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Conserved domains on  [gi|2045151349|ref|NP_001381943|]
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leucine-rich repeat-containing protein 55 precursor [Rattus norvegicus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
60-237 6.53e-16

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.67  E-value: 6.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLpmdtRNLSLAHNRIAAVPP--GYLTcymELRVLDLRNNSLMELPPGLFlHAKRLAHLDLSYNN 137
Cdd:COG4886    99 TELDLSGNEELSNLTNL----ESLDLSGNQLTDLPEelANLT---NLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQ 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349 138 LSHVPADmFREAHGLVHIDLSHNPwLRRVhPQAFQGLVHLRDLDLSYGGLAFLSlEALEGLPGLVTLQIGGN-----PWV 212
Cdd:COG4886   171 LTDLPEE-LGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNqltdlPEL 246

                         170       180
                  ....*....|....*....|....*...
gi 2045151349 213 CGCTmepLLKWL---RNRIQRCTADSQL 237
Cdd:COG4886   247 GNLT---NLEELdlsNNQLTDLPPLANL 271
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
60-237 6.53e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.67  E-value: 6.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLpmdtRNLSLAHNRIAAVPP--GYLTcymELRVLDLRNNSLMELPPGLFlHAKRLAHLDLSYNN 137
Cdd:COG4886    99 TELDLSGNEELSNLTNL----ESLDLSGNQLTDLPEelANLT---NLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQ 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349 138 LSHVPADmFREAHGLVHIDLSHNPwLRRVhPQAFQGLVHLRDLDLSYGGLAFLSlEALEGLPGLVTLQIGGN-----PWV 212
Cdd:COG4886   171 LTDLPEE-LGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNqltdlPEL 246

                         170       180
                  ....*....|....*....|....*...
gi 2045151349 213 CGCTmepLLKWL---RNRIQRCTADSQL 237
Cdd:COG4886   247 GNLT---NLEELdlsNNQLTDLPPLANL 271
LRR_8 pfam13855
Leucine rich repeat;
103-161 1.41e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 61.77  E-value: 1.41e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2045151349 103 ELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNLSHVPADMFREAHGLVHIDLSHNP 161
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 60-160 2.49e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 55.24  E-value: 2.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLPMDTR--NLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNN 137
Cdd:PLN00113  455 QMLSLARNKFFGGLPDSFGSKRleNLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

                          90       100
                  ....*....|....*....|....
gi 2045151349 138 LS-HVPADmFREAHGLVHIDLSHN 160
Cdd:PLN00113  535 LSgQIPAS-FSEMPVLSQLDLSQN 557
LRRNT smart00013
Leucine rich repeat N-terminal domain;
51-82 3.57e-06

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 43.08  E-value: 3.57e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2045151349   51 CPVLCTCRNQVVDCSNQRLFSVPPDLPMDTRN 82
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 65-161 1.11e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.47  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  65 SNQRLfsvPPDLPM--DTRNL-SLAHNriaavppgyltcymeLRVLDLRNNSLMELPPglFLHAKRLAHLDLSYNNLSHV 141
Cdd:cd21340    98 ENQRL---PPGEKLtfDPRSLaALSNS---------------LRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDL 157

                          90       100
                  ....*....|....*....|..
gi 2045151349 142 P--ADMFREAHGLVHIDLSHNP 161
Cdd:cd21340   158 EelLDLLSSWPSLRELDLTGNP 179
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
60-237 6.53e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 77.67  E-value: 6.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLpmdtRNLSLAHNRIAAVPP--GYLTcymELRVLDLRNNSLMELPPGLFlHAKRLAHLDLSYNN 137
Cdd:COG4886    99 TELDLSGNEELSNLTNL----ESLDLSGNQLTDLPEelANLT---NLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQ 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349 138 LSHVPADmFREAHGLVHIDLSHNPwLRRVhPQAFQGLVHLRDLDLSYGGLAFLSlEALEGLPGLVTLQIGGN-----PWV 212
Cdd:COG4886   171 LTDLPEE-LGNLTNLKELDLSNNQ-ITDL-PEPLGNLTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNqltdlPEL 246

                         170       180
                  ....*....|....*....|....*...
gi 2045151349 213 CGCTmepLLKWL---RNRIQRCTADSQL 237
Cdd:COG4886   247 GNLT---NLEELdlsNNQLTDLPPLANL 271
LRR_8 pfam13855
Leucine rich repeat;
103-161 1.41e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 61.77  E-value: 1.41e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2045151349 103 ELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNLSHVPADMFREAHGLVHIDLSHNP 161
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 60-160 2.49e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 55.24  E-value: 2.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLPMDTR--NLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNN 137
Cdd:PLN00113  455 QMLSLARNKFFGGLPDSFGSKRleNLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

                          90       100
                  ....*....|....*....|....
gi 2045151349 138 LS-HVPADmFREAHGLVHIDLSHN 160
Cdd:PLN00113  535 LSgQIPAS-FSEMPVLSQLDLSQN 557
LRR_8 pfam13855
Leucine rich repeat;
151-210 5.11e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 49.06  E-value: 5.11e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349 151 GLVHIDLSHNPwLRRVHPQAFQGLVHLRDLDLSYGGLAFLSLEALEGLPGLVTLQIGGNP 210
Cdd:pfam13855   2 NLRSLDLSNNR-LTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNR 60
LRR_8 pfam13855
Leucine rich repeat;
81-138 5.37e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.67  E-value: 5.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2045151349  81 RNLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNL 138
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
52-237 2.67e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.47  E-value: 2.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  52 PVLCTCRN-QVVDCSNQRLFSVPPDLPMDT--RNLSLAHNRIAAVPP-GYLTcymELRVLDLRNNSLMELPPGLFLhaKR 127
Cdd:COG4886   199 EPLGNLTNlEELDLSGNQLTDLPEPLANLTnlETLDLSNNQLTDLPElGNLT---NLEELDLSNNQLTDLPPLANL--TN 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349 128 LAHLDLSYNNLSHVPADMFREAHGLVHIDLSHNPWLRRVHPQAFQGLVHLRDLDLSYGGLAFLSLEALEGLPGLVTLQIG 207
Cdd:COG4886   274 LKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLL 353

                         170       180       190
                  ....*....|....*....|....*....|
gi 2045151349 208 GNPWVCGCTMEPLLKWLRNRIQRCTADSQL 237
Cdd:COG4886   354 LLLNLLSLLLTLLLTLGLLGLLEATLLTLA 383
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
60-165 8.44e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 50.47  E-value: 8.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLPMDTRNLSLAHNRIAAVPPgylTCYMELRVLDLRNNSLMELPPGLflhAKRLAHLDLSYNNLS 139
Cdd:PRK15370  328 KTLEAGENALTSLPASLPPELQVLDVSKNQITVLPE---TLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLV 401

                          90       100
                  ....*....|....*....|....*....
gi 2045151349 140 HVPADM--FR-EAHGLVHIDLSHNPWLRR 165
Cdd:PRK15370  402 RLPESLphFRgEGPQPTRIIVEYNPFSER 430
LRRNT smart00013
Leucine rich repeat N-terminal domain;
51-82 3.57e-06

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 43.08  E-value: 3.57e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2045151349   51 CPVLCTCRNQVVDCSNQRLFSVPPDLPMDTRN 82
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
60-145 4.82e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 48.15  E-value: 4.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  60 QVVDCSNQRLFSVPPDLPMDTRNLSLAHNRIAAVPPgylTCYMELRVLDLRNNSLMELPPGLflhAKRLAHLDLSYNNLS 139
Cdd:PRK15370  244 QEMELSINRITELPERLPSALQSLDLFHNKISCLPE---NLPEELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLT 317


                  ....*.
gi 2045151349 140 HVPADM 145
Cdd:PRK15370  318 ALPETL 323
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 58-160 1.35e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 46.76  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  58 RNQVVDCSNQRLFSVPPDLPMDtrnlsLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNN 137
Cdd:PLN00113  484 RNQFSGAVPRKLGSLSELMQLK-----LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

                          90       100
                  ....*....|....*....|....
gi 2045151349 138 LS-HVPADMFREaHGLVHIDLSHN 160
Cdd:PLN00113  559 LSgEIPKNLGNV-ESLVQVNISHN 581
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 65-161 1.11e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.47  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  65 SNQRLfsvPPDLPM--DTRNL-SLAHNriaavppgyltcymeLRVLDLRNNSLMELPPglFLHAKRLAHLDLSYNNLSHV 141
Cdd:cd21340    98 ENQRL---PPGEKLtfDPRSLaALSNS---------------LRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDL 157

                          90       100
                  ....*....|....*....|..
gi 2045151349 142 P--ADMFREAHGLVHIDLSHNP 161
Cdd:cd21340   158 EelLDLLSSWPSLRELDLTGNP 179
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 51-77 2.05e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 37.99  E-value: 2.05e-04
                          10        20
                  ....*....|....*....|....*..
gi 2045151349  51 CPVLCTCRNQVVDCSNQRLFSVPPDLP 77
Cdd:pfam01462   2 CPVPCHCSATVVNCSDRGLTAVPRDLP 28
LRRCT smart00082
Leucine rich repeat C-terminal domain;
209-260 2.87e-04

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 38.18  E-value: 2.87e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2045151349  209 NPWVCGCTMEPLLKWLRNRIQrcTADSQLAECRGPPEVEGaPLFSLTEESFK 260
Cdd:smart00082   1 NPFICDCELRWLLRWLQANEH--LQDPVDLRCASPSSLRG-PLLELLHSEFK 49
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 104-209 1.69e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 39.77  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349 104 LRVLDLRNNSLMEL-PPGLF---LHAKRLAHLDLSYNNLS----HVPADMFREAHGLVHIDLSHN----PWLRRVhPQAF 171
Cdd:COG5238   210 VTTLWLKRNPIGDEgAEILAealKGNKSLTTLDLSNNQIGdegvIALAEALKNNTTVETLYLSGNqigaEGAIAL-AKAL 288

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2045151349 172 QGLVHLRDLDLSYGGLAFLSLEAL-EGLPG---LVTLQIGGN 209
Cdd:COG5238   289 QGNTTLTSLDLSVNRIGDEGAIALaEGLQGnktLHTLNLAYN 330
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 81-183 3.85e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 37.84  E-value: 3.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045151349  81 RNLSLAHNRIAAVPpGyLTCYMELRVLDLRNNSLmelPPG---------LFLHAKRLAHLDLSYNNLSHVpaDMFREAHG 151
Cdd:cd21340    71 KKLYLGGNRISVVE-G-LENLTNLEELHIENQRL---PPGekltfdprsLAALSNSLRVLNISGNNIDSL--EPLAPLRN 143

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2045151349 152 LVHIDLSHNPwLRRVHP--QAFQGLVHLRDLDLS 183
Cdd:cd21340   144 LEQLDASNNQ-ISDLEEllDLLSSWPSLRELDLT 176
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 104-138 4.89e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.53  E-value: 4.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2045151349 104 LRVLDLRNNSLMELPPGLFLhaKRLAHLDLSYNNL 138
Cdd:pfam12799   3 LEVLDLSNNQITDIPPLAKL--PNLETLDLSGNNK 35
LRR smart00370
Leucine-rich repeats, outliers;
103-124 5.47e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 33.86  E-value: 5.47e-03
                           10        20
                   ....*....|....*....|..
gi 2045151349  103 ELRVLDLRNNSLMELPPGLFLH 124
Cdd:smart00370   3 NLRELDLSNNQLSSLPPGAFQG 24
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
103-124 5.47e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 33.86  E-value: 5.47e-03
                           10        20
                   ....*....|....*....|..
gi 2045151349  103 ELRVLDLRNNSLMELPPGLFLH 124
Cdd:smart00369   3 NLRELDLSNNQLSSLPPGAFQG 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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