zinc finger protein LOC728743 isoform 2 [Homo sapiens]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| PHA00733 super family | cl26169 | hypothetical protein |
36-77 | 1.04e-03 | ||
hypothetical protein The actual alignment was detected with superfamily member PHA00733: Pssm-ID: 177301 Cd Length: 128 Bit Score: 35.62 E-value: 1.04e-03
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| Name | Accession | Description | Interval | E-value | ||
| PHA00733 | PHA00733 | hypothetical protein |
36-77 | 1.04e-03 | ||
hypothetical protein Pssm-ID: 177301 Cd Length: 128 Bit Score: 35.62 E-value: 1.04e-03
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| zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
37-57 | 2.38e-03 | ||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 32.66 E-value: 2.38e-03
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| Name | Accession | Description | Interval | E-value | ||
| PHA00733 | PHA00733 | hypothetical protein |
36-77 | 1.04e-03 | ||
hypothetical protein Pssm-ID: 177301 Cd Length: 128 Bit Score: 35.62 E-value: 1.04e-03
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| zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
37-57 | 2.38e-03 | ||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 32.66 E-value: 2.38e-03
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| HypA | pfam01155 | Hydrogenase/urease nickel incorporation, metallochaperone, hypA; HypA is a metallochaperone ... |
26-92 | 9.41e-03 | ||
Hydrogenase/urease nickel incorporation, metallochaperone, hypA; HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold. Pssm-ID: 460085 Cd Length: 111 Bit Score: 32.49 E-value: 9.41e-03
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| Blast search parameters | ||||
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