NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2188194334|ref|NP_001388099|]
View 

arginine/serine-rich coiled-coil protein 2 isoform 2 [Rattus norvegicus]

Protein Classification

small acidic/RSRC2 family protein( domain architecture ID 10634575)

small acidic/RSRC2 family protein similar to small acidic protein and arginine/serine-rich coiled-coil protein 2 (RSRC2)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SMAP pfam15477
Small acidic protein family; This domain family is found in eukaryotes, and is approximately ...
 355-424 2.13e-13

Small acidic protein family; This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


:

Pssm-ID: 464738 [Multi-domain]  Cd Length: 73  Bit Score: 65.02  E-value: 2.13e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2188194334 355 WEKLNF-GNKDQNVKFRKLMGIKSEDEAGCSSVDEESY--KTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLG 424
Cdd:pfam15477   1 WDTAAFdGDAERQEKFLRLMGGKKAGSSGSAESSTRPNmaLSKKKQEKLQQDLEQQYEAAMKETHGGRGVGLG 73
 
Name Accession Description Interval E-value
SMAP pfam15477
Small acidic protein family; This domain family is found in eukaryotes, and is approximately ...
 355-424 2.13e-13

Small acidic protein family; This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


Pssm-ID: 464738 [Multi-domain]  Cd Length: 73  Bit Score: 65.02  E-value: 2.13e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2188194334 355 WEKLNF-GNKDQNVKFRKLMGIKSEDEAGCSSVDEESY--KTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLG 424
Cdd:pfam15477   1 WDTAAFdGDAERQEKFLRLMGGKKAGSSGSAESSTRPNmaLSKKKQEKLQQDLEQQYEAAMKETHGGRGVGLG 73
 
Name Accession Description Interval E-value
SMAP pfam15477
Small acidic protein family; This domain family is found in eukaryotes, and is approximately ...
 355-424 2.13e-13

Small acidic protein family; This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


Pssm-ID: 464738 [Multi-domain]  Cd Length: 73  Bit Score: 65.02  E-value: 2.13e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2188194334 355 WEKLNF-GNKDQNVKFRKLMGIKSEDEAGCSSVDEESY--KTLKQQEEVFRNLDAQYEMARSQTHTQRGMGLG 424
Cdd:pfam15477   1 WDTAAFdGDAERQEKFLRLMGGKKAGSSGSAESSTRPNmaLSKKKQEKLQQDLEQQYEAAMKETHGGRGVGLG 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH