|
Name |
Accession |
Description |
Interval |
E-value |
| NPIP super family |
cl05750 |
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ... |
41-303 |
5.84e-84 |
|
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.
The actual alignment was detected with superfamily member pfam06409:
Pssm-ID: 461900 [Multi-domain] Cd Length: 267 Bit Score: 273.92 E-value: 5.84e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 41 VINTLADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLrs 120
Cdd:pfam06409 22 LIITLADHRHKFADFGCSPWLCIIFLFLIFPKFAGHDCSSDLCQRALKSIFPRQEGHDGSLDDIFRARRQNERKQEAI-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 121 icmhtkkrvssfrgnKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAR---------------KQKMF 185
Cdd:pfam06409 100 ---------------ICKLEDIFKLNRHDEIKGKAKIAKEHLRKKSMKEDEHGEKEKQAKeaeekgkldekehgeKEEMF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 186 QRAQELRRRAEDYHKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSITDNSLSLKT 265
Cdd:pfam06409 165 QEAEALGKLAEDEIHCKIEMFARAPACNRRAEAAAECKHSPGAPKPLCLRAEMAAAEHGHQPGLPTQPHLIADNLKNLKG 244
|
250 260 270
....*....|....*....|....*....|....*...
gi 2082313042 266 PPECVLTPLPPSADdnlktppecvltplpPSADDNLKT 303
Cdd:pfam06409 245 HPECLLTPLHPIAD---------------NSADDKLKP 267
|
|
| AFD_class_I super family |
cl17068 |
Adenylate forming domain, Class I superfamily; This family includes acyl- and aryl-CoA ligases, ... |
2-41 |
2.71e-11 |
|
Adenylate forming domain, Class I superfamily; This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain.
The actual alignment was detected with superfamily member cd05928:
Pssm-ID: 473059 [Multi-domain] Cd Length: 530 Bit Score: 67.49 E-value: 2.71e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2082313042 2 VKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKV 41
Cdd:cd05928 467 VKAFVVLAPQFLSHDPEQLTKELQQHVKSVTAPYKYPRKV 506
|
|
| PHA03307 super family |
cl33723 |
transcriptional regulator ICP4; Provisional |
731-1130 |
2.37e-04 |
|
transcriptional regulator ICP4; Provisional
The actual alignment was detected with superfamily member PHA03307:
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 731 HPQQMI-ISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADdNIKTPAERLRRPLPPSADDNLKTPSER 809
Cdd:PHA03307 39 SQGQLVsDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTW-SLSTLAPASPAREGSPTPPGPSSPDPP 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 810 QLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKT 889
Cdd:PHA03307 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 890 PSERQLTPLPPSAP---PSADDNIKTPAERLRGPLPPSADDNLKTPSERqltplppsappsaddniKTPAERLRGPLPPS 966
Cdd:PHA03307 198 PPAAASPRPPRRSSpisASASSPAPAPGRSAADDAGASSSDSSSSESSG-----------------CGWGPENECPLPRP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 967 ADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPlATQEAEAEKPRKPKRQRAAEMEPPPEPK 1046
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS-PRASSSSSSSRESSSSSTSSSSESSRGA 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1047 RRRVGDvEPSRKPKRRRAADVEPSSPKPKRRRvgdvePSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVE 1126
Cdd:PHA03307 340 AVSPGP-SPSRSPSPSRPPPPADPSSPRKRPR-----PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
|
....
gi 2082313042 1127 PSSP 1130
Cdd:PHA03307 414 PSPL 417
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NPIP |
pfam06409 |
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ... |
41-303 |
5.84e-84 |
|
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.
Pssm-ID: 461900 [Multi-domain] Cd Length: 267 Bit Score: 273.92 E-value: 5.84e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 41 VINTLADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLrs 120
Cdd:pfam06409 22 LIITLADHRHKFADFGCSPWLCIIFLFLIFPKFAGHDCSSDLCQRALKSIFPRQEGHDGSLDDIFRARRQNERKQEAI-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 121 icmhtkkrvssfrgnKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAR---------------KQKMF 185
Cdd:pfam06409 100 ---------------ICKLEDIFKLNRHDEIKGKAKIAKEHLRKKSMKEDEHGEKEKQAKeaeekgkldekehgeKEEMF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 186 QRAQELRRRAEDYHKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSITDNSLSLKT 265
Cdd:pfam06409 165 QEAEALGKLAEDEIHCKIEMFARAPACNRRAEAAAECKHSPGAPKPLCLRAEMAAAEHGHQPGLPTQPHLIADNLKNLKG 244
|
250 260 270
....*....|....*....|....*....|....*...
gi 2082313042 266 PPECVLTPLPPSADdnlktppecvltplpPSADDNLKT 303
Cdd:pfam06409 245 HPECLLTPLHPIAD---------------NSADDKLKP 267
|
|
| MACS_euk |
cd05928 |
Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM); MACS catalyzes the two-step ... |
2-41 |
2.71e-11 |
|
Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM); MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12.
Pssm-ID: 341251 [Multi-domain] Cd Length: 530 Bit Score: 67.49 E-value: 2.71e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2082313042 2 VKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKV 41
Cdd:cd05928 467 VKAFVVLAPQFLSHDPEQLTKELQQHVKSVTAPYKYPRKV 506
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
731-1130 |
2.37e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 731 HPQQMI-ISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADdNIKTPAERLRRPLPPSADDNLKTPSER 809
Cdd:PHA03307 39 SQGQLVsDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTW-SLSTLAPASPAREGSPTPPGPSSPDPP 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 810 QLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKT 889
Cdd:PHA03307 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 890 PSERQLTPLPPSAP---PSADDNIKTPAERLRGPLPPSADDNLKTPSERqltplppsappsaddniKTPAERLRGPLPPS 966
Cdd:PHA03307 198 PPAAASPRPPRRSSpisASASSPAPAPGRSAADDAGASSSDSSSSESSG-----------------CGWGPENECPLPRP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 967 ADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPlATQEAEAEKPRKPKRQRAAEMEPPPEPK 1046
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS-PRASSSSSSSRESSSSSTSSSSESSRGA 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1047 RRRVGDvEPSRKPKRRRAADVEPSSPKPKRRRvgdvePSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVE 1126
Cdd:PHA03307 340 AVSPGP-SPSRSPSPSRPPPPADPSSPRKRPR-----PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
|
....
gi 2082313042 1127 PSSP 1130
Cdd:PHA03307 414 PSPL 417
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
1027-1136 |
8.06e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 43.37 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1027 KPRKPKRQRAAEMEPPPEPKRRRvgdvepSRKPKRRRAADVEPSSPKpKRRRVGDVEPSRKPKRRRAADVEPSSPEPK-- 1104
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDK------GRERSRDRSRDRERSRSR-RRDRHRDRDYYRGRERRSRSRRPNRRYRPRek 75
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2082313042 1105 --------RRRVGDVEPSRKPKRRRAADVEPSSPEPKRRR 1136
Cdd:TIGR01622 76 rrrrgdsyRRRRDDRRSRREKPRARDGTPEPLTEDERDRR 115
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NPIP |
pfam06409 |
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ... |
41-303 |
5.84e-84 |
|
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.
Pssm-ID: 461900 [Multi-domain] Cd Length: 267 Bit Score: 273.92 E-value: 5.84e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 41 VINTLADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLrs 120
Cdd:pfam06409 22 LIITLADHRHKFADFGCSPWLCIIFLFLIFPKFAGHDCSSDLCQRALKSIFPRQEGHDGSLDDIFRARRQNERKQEAI-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 121 icmhtkkrvssfrgnKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAR---------------KQKMF 185
Cdd:pfam06409 100 ---------------ICKLEDIFKLNRHDEIKGKAKIAKEHLRKKSMKEDEHGEKEKQAKeaeekgkldekehgeKEEMF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 186 QRAQELRRRAEDYHKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSITDNSLSLKT 265
Cdd:pfam06409 165 QEAEALGKLAEDEIHCKIEMFARAPACNRRAEAAAECKHSPGAPKPLCLRAEMAAAEHGHQPGLPTQPHLIADNLKNLKG 244
|
250 260 270
....*....|....*....|....*....|....*...
gi 2082313042 266 PPECVLTPLPPSADdnlktppecvltplpPSADDNLKT 303
Cdd:pfam06409 245 HPECLLTPLHPIAD---------------NSADDKLKP 267
|
|
| MACS_euk |
cd05928 |
Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM); MACS catalyzes the two-step ... |
2-41 |
2.71e-11 |
|
Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM); MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12.
Pssm-ID: 341251 [Multi-domain] Cd Length: 530 Bit Score: 67.49 E-value: 2.71e-11
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2082313042 2 VKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKV 41
Cdd:cd05928 467 VKAFVVLAPQFLSHDPEQLTKELQQHVKSVTAPYKYPRKV 506
|
|
| NPIP |
pfam06409 |
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate ... |
41-536 |
1.38e-09 |
|
Nuclear pore complex interacting protein (NPIP); This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans.
Pssm-ID: 461900 [Multi-domain] Cd Length: 267 Bit Score: 60.14 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 41 VINTLADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLrs 120
Cdd:pfam06409 1 MFCCLADERHRGGCFGGHPALLIITLADHRHKFADFGCSPWLCIIFLFLIFPKFAGHDCSSDLCQRALKSIFPRQEGH-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 121 icmhtkkrvssfrgnKIGLKDVITLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTArkqKMFQRAQELRrraEDYHK 200
Cdd:pfam06409 79 ---------------DGSLDDIFRARRQNERKQEAIICKLEDIFKLNRHDEIKGKAKIA---KEHLRKKSMK---EDEHG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 201 CKippsarkalcnwvRMAAAEHrhssglpywpyLTAETLKNRMGHQPPPPTQQhsitdnslslktppecvltplppsADD 280
Cdd:pfam06409 138 EK-------------EKQAKEA-----------EEKGKLDEKEHGEKEEMFQE------------------------AEA 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 281 NLKTPPECVLTPLPPSADdnlktppeclltplPPSADDNLKTPPECLLTPlppsaddNLKTPPeclltplppsappsapp 360
Cdd:pfam06409 170 LGKLAEDEIHCKIEMFAR--------------APACNRRAEAAAECKHSP-------GAPKPL----------------- 211
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 361 saddnlktraeCLlhplppsaddnlktpserqltplppsappsaddNIKTPAERLRGPLPPsaddnlktPSErqltplpp 440
Cdd:pfam06409 212 -----------CL---------------------------------RAEMAAAEHGHQPGL--------PTQ-------- 231
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 441 sappsaddniktpaerlrgplPPSADDNLKtpserqltplppsappsaddNIKTPAERLRGPLPPSaddnlktpserqlt 520
Cdd:pfam06409 232 ---------------------PHLIADNLK--------------------NLKGHPECLLTPLHPI-------------- 256
|
490
....*....|....*.
gi 2082313042 521 plppsAPPSADDNIKT 536
Cdd:pfam06409 257 -----ADNSADDKLKP 267
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
731-1130 |
2.37e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 731 HPQQMI-ISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADdNIKTPAERLRRPLPPSADDNLKTPSER 809
Cdd:PHA03307 39 SQGQLVsDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTW-SLSTLAPASPAREGSPTPPGPSSPDPP 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 810 QLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKT 889
Cdd:PHA03307 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 890 PSERQLTPLPPSAP---PSADDNIKTPAERLRGPLPPSADDNLKTPSERqltplppsappsaddniKTPAERLRGPLPPS 966
Cdd:PHA03307 198 PPAAASPRPPRRSSpisASASSPAPAPGRSAADDAGASSSDSSSSESSG-----------------CGWGPENECPLPRP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 967 ADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPlATQEAEAEKPRKPKRQRAAEMEPPPEPK 1046
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS-PRASSSSSSSRESSSSSTSSSSESSRGA 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1047 RRRVGDvEPSRKPKRRRAADVEPSSPKPKRRRvgdvePSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVE 1126
Cdd:PHA03307 340 AVSPGP-SPSRSPSPSRPPPPADPSSPRKRPR-----PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
|
....
gi 2082313042 1127 PSSP 1130
Cdd:PHA03307 414 PSPL 417
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
1027-1136 |
8.06e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 43.37 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1027 KPRKPKRQRAAEMEPPPEPKRRRvgdvepSRKPKRRRAADVEPSSPKpKRRRVGDVEPSRKPKRRRAADVEPSSPEPK-- 1104
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDK------GRERSRDRSRDRERSRSR-RRDRHRDRDYYRGRERRSRSRRPNRRYRPRek 75
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2082313042 1105 --------RRRVGDVEPSRKPKRRRAADVEPSSPEPKRRR 1136
Cdd:TIGR01622 76 rrrrgdsyRRRRDDRRSRREKPRARDGTPEPLTEDERDRR 115
|
|
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
1004-1121 |
1.76e-03 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 42.86 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1004 PLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEM------EPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRR 1077
Cdd:PRK13709 1629 VQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIvrkmaeNKPDLPDGKTEQAVRDIAGQERDRAAISEREAALPESV 1708
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2082313042 1078 rvgdvepSRKPKRRRAADVEPSSPEPKRRRVGDVE--PSRKPKRRR 1121
Cdd:PRK13709 1709 -------LREPQREREAVREVARENLLRERLQQMErdMVRDLQKEK 1747
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
1021-1121 |
4.37e-03 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 41.06 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1021 QEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPK---RRRVGDVEPSRKPKRRRAadve 1097
Cdd:TIGR01622 19 RDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPNRRYRPRekrRRRGDSYRRRRDDRRSRR---- 94
|
90 100
....*....|....*....|....
gi 2082313042 1098 psspEPKRRRVGDVEPSRKPKRRR 1121
Cdd:TIGR01622 95 ----EKPRARDGTPEPLTEDERDR 114
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
995-1132 |
5.44e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 40.83 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 995 KTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEP--------PPEPKRRRvgDVEPSRKPKRRRAAD 1066
Cdd:PTZ00449 527 KEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPtlskkpefPKDPKHPK--DPEEPKKPKRPRSAQ 604
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2082313042 1067 VEPSSPKPKRRRVGDVEPSRKpkrRRAADVEPSSPEPKRRRVGDVEP--SRKPKRRRAadvePSSPEP 1132
Cdd:PTZ00449 605 RPTRPKSPKLPELLDIPKSPK---RPESPKSPKRPPPPQRPSSPERPegPKIIKSPKP----PKSPKP 665
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
752-1132 |
6.61e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 752 PLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTP--AERLRRPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTP 829
Cdd:PHA03247 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPP 2702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 830 A-ERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAerlrGPLPPSADdnlkTPSERQLTPLPPSAPPSADD 908
Cdd:PHA03247 2703 PpPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA----GPATPGGP----ARPARPPTTAGPPAPAPPAA 2774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 909 NIKTPAERLrgPLPPSADDNLKTPSERQLTPLPPSAPPSADDN-IKTPAERLRGPLPPsaddnlkTPSERQLTPLPPSAP 987
Cdd:PHA03247 2775 PAAGPPRRL--TRPAVASLSESRESLPSPWDPADPPAAVLAPAaALPPAASPAGPLPP-------PTSAQPTAPPPPPGP 2845
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 988 PSaddniktPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEM---------EPPPEPKRRRVGDVEPsrk 1058
Cdd:PHA03247 2846 PP-------PSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAvsrstesfaLPPDQPERPPQPQAPP--- 2915
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2082313042 1059 PKRRRAADVEPSSPKPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRrVGDVEPSRKP-KRRRAADVEPSSPEP 1132
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW-LGALVPGRVAvPRFRVPQPAPSREAP 2989
|
|
| MACS_like |
cd05972 |
Medium-chain acyl-CoA synthetase (MACS or ACSM); MACS catalyzes the two-step activation of ... |
1-41 |
7.97e-03 |
|
Medium-chain acyl-CoA synthetase (MACS or ACSM); MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes.
Pssm-ID: 341276 [Multi-domain] Cd Length: 428 Bit Score: 40.01 E-value: 7.97e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2082313042 1 MVKLSIVLTPQFLSHDQgqLTKELQQHVKSVTCPCEYLRKV 41
Cdd:cd05972 369 VVKAFVVLTSGYEPSEE--LAEELQGHVKKVLAPYKYPREI 407
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
957-1121 |
7.97e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 40.27 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 957 ERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRKPKRQRA 1036
Cdd:PRK12678 57 EARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082313042 1037 AEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRK 1116
Cdd:PRK12678 137 ARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE 216
|
....*
gi 2082313042 1117 PKRRR 1121
Cdd:PRK12678 217 ERGRR 221
|
|
| |
