAEiGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEEC----SKQLAQLT 865
|
730 740
....*....|....*....|..
gi 71061468 1952 IQISDIQKDLDKSKDELQKKIQ 1973
Cdd:TIGR00618 866 QEQAKIIQLSDKLNGINQIKIQ 887
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
494-925 |
2.16e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 494 ENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALERktkkdqemQLIHEISNLKNLVKHAEVYNQD 572
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISAlRKDLARLEAEVE--------QLEERIAQLSKELTELEAEIEE 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 573 LENELSSKVELLREKEDQIKKLQEYIDsqklenikmdlsyslesiedpkqmkqtlfdaetvalDAKRESAFLRSENLELK 652
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIE------------------------------------QLKEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQsafneitkltslidgkvpkdllcnlELEGKITDLQKELNKE 732
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE-------------------------ELSEDIESLAAEIEEL 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 733 VEENEALREEVILLSELK-SLPSEVERLRKEIQDKSEELHIItsekdklfsevvhkESRVQGLLEEIGKTKDDLATTQSN 811
Cdd:TIGR02168 865 EELIEELESELEALLNERaSLEEALALLRSELEELSEELREL--------------ESKRSELRRELEELREKLAQLELR 930
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 812 YKSTDQEFQNFKTlhmDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQ 891
Cdd:TIGR02168 931 LEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTA 1007
|
410 420 430
....*....|....*....|....*....|....*
gi 71061468 892 LKEQL-ENRDSTLQTVEREKTLITEKLQQTLEEVK 925
Cdd:TIGR02168 1008 QKEDLtEAKETLEEAIEEIDREARERFKDTFDQVN 1042
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1461-1723 |
2.35e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 56.47 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1461 LKENIKEIVAK-HleteeELKVAHCCLKEQEETINELRvNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQ 1539
Cdd:PRK05771 14 LKSYKDEVLEAlH-----ELGVVHIEDLKEELSNERLR-KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1540 ISEVQEKVNElkqfkehrkakdsalqsIESKMLELTNRLQESQEEIQIMIKEKEEMKRVqEALQIERDQLK--ENTKEIV 1617
Cdd:PRK05771 88 IKDVEEELEK-----------------IEKEIKELEEEISELENEIKELEQEIERLEPW-GNFDLDLSLLLgfKYVSVFV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1618 AKMKESQEKEYQ----FLKMTAVNETQEKM-----CEIEHLKEQFET-QKLNLENIETENIR-LTQILHENLEEMRSVTK 1686
Cdd:PRK05771 150 GTVPEDKLEELKlesdVENVEYISTDKGYVyvvvvVLKELSDEVEEElKKLGFERLELEEEGtPSELIREIKEELEEIEK 229
|
250 260 270
....*....|....*....|....*....|....*..
gi 71061468 1687 ERDDLRSVEETLKVERDQLKENLRETITRDLEKQEEL 1723
Cdd:PRK05771 230 ERESLLEELKELAKKYLEELLALYEYLEIELERAEAL 266
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1508-1982 |
2.47e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1508 STIQKQLEAI-NDKLQNKIQEIY---EKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMleltNRLQESQE 1583
Cdd:COG4717 37 STLLAFIRAMlLERLEKEADELFkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL----EELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1584 EIQIMIKEKEEMKRVQEALQiERDQLKENTKEIVAKMKESQEKeyqflkmtaVNETQEKMCEIEHLKEQFETQKLNLENI 1663
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEER---------LEELRELEEELEELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1664 etenirLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLretitRDLEKQEELKIVHMHLKEHQETIDKLRGI 1743
Cdd:COG4717 183 ------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL-----EELEEELEQLENELEAAALEERLKEARLL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1744 VSektneISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQ 1823
Cdd:COG4717 252 LL-----IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLA 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1824 ELKANE----HQLITLKKDVNETQKKVSEMEQLKKQIKDQSLtlsKLEIENLnLAQKLHENLEEMKSVMKERDNLRRVEE 1899
Cdd:COG4717 327 ALGLPPdlspEELLELLDRIEELQELLREAEELEEELQLEEL---EQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKE 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1900 TLKLERDQLKESLQETKAR-----DLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDldkskDELQKKIQE 1974
Cdd:COG4717 403 ELEELEEQLEELLGELEELlealdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED-----GELAELLQE 477
|
....*...
gi 71061468 1975 LQKKELQL 1982
Cdd:COG4717 478 LEELKAEL 485
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1014-1616 |
2.79e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.45 E-value: 2.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1014 GIDKKQDLEAKNTQTLTADVKDNEIIEQQ--------------RKIFSLIQEKNELQQ----------MLESVIAEKEQL 1069
Cdd:PRK01156 109 GFDDTTKYIEKNILGISKDVFLNSIFVGQgemdslisgdpaqrKKILDEILEINSLERnydklkdvidMLRAEISNIDYL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1070 KTDLK------ENIEMTIENQEE-LRLLGDELKKQQE---IVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:PRK01156 189 EEKLKssnlelENIKKQIADDEKsHSITLKEIERLSIeynNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1140 QQQLLNVQEEMSEMQK-----------KINEIENLKNELKNKELTLEHMETE---------RLELAQKLNENYEEVKS-- 1197
Cdd:PRK01156 269 LEKNNYYKELEERHMKiindpvyknrnYINDYFKYKNDIENKKQILSNIDAEinkyhaiikKLSVLQKDYNDYIKKKSry 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1198 --ITKERKVLKE-------LQKSFETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVsektaqiint 1268
Cdd:PRK01156 349 ddLNNQILELEGyemdynsYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKL---------- 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1269 QDLEKSHTKLQEEIPVLHEEQEllpnvkEVSETQETMNELELL----TEQSTTKDSTTLARIEMERLRLNEKFQESQEEI 1344
Cdd:PRK01156 419 QDISSKVSSLNQRIRALRENLD------ELSRNMEMLNGQSVCpvcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEV 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1345 KSLTKERDNLKTIKEALEvkhdqlKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALlrieieML 1424
Cdd:PRK01156 493 KDIDEKIVDLKKRKEYLE------SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSL------KL 560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1425 GLSKRLQESHDEMKSVAKEKDdlqrlQEVLQSESDQLKENIKEIvakhleteeelkvahcclkeqEETINELRVNLSEKE 1504
Cdd:PRK01156 561 EDLDSKRTSWLNALAVISLID-----IETNRSRSNEIKKQLNDL---------------------ESRLQEIEIGFPDDK 614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1505 TEISTIQKQLEAINDKLQNKIQEIYEKEeqfniKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEE 1584
Cdd:PRK01156 615 SYIDKSIREIENEANNLNNKYNEIQENK-----ILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKA 689
|
650 660 670
....*....|....*....|....*....|..
gi 71061468 1585 IQIMIKEKEEMKRVQEALQIERDQLKENTKEI 1616
Cdd:PRK01156 690 LDDAKANRARLESTIEILRTRINELSDRINDI 721
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1149-2007 |
2.85e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.59 E-value: 2.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1149 EMSEMQKKINEIENLKNELKnkelTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:TIGR00606 167 EGKALKQKFDEIFSATRYIK----ALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKS 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1229 TGLQTKEelkiahihLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEeqellpnvKEVSETQETMNEL 1308
Cdd:TIGR00606 243 YENELDP--------LKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKME--------KVFQGTDEQLNDL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1309 ELLTEQSTTKDSTTLARIEMERLRLNEKFQEsqeeiksLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEq 1388
Cdd:TIGR00606 307 YHNHQRTVREKERELVDCQRELEKLNKERRL-------LNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1389 sLNMKEKDnettkivsemeqfkpkdsALLRIEIE-MLGLSKRLQEshDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKE 1467
Cdd:TIGR00606 379 -LDGFERG------------------PFSERQIKnFHTLVIERQE--DEAKTAAQLCADLQSKERLKQEQADEIRDEKKG 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1468 IvAKHLETEEELkvahcclkeQEETINELRVNLSEKEteistiqkQLEAINDKLQNKIQEIYEKEEQFN-IKQISEVQEK 1546
Cdd:TIGR00606 438 L-GRTIELKKEI---------LEKKQEELKFVIKELQ--------QLEGSSDRILELDQELRKAERELSkAEKNSLTETL 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1547 VNELKQFKEHRKAKDSALQSIESKMLELtNRLQESQEEIQIMIKEKeeMKRVQEALQIERDQLKENTKEIVAKMKESQEK 1626
Cdd:TIGR00606 500 KKEVKSLQNEKADLDRKLRKLDQEMEQL-NHHTTTRTQMEMLTKDK--MDKDEQIRKIKSRHSDELTSLLGYFPNKKQLE 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1627 EYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQL- 1705
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRa 656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1706 ----KENLRETITRDLEKQEE-----LKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEEL 1776
Cdd:TIGR00606 657 mlagATAVYSQFITQLTDENQsccpvCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQ 736
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1777 RIAHMHLKEQQETIDKLRGIVSEktdkLSNMQKDLENSNAKLQEKIQELKANEhqliTLKKDVNETQKKVSEMEQLKKQI 1856
Cdd:TIGR00606 737 SIIDLKEKEIPELRNKLQKVNRD----IQRLKNDIEEQETLLGTIMPEEESAK----VCLTDVTIMERFQMELKDVERKI 808
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1857 KDQSLTL--SKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSK 1934
Cdd:TIGR00606 809 AQQAAKLqgSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEE 888
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71061468 1935 EHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFE 2007
Cdd:TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1223-1858 |
3.14e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.06 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1223 IREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQ 1302
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMD--DYNNLK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1303 ETMNELELLTEqsttkdsttlariemERLRLNEKFQESQEEIKSLTKERDNLKTIKEalevkhdqlkEHIRETLAKIQES 1382
Cdd:PRK01156 239 SALNELSSLED---------------MKNRYESEIKTAESDLSMELEKNNYYKELEE----------RHMKIINDPVYKN 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1383 QSKQEQSLNMKEKDNETTKIVSEMeqfkpkDSALLRIEIEMLGLSKrLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK 1462
Cdd:PRK01156 294 RNYINDYFKYKNDIENKKQILSNI------DAEINKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1463 ENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDK---LQNKIQEIYEKEEQfnIKQ 1539
Cdd:PRK01156 367 SYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKvssLNQRIRALRENLDE--LSR 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1540 ISEVQEKVNELKQFKEHrkAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALqiERDQLKENTKEIVAK 1619
Cdd:PRK01156 445 NMEMLNGQSVCPVCGTT--LGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKR--KEYLESEEINKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1620 MKESQEKEYQFLK-MTAVNETQEKMCEIEHLKEQFETQKlnlenietenirltqilhenLEEMRSVTKERDDLRSVEETL 1698
Cdd:PRK01156 521 YNKIESARADLEDiKIKINELKDKHDKYEEIKNRYKSLK--------------------LEDLDSKRTSWLNALAVISLI 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1699 KVERDQLKENLRETITRDLEKQEelkivhmhlkehQETIDKLRGIVSEKTNEISNMQKDLEHSNDALK-AQDLKIQ-EEL 1776
Cdd:PRK01156 581 DIETNRSRSNEIKKQLNDLESRL------------QEIEIGFPDDKSYIDKSIREIENEANNLNNKYNeIQENKILiEKL 648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1777 RIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSE-------M 1849
Cdd:PRK01156 649 RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDinetlesM 728
|
....*....
gi 71061468 1850 EQLKKQIKD 1858
Cdd:PRK01156 729 KKIKKAIGD 737
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1521-1914 |
3.35e-07 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 55.67 E-value: 3.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1521 LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQE 1600
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1601 ALQIERDQLKENTKEIVAKMKESQEKeyqflKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEE 1680
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEED-----IKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1681 MRSVTKERDDLRSVEEtlkvERDQLKENLRETITRdleKQEELKIVHMHLKEHQETIDKLRGivsekTNEISNMQkdlEH 1760
Cdd:pfam07888 187 LRSLSKEFQELRNSLA----QRDTQVLQLQDTITT---LTQKLTTAHRKEAENEALLEELRS-----LQERLNAS---ER 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1761 SNDALKaqdlkiqEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANehqlitLKKDVN 1840
Cdd:pfam07888 252 KVEGLG-------EELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQS------AEADKD 318
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 1841 ETQKKVSEMEQLKKQIKDQSLTLSKLEIEnlnLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQE 1914
Cdd:pfam07888 319 RIEKLSAELQRLEERLQEERMEREKLEVE---LGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQE 389
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1297-1959 |
3.72e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.00 E-value: 3.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1297 EVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIksltkerdnlktikEALEVKHDQLKEHIRETL 1376
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSEL--------------EALEDQHGAFLDADIETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1377 AKIQESQSKQEQSLNMKEKDNE--TTKIVSEMEQFKPKDSAL-LRIEIEMLGLSKRLQESHDEM-KSVAKEKDDLQRLQE 1452
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKalTGKHQDVTAKYNRRRSKIkEQNNRDIAGIKDKLAKIREARdRQLAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1453 VLQSESDQLKENIKEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINdklqnkiqeiyeke 1532
Cdd:pfam12128 423 ELREQLEAGKLEFNEEEYRLKSRLGELKL----RLNQATATPELLLQLENFDERIERAREEQEAAN-------------- 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1533 eqfnikqiSEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEE--------IQIMIKE----KEEMKRVQE 1600
Cdd:pfam12128 485 --------AEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHFLRKEapdwEQSIGKVIS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1601 ALQIERDQL-----------KENTKEIVAKMKESQEKEYQFL------KMTAVNET-QEKMCEIEHLKEQFETQKLNLEN 1662
Cdd:pfam12128 557 PELLHRTDLdpevwdgsvggELNLYGVKLDLKRIDVPEWAASeeelreRLDKAEEAlQSAREKQAAAEEQLVQANGELEK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1663 IETENIRLTQILHENLEEMRSVTKERDDL-RSVEETLKVERDQLKENLretitRDLEKQEELkivhmHLKEHQETIDKLR 1741
Cdd:pfam12128 637 ASREETFARTALKNARLDLRRLFDEKQSEkDKKNKALAERKDSANERL-----NSLEAQLKQ-----LDKKHQAWLEEQK 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1742 GIVSEKTNEISNMQKDLEHSNDA----LKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAK 1817
Cdd:pfam12128 707 EQKREARTEKQAYWQVVEGALDAqlalLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIER 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1818 LQEKIQELKA-----NEHQLI---TLKKDVNETQKKVSEME-QLKKQIKDQSLTLSKLEIE---NLNLAQKLHENLEEMK 1885
Cdd:pfam12128 787 IAVRRQEVLRyfdwyQETWLQrrpRLATQLSNIERAISELQqQLARLIADTKLRRAKLEMErkaSEKQQVRLSENLRGLR 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1886 SVM------KERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHK-----ETVDKLREK---ISEKT 1951
Cdd:pfam12128 867 CEMsklatlKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSgsglaETWESLREEdhyQNDKG 946
|
....*...
gi 71061468 1952 IQISDIQK 1959
Cdd:pfam12128 947 IRLLDYRK 954
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
480-973 |
4.39e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 4.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 480 SEIEWNPATKLLNQEN-IESELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALERktkkdqemqlihEIS 557
Cdd:PRK02224 194 AQIEEKEEKDLHERLNgLESELAELDEEIERYEEQREQARETRDEADEVLEEhEERREELETLEA------------EIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 558 NLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQ-----EYIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAET 632
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 633 VALDAKRESAF-LRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkD 711
Cdd:PRK02224 342 EEAESLREDADdLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLE-----E 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 712 LLCNL-ELEGKITDLQ---KELNKEVEENEALREE---------------VILLSE----LKSLPSEVERLRKEIQDKSE 768
Cdd:PRK02224 417 LREERdELREREAELEatlRTARERVEEAEALLEAgkcpecgqpvegsphVETIEEdrerVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 769 ELHIITSEKdKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIV 848
Cdd:PRK02224 497 RLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 849 NLSKEAQKFDSSLGALKT----------------ELSYKTQELQEKTREVQERLNEMEQLKEQLENR--DSTLQTVEREK 910
Cdd:PRK02224 576 ELNSKLAELKERIESLERirtllaaiadaedeieRLREKREALAELNDERRERLAEKRERKRELEAEfdEARIEEAREDK 655
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 911 TLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS--DIHDTVNMNIDTQEQLRNALESL 973
Cdd:PRK02224 656 ERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrERREALENRVEALEALYDEAEEL 720
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
507-1239 |
5.40e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 5.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 507 YDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLRE 586
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 587 KEDQIKKLQEyIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQME 666
Cdd:pfam02463 308 RKVDDEEKLK-ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 667 ndiqlyQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILL 746
Cdd:pfam02463 387 ------SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 747 SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEfqnfKTLH 826
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG----DLGV 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 827 MDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTV 906
Cdd:pfam02463 537 AVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 907 EREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETIN----- 981
Cdd:pfam02463 617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKeeilr 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 982 TLKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLES 1061
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1062 VIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKS------QQ 1135
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLeklaeeEL 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1136 LQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETE 1215
Cdd:pfam02463 857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE 936
|
730 740
....*....|....*....|....
gi 71061468 1216 RDHLRGYIREIEATGLQTKEELKI 1239
Cdd:pfam02463 937 PEELLLEEADEKEKEENNKEEEEE 960
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1730-2573 |
5.67e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 5.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1730 LKEHQETIDKLRGIVSEKTNEISNMQKDLEHsndALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDklsnmqk 1809
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREK---AERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS------- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1810 dLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLT---------LSKLEIENLNLAQKLHEN 1880
Cdd:TIGR02169 249 -LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslersIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1881 LEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKD 1960
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1961 LDKSKDELQKKIQELQKKELQLLRVKEDVNmshKKINEMEQLKKQFEAQNLSMQSVRMDnfqltkklhesleeiriVAKE 2040
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKIN---ELEEEKEDKALEIKKQEWKLEQLAAD-----------------LSKY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2041 RDELRRIKESLKMERDQFIATLREMIARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECL--N 2118
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAagN 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2119 RLS-------LDLEKEIEFQKELSMRVKANLSLPYLQTKHIEKLFTANQRCsmefhrimkkLKYVLSYVTKikEEQHESI 2191
Cdd:TIGR02169 548 RLNnvvveddAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGV----------IGFAVDLVEF--DPKYEPA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2192 NKFEMD---FIDEVEKQKELLIKIQHLQQDCDV---------PSRELRDLKLNQnmdlhieeilkdfsesefPSIKTEFQ 2259
Cdd:TIGR02169 616 FKYVFGdtlVVEDIEAARRLMGKYRMVTLEGELfeksgamtgGSRAPRGGILFS------------------RSEPAELQ 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2260 QVLSNRKEMtqfleewlntrfdiEKLKNGIQKENDRIcqvnnffNNRIIAIMNESTEFEERSATISKEWEQdlksLKEKN 2339
Cdd:TIGR02169 678 RLRERLEGL--------------KRELSSLQSELRRI-------ENRLDELSQELSDASRKIGEIEKEIEQ----LEQEE 732
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2340 EKLFKNYQTLKTSLASgAQVNPTTQDNKNPHVTSRATQLTtEKIRELENSLHEAKesAMHKESKIIKMQKELEVTNDIIA 2419
Cdd:TIGR02169 733 EKLKERLEELEEDLSS-LEQEIENVKSELKELEARIEELE-EDLHKLEEALNDLE--ARLSHSRIPEIQAELSKLEEEVS 808
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2420 KLQAKVHESNKCLEKTKETIQVLQDkvalgakpykeEIEDLKMKLVKIDLEKmknaKEFEKEISATKATVEYQKEVIRLL 2499
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEK-----------EIQELQEQRIDLKEQI----KSIEKEIENLNGKKEELEEELEEL 873
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 2500 RENLRRsqqaqdtsvisehtdpqpsnkpltcgggsgivqntkaliLKSEHIRLEKEISKLKQQNEQLIKQKNEL 2573
Cdd:TIGR02169 874 EAALRD---------------------------------------LESRLGDLKKERDELEAQLRELERKIEEL 908
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1665-2061 |
7.33e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1665 TENIRLTQILHenLEEMRSVTKERDDLRSVEetlKVERDQLKENlRETITRDLEKQEELKIVHmhlKEHQETIDKLRGIV 1744
Cdd:pfam17380 266 TENEFLNQLLH--IVQHQKAVSERQQQEKFE---KMEQERLRQE-KEEKAREVERRRKLEEAE---KARQAEMDRQAAIY 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1745 SEKTNEISNMQKDLEhsndalkaqdlKIQEELRIAHMHLKEQQETIDKLrgivsEKTDKLSNMQKDLENSNAKLQekiQE 1824
Cdd:pfam17380 337 AEQERMAMERERELE-----------RIRQEERKRELERIRQEEIAMEI-----SRMRELERLQMERQQKNERVR---QE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1825 LKANEHQLITLKKDVNETQKKVSEMEQLKKQIKdqsltlskleienlNLAQKLHENLEEMKSVMKERDNLRRVEETLKLE 1904
Cdd:pfam17380 398 LEAARKVKILEEERQRKIQQQKVEMEQIRAEQE--------------EARQREVRRLEEERAREMERVRLEEQERQQQVE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1905 RdqLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKelqllR 1984
Cdd:pfam17380 464 R--LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR-----R 536
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1985 VKEDVNMSHKKINEMEQLKKQFeaqnlsmqsvrmdnfqltKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIAT 2061
Cdd:pfam17380 537 EAEEERRKQQEMEERRRIQEQM------------------RKATEERSRLEAMEREREMMRQIVESEKARAEYEATT 595
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1278-1926 |
9.03e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 54.44 E-value: 9.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1278 LQEEIPVLHEEQELLP-NVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKT 1356
Cdd:pfam10174 58 LKEQYRVTQEENQHLQlTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1357 IKEALEVKHDQLKEHIRETLAKIQE----SQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQE 1432
Cdd:pfam10174 138 TLEEMELRIETQKQTLGARDESIKKllemLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1433 SHDEMKSVAKEK-------------DDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVN 1499
Cdd:pfam10174 218 RNQLQPDPAKTKalqtviemkdtkiSSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1500 LSEKETEISTIQKQLEAINDklqnkiqeiyekeEQFNIKQISEVqekvnelkqFKEHRKAKDSALQSIESKMLELTNRLQ 1579
Cdd:pfam10174 298 LSKKESELLALQTKLETLTN-------------QNSDCKQHIEV---------LKESLTAKEQRAAILQTEVDALRLRLE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1580 ESQeeiQIMIKEKEEMKRVQEAlqierdqlKENTKEIVAKMKESQEkeyqfLKMTAVNETQEKmceIEHLKEQFETQKLN 1659
Cdd:pfam10174 356 EKE---SFLNKKTKQLQDLTEE--------KSTLAGEIRDLKDMLD-----VKERKINVLQKK---IENLQEQLRDKDKQ 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1660 LENietenirltqiLHENLEEMRSVTKERDD-LRSVEETLKvERDQLKENLRETITR-DLEKQEELKIVHMHLKEHQETI 1737
Cdd:pfam10174 417 LAG-----------LKERVKSLQTDSSNTDTaLTTLEEALS-EKERIIERLKEQREReDRERLEELESLKKENKDLKEKV 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1738 DKLRGIVSEKTNEISnmqkDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRG---------IVSEKTDKLSNMQ 1808
Cdd:pfam10174 485 SALQPELTEKESSLI----DLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENqlkkahnaeEAVRTNPEINDRI 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1809 KDLENSNAKLQEKIQELKANEHQLITLKKDV----NETQKKVSEMEQLK-KQIKDQSLTLSKLeieNLNLAQKLHENLEE 1883
Cdd:pfam10174 561 RLLEQEVARYKEESGKAQAEVERLLGILREVenekNDKDKKIAELESLTlRQMKEQNKKVANI---KHGQQEMKKKGAQL 637
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 71061468 1884 MKSVMKERDNLRRVEETLKLER-----DQLKESLQETKARDLEIQQEL 1926
Cdd:pfam10174 638 LEEARRREDNLADNSQQLQLEElmgalEKTRQELDATKARLSSTQQSL 685
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1690-1911 |
9.26e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.25 E-value: 9.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1690 DLRSVEETLKVERDQLKENLRETITRDLEK---QEELKIVHMHLKE-----------HQETIDKLR-------GIVSEKT 1748
Cdd:PHA02562 161 DISVLSEMDKLNKDKIRELNQQIQTLDMKIdhiQQQIKTYNKNIEEqrkkngeniarKQNKYDELVeeaktikAEIEELT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1749 NEISNMQKDLEHSNDALK-----AQDLKIQEEL--RIAHMHLKEQQ-----ETIDKLRGIVSEKTDKLSNMQKDLEnsna 1816
Cdd:PHA02562 241 DELLNLVMDIEDPSAALNklntaAAKIKSKIEQfqKVIKMYEKGGVcptctQQISEGPDRITKIKDKLKELQHSLE---- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1817 KLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQ----LKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERD 1892
Cdd:PHA02562 317 KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKS 396
|
250
....*....|....*....
gi 71061468 1893 NLRRVEETLKLERDQLKES 1911
Cdd:PHA02562 397 ELVKEKYHRGIVTDLLKDS 415
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1429-2567 |
9.71e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.06 E-value: 9.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1429 RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQlkeNIKEIVAKhlETEEELKVAHCCLKEQEETINELRVNLSEKETEIS 1508
Cdd:TIGR01612 501 RMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQ---NIKAKLYK--EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSI 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1509 TIQKQLEAINDKLQNKIQEIYE--------KEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESkmLELTNRLQe 1580
Cdd:TIGR01612 576 HLEKEIKDLFDKYLEIDDEIIYinklklelKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISP--YQVPEHLK- 652
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1581 SQEEIQIMIKekeemkrvQEALQIERDQLKENTKEIVAKMKESQEKEYQflKMTAVNETQEKMCEIEHLKEQFETQ--KL 1658
Cdd:TIGR01612 653 NKDKIYSTIK--------SELSKIYEDDIDALYNELSSIVKENAIDNTE--DKAKLDDLKSKIDKEYDKIQNMETAtvEL 722
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1659 NLENIETENIRLTQIL-----HENLEEMRSVTKERDDLRSVEETLKV-------ERDQL----------KENLRETITRD 1716
Cdd:TIGR01612 723 HLSNIENKKNELLDIIveikkHIHGEINKDLNKILEDFKNKEKELSNkindyakEKDELnkykskiseiKNHYNDQINID 802
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1717 LEKQEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEqqeTIDKLRGI 1796
Cdd:TIGR01612 803 NIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAE---LTNKIKAE 879
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1797 VSEktDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKK-----DVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENL 1871
Cdd:TIGR01612 880 ISD--DKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKvdeyiKICENTKESIEKFHNKQNILKEILNKNIDTIKES 957
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1872 NLAQKLHENLEEmKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSK---EHKETVDKLREKIS 1948
Cdd:TIGR01612 958 NLIEKSYKDKFD-NTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHqfdEKEKATNDIEQKIE 1036
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1949 EKTIQISDIQKDLDKSKDELQKKIQELQKKELQLL--RVKEDVNMSHKKINEMEQLKKQFEAQNLsmqsVRMDNFQLTKK 2026
Cdd:TIGR01612 1037 DANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLnkEILEEAEINITNFNEIKEKLKHYNFDDF----GKEENIKYADE 1112
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2027 LHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMIARDRQnhqvKPEKRLLSDGQQHLTESLREKCSRIKELLKR 2106
Cdd:TIGR01612 1113 INKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLED----VADKAISNDDPEEIEKKIENIVTKIDKKKNI 1188
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2107 YSEMDDHYECLNRLSLDlEKEIEFQKELSMRVKANLSLPYLQTKHIEKLFTANQRCSMEfhRIMKKLKYVLSYVTKIKEE 2186
Cdd:TIGR01612 1189 YDEIKKLLNEIAEIEKD-KTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAME--AYIEDLDEIKEKSPEIENE 1265
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2187 QH-ESINKFEMDF--IDEVEKQKELLIKIQHLQQDCDVPSRELRdlklnqnmdlhieeILKDFS-ESEFPSIKTEFQQVL 2262
Cdd:TIGR01612 1266 MGiEMDIKAEMETfnISHDDDKDHHIISKKHDENISDIREKSLK--------------IIEDFSeESDINDIKKELQKNL 1331
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2263 SNRKEMTQFLEEWLNtrfdieklkngiqkendricQVNNFFN----NRIIAIMNESTEFEERSatisKEWEQDLKSLKEK 2338
Cdd:TIGR01612 1332 LDAQKHNSDINLYLN--------------------EIANIYNilklNKIKKIIDEVKEYTKEI----EENNKNIKDELDK 1387
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2339 NEKLFK------NYQTLKTSLAS---GAQVNPTTQDNK--NPHVTSRATQLTTEKIRELENS-----LHEAKESAMHKES 2402
Cdd:TIGR01612 1388 SEKLIKkikddiNLEECKSKIEStldDKDIDECIKKIKelKNHILSEESNIDTYFKNADENNenvllLFKNIEMADNKSQ 1467
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2403 KIIKMQKElEVTNDI---IAKLQAKVHESNKC-LEKTKETIQVLQDKVALgaKPYKEEIEDLKMKLVKIdlekmknakEF 2478
Cdd:TIGR01612 1468 HILKIKKD-NATNDHdfnINELKEHIDKSKGCkDEADKNAKAIEKNKELF--EQYKKDVTELLNKYSAL---------AI 1535
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2479 EKEISATKATVEyqkEVIRLLREnlrrsqqAQDTSVISEHTDPQPSNKpltcgggsgivqntkaliLKSEHIRLEKEISK 2558
Cdd:TIGR01612 1536 KNKFAKTKKDSE---IIIKEIKD-------AHKKFILEAEKSEQKIKE------------------IKKEKFRIEDDAAK 1587
|
....*....
gi 71061468 2559 LKQQNEQLI 2567
Cdd:TIGR01612 1588 NDKSNKAAI 1596
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1872-2071 |
1.04e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1872 NLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKtarmlskehketvdKLREKISEKT 1951
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--------------ALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1952 IQISDIQKDLDKSKDELQKKIQELQK----KELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKL 2027
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRlgrqPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 71061468 2028 HESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMIARDRQ 2071
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA 213
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1510-1812 |
1.06e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.36 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1510 IQKQLEAINDKLQnkiQEIYEKEEQFNIKQisEVQEKVNEL---KQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQ 1586
Cdd:pfam17380 277 IVQHQKAVSERQQ---QEKFEKMEQERLRQ--EKEEKAREVerrRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1587 IMIKE--KEEMKRV-QEALQIERDQLKEnTKEIVAKMKESQEKEYQFLKMTAVNETQEkmceiEHLKEQFETQKLNLENI 1663
Cdd:pfam17380 352 RIRQEerKRELERIrQEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILE-----EERQRKIQQQKVEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1664 ETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE--RDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLR 1741
Cdd:pfam17380 426 RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVErlRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERK 505
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71061468 1742 GIVSEKTNEISNMQKDLEHSNDAL-KAQDLKIQEELRIAHMHLKEQQETIDKLRgIVSEKTDKLSNMQKDLE 1812
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMR-KATEERSRLEAMERERE 576
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1803-2142 |
1.14e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1803 KLSNMQKDLEnsnaKLQEKIQELKAnehQLITLKKDVNETQKKvsemEQLKKQIKDQSLTLSKLEIENLNLAQKLHEnle 1882
Cdd:COG1196 180 KLEATEENLE----RLEDILGELER---QLEPLERQAEKAERY----RELKEELKELEAELLLLKLRELEAELEELE--- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1883 emksvmKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLD 1962
Cdd:COG1196 246 ------AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1963 KSKDELQKKIQELQKKELQLLRVKEdvnmshkkinEMEQLKKQFEAQNLSMQsvrmdnfQLTKKLHESLEEIRIVAKERD 2042
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEE----------ELEEAEEELEEAEAELA-------EAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2043 ELRRIKESLKMERDQFIATLREMIARDRQNHQvkpEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSL 2122
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLE---RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
330 340
....*....|....*....|
gi 71061468 2123 DLEKEIEFQKELSMRVKANL 2142
Cdd:COG1196 460 ALLELLAELLEEAALLEAAL 479
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1524-2187 |
1.16e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.46 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1524 KIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIK-EKEEMKRVQEAL 1602
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSaADAAVAKDRSEL 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1603 QIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLeNIETENIRLTQILHENLEEMR 1682
Cdd:pfam12128 325 EALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRS-KIKEQNNRDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1683 SV-----TKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEktneISNMQKD 1757
Cdd:pfam12128 404 EArdrqlAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDER----IERAREE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1758 LEHSNdalkAQDLKIQEELRiahmhlkeqqetidKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLIT-LK 1836
Cdd:pfam12128 480 QEAAN----AEVERLQSELR--------------QARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHfLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1837 KDV---NETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLH-ENLEEMKSVMkerdnlrrVEETLKLERDQLKESL 1912
Cdd:pfam12128 542 KEApdwEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDlKRIDVPEWAA--------SEEELRERLDKAEEAL 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1913 QETKARDLEIQQELKTARM-LSKEHKETVDKLR--EKISEKTIQISDIQKDLdksKDELQKKIQELQKKELQLLRVKEdv 1989
Cdd:pfam12128 614 QSAREKQAAAEEQLVQANGeLEKASREETFARTalKNARLDLRRLFDEKQSE---KDKKNKALAERKDSANERLNSLE-- 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1990 nmSHKKINEMEQlKKQFEAQNLSMQSVRMdnfqltkklhESLEEIRIVAKERD-ELRRIKESLKMERDQF---IATLREM 2065
Cdd:pfam12128 689 --AQLKQLDKKH-QAWLEEQKEQKREART----------EKQAYWQVVEGALDaQLALLKAAIAARRSGAkaeLKALETW 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2066 IARDRQNHQVKPEKRL-LSDGQQHLTESLrEKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQK--ELSMRVKANL 2142
Cdd:pfam12128 756 YKRDLASLGVDPDVIAkLKREIRTLERKI-ERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAisELQQQLARLI 834
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 71061468 2143 SLPYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQ 2187
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDA 879
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1520-2062 |
1.20e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.34 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1520 KLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ 1599
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLC 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1600 EALQIERDQLKENTKEIvakmkESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLE 1679
Cdd:pfam05483 158 NLLKETCARSAEKTKKY-----EYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYK 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1680 EMRSVTKERDDLRSVEETLKVER-DQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLrgivsekTNEISNMQKDL 1758
Cdd:pfam05483 233 KEINDKEKQVSLLLIQITEKENKmKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHL-------TKELEDIKMSL 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1759 EHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKd 1838
Cdd:pfam05483 306 QRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITM- 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1839 vnETQKKVSEMEQLKKQIKDQSLTLskleienlnlaQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQ--ETK 1916
Cdd:pfam05483 385 --ELQKKSSELEEMTKFKNNKEVEL-----------EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQarEKE 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1917 ARDLEIQqeLKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKki 1996
Cdd:pfam05483 452 IHDLEIQ--LTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKK-- 527
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 1997 nEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATL 2062
Cdd:pfam05483 528 -QEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKIL 592
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
747-952 |
1.36e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 747 SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLH 826
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 827 MDFEQKYKMVLEENERMNQ----EIVNLSKEAQKFDSSLGALKtelsYKTQELQEKTREVQERLNEMEQLKEQLENRDST 902
Cdd:COG4942 100 EAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 71061468 903 LQTVEREKTLITEKLQQTLEE----VKTLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:COG4942 176 LEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1288-1534 |
1.44e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1288 EQELLPNVKEVSETQETMNElellTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQ 1367
Cdd:COG4942 26 EAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1368 LKEHIRETLAKIQESQSKQEQSLnmkekdnettkivsemeQFKPKDSALLRIEIEMLG-LSKRLQEshdEMKSVAKEKDD 1446
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLAL-----------------LLSPEDFLDAVRRLQYLKyLAPARRE---QAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1447 LQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQ 1526
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEAL-------KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*...
gi 71061468 1527 EIYEKEEQ 1534
Cdd:COG4942 235 EAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
509-1160 |
1.79e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 1.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 509 NLVLDYEQLRTEKEEMELKLKEKNDLDEfealERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKE 588
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKLEVELNKLEK----QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 589 DQIKKLQEYIDSQKLENIKmdLSYSLESIEDPKQMKQTLfdaetvaldaKRESAFLRSENLELKEKMKELATTYKQMEND 668
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLK--LELLLSNLKKKIQKNKSL----------ESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 669 IQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEG----KITDLQKELNKEVEENEalREEVI 744
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnnqKEQDWNKELKSELKNQE--KKLEE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 745 LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKT 824
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 825 LHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQ 904
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 905 TVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQ--ETINT 982
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDE 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 983 LKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKifSLIQEKNELQQMLESV 1062
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE--KLSSIIKNIKSKKNKL 643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1063 IAEKEQLKTDLKENIEMT---IENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:TIGR04523 644 KQEVKQIKETIKEIRNKWpeiIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKL 723
|
650 660
....*....|....*....|.
gi 71061468 1140 QQQLLNVQEEMSEMQKKINEI 1160
Cdd:TIGR04523 724 DEFSKELENIIKNFNKKFDDA 744
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1419-2064 |
2.49e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.19 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1419 IEIEMLGLSKRLQESHDEMKSVAKEKDDLQ--------RLQEVLQSESDQLKEN---------IKEIVAKHLETEEELKV 1481
Cdd:pfam05483 97 IEAELKQKENKLQENRKIIEAQRKAIQELQfenekvslKLEEEIQENKDLIKENnatrhlcnlLKETCARSAEKTKKYEY 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1482 AHcclKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKD 1561
Cdd:pfam05483 177 ER---EETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKE 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1562 SALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKeSQEKEYQFLKMTAVNETQE 1641
Cdd:pfam05483 254 NKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQK-ALEEDLQIATKTICQLTEE 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1642 KMCEIEHLKEQFETQKLNLENIETENIRLTQILHEnleEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQE 1721
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRT---EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEE 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1722 ELKIV--HMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSE 1799
Cdd:pfam05483 410 LKKILaeDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1800 KTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQ-KLH 1878
Cdd:pfam05483 490 LTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKcKLD 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1879 ENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQ 1958
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1959 KDLDKSKDELQKKIQELQKKELQLLRVKEDVNMS---------------HKKINEMEQLKKQFEAQNLSMQSVRMDNFQL 2023
Cdd:pfam05483 650 QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIadeavklqkeidkrcQHKIAEMVALMEKHKHQYDKIIEERDSELGL 729
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 2024 TKKLHESLEEIRI---------------VAKERDELRRIKESLKMERDQFIATLRE 2064
Cdd:pfam05483 730 YKNKEQEQSSAKAaleielsnikaellsLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1105-1666 |
2.79e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1105 KNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELT----------- 1173
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKnkdkinklnsd 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1174 LEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSF-------ETERDHLRGYIREIEATGLQTKEELKIAHIHLKE 1246
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFlteikkkEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1247 HQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNvkEVSETQETMNELELLTEQSTTKDSTTLARI 1326
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD--NIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1327 EMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNmKEKDNETTKIVSEM 1406
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQ-NQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1407 EQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCL 1486
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1487 KEQEETINELRV----------NLSEKETEISTIQKQLEAINDKLQNKIQEI---YEKEEQFNIKQISEVQEKVNELKQF 1553
Cdd:TIGR04523 422 ELLEKEIERLKEtiiknnseikDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsINKIKQNLEQKQKELKSKEKELKKL 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1554 KEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKE----------------KEEMKRVQEALQIERDQLKENTKEIV 1617
Cdd:TIGR04523 502 NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKisdledelnkddfelkKENLEKEIDEKNKEIEELKQTQKSLK 581
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1618 AKMKESQE--KEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETE 1666
Cdd:TIGR04523 582 KKQEEKQEliDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1816-2114 |
2.88e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1816 AKLQEKIQELKAnehqlitLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKL------EIENLNLAQKLHENLEEMKSVMK 1889
Cdd:COG4913 610 AKLAALEAELAE-------LEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1890 ERDNLRRVE---ETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISD---IQKDLDK 1963
Cdd:COG4913 683 SSDDLAALEeqlEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfAAALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1964 SKDELQKKIQELQKKELQLLRVKEDvnmshKKINEMEQLKKQF--EAQNLSMQSVRMDNFQltkKLHESLEEIRIVAKER 2041
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEE-----ELERAMRAFNREWpaETADLDADLESLPEYL---ALLDRLEEDGLPEYEE 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2042 DELRRIKESLKMERDQFIATLREMI--ARDR--------QNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMD 2111
Cdd:COG4913 835 RFKELLNENSIEFVADLLSKLRRAIreIKERidplndslKRIPFGPGRYLRLEARPRPDPEVREFRQELRAVTSGASLFD 914
|
...
gi 71061468 2112 DHY 2114
Cdd:COG4913 915 EEL 917
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1810-2135 |
5.02e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1810 DLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMK 1889
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1890 ERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKE---------TVDKLREKISEKTIQISDIQKD 1960
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1961 LDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEaqnlsMQSVRMDNFQLTKKlHESLEEIRIVAKE 2040
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-----EAKAKKEELERLKK-RLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2041 RDELRRIKESLKMERDQFIATLREMIARDRQNHQVKPE-----------KRLLSDgqQHLTESLREKCSRIKELLKRYSE 2109
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTE--EHRKELLEEYTAELKRIEKELKE 470
|
330 340
....*....|....*....|....*.
gi 71061468 2110 MDDHYECLNRLSLDLEKEIEFQKELS 2135
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELI 496
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1435-1629 |
5.42e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1435 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELrvnlsekETEISTIQKQL 1514
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-------LEALQAEIDKL-------QAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1515 EAINDKLQNKIQEIYEKEEQFN--------------------IKQISE-VQEKVNELKQFKEHRKAKDSALQSIESKMLE 1573
Cdd:COG3883 82 EERREELGERARALYRSGGSVSyldvllgsesfsdfldrlsaLSKIADaDADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 1574 LTNRLQESQEEIQimiKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQ 1629
Cdd:COG3883 162 LKAELEAAKAELE---AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1359-1942 |
5.62e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.21 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1359 EALEVKHDQLKEHIRETLAKIQESQSKQEQslnMKEKDNETTKIVSEMEQFKPKDSALLR----IEIEMLGLSKRLQESH 1434
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNIDYLEEK---LKSSNLELENIKKQIADDEKSHSITLKeierLSIEYNNAMDDYNNLK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1435 DEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINE---LRVNLSEKETEISTIQ 1511
Cdd:PRK01156 239 SALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDyfkYKNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1512 KQLEAINDKLQnKIQEIYEKEEQFNIKQiSEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQ-------EE 1584
Cdd:PRK01156 319 AEINKYHAIIK-KLSVLQKDYNDYIKKK-SRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIErmsafisEI 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1585 IQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEK--MC-------EIEHLKEQFET 1655
Cdd:PRK01156 397 LKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpVCgttlgeeKSNHIINHYNE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1656 QKLNLEnietENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVE-RDQLKENLRETITRDLEKQEELKIVHMHLKEHQ 1734
Cdd:PRK01156 477 KKSRLE----EKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSInEYNKIESARADLEDIKIKINELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1735 ETIDKLrgivsektnEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQ-QETIDKLRGIVSEKTDKLS---NMQKD 1810
Cdd:PRK01156 553 NRYKSL---------KLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQlNDLESRLQEIEIGFPDDKSyidKSIRE 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1811 LENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEiENLNLAQKlhenleEMKSVMKE 1890
Cdd:PRK01156 624 IENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIE-DNLKKSRK------ALDDAKAN 696
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 71061468 1891 RDNLRRVEETLKLERDQLKESLQETKaRDLEIQQELKTARMLSKEHKETVDK 1942
Cdd:PRK01156 697 RARLESTIEILRTRINELSDRINDIN-ETLESMKKIKKAIGDLKRLREAFDK 747
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
654-1627 |
5.82e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.10 E-value: 5.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 654 KMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKvpkdllcNLELEGKITDLQKELNKEV 733
Cdd:pfam01576 16 KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAAR-------KQELEEILHELESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 734 EENEALReevillselkslpSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYK 813
Cdd:pfam01576 89 ERSQQLQ-------------NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 814 STDQEFQNFKTLHMDFEQKYKMVLE---ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLnemE 890
Cdd:pfam01576 156 LLEERISEFTSNLAEEEEKAKSLSKlknKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI---A 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 891 QLKEQLENRDSTLQTVErekTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQ-----------------LKSDIH 953
Cdd:pfam01576 233 ELRAQLAKKEEELQAAL---ARLEEETAQKNNALKKIRELEAQISELQEDLESERAArnkaekqrrdlgeeleaLKTELE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 954 DTVNMNIDTQE----------QLRNALES-LKQHQETINTLKSKISEEVsrnlhmeENTGETKDEFQQKMVGIDK-KQDL 1021
Cdd:pfam01576 310 DTLDTTAAQQElrskreqevtELKKALEEeTRSHEAQLQEMRQKHTQAL-------EELTEQLEQAKRNKANLEKaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1022 EAKNT------QTLTADVKDNEiiEQQRKIFSLIQE-----------KNELQQMLESVIAEKEQLKTDLKENIEMTIENQ 1084
Cdd:pfam01576 383 ESENAelqaelRTLQQAKQDSE--HKRKKLEGQLQElqarlseserqRAELAEKLSKLQSELESVSSLLNEAEGKNIKLS 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1085 EELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN------ 1158
Cdd:pfam01576 461 KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEedagtl 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1159 ------------EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFET------------ 1214
Cdd:pfam01576 541 ealeegkkrlqrELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQmlaeekaisary 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1215 --ERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRS----VSEKTAQIINTQDLEKSHTKLQEeipvlhee 1288
Cdd:pfam01576 621 aeERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEmedlVSSKDDVGKNVHELERSKRALEQ-------- 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1289 qellpnvkEVSETQETMNELEllTEQSTTKDSTTLARIEMERLRLNEkfqesqeeiksltkERDnLKTIKEALEVKHDQL 1368
Cdd:pfam01576 693 --------QVEEMKTQLEELE--DELQATEDAKLRLEVNMQALKAQF--------------ERD-LQARDEQGEEKRRQL 747
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1369 KEHIRETLAKIQESQSKQEQSLNMKEkdnettKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQEshdEMKSVAKEKDDLQ 1448
Cdd:pfam01576 748 VKQVRELEAELEDERKQRAQAVAAKK------KLELDLKELEAQIDAANKGREEAVKQLKKLQA---QMKDLQRELEEAR 818
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1449 RLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEI 1528
Cdd:pfam01576 819 ASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEEL 898
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1529 yeKEEQFNIKQISEVQEKV--------NELKQFKEHRKAKDSALQSIESKMLELTNRLQEsqEEIQIMIKEKEEMKRVQE 1600
Cdd:pfam01576 899 --EEEQSNTELLNDRLRKStlqveqltTELAAERSTSQKSESARQQLERQNKELKAKLQE--MEGTVKSKFKSSIAALEA 974
|
1050 1060
....*....|....*....|....*..
gi 71061468 1601 ALQIERDQLKENTKEIVAKMKESQEKE 1627
Cdd:pfam01576 975 KIAQLEEQLEQESRERQAANKLVRRTE 1001
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1762-1962 |
6.77e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 51.55 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1762 NDALKAQDLK---IQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQEL-KANEHQLITLKK 1837
Cdd:PHA02562 180 NQQIQTLDMKidhIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLvMDIEDPSAALNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1838 DVNETQKKVSEMEQLKK----------------QIKDQSLTLSKLEIENLNLAQKLH---ENLEEMKSVMKERDNLRRVE 1898
Cdd:PHA02562 260 LNTAAAKIKSKIEQFQKvikmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEkldTAIDELEEIMDEFNEQSKKL 339
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 1899 ETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLD 1962
Cdd:PHA02562 340 LELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1904-2135 |
6.86e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 6.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1904 ERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLL 1983
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1984 RVKEDVNM---SHKKINEMEQLKKQFEAQNLSMQSVRMDNFQ-LTKKLHESLEEIRivaKERDELRRIKESLKMERDQFI 2059
Cdd:COG4942 101 AQKEELAEllrALYRLGRQPPLALLLSPEDFLDAVRRLQYLKyLAPARREQAEELR---ADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 2060 ATLREMIARDRQNHQVKPEKRLLsdgQQHLTESLREKCSRIKELLKRYSEmddhyecLNRLSLDLEKEIEFQKELS 2135
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKL---LARLEKELAELAAELAELQQEAEE-------LEALIARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1329-1549 |
7.96e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1329 ERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSK-QEQSLNMKEKDNETTKIVSEME 1407
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1408 QFKPKDSALLRiEIEMLGLSKRLQE--SHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCC 1485
Cdd:COG4942 101 AQKEELAELLR-ALYRLGRQPPLALllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 1486 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEiyEKEEQFNIKQISEVQEKVNE 1549
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE--AEELEALIARLEAEAAAAAE 241
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1016-1527 |
8.33e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.45 E-value: 8.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1016 DKKQDLEAKNTQTL-TADVKdneiieqqrkifSLIQEKNELQQMLES---VIAEKEQLKTDLKENIEMTIENQEELrllg 1091
Cdd:PRK11281 40 DVQAQLDALNKQKLlEAEDK------------LVQQDLEQTLALLDKidrQKEETEQLKQQLAQAPAKLRQAQAEL---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1092 DELKKQQEIVAQE--KNHAIKK-EGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PRK11281 104 EALKDDNDEETREtlSTLSLRQlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1169 NKELTLEHMETERLELAQKLNEnyeevKSITKERKVLK---ELQKSFETERDHLRGYIREIEAtglqtkeelkiahiHLK 1245
Cdd:PRK11281 184 VGGKALRPSQRVLLQAEQALLN-----AQNDLQRKSLEgntQLQDLLQKQRDYLTARIQRLEH--------------QLQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1246 EHQETIDELRRSVSEKTA-QIINTQDLEKSHTKlqeeiPVLHEEQELlpNVKeVSEtqetmnelELLteQSTTkdsttla 1324
Cdd:PRK11281 245 LLQEAINSKRLTLSEKTVqEAQSQDEAARIQAN-----PLVAQELEI--NLQ-LSQ--------RLL--KATE------- 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1325 riemerlRLNEKFQESQEeikslTKER-DNL----KTIKEALEVKHDQLkehireTLAKIqesQSKQEQSLnmkekdnET 1399
Cdd:PRK11281 300 -------KLNTLTQQNLR-----VKNWlDRLtqseRNIKEQISVLKGSL------LLSRI---LYQQQQAL-------PS 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1400 TKIVSEMeqfkPKDSALLRIEIemlglsKRLQESHDEMKSVAKEKDDLQRLQEvlQSESDQLKENIKEIvakhLETEEEL 1479
Cdd:PRK11281 352 ADLIEGL----ADRIADLRLEQ------FEINQQRDALFQPDAYIDKLEAGHK--SEVTDEVRDALLQL----LDERREL 415
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 71061468 1480 kvahcclkeQEETINELRVNLSEKET-EIStiQKQLEAINDKLQNKIQE 1527
Cdd:PRK11281 416 ---------LDQLNKQLNNQLNLAINlQLN--QQQLLSVSDSLQSTLTQ 453
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1716-2479 |
8.71e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1716 DLEKQEELKIVHMHLKEHQETIdklrgiVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRG 1795
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV------LEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMAD 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1796 IVSEKtdklSNMQKDLENsnaKLQEKIQELKANEhqliTLKKDVNETQKkvSEMEQLKKQIKDQSLTLSKLEIENLNLAQ 1875
Cdd:pfam15921 132 IRRRE----SQSQEDLRN---QLQNTVHELEAAK----CLKEDMLEDSN--TQIEQLRKMMLSHEGVLQEIRSILVDFEE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1876 ----KLHEnlEEMKSVMKERDNLRRVEETLKlerdQLKESLQETKARDLEIQQELKTARMLSKEHKETV-----DKLREK 1946
Cdd:pfam15921 199 asgkKIYE--HDSMSTMHFRSLGSAISKILR----ELDTEISYLKGRIFPVEDQLEALKSESQNKIELLlqqhqDRIEQL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1947 ISEKTIQISDIQKDLDKSKDE---LQKKIQELQKKelqllrVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNFQ- 2022
Cdd:pfam15921 273 ISEHEVEITGLTEKASSARSQansIQSQLEIIQEQ------ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEe 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2023 LTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATL----REMIARDRQNHQVKPEKRLLSDGQQHLTESLREK-- 2096
Cdd:pfam15921 347 LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLhkreKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnm 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2097 -CSRIKELLKRYS-----EMDDHYECLNRLSLDLEKEIEFQKELSmrvkanlSLPYLQTKHIEKLfTANQRCSMEFHRIM 2170
Cdd:pfam15921 427 eVQRLEALLKAMKsecqgQMERQMAAIQGKNESLEKVSSLTAQLE-------STKEMLRKVVEEL-TAKKMTLESSERTV 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2171 KKLKYVLSYVTKIKEEQHESINKFEMDF---IDEVEKQKELLIKIQHLQQDCDVpsrelrdLKLNQNMDLHIEEILKDFS 2247
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVdlkLQELQHLKNEGDHLRNVQTECEA-------LKLQMAEKDKVIEILRQQI 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2248 ESEFPSIKTEFQQVLSNRKEMTQFLEEWLNTRFDIEKLKNGIQKENDRICQVNNFFNN---RIIAIMNESTEFEERSATI 2324
Cdd:pfam15921 572 ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDlelEKVKLVNAGSERLRAVKDI 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2325 SKEWEQDLKSLKE-KNE--KLFKNYQTLKTSLASGAQVNPTTQDNKNPHVTSRATQLttekiRELENSLHEAKESAMHKE 2401
Cdd:pfam15921 652 KQERDQLLNEVKTsRNElnSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL-----EQTRNTLKSMEGSDGHAM 726
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 2402 SKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTKETIQVLqdkvalgakpyKEEIEDLKMKLVKIDLEKMKNAKEFE 2479
Cdd:pfam15921 727 KVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL-----------KEEKNKLSQELSTVATEKNKMAGELE 793
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1817-1978 |
9.08e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 9.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1817 KLQEKIQELKANEHQLITLKKDVNETQKKV----SEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVM--KE 1890
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELaaleARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1891 RDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTArmlskehKETVDKLREKISEKTIQISDIQKDLDKSKDELQK 1970
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAEL-------EAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 71061468 1971 KIQELQKK 1978
Cdd:COG1579 164 EREELAAK 171
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1003-1603 |
9.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 9.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1003 ETKDEFQQKM---VGIDKKQDLE-------AKNTQTLTADVKDN-----EIIEQQRKIFSLIQEKNELQQMLESVIAEKE 1067
Cdd:COG4913 173 DSFSAYLARLrrrLGIGSEKALRllhktqsFKPIGDLDDFVREYmleepDTFEAADALVEHFDDLERAHEALEDAREQIE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1068 QLkTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRtcDRLAEVEEKLKEKSQQLQEKQQQLLNVQ 1147
Cdd:COG4913 253 LL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELR--AELARLEAELERLEARLDALREELDELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1148 EEMSemQKKINEIENLKNELKNKELTLEHMETERLELAQKLN----ENYEEVKSITKERKVLKELQKSFETERDHLRGYI 1223
Cdd:COG4913 330 AQIR--GNGGDRLEQLEREIERLERELEERERRRARLEALLAalglPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1224 REIEATGLQTKEElkiahihLKEHQETIDELRRSVSEKTAQIINTQDLEKSHTKL-QEEIPVLHEEQELLPN-------- 1294
Cdd:COG4913 408 AEAEAALRDLRRE-------LRELEAEIASLERRKSNIPARLLALRDALAEALGLdEAELPFVGELIEVRPEeerwrgai 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1295 --------------------------------------VKEVSETQETMNELE-LLTEQSTTKDSTTLARIEMErlrLNE 1335
Cdd:COG4913 481 ervlggfaltllvppehyaaalrwvnrlhlrgrlvyerVRTGLPDPERPRLDPdSLAGKLDFKPHPFRAWLEAE---LGR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1336 KFQ----ESQEEI----KSLTKE-------------------------RDNLKTIkEALEVKHDQLKEHIRETLAKIQES 1382
Cdd:COG4913 558 RFDyvcvDSPEELrrhpRAITRAgqvkgngtrhekddrrrirsryvlgFDNRAKL-AALEAELAELEEELAEAEERLEAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1383 QSKQEQslnMKEKDNETTKIvsEMEQFKPKDSALLRIEIEMLGLSK-RLQESHDEMKSVAKEKDDLQRLQEVLQSESDQL 1461
Cdd:COG4913 637 EAELDA---LQERREALQRL--AEYSWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELEELEEELDEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1462 KENIKEIVAKHLETEEELKVAHCCLKEQEETINEL----------RVNLSEKETEIS-TIQKQLEAINDKLQNKIQEIYE 1530
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleerfaAALGDAVERELReNLEERIDALRARLNRAEEELER 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1531 KEEQFNIKQISEVQE------------------KVNELKQFKEhrKAKDSALQSIESKMLELTNRLQESQEEIqimikeK 1592
Cdd:COG4913 792 AMRAFNREWPAETADldadleslpeylalldrlEEDGLPEYEE--RFKELLNENSIEFVADLLSKLRRAIREI------K 863
|
730
....*....|.
gi 71061468 1593 EEMKRVQEALQ 1603
Cdd:COG4913 864 ERIDPLNDSLK 874
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
450-1561 |
1.00e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 51.37 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 450 THKLSINLLREIDESVCSESDVFSNTLDTLSEIEWNPATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLK 529
Cdd:PTZ00440 355 SFKFSLEMLSMLDSLLIKKEKILNNLFNKLFGDLKEKIETLLDSEYFISKYTNIISLSEHTLKAAEDVLKENSQKIADYA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 530 EKNDLdefEALERKTKKDQEM----QLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIdsQKLEN 605
Cdd:PTZ00440 435 LYSNL---EIIEIKKKYDEKInelkKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELL--QIINS 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 606 IKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMqVD 685
Cdd:PTZ00440 510 IKEKNNIVNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHIKDI-IS 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 686 LEKELQSAFNEITKLTSLI------------DGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREE-------VILL 746
Cdd:PTZ00440 589 LNDEIDNIIQQIEELINEAlfnkekfineknDLQEKVKYILNKFYKGDLQELLDELSHFLDDHKYLYHEakskedlQTLL 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 747 SELKSLPSEVERLRKEIQD------KSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQ 820
Cdd:PTZ00440 669 NTSKNEYEKLEFMKSDNIDniiknlKKELQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLE 748
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 821 NFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRd 900
Cdd:PTZ00440 749 VYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAH- 827
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 901 stlqtVEREKTLITEKLQQTLEEVKTLTQEKDDlKQLQESLQIERDQLKsDIhDTVNMNIDTQEQLRNALESLKQHQETI 980
Cdd:PTZ00440 828 -----TEKNDEELKQLLQKFPTEDENLNLKELE-KEFNENNQIVDNIIK-DI-ENMNKNINIIKTLNIAINRSNSNKQLV 899
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 981 NTLKskiseevsrnlhmeENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADV-KDNEIIEQQRKIFSLIQEKNELQQML 1059
Cdd:PTZ00440 900 EHLL--------------NNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLnKEKEKIEKQLSDTKINNLKMQIEKTL 965
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1060 ESVIAEKEQLKTDLKENIEMTIENQEELRLLGDEL-------------------KKQQEIVAQEKNHAIKKEGELSRTCD 1120
Cdd:PTZ00440 966 EYYDKSKENINGNDGTHLEKLDKEKDEWEHFKSEIdklnvnynilnkkiddlikKQHDDIIELIDKLIKEKGKEIEEKVD 1045
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1121 R----LAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKI-----------NEIENLKNEL--------KNKELTLEHM 1177
Cdd:PTZ00440 1046 QyislLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVeallkkidenkNKLIEIKNKShehvvnadKEKNKQTEHY 1125
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1178 ETERLELA---QKLNENYEEVKSITKERKVLKELQksfETERDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDEL 1254
Cdd:PTZ00440 1126 NKKKKSLEkiyKQMEKTLKELENMNLEDITLNEVN---EIEIEYERILIDHIVEQINNEAKKSKTIMEEIESYKKDIDQV 1202
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1255 RRSVSEKTAQIINT----------QDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLA 1324
Cdd:PTZ00440 1203 KKNMSKERNDHLTTfeynayydkaTASYENIEELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVIKENNKMENALH 1282
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1325 RIE-MERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIV 1403
Cdd:PTZ00440 1283 EIKnMYEFLISIDSEKILKEILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIE 1362
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1404 SEMEQFKPKDSAllrIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKE----NIKEIVAKHLETEEEL 1479
Cdd:PTZ00440 1363 QIKEEISNKRKE---INKYLSNIKSNKEKCDLHVRNASRGKDKIDFLNKHEAIEPSNSKEvniiKITDNINKCKQYSNEA 1439
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1480 KVAHCCLKEQEETINELRVNLSE--KETEISTIQKQLEAINDKLQNKIQEIyeKEEQFNIKQISEV-QEKVNELKQFKEH 1556
Cdd:PTZ00440 1440 METENKADENNDSIIKYEKEITNilNNSSILGKKTKLEKKKKEATNIMDDI--NGEHSIIKTKLTKsSEKLNQLNEQPNI 1517
|
....*
gi 71061468 1557 RKAKD 1561
Cdd:PTZ00440 1518 KREGD 1522
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
719-923 |
1.04e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 719 EGKITDLQKELNKEVEENEALREEvillseLKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEI 798
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAE------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 799 GKTKDDLATTQSNYKSTDQEF--QNFKtlhmDFEQKYKMVLEENERmNQEIVNLSKEAQKfdsSLGALKTELSYKTQELQ 876
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLgsESFS----DFLDRLSALSKIADA-DADLLEELKADKA---ELEAKKAELEAKLAELE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 71061468 877 EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEE 923
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1669-2036 |
1.05e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.99 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1669 RLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELKivhmhlkehqETIDKLRgivsekt 1748
Cdd:PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFG----------PALDELE------- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1749 NEISNMQKDLEhsndalKAQDLKIQEELRIAHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENsnaKLQEKIQELKAN 1828
Cdd:PRK04778 172 KQLENLEEEFS------QFVELTESGDYVEAREILDQLEEELAALE----QIMEEIPELLKELQT---ELPDQLQELKAG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1829 EHQLITlKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLN-LAQKLHENLEEMKSVM-KERDNLRRVEETLKLERD 1906
Cdd:PRK04778 239 YRELVE-EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEeKNEEIQERIDQLYDILeREVKARKYVEKNSDTLPD 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1907 QLKESLQETKARDLEIQQ----------ELKTARMLSKEHKET---VDKLREKISEKTIQISDIQKDLDKSKDELqKKIQ 1973
Cdd:PRK04778 318 FLEHAKEQNKELKEEIDRvkqsytlnesELESVRQLEKQLESLekqYDEITERIAEQEIAYSELQEELEEILKQL-EEIE 396
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 1974 ELQKK---ELQLLRVKEDVnmSHKKINEMEQ----LKKQFEAQNLSMQSVR-MDNFQLT----KKLHESLEEIRI 2036
Cdd:PRK04778 397 KEQEKlseMLQGLRKDELE--AREKLERYRNklheIKRYLEKSNLPGLPEDyLEMFFEVsdeiEALAEELEEKPI 469
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1670-2036 |
1.30e-05 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 50.62 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1670 LTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQEELkivhmhlkehQETIDKLrgivsekTN 1749
Cdd:pfam06160 91 IEELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKTLLANRFSY----------GPAIDEL-------EK 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1750 EISNMQKDLEHSNDALKAQDLkiqEElriAHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENsnaKLQEKIQELKANE 1829
Cdd:pfam06160 154 QLAEIEEEFSQFEELTESGDY---LE---AREVLEKLEEETDALE----ELMEDIPPLYEELKT---ELPDQLEELKEGY 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1830 HQLItlKKDVNETQKKV-SEMEQLKKQIKDQSLTLSKLEIENLNLA-QKLHENLEEM-----------KSVMKERDNLRR 1896
Cdd:pfam06160 221 REME--EEGYALEHLNVdKEIQQLEEQLEENLALLENLELDEAEEAlEEIEERIDQLydllekevdakKYVEKNLPEIED 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1897 VEETLKLERDQLKESLQETKAR------DLEIQQELKTARmlsKEHKETVDKLREKISEKTI---QISDIQKDLDKSKDE 1967
Cdd:pfam06160 299 YLEHAEEQNKELKEELERVQQSytlnenELERVRGLEKQL---EELEKRYDEIVERLEEKEVaysELQEELEEILEQLEE 375
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 1968 LQKKIQELQKKeLQLLRVKEDV--NMSHKKINEMEQLKKQFEAQNLSMQSVRMDNF-----QLTKKLHESLEEIRI 2036
Cdd:pfam06160 376 IEEEQEEFKES-LQSLRKDELEarEKLDEFKLELREIKRLVEKSNLPGLPESYLDYffdvsDEIEDLADELNEVPL 450
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1848-2069 |
1.34e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1848 EMEQLKKQIKdqslTLSKLEienlnlaqKLHENLEEMKSvmkERDNLRRVEETLKLERDQLKESLQETKARDLE-----I 1922
Cdd:COG4913 243 ALEDAREQIE----LLEPIR--------ELAERYAAARE---RLAELEYLRAALRLWFAQRRLELLEAELEELRaelarL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1923 QQELKTARMLSKEHKETVDKLREKISE-KTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEM-E 2000
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALrA 387
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 2001 QLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKESLkmerDQFIATLREMIARD 2069
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI----PARLLALRDALAEA 452
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1085-1236 |
1.42e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.55 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1085 EELRLLGDELKKQQEIVAQEKNHAIKKEGElsrtcdrlAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLK 1164
Cdd:PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFE--------KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKE 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 1165 NELKNKELTLEHMETERLELAQKLNENYEEVKSITKE---RKVLKELQKSFETERDHlrgYIREIEAtglQTKEE 1236
Cdd:PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakEILLEKVEEEARHEAAV---LIKEIEE---EAKEE 185
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
495-1096 |
1.49e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 495 NIESELNSLRADYDNLVLDYEQLRTEKEEMEL----------KLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVK 564
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelaerYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 565 HAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSySLESIEDPKQMKQTLFDAETVALDAKRESAfl 644
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIE-RLERELEERERRRARLEALLAALGLPLPAS-- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 645 RSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKmqvDLEKELQSAFNEITKLT---SLIDGKVP--KDLLCNlELE 719
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALR---DLRRELRELEAEIASLErrkSNIPARLLalRDALAE-ALG 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 720 GKITDLQ--KELnKEVEENEALREEVI----------LLSELKSLP---SEVERLRKE-------IQDKSEELHIITSEK 777
Cdd:COG4913 455 LDEAELPfvGEL-IEVRPEEERWRGAIervlggfaltLLVPPEHYAaalRWVNRLHLRgrlvyerVRTGLPDPERPRLDP 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 778 DKLFSEVVHKESRVQGLLE-EIGKTKDDLATTqsnyksTDQEFQNF-------------KTLH-MDF------------- 829
Cdd:COG4913 534 DSLAGKLDFKPHPFRAWLEaELGRRFDYVCVD------SPEELRRHpraitragqvkgnGTRHeKDDrrrirsryvlgfd 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 830 -EQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS-----YKTQELQEKTREVQERLNEMEQLKEQLENRDSTL 903
Cdd:COG4913 608 nRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREIAELEAELERLDASSDDL 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 904 QTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNM--------------NIDTQEQLRNA 969
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarlelralleerfaAALGDAVEREL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 970 LESLKQHQETINTLKSKISEEVSRnlHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQtltadVKDNEIIEQQRKIFSLI 1049
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELER--AMRAFNREWPAETADLDADLESLPEYLALLDR-----LEEDGLPEYEERFKELL 840
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 71061468 1050 QEKNelqqmlesvIAEKEQLKTDLKENIEmTIEnqEELRLLGDELKK 1096
Cdd:COG4913 841 NENS---------IEFVADLLSKLRRAIR-EIK--ERIDPLNDSLKR 875
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
485-1227 |
1.62e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 485 NPATKLLNQENIESELN----SLRAD--------YDNLVLDyEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQL 552
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEqgrlQLQADrhqehiraRDSLIQS-LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTA 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 553 IHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQK--LENIKMDLSYSLESIEDPKQMKQTLFDA 630
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIkeLQQLEGSSDRILELDQELRKAERELSKA 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 631 ETVALDA--KRESAFLRSENLELKEKMKELATTYKQMENDIQ-LYQSQLEAKKKMQVDLE-------------------- 687
Cdd:TIGR00606 491 EKNSLTEtlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTtRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfp 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 688 --KELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQD 765
Cdd:TIGR00606 571 nkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEK 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 766 KSEELHII---TSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLattqsnykstdQEFQNfktlhmDFEQKYKMVLEENER 842
Cdd:TIGR00606 651 SSKQRAMLagaTAVYSQFITQLTDENQSCCPVCQRVFQTEAEL-----------QEFIS------DLQSKLRLAPDKLKS 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 843 MNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL---------I 913
Cdd:TIGR00606 714 TESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESakvcltdvtI 793
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 914 TEKLQQTLEEV-KTLTQEKDDLKQLQESLQI----ERDQLKSDIHDTVNMNIDTQEQLRNALESLKQH-QETINTLKS-- 985
Cdd:TIGR00606 794 MERFQMELKDVeRKIAQQAAKLQGSDLDRTVqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHlKSKTNELKSek 873
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 986 -KISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRkifsliQEKNELQQMLESVIA 1064
Cdd:TIGR00606 874 lQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK------ETSNKKAQDKVNDIK 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1065 EKEQLKTDLKENIEMTIENQEELRLLgdelkkqqeivaQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLL 1144
Cdd:TIGR00606 948 EKVKNIHGYMKDIENKIQDGKDDYLK------------QKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1145 NVQEEMSEMQKKiNEIENLKNELKNKELTLEHMETerLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIR 1224
Cdd:TIGR00606 1016 WLQDNLTLRKRE-NELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
...
gi 71061468 1225 EIE 1227
Cdd:TIGR00606 1093 EPQ 1095
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
541-1103 |
1.81e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 541 ERKTKKDQEMQLiHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDP 620
Cdd:COG1196 220 EELKELEAELLL-LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 621 KQMKQTLFDAETVAlDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKL 700
Cdd:COG1196 299 RLEQDIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 701 TSLIDGKVpKDLLcnLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKL 780
Cdd:COG1196 378 EEELEELA-EELL--EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 781 FSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVN--LSKEAQKFD 858
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgaVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 859 SSLGALKTELSYKTQELQEKTREVQERLneMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 939 ESLQIERDQL--KSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKMvgID 1016
Cdd:COG1196 613 ARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL--AE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1017 KKQDLEAKNTQTLTADVKDNEIIEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKK 1096
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERL------EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
....*..
gi 71061468 1097 QQEIVAQ 1103
Cdd:COG1196 765 LERELER 771
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
512-785 |
2.15e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 512 LDYEQLRTEKEEMElKLKEKndLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQI 591
Cdd:PRK05771 40 LSNERLRKLRSLLT-KLSEA--LDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 592 KKLQEYIDS-QKLENIKMDLSYslesiedpkqmkqtLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQ 670
Cdd:PRK05771 117 KELEQEIERlEPWGNFDLDLSL--------------LLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 671 LYqsqleAKKKMQVDLEKELqsAFNEITKLtSLIDGKVPKDLLCNL-----ELEGKITDLQKELNK-------------E 732
Cdd:PRK05771 183 VV-----VLKELSDEVEEEL--KKLGFERL-ELEEEGTPSELIREIkeeleEIEKERESLLEELKElakkyleellalyE 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71061468 733 VEENEALREEViLLSELKS---------LPSE-VERLRKEIQDKSEELHIITSEKDKLFSEVV 785
Cdd:PRK05771 255 YLEIELERAEA-LSKFLKTdktfaiegwVPEDrVKKLKELIDKATGGSAYVEFVEPDEEEEEV 316
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1486-1683 |
2.53e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1486 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI--KQISEVQEKVNELKQFKEHRKaKDSA 1563
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAleAELAELEKEIAELRAELEAQK-EELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1564 LQSIESKMLELTNRLQE--SQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKmKESQEKEYQFLKmTAVNETQE 1641
Cdd:COG4942 108 ELLRALYRLGRQPPLALllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL-RAELEAERAELE-ALLAELEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 71061468 1642 KMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRS 1683
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
493-989 |
2.91e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 493 QENIESELNSLRADYDNLVLDYEQLRtekEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQD 572
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQ---AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 573 LENELSSKVELLREKEDQIKKLQeyidsQKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKRESAFLRSENLELK 652
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELA-----EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQK----- 727
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaarl 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 728 ELNKEVEENEALREEVILLSELKSLPSEVER-LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTK---- 802
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagr 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 803 ------DDLATTQSNYKSTDQEFQNFKTLHMDFEQKY----KMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELS-YK 871
Cdd:COG1196 574 atflplDKIRARAALAAALARGAIGAAVDLVASDLREadarYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTlEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 872 TQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 951
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510
....*....|....*....|....*....|....*...
gi 71061468 952 IHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISE 989
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1783-1983 |
3.10e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1783 LKEQQETIDKLRG----IVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLkKQIKD 1858
Cdd:COG4717 51 LEKEADELFKPQGrkpeLNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1859 QSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmlsKEHKE 1938
Cdd:COG4717 130 LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL---EELQQ 206
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 71061468 1939 TVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLL 1983
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLL 251
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1065-1676 |
3.14e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1065 EKEQLKTDLKENIEMTIENQEELRL------------LGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEK 1132
Cdd:pfam05483 180 ETRQVYMDLNNNIEKMILAFEELRVqaenarlemhfkLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1133 SQQLQEKQQQLLNVQEE---MSEMQKKINEIEN-LKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKEL 1208
Cdd:pfam05483 260 TFLLEESRDKANQLEEKtklQDENLKELIEKKDhLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1209 QKSFETERDHLrgyIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLEKS-HTKLQEEIPVLHE 1287
Cdd:pfam05483 340 LNKAKAAHSFV---VTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNkEVELEELKKILAE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1288 EQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQ 1367
Cdd:pfam05483 417 DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDK 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1368 L----KEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPK---DSALLRIEIEMLG--LSKRLQESHDEMK 1438
Cdd:pfam05483 497 LllenKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNlrdELESVREEFIQKGdeVKCKLDKSEENAR 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1439 SVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAIN 1518
Cdd:pfam05483 577 SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1519 DKLQNKIQEiyekeeqfnikqisevqEKVNELKQFKEHRKAKDSALQSIESKMlELTNRLQES-QEEIQIMIKEKEEMKR 1597
Cdd:pfam05483 657 DNYQKEIED-----------------KKISEEKLLEEVEKAKAIADEAVKLQK-EIDKRCQHKiAEMVALMEKHKHQYDK 718
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 1598 VQEalqiERDQlkentkeiVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHE 1676
Cdd:pfam05483 719 IIE----ERDS--------ELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1783-2045 |
3.33e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1783 LKEQQETIDKLRGIVSEKTDK-LSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNET----QKKVSEMEQLKKQIK 1857
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleehEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1858 DQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHK 1937
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1938 ETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVR 2017
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421
|
250 260
....*....|....*....|....*...
gi 71061468 2018 MDNFQLTKKLHESLEEIRIVAKERDELR 2045
Cdd:PRK02224 422 DELREREAELEATLRTARERVEEAEALL 449
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1805-1988 |
3.84e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1805 SNMQKDLENSNAKLQEKIQE----LKANEHQLITLKKDVNETQKKVSEMEQ----LKKQIKDQSLTLSKLEIENLNLAQK 1876
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAElekeLAALKKEEKALLKQLAALERRIAALARriraLEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1877 LHENLEEMKSVM-------------------------KERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARM 1931
Cdd:COG4942 99 LEAQKEELAELLralyrlgrqpplalllspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1932 LSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKED 1988
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
863-1104 |
3.91e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 863 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEkddLKQLQESLQ 942
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---IAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 943 IERDQLKsdihdtvnmnidtqEQLRnALESLKQHQETINTLKSKISEEVSRNLHMeentgetkdefQQKMVGIDKKQDLE 1022
Cdd:COG4942 101 AQKEELA--------------ELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQY-----------LKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1023 AKNTQTLTADVKDnEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKEN-------IEMTIENQEELRLLGDELK 1095
Cdd:COG4942 155 LRADLAELAALRA-ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKElaelaaeLAELQQEAEELEALIARLE 233
|
....*....
gi 71061468 1096 KQQEIVAQE 1104
Cdd:COG4942 234 AEAAAAAER 242
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1439-1611 |
4.03e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1439 SVAKEKDDLQRLQEvLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAIN 1518
Cdd:COG1579 1 AMPEDLRALLDLQE-LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1519 DKLQ----NKIQEIYEKEEQFNIKQISEVQEkvnELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQimiKEKEE 1594
Cdd:COG1579 80 EQLGnvrnNKEYEALQKEIESLKRRISDLED---EILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAE 153
|
170
....*....|....*..
gi 71061468 1595 MKRVQEALQIERDQLKE 1611
Cdd:COG1579 154 LEAELEELEAEREELAA 170
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1814-2040 |
4.69e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1814 SNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEmeqLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDN 1893
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKA---LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1894 LRRVEETLKLERDQLKESLQETKARD-----LEIQQELKTARMLS--KEHKETVDKLREKISEKTIQISDIQKDLDKSKD 1966
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPplallLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 1967 ELQKKIQELQKKELQLLRVKEDvnmshkKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKE 2040
Cdd:COG4942 175 ELEALLAELEEERAALEALKAE------RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1323-1479 |
5.25e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1323 LARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNettkI 1402
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEA----L 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1403 VSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKS-VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEEL 1479
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAeLAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1025-1388 |
6.19e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1025 NTQTLTADVKDNEI--IEQQRKIFSLIQEKNELQQM-LESVIAEKEQLKTDLKENIEMtiENQEELRllGDELKKQQEIV 1101
Cdd:pfam17380 261 NGQTMTENEFLNQLlhIVQHQKAVSERQQQEKFEKMeQERLRQEKEEKAREVERRRKL--EEAEKAR--QAEMDRQAAIY 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1102 AQEKNHAIKKEGELSRTcdrlaEVEEKLKEKSQQLqekqqqllnvQEEMSEMQKKINEIENLKNELKNKELTLEhmetER 1181
Cdd:pfam17380 337 AEQERMAMERERELERI-----RQEERKRELERIR----------QEEIAMEISRMRELERLQMERQQKNERVR----QE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1182 LELAQKLNENYEEVKSITKERKVLKELQKSFETErdhlrgyIREIEATGLQTKEELKIAHIHLK--EHQETIDELRRSVS 1259
Cdd:pfam17380 398 LEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE-------ARQREVRRLEEERAREMERVRLEeqERQQQVERLRQQEE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1260 EKTAQIINtQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQE 1339
Cdd:pfam17380 471 ERKRKKLE-LEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 71061468 1340 S----QEEIKSLTKERDNLKTIkealevkhdqlkEHIRETLAKIQESQSKQEQ 1388
Cdd:pfam17380 550 ErrriQEQMRKATEERSRLEAM------------EREREMMRQIVESEKARAE 590
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1678-1930 |
6.26e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1678 LEEMRSVTKERDDLRSVEETLKVERDQlkenlRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEKtnEISNMQKD 1757
Cdd:COG4913 224 FEAADALVEHFDDLERAHEALEDAREQ-----IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR--RLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1758 LEHSNDALKAQdlkiQEELRIAHMHLKEQQETIDKLRGIVSE-KTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLK 1836
Cdd:COG4913 297 LEELRAELARL----EAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1837 KDVNETQKkvsEMEQLKKQIKDQSLTLSkleienlnlaqklhenlEEMKSVMKERDNLRRVEETLKLERDQLKESLQETK 1916
Cdd:COG4913 373 LPLPASAE---EFAALRAEAAALLEALE-----------------EELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250
....*....|....
gi 71061468 1917 ARDLEIQQELKTAR 1930
Cdd:COG4913 433 RRKSNIPARLLALR 446
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1186-1688 |
6.43e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1186 QKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEAtgLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQI 1265
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE--LEAELEELREELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1266 intQDLEKSHTKLQEEIPVLHEEQELLPNVKEvsETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIK 1345
Cdd:COG4717 142 ---AELPERLEELEERLEELRELEEELEELEA--ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1346 SLTKERDNLKTIKEALEVKHdqlkehireTLAKIQESQSKQEQSLNmkekdneTTKIVSEMEQFKPKDSALLRIEIEMLG 1425
Cdd:COG4717 217 EAQEELEELEEELEQLENEL---------EAAALEERLKEARLLLL-------IAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1426 LSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHccLKEQEETINELRVNLSEKET 1505
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE--LLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1506 EISTIQKQleaindKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEI 1585
Cdd:COG4717 359 LEEELQLE------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1586 QImikekEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEyqflkmtavnetqekmcEIEHLKEQFETQKLNLENIET 1665
Cdd:COG4717 433 EL-----EELEEELEELEEELEELREELAELEAELEQLEEDG-----------------ELAELLQELEELKAELRELAE 490
|
490 500
....*....|....*....|...
gi 71061468 1666 ENIRLtQILHENLEEMRSVTKER 1688
Cdd:COG4717 491 EWAAL-KLALELLEEAREEYREE 512
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1746-2514 |
6.54e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1746 EKTNEISNMQKDLEHSNDALKaqdlkiqeELRIAHMHLKEQQETIDKLRGIVSEKTD-KLSNMQKDLENSNAKLQEKIQE 1824
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILN--------ELERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1825 LKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKleiENLNLAQKLHEnLEEMKSVMKER-DNLRRVEETLKL 1903
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK---ELYALANEISR-LEQQKQILRERlANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1904 ERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLL 1983
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1984 RVKEDVNMSHKKInemEQLKKQFEAQNLSMQSVRMdnfqltKKLHESLEEIRIVAKE-RDELRRIKESLKMERDQFIATL 2062
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAEL------KELQAELEELEEELEElQEELERLEEALEELREELEEAE 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2063 REMIARDRQNHQVKPEKRLLSDGQQHLTESLREkcsrIKELLKRYSEMDDHYECLNRLsldlekeIEFQKELSMRVKANL 2142
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEG----VKALLKNQSGLSGILGVLSEL-------ISVDEGYEAAIEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2143 --SLPYLQTKHIEKLFTANQrcSMEFHRIMKKLKYVLS-----YVTKIKEEQHESINKFEMDFIDEVEKQKELLIKIQHL 2215
Cdd:TIGR02168 544 ggRLQAVVVENLNAAKKAIA--FLKQNELGRVTFLPLDsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2216 qqdcdvpsreLRDLKLNQNMDLHIEeILKDFSESEfpSIKTEFQQVLSNRKEMTQFLEEW----LNTRFDIEKLKNGIQK 2291
Cdd:TIGR02168 622 ----------LGGVLVVDDLDNALE-LAKKLRPGY--RIVTLDGDLVRPGGVITGGSAKTnssiLERRREIEELEEKIEE 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2292 ENDRICQVNNffnnRIIAIMNESTEFEERSATISKEWEQDLKSLKEknekLFKNYQTLKTSLASGAQVNPTTQDNKNPHV 2371
Cdd:TIGR02168 689 LEEKIAELEK----ALAELRKELEELEEELEQLRKELEELSRQISA----LRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2372 TSRATQLttEKIRELENSLHEAKESAMHKESKIIKMQKELEVTNDIIAKLQAKVHESNKCLEKTKETIQVLQDKVALGAK 2451
Cdd:TIGR02168 761 AEIEELE--ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 2452 PY---KEEIEDLKMKLVKIDLEkMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQDTSV 2514
Cdd:TIGR02168 839 RLedlEEQIEELSEDIESLAAE-IEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1669-2586 |
6.68e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 6.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1669 RLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQL-KENLRETITRDLEKQEELKIvhMHLKEHQETIDKLRGIVSEK 1747
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItSKEAQLESSREIVKSYENEL--DPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1748 TNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKlrgIVSEKTDKLSNMQKDLENSNAKLQEKIQE--- 1824
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQR---TVREKERELVDCQRELEKLNKERRLLNQEkte 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1825 ---------LKANEHQLITLKKDV----NETQKKVSEMEQ---LKKQIKD-QSLTLSKLEIENLNLAQKLHENLEEMKSV 1887
Cdd:TIGR00606 345 llveqgrlqLQADRHQEHIRARDSliqsLATRLELDGFERgpfSERQIKNfHTLVIERQEDEAKTAAQLCADLQSKERLK 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1888 MKERDNLRrveetlkLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQK-DLDKSKD 1966
Cdd:TIGR00606 425 QEQADEIR-------DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKaEKNSLTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1967 ELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEA----QNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERD 2042
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMltkdKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2043 ELRRIKESLKMERDQFIATLREMIARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKrysemddhyecLNRLSL 2122
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD-----------LERLKE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2123 DLEKEiefQKELSMRVKANlslpYLQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVTKIKEEQHESINKFEM--DFID 2200
Cdd:TIGR00606 647 EIEKS---SKQRAMLAGAT----AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSteSELK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2201 EVEKQKE-LLIKIQHLQQDCDVPSRELRDLK-LNQNMDLHIEEILKDFSESEfpsikTEFQQVLSNRKEMTQFLEEWLNT 2278
Cdd:TIGR00606 720 KKEKRRDeMLGLAPGRQSIIDLKEKEIPELRnKLQKVNRDIQRLKNDIEEQE-----TLLGTIMPEEESAKVCLTDVTIM 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2279 RFDIEKLKNGIQKENDRICQVNNFFNNRIIAIMN-ESTEFEERSATISKEWEQDLKSLKEKNEKLfkNYQTLKTSLASGA 2357
Cdd:TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNqEKQEKQHELDTVVSKIELNRKLIQDQQEQI--QHLKSKTNELKSE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2358 QVNPTTQDNKNPHVTSRATQLTTEkIRELENSLHEAKESAMHKESKIIKMQKELEVT----NDIIAKLQAKVHESNKCLE 2433
Cdd:TIGR00606 873 KLQIGTNLQRRQQFEEQLVELSTE-VQSLIREIKDAKEQDSPLETFLEKDQQEKEELisskETSNKKAQDKVNDIKEKVK 951
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2434 KTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDLEKMKNAKEFEKEISATKATVEYQKEVIRLLRENLRRSQQAQDTS 2513
Cdd:TIGR00606 952 NIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELK 1031
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71061468 2514 VISEhtdpqpsnkplTCGGGSGIVQNTKALILKSEHIRLEKEISKLKQQNEQLIKQKNELLSNNQHLSNEVKT 2586
Cdd:TIGR00606 1032 EVEE-----------ELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1564-1724 |
7.16e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 7.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1564 LQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQE--KEYQFLKMTAVNETqe 1641
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAriKKYEEQLGNVRNNK-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1642 kmcEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEKQE 1721
Cdd:COG1579 90 ---EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
...
gi 71061468 1722 ELK 1724
Cdd:COG1579 167 ELA 169
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1787-1976 |
7.30e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1787 QETIDKLRGIVSEKTDKLSNMQK--DLENSNAKLQEKIQELKANEHQLITLKKDVNETQkkvSEMEQLKKQIKDQSLTLS 1864
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE---ARLAALRAQLGSGPDALP 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1865 klEIENLNLAQKLHENLEEMKSvmKERDNLRRVEE------TLKLERDQLKESLQETKARDL-EIQQELKTARMLSKEHK 1937
Cdd:COG3206 258 --ELLQSPVIQQLRAQLAELEA--ELAELSARYTPnhpdviALRAQIAALRAQLQQEAQRILaSLEAELEALQAREASLQ 333
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 71061468 1938 ETVDKLREKIS---EKTIQISDIQKDLDKSK---DELQKKIQELQ 1976
Cdd:COG3206 334 AQLAQLEARLAelpELEAELRRLEREVEVARelyESLLQRLEEAR 378
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
873-1468 |
7.66e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 873 QELQEKTREVQERLNEMEQLKEQLEnrdstLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI 952
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALR-----LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 953 hdtvnMNIDTQ--EQLRNALESLKQHQETINTlKSKISEEVSRNLHMEENtgETKDEFQQKMVGI----DKKQDLEAKNT 1026
Cdd:COG4913 333 -----RGNGGDrlEQLEREIERLERELEERER-RRARLEALLAALGLPLP--ASAEEFAALRAEAaallEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1027 QTLTAdvKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTienQEELRLLGDELkkqqEIVAQEKN 1106
Cdd:COG4913 405 EALAE--AEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLD---EAELPFVGELI----EVRPEEER 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1107 --HAIkkEGELS--RTC-----DRLAEV-----EEKLKEKsqqlqekqqqllnVQ-EEMSEMQKKINEIENLKNELKNKE 1171
Cdd:COG4913 476 wrGAI--ERVLGgfALTllvppEHYAAAlrwvnRLHLRGR-------------LVyERVRTGLPDPERPRLDPDSLAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1172 LTLEHMETERL--ELAQKLN----ENYEEV----KSITKERKVlkelqKSFETERDH-LRGYIREIEATGLQTKEelKIA 1240
Cdd:COG4913 541 DFKPHPFRAWLeaELGRRFDyvcvDSPEELrrhpRAITRAGQV-----KGNGTRHEKdDRRRIRSRYVLGFDNRA--KLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1241 HIhlkehQETIDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET-QETMNELELLteqstTKD 1319
Cdd:COG4913 614 AL-----EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiAELEAELERL-----DAS 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1320 STTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLK------------------------EHIRET 1375
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaaedlarlelralleerfaaALGDAV 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1376 LAKIQESQSKQEQSLNmKEKDNETTKIVSEMEQFK---PKDSALLRIEIEMLG----LSKRLQESH-----DEMKSVAKE 1443
Cdd:COG4913 764 ERELRENLEERIDALR-ARLNRAEEELERAMRAFNrewPAETADLDADLESLPeylaLLDRLEEDGlpeyeERFKELLNE 842
|
650 660
....*....|....*....|....*..
gi 71061468 1444 --KDDLQRLQEVLQSESDQLKENIKEI 1468
Cdd:COG4913 843 nsIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
880-1211 |
8.12e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 880 REVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQT-LEEVKTLTQEkddlkqlQESLQIERDQLKSDIHdtvnm 958
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAeMDRQAAIYAE-------QERMAMERERELERIR----- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 959 nidtQEQLRNALESLKQHQetintlkskISEEVSRNLHMEentgETKDEFQQKMVGIdkKQDLEAKNTQTLTADVKDNEI 1038
Cdd:pfam17380 355 ----QEERKRELERIRQEE---------IAMEISRMRELE----RLQMERQQKNERV--RQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1039 IEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEElRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1118
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE-RLRQQEEERKRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1119 cdrlAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERL-ELAQKLNENYEEVKS 1197
Cdd:pfam17380 495 ----KILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIqEQMRKATEERSRLEA 570
|
330
....*....|....
gi 71061468 1198 ITKERKVLKELQKS 1211
Cdd:pfam17380 571 MEREREMMRQIVES 584
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1428-1629 |
8.65e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 8.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1428 KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEI 1507
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1508 STIQ---------------KQLEAINDKLQNKIQEIYEKEEQFNIKQiSEVQEKVNELKQFK----EHRKAKDSALQSIE 1568
Cdd:COG3883 103 SYLDvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKK-AELEAKLAELEALKaeleAAKAELEAQQAEQE 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1569 SKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQ 1629
Cdd:COG3883 182 ALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
543-802 |
9.74e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 9.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 543 KTKKDQEMQLIHEIsnlkNLVkHAEVYNQDLENE-----------LSSKVELLR---EKEDQIKKLQEYIDSQKLENIKM 608
Cdd:PRK05771 15 KSYKDEVLEALHEL----GVV-HIEDLKEELSNErlrklrslltkLSEALDKLRsylPKLNPLREEKKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 609 DLSYSLESIEDpkqmkqtlfdaetvaldakresaflrsenlELKEKMKELattyKQMENDIQLYQSQLEAKKKMQ---VD 685
Cdd:PRK05771 90 DVEEELEKIEK------------------------------EIKELEEEI----SELENEIKELEQEIERLEPWGnfdLD 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 686 LEKELQSafneitKLTSLIDGKVPKDLLCNLELEGKIT--------------------DLQKELNKEVEENEALREEV-- 743
Cdd:PRK05771 136 LSLLLGF------KYVSVFVGTVPEDKLEELKLESDVEnveyistdkgyvyvvvvvlkELSDEVEEELKKLGFERLELee 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 744 ---------ILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESrvqgLLEEIGKTK 802
Cdd:PRK05771 210 egtpselirEIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAE----ALSKFLKTD 273
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
685-1212 |
1.02e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 685 DLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQ 764
Cdd:PRK01156 187 YLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 765 DKSEELHIITSEKDKLF----SEVVHKESRVQGL------------------------------LEEIGKTKDDLATTQS 810
Cdd:PRK01156 267 MELEKNNYYKELEERHMkiinDPVYKNRNYINDYfkykndienkkqilsnidaeinkyhaiikkLSVLQKDYNDYIKKKS 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 811 NYKSTDQEFQNFKTLHMDF-------EQKYKMVLEEN---ERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTR 880
Cdd:PRK01156 347 RYDDLNNQILELEGYEMDYnsylksiESLKKKIEEYSkniERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVS 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 881 EVQERLNEMEQLKEQLENRDSTL----------------------QTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:PRK01156 427 SLNQRIRALRENLDELSRNMEMLngqsvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 939 ESLQIERdqlksdihdtVNMNIDTQEQLRNALESLKQHQETINTLKSKiseevsrnlhmeentgETKDEFQQKMVGIDKK 1018
Cdd:PRK01156 507 EYLESEE----------INKSINEYNKIESARADLEDIKIKINELKDK----------------HDKYEEIKNRYKSLKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1019 QDLEAKNTQTLTAD-VKDNEIIEQQRKIFSLIQEK-NELQQMLESVIAEKEQLKTDLKENIEmtiENQEELRLLGDELKK 1096
Cdd:PRK01156 561 EDLDSKRTSWLNALaVISLIDIETNRSRSNEIKKQlNDLESRLQEIEIGFPDDKSYIDKSIR---EIENEANNLNNKYNE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1097 QQEIVAQEKnhaikkegELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEH 1176
Cdd:PRK01156 638 IQENKILIE--------KLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709
|
570 580 590
....*....|....*....|....*....|....*.
gi 71061468 1177 METERLELAQKLNENYEEVKSITKERKVLKELQKSF 1212
Cdd:PRK01156 710 RINELSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1440-2070 |
1.06e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 47.82 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1440 VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEeLKVAHCCLKEQEETineLRVNLSEKETeistIQKQLEAIND 1519
Cdd:pfam07111 68 ISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDA-LAVAEKAGQAEAEG---LRAALAGAEM----VRKNLEEGSQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1520 KLQNKIQEIYEKEeqfnIKQISEVQEKVneLKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ 1599
Cdd:pfam07111 140 RELEEIQRLHQEQ----LSSLTQAHEEA--LSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEEL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1600 EALQIERDQLKENTKEIVAKMKESQEKEYqflkmtavnETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLE 1679
Cdd:pfam07111 214 EAQVTLVESLRKYVGEQVPPEVHSQTWEL---------ERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEE 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1680 EMRSVTKERDDL-----RSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETidklrgiVSEKTNEISNM 1754
Cdd:pfam07111 285 ELTRKIQPSDSLepefpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQ-------VTSQSQEQAIL 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1755 QKDLEHSNDALKAQDLKI---QEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQ 1831
Cdd:pfam07111 358 QRALQDKAAEVEVERMSAkglQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNR 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1832 LITLKKDVNETQ----KKVSeMEQLKKQ-----------IKDQSLTLSKLEIENLNLAQKLHENLEEMKS-VMKERDNLR 1895
Cdd:pfam07111 438 LSYAVRKVHTIKglmaRKVA-LAQLRQEscpppppappvDADLSLELEQLREERNRLDAELQLSAHLIQQeVGRAREQGE 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1896 RVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTiqisdiqkdlDKSKDELQKKIQEL 1975
Cdd:pfam07111 517 AERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQ----------EIYGQALQEKVAEV 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1976 QKkelqllRVKEDVNMSHKKINEMEQlkkqfeAQNLSMQSVRMDNFQLTKKlhesleeirivaKERD-ELRRIKESLKME 2054
Cdd:pfam07111 587 ET------RLREQLSDTKRRLNEARR------EQAKAVVSLRQIQHRATQE------------KERNqELRRLQDEARKE 642
|
650
....*....|....*.
gi 71061468 2055 RDQFIATLREMIARDR 2070
Cdd:pfam07111 643 EGQRLARRVQELERDK 658
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
859-1116 |
1.23e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 859 SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTverektlITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEE-------LNEEYNELQAELEALQAEIDKLQAEI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 939 ESLQIERDQLksdihdtvnmnidtQEQLRNALESLKQHQETINTLKSKISeevSRNLhmeentgetkDEFQQKMVGIDKK 1018
Cdd:COG3883 75 AEAEAEIEER--------------REELGERARALYRSGGSVSYLDVLLG---SESF----------SDFLDRLSALSKI 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1019 QDLEAKNTQTLTADVKDNE-----IIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDE 1093
Cdd:COG3883 128 ADADADLLEELKADKAELEakkaeLEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
250 260
....*....|....*....|...
gi 71061468 1094 LKKQQEIVAQEKNHAIKKEGELS 1116
Cdd:COG3883 208 AEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1491-2344 |
1.28e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1491 ETINELRVNLSEKETEISTIQKQLeainDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESK 1570
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQL----ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1571 MLELTNRLQESQEEI------------QIMIKEKEEMKRVQE---ALQIERDQLKENTKEIVAKMKESQEKEYQflkmtA 1635
Cdd:TIGR02169 253 LEKLTEEISELEKRLeeieqlleelnkKIKDLGEEEQLRVKEkigELEAEIASLERSIAEKERELEDAEERLAK-----L 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1636 VNETQEKMCEIEHLKEQFETQKLNLENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITR 1715
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1716 DLEKQEELKIVHMHLKEHQETIDKLRGivsektnEISNMQKDLEHSNDALKAQDLKIQeelRIAHMHLKEQQEtIDKLRG 1795
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEA-------KINELEEEKEDKALEIKKQEWKLE---QLAADLSKYEQE-LYDLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1796 IVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQ-----SLTLSKLEIEN 1870
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAievaaGNRLNNVVVED 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1871 LNLAQKLHENLEEMKS-------VMKERDNLRRVEETLK----------LERDQLKESLQETKARDLEIQQELKTARML- 1932
Cdd:TIGR02169 557 DAVAKEAIELLKRRKAgratflpLNKMRDERRDLSILSEdgvigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLm 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1933 -----------------------SKEHKETVDKLREKisEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDV 1989
Cdd:TIGR02169 637 gkyrmvtlegelfeksgamtggsRAPRGGILFSRSEP--AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1990 NMSHKKI-NEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKESLKMERDqfiatlremiar 2068
Cdd:TIGR02169 715 SRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN------------ 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2069 drqnhqvKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHyecLNRLSLD---LEKEIEFQKELSMRVKAnlslp 2145
Cdd:TIGR02169 783 -------DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK---LNRLTLEkeyLEKEIQELQEQRIDLKE----- 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2146 ylQTKHIEKLFTANQRCSMEFHRIMKKLKYVLSYVtkikEEQHESINKFemdfIDEVEKQ-KELLIKIQHLQQDCDvpsr 2224
Cdd:TIGR02169 848 --QIKSIEKEIENLNGKKEELEEELEELEAALRDL----ESRLGDLKKE----RDELEAQlRELERKIEELEAQIE---- 913
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2225 elrDLKLNQNMDLHIEEILKDfsesefpsiktEFQQVLSNRKEMTQFLEEWLntrfDIEKLKNGIQKENDRICQVNNFfN 2304
Cdd:TIGR02169 914 ---KKRKRLSELKAKLEALEE-----------ELSEIEDPKGEDEEIPEEEL----SLEDVQAELQRVEEEIRALEPV-N 974
|
890 900 910 920
....*....|....*....|....*....|....*....|
gi 71061468 2305 NRIIaimnesTEFEERsatiskewEQDLKSLKEKNEKLFK 2344
Cdd:TIGR02169 975 MLAI------QEYEEV--------LKRLDELKEKRAKLEE 1000
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1783-2017 |
1.98e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1783 LKEQQETIDKLRGIV----SEKTDKLSNMQKDLENSNAKLQEKiQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD 1858
Cdd:COG5022 832 LRETEEVEFSLKAEVliqkFGRSLKAKKRFSLLKKETIYLQSA-QRVELAERQLQELKIDVKSISSLKLVNLELESEIIE 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1859 QSLTLSKLEIENLNLaqkLHENLEEMKSVMKERDNlrRVEETLKLERDQLKESLQETKARdleIQQELKTARMLSKEHKE 1938
Cdd:COG5022 911 LKKSLSSDLIENLEF---KTELIARLKKLLNNIDL--EEGPSIEYVKLPELNKLHEVESK---LKETSEEYEDLLKKSTI 982
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 1939 TVDKLREKISEKTIQISDIQKdLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVR 2017
Cdd:COG5022 983 LVREGNKANSELKNFKKELAE-LSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENN 1060
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
576-973 |
1.99e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 576 ELSSKVELLREKEDQIKKLQEYIDSqklenikmdLSYSLESIEDpkqmKQTLFDAETVALDAKRESAFLRSENLELKEKM 655
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEE---------LEEELEELEA----ELEELREELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 656 KELATTYKQMENDIQLYQSQLEAKKKMQVDLEkELQSAFNEITKLTSLIDGKVPKDLLCNLE-LEGKITDLQKELNKEVE 734
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 735 ENEALREEVILLSELKSLPSEVERLRKEIQDKSEE--LHIITSEKDKLFSEVVH---------------------KESRV 791
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERLKEARLLLLIAaaLLALLGLGGSLLSLILTiagvlflvlgllallflllarEKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 792 QGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQ------KFDSSLGALK 865
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 866 TELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTL--ITEKLQQTLEEVKTLTQEKDDLKQLQESLQI 943
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430
....*....|....*....|....*....|
gi 71061468 944 ERDQLKSDihDTVNMNIDTQEQLRNALESL 973
Cdd:COG4717 461 ELEQLEED--GELAELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
721-931 |
2.22e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 721 KITDLQKELNKEVEENEALREEVI-LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIG 799
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAaLKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 800 KTKDDLAT-TQSNYKSTDQEFQNFKTLHMDFEQKYKM------VLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKT 872
Cdd:COG4942 101 AQKEELAElLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkyLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 873 QELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEK 931
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
515-743 |
2.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 515 EQLRTEKEEMELKLKEKNDldefealERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKL 594
Cdd:COG4942 23 AEAEAELEQLQQEIAELEK-------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 595 QEYIDSQKLENIKMDLSYSLESIEDPKQMkqtLFDAETvALDAKRESAFLRSENLELKEKMKELATTYKQME---NDIQL 671
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLAL---LLSPED-FLDAVRRLQYLKYLAPARREQAEELRADLAELAalrAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71061468 672 YQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEV 743
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
837-1216 |
2.73e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 837 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQ--EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLIT 914
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 915 EKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNmniDTQEQLRNALESLKQHQETINTLKSKIS--EEVS 992
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE---ELQQRLAELEEELEEAQEELEELEEELEqlENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 993 RNLHMEENTGETK---------------------------------------------------DEFQQKMVGIDKKQDL 1021
Cdd:COG4717 237 EAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlgllallflllarekaslGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1022 EAKNTQTLTADVKDNEIIEQQRkIFSLIQEKNELQQMLESVIAEKEQLKTDLKEN------IEMTIENQEELRLLGDELK 1095
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEE-LLELLDRIEELQELLREAEELEEELQLEELEQeiaallAEAGVEDEEELRAALEQAE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1096 KQQEIVAQEKNHAIKKEGELSRTCDRLAEV-EEKLKEKsqqLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKElTL 1174
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALdEEELEEE---LEELEEELEELEEELEELREELAELEAELEQLEEDG-EL 471
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 71061468 1175 EHMETERLELAQKLNENYEEVKSITKERKVLKELQKSFETER 1216
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1430-1594 |
3.03e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1430 LQESHDEMKSVAKEKddlqrLQEVlQSESDQLKEnikeivakhlETEEELKVAHCCLKEQEETINELRVNLSEKETEIST 1509
Cdd:PRK12704 44 LEEAKKEAEAIKKEA-----LLEA-KEEIHKLRN----------EFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1510 IQKQLEAINDKLQNKIQEIYEKEEqfnikqisEVQEKVNELKQFKEHRkakdSALQSIESKMLELTNRLQESQEEIQIMI 1589
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEE--------ELEELIEEQLQELERI----SGLTAEEAKEILLEKVEEEARHEAAVLI 175
|
....*
gi 71061468 1590 KEKEE 1594
Cdd:PRK12704 176 KEIEE 180
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
514-949 |
3.06e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.27 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 514 YEQLRTEKEEMELKLK------EKNDLDEFEALERKTKKDQEMQ----LIHEISNLKNLVKHAEV-YNQDLENELSSKVE 582
Cdd:pfam05557 11 LSQLQNEKKQMELEHKrarielEKKASALKRQLDRESDRNQELQkrirLLEKREAEAEEALREQAeLNRLKKKYLEALNK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 583 LLREKEDQIKKLQEYIDS---------QKLENIKMDLSYSLESIEDPKQMKQTlfdaetvaLDAKRESAFLRSENLELKE 653
Cdd:pfam05557 91 KLNEKESQLADAREVISClknelselrRQIQRAELELQSTNSELEELQERLDL--------LKAKASEAEQLRQNLEKQQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 654 K-MKELATTYKQMENDIQLYQSQLEAKKKMQV------DLEKELQSAFNEITKLTSLIDGkvpkdllcNLELEGKITDLQ 726
Cdd:pfam05557 163 SsLAEAEQRIKELEFEIQSQEQDSEIVKNSKSelaripELEKELERLREHNKHLNENIEN--------KLLLKEEVEDLK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 727 KELNKEveenEALREEVILLS-ELKSLPSEVERLRKEIQDKSEELhiitSEKDKLFSEVVHKESRVQGLLEEIGKTKDDL 805
Cdd:pfam05557 235 RKLERE----EKYREEAATLElEKEKLEQELQSWVKLAQDTGLNL----RSPEDLSRRIEQLQQREIVLKEENSSLTSSA 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 806 ATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKE-------AQKFDSSLGALKT--ELSYKTQELQ 876
Cdd:pfam05557 307 RQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKErdgyraiLESYDKELTMSNYspQLLERIEEAE 386
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 877 EKTREVQERLNEME----QLKEQLENRDSTLQTVEREKTLIteKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLK 949
Cdd:pfam05557 387 DMTQKMQAHNEEMEaqlsVAEEELGGYKQQAQTLERELQAL--RQQESLADPSYSKEEVDSLRRKLETLELERQRLR 461
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
837-1515 |
3.36e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 837 LEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLkeQLENRDSTL---QTVEREKTLI 913
Cdd:pfam05483 70 FENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL--QFENEKVSLkleEEIQENKDLI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 914 TEK-----LQQTLEEVKTLTQEKDDLKQLQESlqiERDQLKSDIHDTVNMNIDTQEQLRNALES--------LKQHQETI 980
Cdd:pfam05483 148 KENnatrhLCNLLKETCARSAEKTKKYEYERE---ETRQVYMDLNNNIEKMILAFEELRVQAENarlemhfkLKEDHEKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 981 NTLKSKISEEVSRN--------LHMEENTGETKDEFQQKMVGIDKKQDLEAKntqTLTADVKDNEIIEQQRKIFSLIQE- 1051
Cdd:pfam05483 225 QHLEEEYKKEINDKekqvslllIQITEKENKMKDLTFLLEESRDKANQLEEK---TKLQDENLKELIEKKDHLTKELEDi 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1052 KNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLK- 1130
Cdd:pfam05483 302 KMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKi 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1131 ------EKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKV 1204
Cdd:pfam05483 382 itmelqKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1205 LKELQKSFETERDHLRG-----YIREIEATG------LQTKE---ELKIAHIHLKEHQETIDELRRSVSEKTAQIintQD 1270
Cdd:pfam05483 462 IKTSEEHYLKEVEDLKTelekeKLKNIELTAhcdkllLENKEltqEASDMTLELKKHQEDIINCKKQEERMLKQI---EN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1271 LEKSHTKLQEEIPVLHEE-----QELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIK 1345
Cdd:pfam05483 539 LEEKEMNLRDELESVREEfiqkgDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1346 SLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNEttKIVSEMEQFKPKDSALLRIEIEmlg 1425
Cdd:pfam05483 619 ALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEE--KLLEEVEKAKAIADEAVKLQKE--- 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1426 LSKRLQESHDEMKSvakekddlqrLQEVLQSESDQLKEnikeivakhlETEEELKVAHCCLKEQEETINELRVNLSEKET 1505
Cdd:pfam05483 694 IDKRCQHKIAEMVA----------LMEKHKHQYDKIIE----------ERDSELGLYKNKEQEQSSAKAALEIELSNIKA 753
|
730
....*....|
gi 71061468 1506 EISTIQKQLE 1515
Cdd:pfam05483 754 ELLSLKKQLE 763
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1146-1362 |
3.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1146 VQEEMSEMQKKIN----EIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKErkvLKELQKSFETERDHLRG 1221
Cdd:COG4942 32 LQQEIAELEKELAalkkEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE---IAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1222 YIREIEATGLQTKEELKIahihlkeHQETIDELRRSVsektaqiintQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET 1301
Cdd:COG4942 109 LLRALYRLGRQPPLALLL-------SPEDFLDAVRRL----------QYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71061468 1302 QETMNElELLTEQSTTKDSTTLARIEMERL--RLNEKFQESQEEIKSLTKERDNLKTIKEALE 1362
Cdd:COG4942 172 ERAELE-ALLAELEEERAALEALKAERQKLlaRLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1502-2275 |
4.17e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1502 EKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIEskmlELTNRLQES 1581
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLK----QLRARIEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1582 QEEIQIMIKEKEEMKRVQEALQIERDQlkentkEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQklnle 1661
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPLAAHI------KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIE----- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1662 nietENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKEnLRETITRDLEKQEELKIVHMHLKEHQETIDKLR 1741
Cdd:TIGR00618 342 ----EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1742 GIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRgivsEKTDKLSNMQKDLENSNAKLQE- 1820
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK----EREQQLQTKEQIHLQETRKKAVv 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1821 --KIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVE 1898
Cdd:TIGR00618 493 laRLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1899 ETLKLERDQLKESLQETKARDLEIQQELKtarMLSKEHKETVDKLREKISEKTIQISDIQKDLdkskdELQKKIQELQKK 1978
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTE---KLSEAEDMLACEQHALLRKLQPEQDLQDVRL-----HLQQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1979 ELQLLRvkEDVNMSHKKINEMEQLKKQFEAQNLSmqsvrmdnfQLTKKLHESLEEIRIVAKERDELRRIKESLKMERDQF 2058
Cdd:TIGR00618 645 LTALHA--LQLTLTQERVREHALSIRVLPKELLA---------SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2059 IATLREM----IARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSEMDDHYECLNRLSLDLEKEIEFQKEL 2134
Cdd:TIGR00618 714 EEYDREFneieNASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRL 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 2135 smRVKANLSLPYLQTKHIEKLFTANQrcsmefhrimkklkyvlsyvtkIKEEQHESINKFEMDFIDEVEKQKELLIKIQH 2214
Cdd:TIGR00618 794 --REEDTHLLKTLEAEIGQEIPSDED----------------------ILNLQCETLVQEEEQFLSRLEEKSATLGEITH 849
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 2215 LQqdcdvpsrelrdlklnqnmdLHIEEILKdfsesefpsiktEFQQVLSNRKEMTQFLEEW 2275
Cdd:TIGR00618 850 QL--------------------LKYEECSK------------QLAQLTQEQAKIIQLSDKL 878
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1278-1630 |
4.57e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1278 LQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTLARIE-MERLRLNEKFQESQEEIKSLTKERDNLKT 1356
Cdd:pfam17380 245 LAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERRRKLEEAEKA 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1357 IKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKpkdsALLRIEIEMLGLSKRLQESHDE 1436
Cdd:pfam17380 325 RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR----ELERLQMERQQKNERVRQELEA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1437 MKSVAKEKDDLQRLQEVLQSESDQLK---ENIKEIVAKHLETEEElkvahcclKEQEetinelRVNLSEKETeistiQKQ 1513
Cdd:pfam17380 401 ARKVKILEEERQRKIQQQKVEMEQIRaeqEEARQREVRRLEEERA--------REME------RVRLEEQER-----QQQ 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1514 LEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHRKA---KDSALQSIESKMLELTNRLQESQ-----EEI 1585
Cdd:pfam17380 462 VERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmieEERKRKLLEKEMEERQKAIYEEErrreaEEE 541
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 71061468 1586 QIMIKEKEEMKRVQEALQI---ERDQLK--ENTKEIVAKMKESQEKEYQF 1630
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKateERSRLEamEREREMMRQIVESEKARAEY 591
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1817-2011 |
4.70e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1817 KLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKDqsltlsklEIENLNLAQKLHENLEEMKSvmkerdnlrr 1896
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE--------ELEKLEKLLQLLPLYQELEA---------- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1897 veetLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQ 1976
Cdd:COG4717 137 ----LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190
....*....|....*....|....*....|....*
gi 71061468 1977 KKELQLLRVKEDVNmshkkiNEMEQLKKQFEAQNL 2011
Cdd:COG4717 213 EELEEAQEELEELE------EELEQLENELEAAAL 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
720-1321 |
4.74e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 720 GKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLfSEVV--HKESRvqgllEE 797
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA-DEVLeeHEERR-----EE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 798 IGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQE 877
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 878 KTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDqlksdihdtvn 957
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG----------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 958 mniDTQEQLRNALESLKQHQETINTLKSKISeEVSRNLHMEENTGETKDEFqqkmvgidkkqdLEAKNTQTLTADVKDNE 1037
Cdd:PRK02224 402 ---DAPVDLGNAEDFLEELREERDELREREA-ELEATLRTARERVEEAEAL------------LEAGKCPECGQPVEGSP 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1038 I---IEQQRkifsliQEKNELQQMLESVIAEKEQLKTDLkENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGE 1114
Cdd:PRK02224 466 HvetIEEDR------ERVEELEAELEDLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1115 LSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELknkeltlehmetERLELAQKLNENYEE 1194
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL------------ERIRTLLAAIADAED 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1195 vkSITKERKVLKELQKSFETERDHL---RGYIREIEATGLQTK-EELKIAHIHLKEHQETIDElrrsvsektaqiiNTQD 1270
Cdd:PRK02224 607 --EIERLREKREALAELNDERRERLaekRERKRELEAEFDEARiEEAREDKERAEEYLEQVEE-------------KLDE 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 71061468 1271 LEKSHTKLQEEIPVLHEEQELLPNVKEVSET-QETMNELELLTEQSTTKDST 1321
Cdd:PRK02224 672 LREERDDLQAEIGAVENELEELEELRERREAlENRVEALEALYDEAEELESM 723
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
895-1118 |
4.76e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 895 QLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIhDTVNMNIDT-QEQLRNALESL 973
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-AEAEAEIEErREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 974 KQHQETINTLKSKISeevSRNLhmeentgetkDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEiieqqrkifsliQEKN 1053
Cdd:COG3883 96 YRSGGSVSYLDVLLG---SESF----------SDFLDRLSALSKIADADADLLEELKADKAELE------------AKKA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 1054 ELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1118
Cdd:COG3883 151 ELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
820-1228 |
4.92e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.50 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 820 QNFKTLHMDFEQKYKMVLEENE---RMNQEIVNLSKEAQKFDSSLGALKTELsyktQELQEKTREVQERLNEMEQLKEQL 896
Cdd:pfam05557 83 KYLEALNKKLNEKESQLADAREvisCLKNELSELRRQIQRAELELQSTNSEL----EELQERLDLLKAKASEAEQLRQNL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 897 ENRDSTLQTVE-REKTLITEKLQQT--LEEVKTLTQEK---DDLKQLQESLQIERDQLKSDIHD---------------- 954
Cdd:pfam05557 159 EKQQSSLAEAEqRIKELEFEIQSQEqdSEIVKNSKSELariPELEKELERLREHNKHLNENIENklllkeevedlkrkle 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 955 ----------TVNMNIDTQEQLRNALESLKQ-HQETINT---LKSKISEEVSRNL-HMEENTGETKDEFQQKMVGIDKKQ 1019
Cdd:pfam05557 239 reekyreeaaTLELEKEKLEQELQSWVKLAQdTGLNLRSpedLSRRIEQLQQREIvLKEENSSLTSSARQLEKARRELEQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1020 DLEAKNTQTLTADVKDNEIIEQ----QRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENiemtienqEELRLLGDELK 1095
Cdd:pfam05557 319 ELAQYLKKIEDLNKKLKRHKALvrrlQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLL--------ERIEEAEDMTQ 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1096 KQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNvqEEMSEMQKKINEIENLKNELKNKELTLE 1175
Cdd:pfam05557 391 KMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK--EEVDSLRRKLETLELERQRLREQKNELE 468
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1176 hMETERLELAQKLNENYEEV-----KSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:pfam05557 469 -MELERRCLQGDYDPKKTKVlhlsmNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLED 525
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1872-1998 |
5.55e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 44.62 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1872 NLAQKLHENLEEMKSvmkERDNLRRVEETLKLERDQLKESLQETKArdlEIQQELKTARMLSKEHKETVDKLREKISEKT 1951
Cdd:smart00787 144 GLKEGLDENLEGLKE---DYKLLMKELELLNSIKPKLRDRKDALEE---ELRQLKQLEDELEDCDPTELDRAKEKLKKLL 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 71061468 1952 IQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNMSHKKINE 1998
Cdd:smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
935-1545 |
5.62e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 935 KQLQESLQIER-----DQLKsDIHDTVNMNIDTQEQLRNALESlkqHQETINTLKSKISEEVSRNLHMEENTGETKDEFQ 1009
Cdd:PRK01156 153 KILDEILEINSlernyDKLK-DVIDMLRAEISNIDYLEEKLKS---SNLELENIKKQIADDEKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1010 QKMVGIDK-KQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESViaeKEQLKTDLKENIEMTIENQEELR 1088
Cdd:PRK01156 229 NAMDDYNNlKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKN 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1089 LLGDELKKQQEIVAQeknhaIKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PRK01156 306 DIENKKQILSNIDAE-----INKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1169 NKELTLEHMETERLELAQKLNENYEEVKSITKE-RKVLKELQ---KSFETERDHLRGYIREIE--ATGLQTKEELKIAHI 1242
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEiNVKLQDISskvSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1243 HLKEhqETIDELRRSVSEKTAQIINTQD-LEKSHTKLQEEIPVLHEEQELLpNVKEVSETQETMNELELLtEQSTTKDST 1321
Cdd:PRK01156 461 TLGE--EKSNHIINHYNEKKSRLEEKIReIEIEVKDIDEKIVDLKKRKEYL-ESEEINKSINEYNKIESA-RADLEDIKI 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1322 TLARIEMERLrlneKFQESQEEIKSLTKERDNLKtikealevKHDQLKEHIRETLAKIQESQS-KQEQSLNMKEKDNETT 1400
Cdd:PRK01156 537 KINELKDKHD----KYEEIKNRYKSLKLEDLDSK--------RTSWLNALAVISLIDIETNRSrSNEIKKQLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1401 KIVSEMEQFKP-KDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLqSESDQLKENIKEIVAKHLETEEEl 1479
Cdd:PRK01156 605 EIEIGFPDDKSyIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDN- 682
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71061468 1480 kvahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLqNKIQEIYEKEEQFnIKQISEVQE 1545
Cdd:PRK01156 683 ------LKKSRKALDDAKANRARLESTIEILRTRINELSDRI-NDINETLESMKKI-KKAIGDLKR 740
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1425-1554 |
6.28e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 44.62 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1425 GLSKRLQESHDEMKS-----------VAKEKDDLQRLQEVLQSESDQLKENIKEIVAKhleTEEELKVAHCCLKEQEETI 1493
Cdd:smart00787 144 GLKEGLDENLEGLKEdykllmkelelLNSIKPKLRDRKDALEEELRQLKQLEDELEDC---DPTELDRAKEKLKKLLQEI 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1494 NELRVNLSEKETEISTIQKQLEAINDKLQ------NKIQEIYEKEEQFNIKQISEVQEKVNELKQFK 1554
Cdd:smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSelnteiAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1490-1657 |
6.62e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1490 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNI--KQISEVQEKVNEL-KQFKEHRKAKDSALQS 1566
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAlqAEIDKLQAEIAEAeAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1567 I--------------ESKM-------LELTNRLQESQ-EEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMK--E 1622
Cdd:COG3883 95 LyrsggsvsyldvllGSESfsdfldrLSALSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAelE 174
|
170 180 190
....*....|....*....|....*....|....*
gi 71061468 1623 SQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQK 1657
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
916-1651 |
7.18e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 916 KLQQTLEEVKTLTQEKDDLKQLQESlqierdqlksDIHDTVNMNIDTQEQLRNAL--ESLKQHQETINTLKSKISEEVSR 993
Cdd:COG5022 763 RYLQALKRIKKIQVIQHGFRLRRLV----------DYELKWRLFIKLQPLLSLLGsrKEYRSYLACIIKLQKTIKREKKL 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 994 NLHMEENTGETKDEFQQKMVgidkkqdlEAKNTQTLTADVKDNEIIEQQRKIFSLIQEK-NELQQMLESVIAEKEQLKTD 1072
Cdd:COG5022 833 RETEEVEFSLKAEVLIQKFG--------RSLKAKKRFSLLKKETIYLQSAQRVELAERQlQELKIDVKSISSLKLVNLEL 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1073 LKENIEMTIENQEELRLlgdELKKQQEIVAQEKNHAIKKEGELSRTCDRlaeveEKLKEKsqqlqekqqqlLNVQEEMSE 1152
Cdd:COG5022 905 ESEIIELKKSLSSDLIE---NLEFKTELIARLKKLLNNIDLEEGPSIEY-----VKLPEL-----------NKLHEVESK 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1153 MQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKElqksfeterdhlrgyiREIEATGLQ 1232
Cdd:COG5022 966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKE----------------LPVEVAELQ 1029
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1233 TkEELKIAHIHLKEHQET-IDELRRsvsektaqiintqDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQET----MNE 1307
Cdd:COG5022 1030 S-ASKIISSESTELSILKpLQKLKG-------------LLLLENNQLQARYKALKLRRENSLLDDKQLYQLEStenlLKT 1095
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1308 LELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEALEVKHDQLK-----EHIRETLAKIQES 1382
Cdd:COG5022 1096 INVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDglfweANLEALPSPPPFA 1175
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1383 QSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQEShdemksvAKEKDDLQRLQEVLQSESDQLK 1462
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKL-------ISEGWVPTEYSTSLKGFNNLNK 1248
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1463 ENIKEIVAKHLETEEELKVAHCCLKEQEEtinelrvnlsEKETEISTIQKQLEAINDKLQNkiqEIYEKEEQFNIKQISE 1542
Cdd:COG5022 1249 KFDTPASMSNEKLLSLLNSIDNLLSSYKL----------EEEVLPATINSLLQYINVGLFN---ALRTKASSLRWKSATE 1315
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1543 VQEKVNELKQFKEHRKAKDSALQSIEskmleltnrLQESQEEIQIMIKEKEEMKRV----QEALQIERDQLKEN------ 1612
Cdd:COG5022 1316 VNYNSEELDDWCREFEISDVDEELEE---------LIQAVKVLQLLKDDLNKLDELldacYSLNPAEIQNLKSRydpadk 1386
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 71061468 1613 ----TKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKE 1651
Cdd:COG5022 1387 ennlPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEK 1429
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
790-1228 |
8.09e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 790 RVQGLLEEIGKTKDDLATTQSNYkstdQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVnLSKEAQKFdSSLGALKTElS 869
Cdd:PRK04863 234 DMEAALRENRMTLEAIRVTQSDR----DLFKHLITESTNYVAADYMRHANERRVHLEEA-LELRRELY-TSRRQLAAE-Q 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 870 YKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLI----------TEKLQQTLEEVKTLTQEKDDLKQLQE 939
Cdd:PRK04863 307 YRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIeryqadleelEERLEEQNEVVEEADEQQEENEARAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 940 SLQIERDQLKSDIHDtVNMNIDTQE----QLRNALESLKQHQE-------TINTLKSKISEEVSRnlhmEENTGETKDEF 1008
Cdd:PRK04863 387 AAEEEVDELKSQLAD-YQQALDVQQtraiQYQQAVQALERAKQlcglpdlTADNAEDWLEEFQAK----EQEATEELLSL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1009 QQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESViaekEQLKTDLKEnIEMTIENQEELR 1088
Cdd:PRK04863 462 EQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL----QQLRMRLSE-LEQRLRQQQRAE 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1089 LLGDELKKQqeivaqeknhaikkegeLSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PRK04863 537 RLLAEFCKR-----------------LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1169 NKElTLEHMETERLE-LAQKLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEA 1228
Cdd:PRK04863 600 ARA-PAWLAAQDALArLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
501-2021 |
9.78e-04 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 44.82 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 501 NSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDL------- 573
Cdd:PTZ00440 183 NVRKTLYDEKFNEYKNKKEAFYNCLKNKKEDYDKKIKKINNEIRKLLKNIKCTGNMCKTDTYVDMVELYLLRVnevpsnn 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 574 -ENELSSKVELLREKEDQIKKLQEYIDSQK----------------------LENIKMDLSY--SLESIEDPKQMKQT-- 626
Cdd:PTZ00440 263 yDNYLNRAKELLESGSDLINKIKKELGDNKtiysinfiqeeigdiikrynfhLKKIEKGKEYikRIQNNNIPPQVKKDel 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 627 ---LFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQ------LYQSQLEAKKKMQVDLEKELQSAFNEI 697
Cdd:PTZ00440 343 kkkYFESAKHYASFKFSLEMLSMLDSLLIKKEKILNNLFNKLFGDLKekietlLDSEYFISKYTNIISLSEHTLKAAEDV 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 698 TKLTSlidgKVPKDLLCNLELEgkITDLQKELNKEVEE-NEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSE 776
Cdd:PTZ00440 423 LKENS----QKIADYALYSNLE--IIEIKKKYDEKINElKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNY 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 777 KDKlfsevvhkesrVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVleenERMNQEIVNLSKEAQK 856
Cdd:PTZ00440 497 QEK-----------VDELLQIINSIKEKNNIVNNNFKNIEDYYITIEGLKNEIEGLIELI----KYYLQSIETLIKDEKL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 857 FDSslgaLKTELSYKTQELQEKTrevqERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDlKQ 936
Cdd:PTZ00440 562 KRS----MKNDIKNKIKYIEENV----DHIKDIISLNDEIDNIIQQIEELINEALFNKEKFINEKNDLQEKVKYILN-KF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 937 LQESLQIERDQLKSDIHDTVNM--NIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME-ENTGETKDEFQQKMV 1013
Cdd:PTZ00440 633 YKGDLQELLDELSHFLDDHKYLyhEAKSKEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKElQNLLSLKENIIKKQL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1014 GIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKE----------------NI 1077
Cdd:PTZ00440 713 NNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDKDLPDgkntyeeflqykdtilNK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1078 EMTIENQ-----EELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEE--KLKEKSQQLQEKQQQLLNVQEEM 1150
Cdd:PTZ00440 793 ENKISNDinilkENKKNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPTEDEnlNLKELEKEFNENNQIVDNIIKDI 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1151 SEMQKKINEIENLKNELK---NKELTLEHMETERLELAQKLNENYEEVKS---ITKERK-----VLKELQKSFETE---- 1215
Cdd:PTZ00440 873 ENMNKNINIIKTLNIAINrsnSNKQLVEHLLNNKIDLKNKLEQHMKIINTdniIQKNEKlnllnNLNKEKEKIEKQlsdt 952
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1216 ---------------RDHLRGYIREIEATGLQTKEELKIAHIHLKEHQETIDELRRSVSEKTAQIINTQDLE-------- 1272
Cdd:PTZ00440 953 kinnlkmqiektleyYDKSKENINGNDGTHLEKLDKEKDEWEHFKSEIDKLNVNYNILNKKIDDLIKKQHDDiielidkl 1032
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1273 ------KSHTKLQEEIPVLHEEQELLP-----NVKEVSETQETMNELELLTEQSTT---KDSTTLARIEMERLRLNEKFQ 1338
Cdd:PTZ00440 1033 ikekgkEIEEKVDQYISLLEKMKTKLSsfhfnIDIKKYKNPKIKEEIKLLEEKVEAllkKIDENKNKLIEIKNKSHEHVV 1112
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1339 ESQEEIKSLT----KERDNLKTIKEALEVKHDQL--KEHIRETLAKIQESQSKQEQSL------NMKEKDNETTKIVSEM 1406
Cdd:PTZ00440 1113 NADKEKNKQTehynKKKKSLEKIYKQMEKTLKELenMNLEDITLNEVNEIEIEYERILidhiveQINNEAKKSKTIMEEI 1192
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1407 EQFKPKdsallrIEIEMLGLSKRLQESHDEMKsvakekddlqrlQEVLQSESDQLKENIKEIVaKHLETEEELKVAHCCL 1486
Cdd:PTZ00440 1193 ESYKKD------IDQVKKNMSKERNDHLTTFE------------YNAYYDKATASYENIEELT-TEAKGLKGEANRSTNV 1253
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1487 KEQEETINELRVNLSEKETEISTIQKQLEAINDK----LQNKIQEI-------------YEKEEQFNIKQISEVQEKV-N 1548
Cdd:PTZ00440 1254 DELKEIKLQVFSYLQQVIKENNKMENALHEIKNMyeflISIDSEKIlkeilnstkkaeeFSNDAKKELEKTDNLIKQVeA 1333
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1549 ELKQFKEHRKAKDSAL---------QSIESKMLELTNRLQESQEEIQIMIKEKEemKRVQEALQIERDQLKENTKEIVAK 1619
Cdd:PTZ00440 1334 KIEQAKEHKNKIYGSLedkqiddeiKKIEQIKEEISNKRKEINKYLSNIKSNKE--KCDLHVRNASRGKDKIDFLNKHEA 1411
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1620 MKESQEKEYQFLKMT-AVNETQEKMCEIEHLKEQFETQKLNLENIETEnirLTQILHENL---------EEMRSVTKERD 1689
Cdd:PTZ00440 1412 IEPSNSKEVNIIKITdNINKCKQYSNEAMETENKADENNDSIIKYEKE---ITNILNNSSilgkktkleKKKKEATNIMD 1488
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1690 DLRSVEETLKVERDQLKENLRETITRDLEKQEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEhsNDALKAQD 1769
Cdd:PTZ00440 1489 DINGEHSIIKTKLTKSSEKLNQLNEQPNIKREGDVLNNDKSTIAYETIQYNLGRVKHNLLNILNIKDEIE--TILNKAQD 1566
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1770 LkiqeELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNA---KLQEKIQELKANEHQLITLKK--------D 1838
Cdd:PTZ00440 1567 L----MRDISKISKIVENKNLENLNDKEADYVKYLDNILKEKQLMEAeykKLNEIYSDVDNIEKELKKHKKnyeiglleK 1642
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1839 VNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQ-KLHENLEEMKSVMKERDNlrRVEETLKLERDQLKESL----- 1912
Cdd:PTZ00440 1643 VIEINKNIKLYMDSTKESLNSLVNNFSSLFNNFYLNKyNINENLEKYKKKLNEIYN--EFMESYNIIQEKMKEVSnddvd 1720
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1913 -QETKARDLEIQQELKTARMLSKEHK------------ETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQ--K 1977
Cdd:PTZ00440 1721 yNEAKTLREEAQKEEVNLNNKEEEAKkylndikkqesfRFILYMKEKLDELSKMCKQQYNIVDEGYNYIKKKIEYIKtlN 1800
|
1690 1700 1710 1720
....*....|....*....|....*....|....*....|....
gi 71061468 1978 KELQLLRVKEDVNMSHKKINEMEQLKKQFEAQNLSMQSVRMDNF 2021
Cdd:PTZ00440 1801 DENNLSDSLNQAEDKNKEVANLTHYTNKNEAKNLLGHVVKSANF 1844
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
346-798 |
1.09e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 346 KRYRKEIMDLKKQLEEVSLETRAQAMEKDQLAQ-----------LL-----EEKDL-LQKVQNEKIENLTrmlvTSSSLT 408
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQesgnlddqlqkLLadlhkREKELsLEKEQNKRLWDRD----TGNSIT 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 409 LQ-------------QELKAKRKRRVTWCLGKINKMKNSNYADQFNIpTNITTKTHKL--SINLLREIDESVCSESDVFS 473
Cdd:pfam15921 414 IDhlrrelddrnmevQRLEALLKAMKSECQGQMERQMAAIQGKNESL-EKVSSLTAQLesTKEMLRKVVEELTAKKMTLE 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 474 NTLDTLSEIEWNPATKLLNQENIESELNSLRADYDNLVLDYEQLRTEKEEMelklkeKNDLDEFEALE-RKTKKDQEMQL 552
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL------RNVQTECEALKlQMAEKDKVIEI 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 553 I-HEISNLKNLVKH-------AEVYNQDLENELSSK------VELLREKED-QIKKLQEYIDSQKLENIKM--DLSYSLE 615
Cdd:pfam15921 567 LrQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRrlelqeFKILKDKKDaKIRELEARVSDLELEKVKLvnAGSERLR 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 616 SIEDPKQMK-QTLFDAETVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKElqsaf 694
Cdd:pfam15921 647 AVKDIKQERdQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGS----- 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 695 neitkltsliDGKVPKDLLcnlelegkitDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKEIQDK-SEELHII 773
Cdd:pfam15921 722 ----------DGHAMKVAM----------GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKlSQELSTV 781
|
490 500
....*....|....*....|....*
gi 71061468 774 TSEKDKLFSEVVHKESRVQGLLEEI 798
Cdd:pfam15921 782 ATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
503-990 |
1.10e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 503 LRADYDNLVLDYEQLRTEKE--EMELKLKEKNDLDEFEALERKTKKdqemqlihEISNLKNLVKHAEVYNQDLENELSSK 580
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAEnaRLEMHFKLKEDHEKIQHLEEEYKK--------EINDKEKQVSLLLIQITEKENKMKDL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 581 VELLREKEDQIKKLQEYIDSQKlENIKmdlsyslESIEDPKQMKQTLFDaetvaldakresaflrsenleLKEKMKELAT 660
Cdd:pfam05483 260 TFLLEESRDKANQLEEKTKLQD-ENLK-------ELIEKKDHLTKELED---------------------IKMSLQRSMS 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 661 TYKQMENDIQLyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPKDLLCNLElegkitDLQKELNKEVEENEalR 740
Cdd:pfam05483 311 TQKALEEDLQI-----ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLE------ELLRTEQQRLEKNE--D 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 741 EEVILLSELKSLPSEVERLRKEIQDKS---EELHIITSEKDKLFSEvvhkESRVQGLLEEIGKTKDDLA----TTQSNYK 813
Cdd:pfam05483 378 QLKIITMELQKKSSELEEMTKFKNNKEvelEELKKILAEDEKLLDE----KKQFEKIAEELKGKEQELIfllqAREKEIH 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 814 STDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLK 893
Cdd:pfam05483 454 DLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERML 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 894 EQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNmniDTQEQLRNALESL 973
Cdd:pfam05483 534 KQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCN---NLKKQIENKNKNI 610
|
490
....*....|....*..
gi 71061468 974 KQHQETINTLKSKISEE 990
Cdd:pfam05483 611 EELHQENKALKKKGSAE 627
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
470-1101 |
1.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 470 DVFSNTLDTLSEIEWNPATKllNQENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNdldefEALERKTKKDQE 549
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEK--EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAD-----EVLEEHEERREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 550 MQ-LIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQ-----EYIDSQKLENIKMDLSYSLESIEDPKQM 623
Cdd:PRK02224 253 LEtLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaglDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 624 KQTLFDAETVALDAKRESAF-LRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTS 702
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADdLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAED 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 703 LIDgkvpkDLLCNL-ELEGKITDLQ---KELNKEVEENEALREEvillselkslpsevERLRKEIQDKSEELHIITSEKD 778
Cdd:PRK02224 413 FLE-----ELREERdELREREAELEatlRTARERVEEAEALLEA--------------GKCPECGQPVEGSPHVETIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 779 KlfsevvhkesrvqgllEEIGKTKDDLATTQsnykstdqefqnfktlhmdfeqkykmvlEENERMNQEIvNLSKEAQKFD 858
Cdd:PRK02224 474 R----------------ERVEELEAELEDLE----------------------------EEVEEVEERL-ERAEDLVEAE 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 859 SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:PRK02224 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 939 ESLQIERDQLksdihdtvnmniDTQEQLRNALESLKQHQETINtlkskiseevsrnlhmEENTgETKDEFQQKMvgiDKK 1018
Cdd:PRK02224 589 ESLERIRTLL------------AAIADAEDEIERLREKREALA----------------ELND-ERRERLAEKR---ERK 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1019 QDLEAKntqtltadvKDNEIIEQQRkifsliQEKNELQQMLESV---IAEKEQLKTDLKENIEMTIENQEELRLLGDELK 1095
Cdd:PRK02224 637 RELEAE---------FDEARIEEAR------EDKERAEEYLEQVeekLDELREERDDLQAEIGAVENELEELEELRERRE 701
|
....*.
gi 71061468 1096 KQQEIV 1101
Cdd:PRK02224 702 ALENRV 707
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1050-1290 |
1.19e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1050 QEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKL 1129
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1130 KEKsqqlqekqqqLLNVQEEMSEMQkKINEIENLKNELKNKEltLEHMETERLELAQKLNENYEEVKSITKERKVLKELQ 1209
Cdd:COG4942 100 EAQ----------KEELAELLRALY-RLGRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1210 KSFETERDHLRGYIREIEatglQTKEELKIAhihLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQ 1289
Cdd:COG4942 167 AELEAERAELEALLAELE----EERAALEAL---KAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEA 236
|
.
gi 71061468 1290 E 1290
Cdd:COG4942 237 A 237
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1790-1949 |
1.20e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1790 IDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD--QSLTLSKlE 1867
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK-E 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1868 IENLNLAQKLHEnlEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARmlsKEHKETVDKLREKI 1947
Cdd:COG1579 98 IESLKRRISDLE--DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL---EELEAEREELAAKI 172
|
..
gi 71061468 1948 SE 1949
Cdd:COG1579 173 PP 174
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1847-2072 |
1.22e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.35 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1847 SEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKE-RDNLRRVEETLKLERDQLKESLQETKARdleiQQE 1925
Cdd:pfam05557 9 ARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQElQKRIRLLEKREAEAEEALREQAELNRLK----KKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1926 LKTARMLSKEHKETVDKLREKISEKTIQISDIQKdldkskdELQKKIQELQKKELQLLRVKEDVNMSHKKINEMEQLKKQ 2005
Cdd:pfam05557 85 LEALNKKLNEKESQLADAREVISCLKNELSELRR-------QIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 2006 FEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKEslkMERDqfIATLREMIARDRQN 2072
Cdd:pfam05557 158 LEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPE---LEKE--LERLREHNKHLNEN 219
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1406-1838 |
1.23e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1406 MEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCC 1485
Cdd:COG5185 88 FLKEKKLDTKILQEYVNSLIKLPNYEWSADILISLLYLYKSEIVALKDELIKVEKLDEIADIEASYGEVETGIIKDIFGK 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1486 LKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQ 1565
Cdd:COG5185 168 LTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSE-STLLEKAKEIINIEEALKGFQDPESELE 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1566 SIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCE 1645
Cdd:COG5185 247 DLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQE 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1646 IEHLKEQFETQKLNL-ENIETENIRLTQILHENLEEMRSVTKERdDLRSVEETLKVERDQLKENLRE--TITRDLEK--Q 1720
Cdd:COG5185 327 LEESKRETETGIQNLtAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFKDTIESTKESldEIPQNQRGyaQ 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1721 EELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRI-----AHMHLKEQQETIDKLRG 1795
Cdd:COG5185 406 EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSrleeaYDEINRSVRSKKEDLNE 485
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 71061468 1796 IVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKD 1838
Cdd:COG5185 486 ELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKD 528
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
737-1229 |
1.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 737 EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVhkESRVQGLLEEIGKTKDDLATTQSNYKSTD 816
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 817 QEFQNFKTLHMDFEQKYKMVLE-ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQ 895
Cdd:COG4913 323 EELDELEAQIRGNGGDRLEQLErEIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 896 LENRDSTLQTverektliteKLQQTLEEVKTLTQEKDDLKQLQ-----ESLQIeRDQLKSDI-HDTVNMNI--------D 961
Cdd:COG4913 403 LEEALAEAEA----------ALRDLRRELRELEAEIASLERRKsnipaRLLAL-RDALAEALgLDEAELPFvgelievrP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 962 TQEQLRNALESL---------------KQHQETINTLKSK---ISEEVSRNLHMEENTGETKDEFQQKMVGIDKK----- 1018
Cdd:COG4913 472 EEERWRGAIERVlggfaltllvppehyAAALRWVNRLHLRgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPfrawl 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1019 -------------QDLEA-KNTQ---TLTADVKDN----------EIIEQ-------QRKIFSLIQEKNELQQMLESVIA 1064
Cdd:COG4913 552 eaelgrrfdyvcvDSPEElRRHPraiTRAGQVKGNgtrhekddrrRIRSRyvlgfdnRAKLAALEAELAELEEELAEAEE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1065 EKEQLKTDLKENiemtienQEELRLLGDELKKQQEIV----AQEKNHAIKKE-GELSRTCDRLAEVEEKLKEKSQQLQEK 1139
Cdd:COG4913 632 RLEALEAELDAL-------QERREALQRLAEYSWDEIdvasAEREIAELEAElERLDASSDDLAALEEQLEELEAELEEL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1140 QQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEhmETERLELAQKLNENYEEVKSITKERKVLKELQKSFETERDHL 1219
Cdd:COG4913 705 EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE--DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL 782
|
570
....*....|
gi 71061468 1220 RGYIREIEAT 1229
Cdd:COG4913 783 NRAEEELERA 792
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
737-992 |
1.35e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 737 EALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKdklfsevvhkESRVQGLLEEIGKTKDDlattqsnykstd 816
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL----------ESRVAELKEELRQSREK------------ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 817 qefqnfktlHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKtelsyktQELQEKTREVQERLNEMEQLKEQL 896
Cdd:pfam07888 96 ---------HEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELE-------EDIKTLTQRVLERETELERMKERA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 897 ENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDI----------HDTVNMNIDTQEQL 966
Cdd:pfam07888 160 KKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTIttltqklttaHRKEAENEALLEEL 239
|
250 260
....*....|....*....|....*.
gi 71061468 967 RNALESLKQHQETINTLKSKISEEVS 992
Cdd:pfam07888 240 RSLQERLNASERKVEGLGEELSSMAA 265
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1307-1589 |
1.57e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1307 ELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKER-DNLKTIKEALEVKHDQLKEHIRETLAKIQESQSK 1385
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESsKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1386 QEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKdDLQRLQEVLQSESDQLKENI 1465
Cdd:COG5185 312 ESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1466 KEIVAKHLETEEELKVAhccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQE 1545
Cdd:COG5185 391 ESLDEIPQNQRGYAQEI---LATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE 467
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 71061468 1546 KVNELKQFKEHRKAK-DSALQSIESKMLELTNRLQESQEEIQIMI 1589
Cdd:COG5185 468 AYDEINRSVRSKKEDlNEELTQIESRVSTLKATLEKLRAKLERQL 512
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
759-1091 |
1.64e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 759 LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLE 838
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 839 ENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKtLITEKLQ 918
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE-AEQALDE 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 919 QTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHME 998
Cdd:COG4372 188 LLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAI 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 999 ENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIE 1078
Cdd:COG4372 268 LVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLL 347
|
330
....*....|...
gi 71061468 1079 MTIENQEELRLLG 1091
Cdd:COG4372 348 VGLLDNDVLELLS 360
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
1820-2117 |
1.65e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 43.53 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1820 EKIQELKANEHQLITL-KKDVNETQKKVSEMEQLKKQIKDQSLTLSKLeieNLNLAQKLHENLEEMKSVMKERDNL-RRV 1897
Cdd:pfam04108 3 SSAQDLCRWANELLTDaRSLLEELVVLLAKIAFLRRGLSVQLANLEKV---REGLEKVLNELKKDFKQLLKDLDAAlERL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1898 EETLklerdqlkESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQK 1977
Cdd:pfam04108 80 EETL--------DKLRNTPVEPALPPGEEKQKTLLDFIDEDSVEILRDALKELIDELQAAQESLDSDLKRFDDDLRDLQK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1978 KELQLLRVKEDVNMSHKKINEMEQLKKQFeAQNLSM---------------QSVRMDNFQLTKKLHESLEEIRIVAKER- 2041
Cdd:pfam04108 152 ELESLSSPSESISLIPTLLKELESLEEEM-ASLLESltnhydqcvtavkltEGGRAEMLEVLENDARELDDVVPELQDRl 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 2042 DELRRIKESLKMERDQFIATLREMIARDRQNHQVKpeKRLLSDG--QQHLTESLREKCSRIKELLKRYSEMDDHYECL 2117
Cdd:pfam04108 231 DEMENNYERLQKLLEQKNSLIDELLSALQLIAEIQ--SRLPEYLaaLKEFEERWEEEKETIEDYLSELEDLREFYEGF 306
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
849-977 |
1.77e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 849 NLSKEAQKFD---SSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLEnrdstlqtvEREKTLITEKLQQTLEEVK 925
Cdd:PRK00409 510 LIGEDKEKLNeliASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ---------EEEDKLLEEAEKEAQQAIK 580
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 71061468 926 TLTQEKDD-LKQLQESLQIERDQLKSdiHDTvnmnIDTQEQLRNALESLKQHQ 977
Cdd:PRK00409 581 EAKKEADEiIKELRQLQKGGYASVKA--HEL----IEARKRLNKANEKKEKKK 627
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1428-2106 |
1.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1428 KRLQESHDEMKSVAKEKDDLQRL------------QEVLQSESDQLKENIKEIVAKHLETEEELKvahcclkEQEETINE 1495
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLraalrlwfaqrrLELLEAELEELRAELARLEAELERLEARLD-------ALREELDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1496 LRVNLSEKETE-ISTIQKQLEAINDKLQNKIQ--EIYEKE-EQFNIKQISEVQEKVNELKQFKEHRKAKDSALQSIESKM 1571
Cdd:COG4913 328 LEAQIRGNGGDrLEQLEREIERLERELEERERrrARLEALlAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1572 LELTNRLQESQEEIQIMIKEKEEMKRVQ----EALQIERDQLKENTKEIVAKM---------KESQEK------------ 1626
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaiervlggf 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1627 --------EY--QFLKmtAVNETqekmceieHLKEQFETQKLNLENIETENIR-----LTQIL----HENLEEMRSVTKE 1687
Cdd:COG4913 488 altllvppEHyaAALR--WVNRL--------HLRGRLVYERVRTGLPDPERPRldpdsLAGKLdfkpHPFRAWLEAELGR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1688 RDDLRSVEETlkverDQLKeNLRETITRD-LEKQE----ELKIVHMHLKEH---QETIDKLRgivsEKTNEISNMQKDLE 1759
Cdd:COG4913 558 RFDYVCVDSP-----EELR-RHPRAITRAgQVKGNgtrhEKDDRRRIRSRYvlgFDNRAKLA----ALEAELAELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1760 HSNDALKA--QDLKIQEELRIAHMHLKEQQETIDKLRGIVSEkTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKK 1837
Cdd:COG4913 628 EAEERLEAleAELDALQERREALQRLAEYSWDEIDVASAERE-IAELEAELERLDASSDDLAALEEQLEELEAELEELEE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1838 DVNETQKKVSEMEQLKKQIKDQsltlskleienlnlaqklhenLEEMKSVMKERDNLRRVEETLKLErDQLKESLQETKA 1917
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEE---------------------LDELQDRLEAAEDLARLELRALLE-ERFAAALGDAVE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1918 RDL--EIQQELKTARmlsKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQK-KELQLLRVKEdvnmshk 1994
Cdd:COG4913 765 RELreNLEERIDALR---ARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLPEYEE------- 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1995 kinEMEQLKKQFEAQNLSmqsvrmdnfQLTKKLHESLEEIrivakeRDELRRIKESLKM---ERDQFIatlrEMIARDRQ 2071
Cdd:COG4913 835 ---RFKELLNENSIEFVA---------DLLSKLRRAIREI------KERIDPLNDSLKRipfGPGRYL----RLEARPRP 892
|
730 740 750
....*....|....*....|....*....|....*....
gi 71061468 2072 NHQVKPEKRLL---SDGQQHLTESLREK-CSRIKELLKR 2106
Cdd:COG4913 893 DPEVREFRQELravTSGASLFDEELSEArFAALKRLIER 931
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1580-1828 |
2.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1580 ESQEEIQIMIKEKEEMKRVQEALQIERDQLkentkEIVAKMKESQEkEYQflkmtavnETQEKMCEIEHLKEqfetqKLN 1659
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQI-----ELLEPIRELAE-RYA--------AARERLAELEYLRA-----ALR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1660 LENIETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERDQLKENLRETITRDLEK-QEELKivhmHLKEHQETID 1738
Cdd:COG4913 283 LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlEREIE----RLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1739 KLRGIVSEKTNEIsnmQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRgivsektDKLSNMQKDLEnsnaKL 1818
Cdd:COG4913 359 RRRARLEALLAAL---GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE-------AALRDLRRELR----EL 424
|
250
....*....|
gi 71061468 1819 QEKIQELKAN 1828
Cdd:COG4913 425 EAEIASLERR 434
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1050-1255 |
2.08e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1050 QEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKL 1129
Cdd:pfam07888 41 QERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1130 -KEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERLELAQKLNENYEEVKSITKERKVLKEL 1208
Cdd:pfam07888 121 lAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNS 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 71061468 1209 QKSFETERDHLRGYIReieatglQTKEELKIAHIHLKEHQETIDELR 1255
Cdd:pfam07888 201 LAQRDTQVLQLQDTIT-------TLTQKLTTAHRKEAENEALLEELR 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
499-951 |
2.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 499 ELNSLRADYDNLVLDYEQLRTEKEEMELKLKE-KNDLDEFEALER-----KTKKDQEMQLIHEISNLKNLVKHAEVYnQD 572
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEElREELEKLEKLLQllplyQELEALEAELAELPERLEELEERLEEL-RE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 573 LENELSSKVELLREKEDQIKKLQEYIDSQKLENIKmdlsyslesiedpkqmkqtlfdaetvalDAKRESAFLRSENLELK 652
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEELQ----------------------------DLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 653 EKMKELATTYKQMENDIQLYQSQLEAKKkmqvdLEKELQSAFNEITKLTSLIDGKVPKDLLCNLELE---------GKIT 723
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAA-----LEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlGLLA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 724 DLQKELNKEVEENEALREEVILLSELKSLpseverLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKD 803
Cdd:COG4717 288 LLFLLLAREKASLGKEAEELQALPALEEL------EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 804 DLAtTQSNYKSTDQEFQNFK-TLHMDFEQKYKMvLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKT--QELQEKTR 880
Cdd:COG4717 362 ELQ-LEELEQEIAALLAEAGvEDEEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEE 439
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71061468 881 EVQERLNEMEQLKEQLENRDSTLQTVEREKTL--ITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSD 951
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1329-1530 |
2.17e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1329 ERLRLNEKFQESQEEIKS---------LTKERDNLKTIKEALEVKHDQLKEHIREtlakiQESQSKQEQSLNMKekdneT 1399
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGeniarkqnkYDELVEEAKTIKAEIEELTDELLNLVMD-----IEDPSAALNKLNTA-----A 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1400 TKIVSEMEQFKpKDSALLRIEIE----MLGLS---KRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEI--VA 1470
Cdd:PHA02562 265 AKIKSKIEQFQ-KVIKMYEKGGVcptcTQQISegpDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLleLK 343
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1471 KHLETEE-ELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYE 1530
Cdd:PHA02562 344 NKISTNKqSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
842-998 |
2.19e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 842 RMNQEIVNLSKEAQKFDSSLGALKTELSyktqELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITE--KLQQ 919
Cdd:COG3206 202 RQKNGLVDLSEEAKLLLQQLSELESQLA----EARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEA 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 920 TLEEVKTLTQE--------KDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSKISE-- 989
Cdd:COG3206 278 ELAELSARYTPnhpdvialRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRle 357
|
170
....*....|..
gi 71061468 990 ---EVSRNLHME 998
Cdd:COG3206 358 revEVARELYES 369
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1289-1947 |
2.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1289 QELLPNVKEVSETQETM----NELELLTE-----QSTTKDSTTLARIEMERLRLN-----EKFQESQEEIKSLTKERDNL 1354
Cdd:COG4913 228 DALVEHFDDLERAHEALedarEQIELLEPirelaERYAAARERLAELEYLRAALRlwfaqRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1355 KTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKivSEMEQfkpkDSALLRIEIEMLGLSkrLQESH 1434
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL--EERER----RRARLEALLAALGLP--LPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1435 DEMKSVAKEkddLQRLQEVLQSESDQLKENIKEIVAKHLETEEElkvahccLKEQEETINELR---VNLSEKETEIstiq 1511
Cdd:COG4913 380 EEFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLRRE-------LRELEAEIASLErrkSNIPARLLAL---- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1512 kqLEAINDKLQNKIQ---------EIYEKEEQ-------------FNI----KQISEVQEKVNELKQ------FKEHRKA 1559
Cdd:COG4913 446 --RDALAEALGLDEAelpfvgeliEVRPEEERwrgaiervlggfaLTLlvppEHYAAALRWVNRLHLrgrlvyERVRTGL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1560 KDSALQSIESKML--ELTNRLQESQEEIQIMIKEK---------EEMKRVQEALQIERdQLKENtKEIVAKMKESQEKEY 1628
Cdd:COG4913 524 PDPERPRLDPDSLagKLDFKPHPFRAWLEAELGRRfdyvcvdspEELRRHPRAITRAG-QVKGN-GTRHEKDDRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1629 QFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIETEnIRLTQILHENLEEMRSVTKERDDLRSVEETLkVERDQLKEN 1708
Cdd:COG4913 602 YVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASAEREI-AELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1709 LRETiTRDLEK-QEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIahmHLKEQ- 1786
Cdd:COG4913 680 LDAS-SDDLAAlEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA---LLEERf 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1787 -QETIDKLRGIVSEK-TDKLSNMQKDLENSNAKLQEKIQELK----ANEHQLITLKKDVNETQK-----KVSEMEQLKKQ 1855
Cdd:COG4913 756 aAALGDAVERELRENlEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLAlldrlEEDGLPEYEER 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1856 IKDQsltLSKLEIENL-NLAQKLHENLEEMKSVMKE-RDNLRRVE----ETLKLE-RDQLKESLQE--TKARDLEIQQEL 1926
Cdd:COG4913 836 FKEL---LNENSIEFVaDLLSKLRRAIREIKERIDPlNDSLKRIPfgpgRYLRLEaRPRPDPEVREfrQELRAVTSGASL 912
|
730 740
....*....|....*....|.
gi 71061468 1927 KTARmLSKEHKETVDKLREKI 1947
Cdd:COG4913 913 FDEE-LSEARFAALKRLIERL 932
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1645-1858 |
2.45e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1645 EIEHLKEQFETQKLNLENIETENirltqilHENLEEMRSVTkerDDLRSVEETLKVERDQLKENLREtITRDLEKQEE-- 1722
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKN-------GENIARKQNKY---DELVEEAKTIKAEIEELTDELLN-LVMDIEDPSAal 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1723 -----------------LKIVHMHlKEHQE------TIDKLRGIVSEKTNEISNMQKDLEHSNDALKaQDLKIQEELRIA 1779
Cdd:PHA02562 258 nklntaaakikskieqfQKVIKMY-EKGGVcptctqQISEGPDRITKIKDKLKELQHSLEKLDTAID-ELEEIMDEFNEQ 335
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 1780 HMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD 1858
Cdd:PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1082-1292 |
2.48e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1082 ENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRLAEVEEKLKEksqqlqekqqqllnVQEEMSEMQKKINEIE 1161
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA--------------LEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1162 NLKNELKNKELTLEHMETERLELAQKLNE--------NYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQT 1233
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 71061468 1234 KEELKIAHIHLKEHQETIDELRRSVSEKTAQIintQDLEKSHTKLQEEIPVLHEEQELL 1292
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEEL 225
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1879-2045 |
2.80e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1879 ENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQ 1958
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1959 -----KDLDKSKDELQKKIQELQKKELQLLRVKEDVNmshKKINEMEQLKKQFEAQNLSMQSvrmdnfQLTKKLHESLEE 2033
Cdd:COG1579 87 nnkeyEALQKEIESLKRRISDLEDEILELMERIEELE---EELAELEAELAELEAELEEKKA------ELDEELAELEAE 157
|
170
....*....|..
gi 71061468 2034 IRIVAKERDELR 2045
Cdd:COG1579 158 LEELEAEREELA 169
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
518-1350 |
3.10e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 518 RTEKEEMELKLKEKNDLDEFEALERKTKKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSK-VELLREKEDQIKKLQE 596
Cdd:TIGR00606 229 KEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKmEKVFQGTDEQLNDLYH 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 597 YIDS--QKLENIKMDLSYSLESIEDPKQM---KQTLFDAE--TVALDAKRESAFLRSENLELKEKMKEL--------ATT 661
Cdd:TIGR00606 309 NHQRtvREKERELVDCQRELEKLNKERRLlnqEKTELLVEqgRLQLQADRHQEHIRARDSLIQSLATRLeldgfergPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 662 YKQMENDIQLYQSQLEAKKKMQVDLEKELQSafNEITKLTSLIDGKVPKDLLcnleleGKITDLQKE-LNKEVEENEALR 740
Cdd:TIGR00606 389 ERQIKNFHTLVIERQEDEAKTAAQLCADLQS--KERLKQEQADEIRDEKKGL------GRTIELKKEiLEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 741 eevillSELKSLPSEVER-LRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEF 819
Cdd:TIGR00606 461 ------KELQQLEGSSDRiLELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTR 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 820 QNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAqKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENR 899
Cdd:TIGR00606 535 TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 900 dstlqtvEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL-----KSDIHDTVNMNIDTQEQ-----LRNA 969
Cdd:TIGR00606 614 -------LESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRamlagATAVYSQFITQLTDENQsccpvCQRV 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 970 LESLKQHQETINTLKSKI---------SEEVSRNLHMEENTGETKDEFQQKMVGIDKKQ--DLEAKNTQTLTADVKDNEI 1038
Cdd:TIGR00606 687 FQTEAELQEFISDLQSKLrlapdklksTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEipELRNKLQKVNRDIQRLKND 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1039 IEQQRKIFSLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLL-GDELKKQQEIVAQEKNHAIKK---EGE 1114
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTvvsKIE 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1115 LSRTC------------DRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELKNKELTLEHMETERL 1182
Cdd:TIGR00606 847 LNRKLiqdqqeqiqhlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1183 ELaqkLNENYEEVKSITKERKVLKELQKSFETERDHLRGYIREIEATGLQTKE-ELKIAHIHLKE---HQETIDELRRSV 1258
Cdd:TIGR00606 927 EL---ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKEtELNTVNAQLEEcekHQEKINEDMRLM 1003
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1259 SektaQIINTQDLEKSHtkLQEEIPVLHEEQELLPNVKEVSETQETMNELELL-TEQSTTKDSTTLARIEMERLRLNEKF 1337
Cdd:TIGR00606 1004 R----QDIDTQKIQERW--LQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLqMKQEHQKLEENIDLIKRNHVLALGRQ 1077
|
890
....*....|...
gi 71061468 1338 QESQEEIKSLTKE 1350
Cdd:TIGR00606 1078 KGYEKEIKHFKKE 1090
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
745-899 |
3.12e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 745 LLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSN--YKSTDQEFQNF 822
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIESL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 823 KTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSyktQELQEKTREVQERLNEMEQLKEQLENR 899
Cdd:COG1579 102 KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAELEAELEELEAEREELAAKIPPE 175
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
1161-1452 |
3.12e-03 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 43.12 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1161 ENLKNELKNKELTLEHMETERLELAQKLNENYEEvkSITKERKVLKElqksfETERDHLRGYIREIEatglqtkeeLKIA 1240
Cdd:PRK12903 657 DNLLRITHFKFSEKDFENYHKEELAQYLIEALNE--IYFKKRQVILD-----KIALNTFFESERYII---------LSAL 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1241 HIHLKEHQETIDELRRSV-----SEKTAQIINTQDLEKSHTKLQEEIPvlheeQELLPNVKEVSETQETMNELELLTEQS 1315
Cdd:PRK12903 721 DKYWQNHIDTMDKLRSGVnlvqySQKNPYQVYTEEGTKKFNILLQEIA-----YDVIVSLFNNPNAEKILIITEILSDGI 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1316 TTKDSTTLARIEMERLRLNEkfqesQEEIKSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEK 1395
Cdd:PRK12903 796 NNSDINDRPQELIDQIIESE-----EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1396 DNettkivsEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEMKSVAKEKDDLQRLQE 1452
Cdd:PRK12903 871 KN-------EFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEK 920
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1841-1975 |
3.49e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.26 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1841 ETQKKVSEMEQLKKQIKDqsltLSKLeienLNLAQKLHENLEEmkSVMKERDNLRRVE---ETLKLERDQLKESLQETKA 1917
Cdd:PRK09039 47 EISGKDSALDRLNSQIAE----LADL----LSLERQGNQDLQD--SVANLRASLSAAEaerSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 1918 RDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKD---ELQKKIQEL 1975
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKrdrESQAKIADL 177
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
871-1110 |
3.51e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 871 KTQELQEKTREVQERLnemEQLKEQLENRDSTLQTVEREktliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKS 950
Cdd:PRK11281 67 QTLALLDKIDRQKEET---EQLKQQLAQAPAKLRQAQAE----LEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 951 DIHDTVNMNID-----TQ-EQLRNAL-ESLKQHQETINTLKS-KISEEVSRN-----LHMEENTGETKDEFQQK-MVGID 1016
Cdd:PRK11281 140 AQNDLAEYNSQlvslqTQpERAQAALyANSQRLQQIRNLLKGgKVGGKALRPsqrvlLQAEQALLNAQNDLQRKsLEGNT 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1017 KKQDLEAK-------NTQTLTADVKD-NEIIEQQRkifsLIQEKNELQQMLESVIAEKEQ----LKTDLKENIEMT---I 1081
Cdd:PRK11281 220 QLQDLLQKqrdyltaRIQRLEHQLQLlQEAINSKR----LTLSEKTVQEAQSQDEAARIQanplVAQELEINLQLSqrlL 295
|
250 260 270
....*....|....*....|....*....|.
gi 71061468 1082 ENQEEL-RLLGDELK-KQQEIVAQEKNHAIK 1110
Cdd:PRK11281 296 KATEKLnTLTQQNLRvKNWLDRLTQSERNIK 326
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1855-2009 |
3.54e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1855 QIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQELKT-ARMLS 1933
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGErARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1934 KEHK---------------------ETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKEDVNms 1992
Cdd:COG3883 97 RSGGsvsyldvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE-- 174
|
170
....*....|....*..
gi 71061468 1993 hKKINEMEQLKKQFEAQ 2009
Cdd:COG3883 175 -AQQAEQEALLAQLSAE 190
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
830-1104 |
3.54e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 830 EQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE 909
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 910 KTLITEKLQQTLEEVKTLTQEKDDLKQLQESLQ---IERDQLKSDIHDTVNMNIDTQEQLRNALESLKQhQETINTLKSK 986
Cdd:COG4372 110 AEELQEELEELQKERQDLEQQRKQLEAQIAELQseiAEREEELKELEEQLESLQEELAALEQELQALSE-AEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 987 ISEEVSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNTQTLTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEK 1066
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270
....*....|....*....|....*....|....*...
gi 71061468 1067 EQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQE 1104
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAA 306
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
496-984 |
3.73e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 496 IESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNDLDEfEALERKTKKDQEMQLIHEISNLKnlvkhaEVYNQDLEN 575
Cdd:PRK01156 216 TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYES-EIKTAESDLSMELEKNNYYKELE------ERHMKIIND 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 576 ELSSKVELLREKEDQIKKLQEYidSQKLENIKMDLSYSLESIEDPKQMKQTlfdaetvaldakresaflRSENLELKEKM 655
Cdd:PRK01156 289 PVYKNRNYINDYFKYKNDIENK--KQILSNIDAEINKYHAIIKKLSVLQKD------------------YNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 656 KELATTYKQMENDIQLYQSQL---EAKKKMQVDLEKELQSAFNEITKLTSL--IDGKVPKDLLCNL-----ELEGKITDL 725
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKNIERMSAFISEILKIqeIDPDAIKKELNEInvklqDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 726 QKELNKEVEENEALREEVILLS--------------------------ELKSLPSEVERLRKEIQDKSEELHIITSEKDK 779
Cdd:PRK01156 429 NQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeksnhiinhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 780 LFSEVVHK----ESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFQNFKTLHM-DFEQKYKMVLEEN-------------- 840
Cdd:PRK01156 509 LESEEINKsineYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLeDLDSKRTSWLNALavislidietnrsr 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 841 -ERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQ 919
Cdd:PRK01156 589 sNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPD 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71061468 920 TLEEVKTLTQEKDDLKQLQESLQ---IERDQLKSdIHDTVNMNIDTQEQ----LRNALESLKQHQETINTLK 984
Cdd:PRK01156 669 LKEITSRINDIEDNLKKSRKALDdakANRARLES-TIEILRTRINELSDrindINETLESMKKIKKAIGDLK 739
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
1500-1608 |
3.74e-03 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 42.84 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1500 LSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFK---EHRKAKDSALQSIESKMLELTN 1576
Cdd:NF037998 639 LTNKEKLSSKLLLKIKKINDKIDLLKKKEENKEAKKNAKLIEKVKAKIKKLEQKItklKLNKKKSNKIIKIRWKKKDWIF 718
|
90 100 110
....*....|....*....|....*....|..
gi 71061468 1577 RLQESQEEiqIMIKEKEEMKRVQEALQIERDQ 1608
Cdd:NF037998 719 FLKDNTDV--ILAIESEIEIQVIEKIKVKRNE 748
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1025-1238 |
3.81e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1025 NTQTLTADVKDNEIIEQ---QRKIFSLIQEKN-----ELQQMLESVIAEKEQLKTDLKE------NIEMTIENQEE-LRL 1089
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQiktYNKNIEEQRKKNgeniaRKQNKYDELVEEAKTIKAEIEEltdellNLVMDIEDPSAaLNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1090 LGDELKKQQEIVAQ-EKNHAIKKEGELSRTCDRLAEVEEKLKEKsqqlqekqqqllnVQEEMSEMQKKINEIENLKNELK 1168
Cdd:PHA02562 260 LNTAAAKIKSKIEQfQKVIKMYEKGGVCPTCTQQISEGPDRITK-------------IKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 1169 NKELTLEHMETERLELAQKLNENYE----EVKSITKERKVLKELQKSFETERDHLRGYIREIEATGlQTKEELK 1238
Cdd:PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV-KTKSELV 399
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1843-1996 |
3.82e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1843 QKKVSEMEQLKKQIKDQSltlsKLEIEN------LNLAQKLHENLEEMKSVMKERDN-LRRVEETLKLERDQLKESLQET 1915
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEA----KKEAEAikkealLEAKEEIHKLRNEFEKELRERRNeLQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1916 KARDLEIQQELKTARMLSKE---HKETVDKLREKISEKTIQISDIQKD------LDKSKDELQKKIQELQKKELQllRVK 1986
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQElekKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARHEAAVLIKEIEE--EAK 183
|
170
....*....|
gi 71061468 1987 EDVNMSHKKI 1996
Cdd:PRK12704 184 EEADKKAKEI 193
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1682-1918 |
3.94e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1682 RSVTKERDDLRSVEETLKVERDQLKENLRETiTRDLEK-QEELKIVhmhlkehqeTIDKLRGIVSEKTNEISNMQKDLEH 1760
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEA-EAALEEfRQKNGLV---------DLSEEAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1761 SNDALKAQDLKIQEELRIAHMHLKE--QQETIDKLRGIVSEKTDKLSNMQKDLENSN---AKLQEKIQELKAN-----EH 1830
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIAALRAQlqqeaQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1831 QLITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIE------NLNLAQKLHENLeemksvmkerdnLRRVEETlkle 1904
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAElrrlerEVEVARELYESL------------LQRLEEA---- 377
|
250
....*....|....
gi 71061468 1905 rdQLKESLQETKAR 1918
Cdd:COG3206 378 --RLAEALTVGNVR 389
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
926-1223 |
4.19e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 926 TLTQEKDD-LKQLQES--LQIErdQLKSDIHDtvnmnidtqEQLRNALESLKQHQETINTLKSKISEEvsrnlhmeentg 1002
Cdd:PRK05771 13 TLKSYKDEvLEALHELgvVHIE--DLKEELSN---------ERLRKLRSLLTKLSEALDKLRSYLPKL------------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1003 ETKDEFQQKMvgidKKQDLEAkntqtlTADVKDNEIIEQQRKIFSLIQEKNELQQMLESVIAEKEQLKtdLKENIEMTIE 1082
Cdd:PRK05771 70 NPLREEKKKV----SVKSLEE------LIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE--PWGNFDLDLS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1083 NQEELRL-------LGDELKKQQEIVAQEKNHAIKKEGELSRTC------DRLAEVEEKLKeKSQQLQEKQQQLLNVQEE 1149
Cdd:PRK05771 138 LLLGFKYvsvfvgtVPEDKLEELKLESDVENVEYISTDKGYVYVvvvvlkELSDEVEEELK-KLGFERLELEEEGTPSEL 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1150 MSEMQKKINEIENLKNELKNKeltLEhmeterlELAQKLNE---NYEEVKSITKERKVLKELQKsfETER-DHLRGYI 1223
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEE---LK-------ELAKKYLEellALYEYLEIELERAEALSKFL--KTDKtFAIEGWV 282
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
653-902 |
4.42e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDgkvpkdllcnlELEGKITDLQKELNKE 732
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-----------ALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 733 VEENEALREEvilLSELKSLPSEVERLRKEIQDKSEELHIITSEKdklFSEVVHKESRVQGLLEEIGKTKDDLATTQSNY 812
Cdd:COG4942 89 EKEIAELRAE---LEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 813 KSTDQEFQNFKtlhmdfeQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQL 892
Cdd:COG4942 163 AALRAELEAER-------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|
gi 71061468 893 KEQLENRDST 902
Cdd:COG4942 236 AAAAAERTPA 245
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1155-1522 |
4.47e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.44 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1155 KKINEIENLKNELKNKELTLEHMETERLELAQKlnenyEEVKSITKERKVLKElqkSFETERDHLRGYIREIEATGLQTK 1234
Cdd:pfam09731 121 KSEQEKEKALEEVLKEAISKAESATAVAKEAKD-----DAIQAVKAHTDSLKE---ASDTAEISREKATDSALQKAEALA 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1235 EELKIAHIHLKEHQET-----IDELRRSVSEKTAQIINTQDLEKSHTKLQEEIPVLHEEQELLPNVkEVSETQETMNELE 1309
Cdd:pfam09731 193 EKLKEVINLAKQSEEEaapplLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIV-FQQELVSIFPDII 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1310 L----LTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKsltkerdnlKTIKEALEVKHDQLKEHIRETLAKIQESQSK 1385
Cdd:pfam09731 272 PvlkeDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREE---------KHIERALEKQKEELDKLAEELSARLEEVRAA 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1386 QEQSLNmKEKDNETTKIVSEMEQfkpkdsaLLRIEIEmlglskRLQESHDEmksvakekddlqRLQEVLQSESDQLKENI 1465
Cdd:pfam09731 343 DEAQLR-LEFEREREEIRESYEE-------KLRTELE------RQAEAHEE------------HLKDVLVEQEIELQREF 396
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1466 KEIVAKHLETEEELkvahcclkeQEETINELRVNLSEKETEISTIqKQLEAINDKLQ 1522
Cdd:pfam09731 397 LQDIKEKVEEERAG---------RLLKLNELLANLKGLEKATSSH-SEVEDENRKAQ 443
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
637-1282 |
4.59e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 637 AKRESAFLRSENLELKekmkeLATTYKQMENDIQLYQSQLEAKKKMQVDL-------EKELQSAFNEITKLTSLIDGKVP 709
Cdd:pfam12128 244 TKLQQEFNTLESAELR-----LSHLHFGYKSDETLIASRQEERQETSAELnqllrtlDDQWKEKRDELNGELSAADAAVA 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 710 KD------------LLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLR--------KEIQDKSEE 769
Cdd:pfam12128 319 KDrselealedqhgAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRskikeqnnRDIAGIKDK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 770 LHIITSEKDKLFSEV-VHKESRVQGLLEEIGKTKDDLATTQSNYKSTDQEFqNFKTLHMDFEQKYKMVLEEN----ERMN 844
Cdd:pfam12128 399 LAKIREARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL-KLRLNQATATPELLLQLENFderiERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 845 QEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVERE----------KTLIT 914
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKeapdweqsigKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 915 EKLQQT-LEEVKTLTQEKD---------DLKQLQ--------ESLQIERDQLKSDIHDtvnmnidtqeqlrnALESLKQH 976
Cdd:pfam12128 558 ELLHRTdLDPEVWDGSVGGelnlygvklDLKRIDvpewaaseEELRERLDKAEEALQS--------------AREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 977 QETINTLKSKIsEEVSRNLHMEENTGETKDEFQQKMVgiDKKQDLEAKNTQTLTAdvkdneiiEQQRKIFSLIQEKNELQ 1056
Cdd:pfam12128 624 EEQLVQANGEL-EKASREETFARTALKNARLDLRRLF--DEKQSEKDKKNKALAE--------RKDSANERLNSLEAQLK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1057 QMLESVIAEKEQLKTDLKENiemTIENQEELRLLGDELKKQ-----QEIVAQEKNHAIKKEG---ELSRTCDRLAEVEEK 1128
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREA---RTEKQAYWQVVEGALDAQlallkAAIAARRSGAKAELKAletWYKRDLASLGVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1129 LKEKSQQLQEKQQQLLNV---QEEMSEMQKKINEIENLKNElkNKELTLEHMETERLELAQKLNENYEEVKSITKErkvl 1205
Cdd:pfam12128 770 IAKLKREIRTLERKIERIavrRQEVLRYFDWYQETWLQRRP--RLATQLSNIERAISELQQQLARLIADTKLRRAK---- 843
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1206 kelqksFETERDHLRGyiREIEATGLQTKEELKIAHI-HLKEHQeTIDELRRSVSEKTAQIintQDLEKSHTKLQEEI 1282
Cdd:pfam12128 844 ------LEMERKASEK--QQVRLSENLRGLRCEMSKLaTLKEDA-NSEQAQGSIGERLAQL---EDLKLKRDYLSESV 909
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
828-948 |
4.85e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 828 DFEQKYKMVLEEN-------ERMNQEIVNLSKEAqkfdSSLGALKTELSYKTQELQEKTREVQERLNE-------MEQLK 893
Cdd:PRK04863 541 EFCKRLGKNLDDEdeleqlqEELEARLESLSESV----SEARERRMALRQQLEQLQARIQRLAARAPAwlaaqdaLARLR 616
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 71061468 894 EQLENRDSTLQTVerektliTEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 948
Cdd:PRK04863 617 EQSGEEFEDSQDV-------TEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
493-702 |
6.10e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 493 QENIESELNSLRADYDNLVLDYEQLRTEKEEMELKLKEKNdlDEFEALERKTKKDQEmqliheisNLKNLVKHAevYNQD 572
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQ--AEIAEAEAEIEERRE--------ELGERARAL--YRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 573 lenELSSKVELLREKEDqikkLQEYIDsqKLENIKMDLSYSLESIEDPKQMKQTLFDAETVALDAKREsafLRSENLELK 652
Cdd:COG3883 100 ---GSVSYLDVLLGSES----FSDFLD--RLSALSKIADADADLLEELKADKAELEAKKAELEAKLAE---LEALKAELE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 71061468 653 EKMKELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTS 702
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
313-941 |
6.14e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 313 FDETLTALQFASTAKYMKN-----TPYVNEVSTDEALLKRYRKEIMDLKKQLEEVsletraQAMEKDQLAQLLEEKDLLQ 387
Cdd:PRK01156 155 LDEILEINSLERNYDKLKDvidmlRAEISNIDYLEEKLKSSNLELENIKKQIADD------EKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 388 KVQNEKI---ENLTRMLVTSSSLTLQQELKAKRKRRVTWCLGKINKMKNSnyadqfniptnitTKTHKLSINLLREIDES 464
Cdd:PRK01156 229 NAMDDYNnlkSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKEL-------------EERHMKIINDPVYKNRN 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 465 VCSESDVFSNTLDTLSEIewnpatkllnQENIESELNSlradYDNLVLDYEQLRTEKEEMELKLKEKNDLDEfEALERKT 544
Cdd:PRK01156 296 YINDYFKYKNDIENKKQI----------LSNIDAEINK----YHAIIKKLSVLQKDYNDYIKKKSRYDDLNN-QILELEG 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 545 KKDQEMQLIHEISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSqKLENIKMDLSYSLESIEDPKQMK 624
Cdd:PRK01156 361 YEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINV-KLQDISSKVSSLNQRIRALRENL 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 625 QTLfdAETVALDAKRESAFLRSENLElKEKMKELATTYKQMENDIQlyqsqlEAKKKMQVDLEKELQSAFNEITKLTSLI 704
Cdd:PRK01156 440 DEL--SRNMEMLNGQSVCPVCGTTLG-EEKSNHIINHYNEKKSRLE------EKIREIEIEVKDIDEKIVDLKKRKEYLE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 705 DGKVPKDLLCNLELEGKITDLQKELNKEVEENEALREEVILLSELKSLPSEVERLRKE------IQDKSEELHIITSEKD 778
Cdd:PRK01156 511 SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTswlnalAVISLIDIETNRSRSN 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 779 KLFSEVVHKESRVQGLLEEIgktKDDLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVleenERMNQEIVNLSKEAQKFD 858
Cdd:PRK01156 591 EIKKQLNDLESRLQEIEIGF---PDDKSYIDKSIREIENEANNLNNKYNEIQENKILI----EKLRGKIDNYKKQIAEID 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 859 SSLGALKtELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ 938
Cdd:PRK01156 664 SIIPDLK-EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLR 742
|
...
gi 71061468 939 ESL 941
Cdd:PRK01156 743 EAF 745
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1327-1609 |
6.68e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1327 EMERLrLNEKFQESQEEIKSLTKERDNlktIKEALEVKHDQLKEhiretlakiQESQSKQeqslNMKEKDNETTKIVSEM 1406
Cdd:PHA02562 167 EMDKL-NKDKIRELNQQIQTLDMKIDH---IQQQIKTYNKNIEE---------QRKKNGE----NIARKQNKYDELVEEA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1407 EQFKPkdsallriEIEMLglskrlqesHDEMKSVAKEKDDLQRLQEVLQSESDQLKENIKEIvAKHLETEEELKVAHCCL 1486
Cdd:PHA02562 230 KTIKA--------EIEEL---------TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMYEKGGVCPTCT 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1487 KEQEETINELrvnlSEKETEISTIQKQLEAINDKlqnkIQEIYEKEEQFNiKQISEVQEKVNELKQFKEHRKAKDSALQS 1566
Cdd:PHA02562 292 QQISEGPDRI----TKIKDKLKELQHSLEKLDTA----IDELEEIMDEFN-EQSKKLLELKNKISTNKQSLITLVDKAKK 362
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 71061468 1567 IESKMLELTNRLQESQEEIQIMIKEKEEMKRVQEALQIERDQL 1609
Cdd:PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1454-1771 |
7.11e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1454 LQSESDQLKENIKEivAKHLETE-EELKVAHCCLKEQEETINE---------LRVNLSEKETEISTIQKQLEAINDKLQN 1523
Cdd:PLN03229 434 LEGEVEKLKEQILK--AKESSSKpSELALNEMIEKLKKEIDLEyteaviamgLQERLENLREEFSKANSQDQLMHPVLME 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1524 KIQEIyekEEQFNiKQISE------VQEKVNELKQFKEHRKAKDSALQSIESKmLELTNRLQESQEEIQImikeKEEMKR 1597
Cdd:PLN03229 512 KIEKL---KDEFN-KRLSRapnylsLKYKLDMLNEFSRAKALSEKKSKAEKLK-AEINKKFKEVMDRPEI----KEKMEA 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1598 VQEALQIER----DQLKENTKEIVAKMKESQEKEY---------QFLKMTAVNETQEKMCEIEHLKEQFEtqKLNLE-NI 1663
Cdd:PLN03229 583 LKAEVASSGassgDELDDDLKEKVEKMKKEIELELagvlksmglEVIGVTKKNKDTAEQTPPPNLQEKIE--SLNEEiNK 660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1664 ETENIRLTQILHENLEEMRSVTKERDDLRSVEETLKVERdqLKENLRETITRDLEKQEelkivhmhLKEHQETIDKlrgi 1743
Cdd:PLN03229 661 KIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEA--LEQQIKQKIAEALNSSE--------LKEKFEELEA---- 726
|
330 340
....*....|....*....|....*...
gi 71061468 1744 vsektnEISNMQKDLEHSNDALKAQDLK 1771
Cdd:PLN03229 727 ------ELAAARETAAESNGSLKNDDDK 748
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1787-1937 |
7.39e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1787 QETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQikdqsltlskl 1866
Cdd:PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE----------- 569
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71061468 1867 eienlNLAQKLHENLEEMKSVmkerdnlrrVEETLKLERDQLKESLQETKARDL-EIQQELKTARMLSKEHK 1937
Cdd:PRK00409 570 -----EAEKEAQQAIKEAKKE---------ADEIIKELRQLQKGGYASVKAHELiEARKRLNKANEKKEKKK 627
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
823-1476 |
7.54e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 823 KTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERL----NEMEQLKEQLEN 898
Cdd:pfam12128 286 AELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLpswqSELENLEERLKA 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 899 RDSTLQTVERE----KTLITEKLQQTLEE------------VKTLTQEKDDLKQLQESLQIERDQLKSDIHDTvnmnidt 962
Cdd:pfam12128 366 LTGKHQDVTAKynrrRSKIKEQNNRDIAGikdklakirearDRQLAVAEDDLQALESELREQLEAGKLEFNEE------- 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 963 QEQLRNALESLKQHQETIntlksKISEEVSRNLHMEENTGETKDEFQQKMvgidKKQDLEAKNTQTLTADVKDNEIIEQQ 1042
Cdd:pfam12128 439 EYRLKSRLGELKLRLNQA-----TATPELLLQLENFDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASEALR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1043 RKIFSLIQEKNELQQMLESVIAEKEQLKTDLkeNIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRTCDRL 1122
Cdd:pfam12128 510 QASRRLEERQSALDELELQLFPQAGTLLHFL--RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1123 AEV--------EEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKIN-EIENLKNE-------LKNKELTLEHMETERLELAQ 1186
Cdd:pfam12128 588 KRIdvpewaasEEELRERLDKAEEALQSAREKQAAAEEQLVQANgELEKASREetfartaLKNARLDLRRLFDEKQSEKD 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1187 KLNENYEE-----VKSITKERKVLKELQKSFETERDHLRGYIREieatglqtkeelkiahiHLKEHQETIDELRRSVSEK 1261
Cdd:pfam12128 668 KKNKALAErkdsaNERLNSLEAQLKQLDKKHQAWLEEQKEQKRE-----------------ARTEKQAYWQVVEGALDAQ 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1262 TAQIinTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSEtqetMNELELLTEQSTTkdSTTLARIEMERLRLNEKFQESQ 1341
Cdd:pfam12128 731 LALL--KAAIAARRSGAKAELKALETWYKRDLASLGVDP----DVIAKLKREIRTL--ERKIERIAVRRQEVLRYFDWYQ 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1342 EEIKSltkERDNLKTIKEALEvkhdQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKpkdsalLRIEI 1421
Cdd:pfam12128 803 ETWLQ---RRPRLATQLSNIE----RAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRG------LRCEM 869
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1422 EMLGLSKRLQESHDEMKSVAKEKDDLQRLQEVLQSESDQLK---ENIKEIVAKHLETE 1476
Cdd:pfam12128 870 SKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKkyvEHFKNVIADHSGSG 927
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
556-931 |
7.69e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 556 ISNLKNLVKHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLE------NIKMDLSYSLESIEDPKQMKQTLFD 629
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEeaekarQAEMDRQAAIYAEQERMAMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 630 AETVALDAKRESAFLRSENLELK-EKMKELATTYKQMENDIQLYQSQLEAKKKMQVdLEKELQSafneitkltslidgkv 708
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAARKVKI-LEEERQR---------------- 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 709 pkdllcnlelegKITDLQKELNK-EVEENEALREEVILLSELKSlpSEVERLRKEIQDKSEELHII--TSEKDKLFSEVV 785
Cdd:pfam17380 414 ------------KIQQQKVEMEQiRAEQEEARQREVRRLEEERA--REMERVRLEEQERQQQVERLrqQEEERKRKKLEL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 786 HKESRVQGLLEEIgktkddlattqsNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVnlskeaqkfdsslgalK 865
Cdd:pfam17380 480 EKEKRDRKRAEEQ------------RRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIY----------------E 531
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71061468 866 TELSYKTQELQEKTREVQERLNEMEQLKEQLENRdSTLQTVEREKTLI-----TEKLQQTLEEVKTLTQEK 931
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRIQEQMRKATEER-SRLEAMEREREMMrqiveSEKARAEYEATTPITTIK 601
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1912-2068 |
8.32e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1912 LQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLLRVKedvnm 1991
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR----- 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71061468 1992 shkKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIRIVAKERDELRRIKESLKMERDQFIATLREMIAR 2068
Cdd:COG1579 87 ---NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEE 160
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
837-948 |
8.83e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 837 LEENERMNQEIVNLSKE-----AQKFDSS--LGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVE-- 907
Cdd:COG3096 524 LEQRLRQQQNAERLLEEfcqriGQQLDAAeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApa 603
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 908 -----------REKT--------LITEKLQQTLEEVKTLTQEKDDLKQLQESLQIERDQL 948
Cdd:COG3096 604 wlaaqdalerlREQSgealadsqEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
744-1100 |
9.20e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 9.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 744 ILLSELKSLPSEVERLRKEIQDKsEELHIITSEKDKLFSEVVHKesrVQGLLEEIGKTKDDLATTQSNYKSTDqefqNFK 823
Cdd:PRK10929 7 FLMAWLLSWGAYAATAPDEKQIT-QELEQAKAAKTPAQAEIVEA---LQSALNWLEERKGSLERAKQYQQVID----NFP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 824 TLHMDFEQKyKMVLEENER---MNQEIVNLSKEAQKFDSSLgalkTELSYKTQELQEKTREVQERLNEMEQL----KEQL 896
Cdd:PRK10929 79 KLSAELRQQ-LNNERDEPRsvpPNMSTDALEQEILQVSSQL----LEKSRQAQQEQDRAREISDSLSQLPQQqteaRRQL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 897 ENRDSTLQTVEREKTLITE---KLQQTLEEVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQ-EQLRNALES 972
Cdd:PRK10929 154 NEIERRLQTLGTPNTPLAQaqlTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYlQALRNQLNS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 973 LKQhQETINTLKS--KISEE-------VSRNLHMEENTGETKDEFQQKMVGIDKKQDLEAKNT----QTLtadvkdNEII 1039
Cdd:PRK10929 234 QRQ-REAERALESteLLAEQsgdlpksIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTlqvrQAL------NTLR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1040 EQQ-------------RKIFSLIQEKNELQQmLESVIA-------------EKEQLKTDLKENIEMTIENQEElRLLGDE 1093
Cdd:PRK10929 307 EQSqwlgvsnalgealRAQVARLPEMPKPQQ-LDTEMAqlrvqrlryedllNKQPQLRQIRQADGQPLTAEQN-RILDAQ 384
|
....*..
gi 71061468 1094 LKKQQEI 1100
Cdd:PRK10929 385 LRTQREL 391
|
|
| ATG17_like |
pfam04108 |
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ... |
1345-1553 |
9.26e-03 |
|
Autophagy protein ATG17-like domain; This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs.
Pssm-ID: 427715 [Multi-domain] Cd Length: 360 Bit Score: 40.83 E-value: 9.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1345 KSLTKERDNLKTIKEALEVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQfkpkdsallrIEIEML 1424
Cdd:pfam04108 112 DSVEILRDALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELES----------LEEEMA 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1425 GLSKRLQESHDE-MKSVAKEKDDLQRLQEVLQSESDQLKENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSek 1503
Cdd:pfam04108 182 SLLESLTNHYDQcVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDELLSALQ-- 259
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 71061468 1504 etEISTIQKQLEAINDKLQnKIQEIYEKEEQFNIKQISEVQEKVNELKQF 1553
Cdd:pfam04108 260 --LIAEIQSRLPEYLAALK-EFEERWEEEKETIEDYLSELEDLREFYEGF 306
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
511-1165 |
9.28e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 511 VLDYEQLRTEKEEMELKLKEKNDLDEFEALERKTKKDQEM-QLIHEISNLKNLVKHAEVYNQDLENE-----LSSKVELL 584
Cdd:TIGR00618 223 VLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLkQLRARIEELRAQEAVLEETQERINRArkaapLAAHIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 585 REKEDQIKKLQEYIDSQKLENIKMDLSYSL-----ESIEDPKQMKQTLFDAETVALDAKRESAFLR---SENLELKEKMK 656
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvkqqSSIEEQRRLLQTLHSQEIHIRDAHEVATSIReisCQQHTLTQHIH 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 657 ELATTYKQMENDIQLYQSQLEAKKKMQVDLEKELQSAFNEITKLTSLIDGKVPK---DLLCNLELEGKITDLQKELNKEV 733
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQqryAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 734 EENEALREEVILLSELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHK----------ESRVQGLLEEIGKTKD 803
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgplTRRMQRGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 804 DLATTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQ 883
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 884 ERLNEME--QLKEQLENRDSTLQTV--EREKTLITEKLQQTLEEVKTLTQEKDDLKQLQES-LQIERDQLKSDIHDTVNM 958
Cdd:TIGR00618 623 PEQDLQDvrLHLQQCSQELALKLTAlhALQLTLTQERVREHALSIRVLPKELLASRQLALQkMQSEKEQLTYWKEMLAQC 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 959 NIDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDEFQQKmvgidkkqdleakntqtLTADVKDNEI 1038
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV-----------------LKARTEAHFN 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1039 IEQQRKIfsLIQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHAIKKEGELSRT 1118
Cdd:TIGR00618 766 NNEEVTA--ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 71061468 1119 CDRLAEVEEKLKEKSQQLQEKQQQllnvQEEMSEMQKKINEIENLKN 1165
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQE----QAKIIQLSDKLNGINQIKI 886
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1326-1543 |
9.79e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1326 IEMERLR-LNEKFQESQEEIKSLTKERDNLKTIKEALEV----KHDQLKEHIRETLAKIQESQSKQEQSLNmkEKDNETT 1400
Cdd:PRK05771 40 LSNERLRkLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvsvkSLEELIKDVEEELEKIEKEIKELEEEIS--ELENEIK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1401 KIVSEMEQFKP-KDsalLRIEIEMLGLSKRLQ--------------ESHDEMKSVAKEKDDLQRLQEVLQSESDQLKEnI 1465
Cdd:PRK05771 118 ELEQEIERLEPwGN---FDLDLSLLLGFKYVSvfvgtvpedkleelKLESDVENVEYISTDKGYVYVVVVVLKELSDE-V 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71061468 1466 KEIVAKHLETEEELKVahccLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEqfNIKQISEV 1543
Cdd:PRK05771 194 EEELKKLGFERLELEE----EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLE--IELERAEA 265
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1876-2109 |
9.89e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1876 KLHENLEEMKSVMKERDNlrrVEETLKLERDQLKESLQETKARDLEIQQELKTARMLSKEHKETVDKLREKISEKTIQIS 1955
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDH---IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71061468 1956 DIQKDLDKSKDELQKKIQELQkkelqllRVKEDVNMsHKKINEMEQLKKQFEAQNLSMQSVRMDNFQLTKKLHESLEEIR 2035
Cdd:PHA02562 252 DPSAALNKLNTAAAKIKSKIE-------QFQKVIKM-YEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAID 323
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71061468 2036 IVAKERDELRRIKESLKMERDQFIATLREMIARDRQNHQVKPEKRLLSDGQQHLTESLREKCSRIKELLKRYSE 2109
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
|
|
| |
