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Conserved domains on  [gi|1988312935|ref|NP_001380460|]
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matrilin-4 isoform 4 precursor [Homo sapiens]

Protein Classification

VWA domain-containing protein( domain architecture ID 10107167)

VWA (von Willebrand factor type A) domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 31-253 7.04e-128

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


:

Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 373.64  E-value: 7.04e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  31 GPLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQG 110
Cdd:cd01475     1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 111 TMTGLAIQYAMNVAFSVAEGARPPEERVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLD 190
Cdd:cd01475    81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312935 191 EHVFLVESFDLIQEFGLQFQSRLCAI-DLCAEGTHGCEHHCVNSPGSYFCHCQVGFVLQQDQRS 253
Cdd:cd01475   161 DHVFYVEDFSTIEELTKKFQGKICVVpDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 342-559 4.83e-122

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 359.01  E-value: 4.83e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 342 GHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERG 421
Cdd:cd01475     1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 422 TMTGLALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAE 501
Cdd:cd01475    81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312935 502 LHVSYAPDFGTMTHLLENLRGSICPEegisagtelRSPCECESLVEFQGRTLGALESL 559
Cdd:cd01475   161 DHVFYVEDFSTIEELTKKFQGKICVV---------PDLCATLSHVCQQVCISTPGSYL 209
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 260-295 5.16e-10

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 54.56  E-value: 5.16e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 260 CSFGNHSCQHECVSTPGGPRCHCREGHDLQPDGRSC 295
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 301-336 4.97e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 49.16  E-value: 4.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 301 CNGVDHGCEFQCVSEGLSYRCLCPEGRQLQADGKSC 336
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 31-253 7.04e-128

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 373.64  E-value: 7.04e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  31 GPLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQG 110
Cdd:cd01475     1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 111 TMTGLAIQYAMNVAFSVAEGARPPEERVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLD 190
Cdd:cd01475    81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312935 191 EHVFLVESFDLIQEFGLQFQSRLCAI-DLCAEGTHGCEHHCVNSPGSYFCHCQVGFVLQQDQRS 253
Cdd:cd01475   161 DHVFYVEDFSTIEELTKKFQGKICVVpDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 342-559 4.83e-122

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 359.01  E-value: 4.83e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 342 GHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERG 421
Cdd:cd01475     1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 422 TMTGLALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAE 501
Cdd:cd01475    81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312935 502 LHVSYAPDFGTMTHLLENLRGSICPEegisagtelRSPCECESLVEFQGRTLGALESL 559
Cdd:cd01475   161 DHVFYVEDFSTIEELTKKFQGKICVV---------PDLCATLSHVCQQVCISTPGSYL 209
VWA pfam00092
von Willebrand factor type A domain;
345-519 9.59e-65

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 209.44  E-value: 9.59e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTM- 423
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 424 TGLALRHMVEHSFSEAQGARPralNVPRVGLVFTDGRSQD-DISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAEL 502
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....*..
gi 1988312935 503 HVSYAPDFGTMTHLLEN 519
Cdd:pfam00092 158 HVFTVSDFEALEDLQDQ 174
VWA pfam00092
von Willebrand factor type A domain;
34-205 1.58e-58

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 192.88  E-value: 1.58e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTM- 112
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 113 TGLAIQYAMNVAFSVAEGARPpeeRVPRVAVIVTDGRPQD-RVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLDE 191
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....
gi 1988312935 192 HVFLVESFDLIQEF 205
Cdd:pfam00092 158 HVFTVSDFEALEDL 171
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 345-517 1.18e-49

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 169.56  E-value: 1.18e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEY-MERGTM 423
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYkLGGGTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  424 TGLALRHMVEHSFSEAQGARPralNVPRVGLVFTDGRSQD---DISVWAARAKEEGIVMYAVGVGKAV-EAELREIASEP 499
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNDVdEEELKKLASAP 157

                          170
                   ....*....|....*...
gi 1988312935  500 AELHVSYAPDFGTMTHLL 517
Cdd:smart00327 158 GGVYVFLPELLDLLIDLL 175
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 34-205 7.24e-48

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 164.55  E-value: 7.24e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935   34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQG-TM 112
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYKLGGgTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  113 TGLAIQYAMNVAFSVAEGARPpeeRVPRVAVIVTDGRPQD---RVAEVAAQARARGIEIYAVGVQRA-DVGSLRAMASPP 188
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNDvDEEELKKLASAP 157

                          170
                   ....*....|....*..
gi 1988312935  189 LDEHVFLVESFDLIQEF 205
Cdd:smart00327 158 GGVYVFLPELLDLLIDL 174
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 32-185 4.87e-18

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 84.22  E-value: 4.87e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  32 PLDLVFVIDSSRSVR---PFEF--ETMRQFLMGLLRGlnvgpnaTRVGVIQYSSQVQSVFPLRafSRREDMERAIRDLVP 106
Cdd:COG1240    92 GRDVVLVVDASGSMAaenRLEAakGALLDFLDDYRPR-------DRVGLVAFGGEAEVLLPLT--RDREALKRALDELPP 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 107 lAQGTMTGLAIQYAMNVAFSVAEGARppeervpRVAVIVTDGRP---QDRVAEVAAQARARGIEIYAVGV--QRADVGSL 181
Cdd:COG1240   163 -GGGTPLGDALALALELLKRADPARR-------KVIVLLTDGRDnagRIDPLEAAELAAAAGIRIYTIGVgtEAVDEGLL 234


                  ....
gi 1988312935 182 RAMA 185
Cdd:COG1240   235 REIA 238
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 344-498 8.17e-16

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 77.67  E-value: 8.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQN-FELVKRFVNqivDFLDVSPEGTRVGLVQFSSRVRTEFPLGRygtaaEVKQAVLAVEYMERGT 422
Cdd:COG1240    93 RDVVLVVDASGSMAAENrLEAAKGALL---DFLDDYRPRDRVGLVAFGGEAEVLLPLTR-----DREALKRALDELPPGG 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 423 MT--GLALRHMVEHsFSEAQGARPRALnvprvgLVFTDGR---SQDDISVWAARAKEEGIVMYAVGVGKAV--EAELREI 495
Cdd:COG1240   165 GTplGDALALALEL-LKRADPARRKVI------VLLTDGRdnaGRIDPLEAAELAAAAGIRIYTIGVGTEAvdEGLLREI 237


                  ...
gi 1988312935 496 ASE 498
Cdd:COG1240   238 AEA 240
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 260-295 5.16e-10

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 54.56  E-value: 5.16e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 260 CSFGNHSCQHECVSTPGGPRCHCREGHDLQPDGRSC 295
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 301-336 4.97e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 49.16  E-value: 4.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 301 CNGVDHGCEFQCVSEGLSYRCLCPEGRQLQADGKSC 336
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 31-253 7.04e-128

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 373.64  E-value: 7.04e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  31 GPLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQG 110
Cdd:cd01475     1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 111 TMTGLAIQYAMNVAFSVAEGARPPEERVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLD 190
Cdd:cd01475    81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312935 191 EHVFLVESFDLIQEFGLQFQSRLCAI-DLCAEGTHGCEHHCVNSPGSYFCHCQVGFVLQQDQRS 253
Cdd:cd01475   161 DHVFYVEDFSTIEELTKKFQGKICVVpDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 342-559 4.83e-122

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 359.01  E-value: 4.83e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 342 GHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERG 421
Cdd:cd01475     1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 422 TMTGLALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAE 501
Cdd:cd01475    81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312935 502 LHVSYAPDFGTMTHLLENLRGSICPEegisagtelRSPCECESLVEFQGRTLGALESL 559
Cdd:cd01475   161 DHVFYVEDFSTIEELTKKFQGKICVV---------PDLCATLSHVCQQVCISTPGSYL 209
VWA pfam00092
von Willebrand factor type A domain;
345-519 9.59e-65

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 209.44  E-value: 9.59e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTM- 423
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 424 TGLALRHMVEHSFSEAQGARPralNVPRVGLVFTDGRSQD-DISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAEL 502
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....*..
gi 1988312935 503 HVSYAPDFGTMTHLLEN 519
Cdd:pfam00092 158 HVFTVSDFEALEDLQDQ 174
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 344-510 4.31e-62

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 202.07  E-value: 4.31e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTM 423
Cdd:cd01472     1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 424 TGLALRHMVEHSFSEAQGARPralNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAELH 503
Cdd:cd01472    81 TGKALKYVRENLFTEASGSRE---GVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIASDPKELY 157


                  ....*..
gi 1988312935 504 VSYAPDF 510
Cdd:cd01472   158 VFNVADF 164
VWA pfam00092
von Willebrand factor type A domain;
34-205 1.58e-58

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 192.88  E-value: 1.58e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTM- 112
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 113 TGLAIQYAMNVAFSVAEGARPpeeRVPRVAVIVTDGRPQD-RVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLDE 191
Cdd:pfam00092  81 TGKALKYALENLFSSAAGARP---GAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEG 157

                         170
                  ....*....|....
gi 1988312935 192 HVFLVESFDLIQEF 205
Cdd:pfam00092 158 HVFTVSDFEALEDL 171
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 344-504 4.97e-58

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 190.97  E-value: 4.97e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMER-GT 422
Cdd:cd01450     1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGgGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 423 MTGLALRHMVEHSFSEAQgarpRALNVPRVGLVFTDGRSQDDISV--WAARAKEEGIVMYAVGVGKAVEAELREIASEPA 500
Cdd:cd01450    81 NTGKALQYALEQLFSESN----ARENVPKVIIVLTDGRSDDGGDPkeAAAKLKDEGIKVFVVGVGPADEEELREIASCPS 156


                  ....
gi 1988312935 501 ELHV 504
Cdd:cd01450   157 ERHV 160
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 345-510 6.04e-58

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 190.96  E-value: 6.04e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMT 424
Cdd:cd01482     2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 425 GLALRHMVEHSFSEAQGARPralNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAELHV 504
Cdd:cd01482    82 GKALTHVREKNFTPDAGARP---GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETHV 158


                  ....*.
gi 1988312935 505 SYAPDF 510
Cdd:cd01482   159 FNVADF 164
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 33-194 1.28e-50

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 171.71  E-value: 1.28e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLA-QGT 111
Cdd:cd01450     1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGgGGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 112 MTGLAIQYAMNVAFSvaegARPPEERVPRVAVIVTDGRPQDR--VAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPL 189
Cdd:cd01450    81 NTGKALQYALEQLFS----ESNARENVPKVIIVLTDGRSDDGgdPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCPS 156


                  ....*
gi 1988312935 190 DEHVF 194
Cdd:cd01450   157 ERHVF 161
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 34-199 3.98e-50

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 170.49  E-value: 3.98e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTMT 113
Cdd:cd01472     2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 114 GLAIQYAMNVAFSVAEGARppeERVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLDEHV 193
Cdd:cd01472    82 GKALKYVRENLFTEASGSR---EGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIASDPKELYV 158


                  ....*.
gi 1988312935 194 FLVESF 199
Cdd:cd01472   159 FNVADF 164
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 345-517 1.18e-49

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 169.56  E-value: 1.18e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEY-MERGTM 423
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYkLGGGTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  424 TGLALRHMVEHSFSEAQGARPralNVPRVGLVFTDGRSQD---DISVWAARAKEEGIVMYAVGVGKAV-EAELREIASEP 499
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNDVdEEELKKLASAP 157

                          170
                   ....*....|....*...
gi 1988312935  500 AELHVSYAPDFGTMTHLL 517
Cdd:smart00327 158 GGVYVFLPELLDLLIDLL 175
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 34-205 7.24e-48

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 164.55  E-value: 7.24e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935   34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQG-TM 112
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYKLGGgTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  113 TGLAIQYAMNVAFSVAEGARPpeeRVPRVAVIVTDGRPQD---RVAEVAAQARARGIEIYAVGVQRA-DVGSLRAMASPP 188
Cdd:smart00327  81 LGAALQYALENLFSKSAGSRR---GAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNDvDEEELKKLASAP 157

                          170
                   ....*....|....*..
gi 1988312935  189 LDEHVFLVESFDLIQEF 205
Cdd:smart00327 158 GGVYVFLPELLDLLIDL 174
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 34-199 8.12e-45

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 156.29  E-value: 8.12e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTMT 113
Cdd:cd01482     2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 114 GLAIQYAMNVAFSVAEGARPpeeRVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLDEHV 193
Cdd:cd01482    82 GKALTHVREKNFTPDAGARP---GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETHV 158


                  ....*.
gi 1988312935 194 FLVESF 199
Cdd:cd01482   159 FNVADF 164
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 345-499 3.60e-34

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 127.05  E-value: 3.60e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYME-RGTM 423
Cdd:cd01481     2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGgSQLN 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1988312935 424 TGLALRHMVEHSFSEAQGARPRAlNVPRVGLVFTDGRSQDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEP 499
Cdd:cd01481    82 TGSALDYVVKNLFTKSAGSRIEE-GVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDP 156
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 344-510 8.22e-34

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 126.70  E-value: 8.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTM 423
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 424 TGLALRHMVEHSFSEAQGARPRALnvpRVGLVFTDGRSQDDISVWAA--RAKEEGIVMYAVGVGKAVEA-----ELREIA 496
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDAT---KVLVVITDGESHDDPLLKDVipQAEREGIIRYAIGVGGHFQRensreELKTIA 157

                         170
                  ....*....|....
gi 1988312935 497 SEPAELHVSYAPDF 510
Cdd:cd01469   158 SKPPEEHFFNVTDF 171
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 34-199 1.26e-33

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 125.51  E-value: 1.26e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  34 DLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPL-AQGTM 112
Cdd:cd01481     2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRgGSQLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 113 TGLAIQYAMNVAFSVAEGARpPEERVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPldEH 192
Cdd:cd01481    82 TGSALDYVVKNLFTKSAGSR-IEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDP--SF 158


                  ....*..
gi 1988312935 193 VFLVESF 199
Cdd:cd01481   159 VFQVSDF 165
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 33-200 4.25e-32

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 121.69  E-value: 4.25e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTM 112
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 113 TGLAIQYAMNVAFSVAEGARPpeeRVPRVAVIVTDGRPQD--RVAEVAAQARARGIEIYAVGV----QRAD-VGSLRAMA 185
Cdd:cd01469    81 TATAIQYVVTELFSESNGARK---DATKVLVVITDGESHDdpLLKDVIPQAEREGIIRYAIGVgghfQRENsREELKTIA 157

                         170
                  ....*....|....*
gi 1988312935 186 SPPLDEHVFLVESFD 200
Cdd:cd01469   158 SKPPEEHFFNVTDFA 172
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 344-504 2.17e-31

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 119.21  E-value: 2.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEY-MERGT 422
Cdd:cd00198     1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKgLGGGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 423 MTGLALRHMVEHSFSEAQGarpralNVPRVGLVFTDGRSQDD---ISVWAARAKEEGIVMYAVGVG-KAVEAELREIASE 498
Cdd:cd00198    81 NIGAALRLALELLKSAKRP------NARRVIILLTDGEPNDGpelLAEAARELRKLGITVYTIGIGdDANEDELKEIADK 154


                  ....*.
gi 1988312935 499 PAELHV 504
Cdd:cd00198   155 TTGGAV 160
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 33-194 8.89e-30

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 114.97  E-value: 8.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLA-QGT 111
Cdd:cd00198     1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKGLgGGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 112 MTGLAIQYAMNVAFSVAEGARppeervPRVAVIVTDGRPQD---RVAEVAAQARARGIEIYAVGV-QRADVGSLRAMASP 187
Cdd:cd00198    81 NIGAALRLALELLKSAKRPNA------RRVIILLTDGEPNDgpeLLAEAARELRKLGITVYTIGIgDDANEDELKEIADK 154


                  ....*..
gi 1988312935 188 PLDEHVF 194
Cdd:cd00198   155 TTGGAVF 161
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 342-513 3.85e-26

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 105.55  E-value: 3.85e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 342 GHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFL------DVSPEGTRVGLVQFSSRVRTEFPLGR-YGTAAEVKQAVLA 414
Cdd:cd01480     1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFlkdyyrKDPAGSWRVGVVQYSDQQEVEAGFLRdIRNYTSLKEAVDN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 415 VEYMERGTMTGLALRHMVEhsfsEAQGARPRALNvpRVGLVFTDGRSQ----DDISVWAARAKEEGIVMYAVGVGKAVEA 490
Cdd:cd01480    81 LEYIGGGTFTDCALKYATE----QLLEGSHQKEN--KFLLVITDGHSDgspdGGIEKAVNEADHLGIKIFFVAVGSQNEE 154

                         170       180
                  ....*....|....*....|...
gi 1988312935 491 ELREIASEPAELHvsYAPDFGTM 513
Cdd:cd01480   155 PLSRIACDGKSAL--YRENFAEL 175
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 33-173 5.51e-25

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 101.32  E-value: 5.51e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPfEFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQS--VFPLRAFSRREDMERAIRDLVPLAQG 110
Cdd:cd01476     1 LDLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQrvRFNLPKHNDGEELLEKVDNLRFIGGT 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312935 111 TMTGLAIQYAMNVaFSVAEGARppeERVPRVAVIVTDGRPQDRVAEVAAQARAR-GIEIYAVGV 173
Cdd:cd01476    80 TATGAAIEVALQQ-LDPSEGRR---EGIPKVVVVLTDGRSHDDPEKQARILRAVpNIETFAVGT 139
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 345-496 1.06e-24

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 100.55  E-value: 1.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQnFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRT--EFPLGRYGTAAEVKQAVLAVEYMERGT 422
Cdd:cd01476     2 DLLFVLDSSGSVRGK-FEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQrvRFNLPKHNDGEELLEKVDNLRFIGGTT 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312935 423 MTGLALRHMVEHsFSEAQGARPralNVPRVGLVFTDGRSQDDISVWAARAKEE-GIVMYAVGVG---KAVEAELREIA 496
Cdd:cd01476    81 ATGAAIEVALQQ-LDPSEGRRE---GIPKVVVVLTDGRSHDDPEKQARILRAVpNIETFAVGTGdpgTVDTEELHSIT 154
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 344-496 1.19e-18

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 83.97  E-value: 1.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQN-FELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYG-----TAAEVKQAVLAVEY 417
Cdd:cd01471     1 LDLYLLVDGSGSIGYSNwVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNstnkdLALNAIRALLSLYY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 418 MERGTMTGLALRHMVEHSFsEAQGARPralNVPRVGLVFTDGRSQDDI-SVWAARA-KEEGIVMYAVGVGKAVE-AELRE 494
Cdd:cd01471    81 PNGSTNTTSALLVVEKHLF-DTRGNRE---NAPQLVIIMTDGIPDSKFrTLKEARKlRERGVIIAVLGVGQGVNhEENRS 156


                  ..
gi 1988312935 495 IA 496
Cdd:cd01471   157 LV 158
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 31-175 1.26e-18

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 83.97  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  31 GPLDLVFVIDSSRSVRPFEFET----MRQFLMGLLRGLNVGPNA--TRVGVIQYSSQVQSVFP-LRAFSRREDMERAIRD 103
Cdd:cd01480     1 GPVDITFVLDSSESVGLQNFDItknfVKRVAERFLKDYYRKDPAgsWRVGVVQYSDQQEVEAGfLRDIRNYTSLKEAVDN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1988312935 104 LVPLAQGTMTGLAIQYAMNVafsVAEGARPPEErvpRVAVIVTDGRPQ---DRVAEVAAQ-ARARGIEIYAVGVQR 175
Cdd:cd01480    81 LEYIGGGTFTDCALKYATEQ---LLEGSHQKEN---KFLLVITDGHSDgspDGGIEKAVNeADHLGIKIFFVAVGS 150
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 32-185 4.87e-18

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 84.22  E-value: 4.87e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  32 PLDLVFVIDSSRSVR---PFEF--ETMRQFLMGLLRGlnvgpnaTRVGVIQYSSQVQSVFPLRafSRREDMERAIRDLVP 106
Cdd:COG1240    92 GRDVVLVVDASGSMAaenRLEAakGALLDFLDDYRPR-------DRVGLVAFGGEAEVLLPLT--RDREALKRALDELPP 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 107 lAQGTMTGLAIQYAMNVAFSVAEGARppeervpRVAVIVTDGRP---QDRVAEVAAQARARGIEIYAVGV--QRADVGSL 181
Cdd:COG1240   163 -GGGTPLGDALALALELLKRADPARR-------KVIVLLTDGRDnagRIDPLEAAELAAAAGIRIYTIGVgtEAVDEGLL 234


                  ....
gi 1988312935 182 RAMA 185
Cdd:COG1240   235 REIA 238
YfbK COG2304
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ...
 32-173 2.41e-17

Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];


Pssm-ID: 441879 [Multi-domain]  Cd Length: 289  Bit Score: 82.84  E-value: 2.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  32 PLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGpnaTRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPlAQGT 111
Cdd:COG2304    91 PLNLVFVIDVSGSMSGDKLELAKEAAKLLVDQLRPG---DRVSIVTFAGDARVLLPPTPATDRAKILAAIDRLQA-GGGT 166

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1988312935 112 MTGLAIQYAMNVAfsvaeGARPPEERVPRVaVIVTDGRP------QDRVAEVAAQARARGIEIYAVGV 173
Cdd:COG2304   167 ALGAGLELAYELA-----RKHFIPGRVNRV-ILLTDGDAnvgitdPEELLKLAEEAREEGITLTTLGV 228
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 344-498 8.17e-16

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 77.67  E-value: 8.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQN-FELVKRFVNqivDFLDVSPEGTRVGLVQFSSRVRTEFPLGRygtaaEVKQAVLAVEYMERGT 422
Cdd:COG1240    93 RDVVLVVDASGSMAAENrLEAAKGALL---DFLDDYRPRDRVGLVAFGGEAEVLLPLTR-----DREALKRALDELPPGG 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 423 MT--GLALRHMVEHsFSEAQGARPRALnvprvgLVFTDGR---SQDDISVWAARAKEEGIVMYAVGVGKAV--EAELREI 495
Cdd:COG1240   165 GTplGDALALALEL-LKRADPARRKVI------VLLTDGRdnaGRIDPLEAAELAAAAGIRIYTIGVGTEAvdEGLLREI 237


                  ...
gi 1988312935 496 ASE 498
Cdd:COG1240   238 AEA 240
VWA_2 pfam13519
von Willebrand factor type A domain;
346-447 9.79e-14

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 67.32  E-value: 9.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 346 LVLLVDGSKSVR-----PQNFELVKRFVNQIVDFLDvspeGTRVGLVQFSSRVRTEFPLGRygTAAEVKQAVLAVEYMER 420
Cdd:pfam13519   1 LVFVLDTSGSMRngdygPTRLEAAKDAVLALLKSLP----GDRVGLVTFGDGPEVLIPLTK--DRAKILRALRRLEPKGG 74

                          90       100
                  ....*....|....*....|....*..
gi 1988312935 421 GTMTGLALRHMVEHSFSEAQGARPRAL 447
Cdd:pfam13519  75 GTNLAAALQLARAALKHRRKNQPRRIV 101
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 33-191 1.57e-13

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 69.34  E-value: 1.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPF-EFETMRQFLMGLLRGLNVGPNATRVGVIQYSSQVQSVFPLRAF--SRREDMERAIRDL--VPL 107
Cdd:cd01471     1 LDLYLLVDGSGSIGYSnWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPnsTNKDLALNAIRALlsLYY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 108 AQG-TMTGLAIQYAMNVAFSvaegARPPEERVPRVAVIVTDGRPQD--RVAEVAAQARARGIEIYAVGV-QRADVGSLRA 183
Cdd:cd01471    81 PNGsTNTTSALLVVEKHLFD----TRGNRENAPQLVIIMTDGIPDSkfRTLKEARKLRERGVIIAVLGVgQGVNHEENRS 156


                  ....*...
gi 1988312935 184 MASPPLDE 191
Cdd:cd01471   157 LVGCDPDD 164
VWA_2 pfam13519
von Willebrand factor type A domain;
35-133 1.32e-12

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 64.24  E-value: 1.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  35 LVFVIDSSRSVR-----PFEFETMRQFLMGLLRGLNvgpnATRVGVIQYSSQVQSVFPLRafSRREDMERAIRDLVPLAQ 109
Cdd:pfam13519   1 LVFVLDTSGSMRngdygPTRLEAAKDAVLALLKSLP----GDRVGLVTFGDGPEVLIPLT--KDRAKILRALRRLEPKGG 74

                          90       100
                  ....*....|....*....|....
gi 1988312935 110 GTMTGLAIQYAMNVAFSVAEGARP 133
Cdd:pfam13519  75 GTNLAAALQLARAALKHRRKNQPR 98
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 219-254 9.50e-11

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 56.87  E-value: 9.50e-11
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 219 CAEGTHGCEHHCVNSPGSYFCHCQVGFVLQQDQRSC 254
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 339-499 1.32e-10

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 60.60  E-value: 1.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 339 CReGHVDLVLLVDGSKSVRPQNFELVKrFVNQIVDFLdVSPeGTRVGLVQFSSRVRTEFPLGRYGTA----AEVKQAVLA 414
Cdd:cd01474     1 CA-GHFDLYFVLDKSGSVAANWIEIYD-FVEQLVDRF-NSP-GLRFSFITFSTRATKILPLTDDSSAiikgLEVLKKVTP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 415 V--EYMERGtmtglaLRHMVEHSFSEAQGARpralNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAVGVGKAV 488
Cdd:cd01474    77 SgqTYIHEG------LENANEQIFNRNGGGR----ETVSVIIALTDGQLLLNGHKYpeheAKLSRKLGAIVYCVGVTDFL 146

                         170
                  ....*....|.
gi 1988312935 489 EAELREIASEP 499
Cdd:cd01474   147 KSQLINIADSK 157
TerY COG4245
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
32-187 2.61e-10

Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];


Pssm-ID: 443387 [Multi-domain]  Cd Length: 196  Bit Score: 59.94  E-value: 2.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  32 PLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNAT---RVGVIQYSSQVQSVFPLrafSRREDMEraIRDLVplA 108
Cdd:COG4245     5 RLPVYLLLDTSGSMSGEPIEALNEGLQALIDELRQDPYALetvEVSVITFDGEAKVLLPL---TDLEDFQ--PPDLS--A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 109 QG-TMTGLAIQYAMN-----VAFSVAEGARPpeerVPRVAVIVTDGRPQDRVAEVAAQA-----RARGIEIYAVGVQR-A 176
Cdd:COG4245    78 SGgTPLGAALELLLDlierrVQKYTAEGKGD----WRPVVFLITDGEPTDSDWEAALQRlkdgeAAKKANIFAIGVGPdA 153

                         170
                  ....*....|.
gi 1988312935 177 DVGSLRAMASP 187
Cdd:COG4245   154 DTEVLKQLTDP 164
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 260-295 5.16e-10

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 54.56  E-value: 5.16e-10
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 260 CSFGNHSCQHECVSTPGGPRCHCREGHDLQPDGRSC 295
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_subgroup cd01465
VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 33-173 6.05e-09

VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.


Pssm-ID: 238742 [Multi-domain]  Cd Length: 170  Bit Score: 55.36  E-value: 6.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNvgpNATRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPlAQGTM 112
Cdd:cd01465     1 LNLVFVIDRSGSMDGPKLPLVKSALKLLVDQLR---PDDRLAIVTYDGAAETVLPATPVRDKAAILAAIDRLTA-GGSTA 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1988312935 113 TGLAIQYAMNVAfsvAEGARPpeERVPRVaVIVTDGRPQ------DRVAEVAAQARARGIEIYAVGV 173
Cdd:cd01465    77 GGAGIQLGYQEA---QKHFVP--GGVNRI-LLATDGDFNvgetdpDELARLVAQKRESGITLSTLGF 137
vWA_subgroup cd01465
VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 344-485 2.94e-08

VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.


Pssm-ID: 238742 [Multi-domain]  Cd Length: 170  Bit Score: 53.43  E-value: 2.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDvspEGTRVGLVQFSSRVRTEFPlgryGTAAEVKQAVL-AVEYMERGT 422
Cdd:cd01465     1 LNLVFVIDRSGSMDGPKLPLVKSALKLLVDQLR---PDDRLAIVTYDGAAETVLP----ATPVRDKAAILaAIDRLTAGG 73

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 423 MTGLALRhmVEHSFSEAQ-GARPRALNvpRVgLVFTDGRSQDDISVW------AARAKEEGIVMYAVGVG 485
Cdd:cd01465    74 STAGGAG--IQLGYQEAQkHFVPGGVN--RI-LLATDGDFNVGETDPdelarlVAQKRESGITLSTLGFG 138
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
 301-336 4.97e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 49.16  E-value: 4.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1988312935 301 CNGVDHGCEFQCVSEGLSYRCLCPEGRQLQADGKSC 336
Cdd:pfam14670   1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
vWA_complement_factors cd01470
Complement factors B and C2 are two critical proteases for complement activation. They both ...
 345-504 2.47e-07

Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.


Pssm-ID: 238747 [Multi-domain]  Cd Length: 198  Bit Score: 51.52  E-value: 2.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQNFELVKRFVNQIVDFL---DVSPegtRVGLVQFSSRVR-----TEFplgRYGTAAEVKQAVLAVE 416
Cdd:cd01470     2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKIssyEVSP---RYEIISYASDPKeivsiRDF---NSNDADDVIKRLEDFN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 417 YME----RGTMTGLALrHMVEHSFSEAQGARPRALNVPR-VGLVFTDGRSQ---------DDI------SVWAARAKEEG 476
Cdd:cd01470    76 YDDhgdkTGTNTAAAL-KKVYERMALEKVRNKEAFNETRhVIILFTDGKSNmggsplptvDKIknlvykNNKSDNPREDY 154

                         170       180       190
                  ....*....|....*....|....*....|
gi 1988312935 477 IVMYAVGVGKAVEA-ELREIASE-PAELHV 504
Cdd:cd01470   155 LDVYVFGVGDDVNKeELNDLASKkDNERHF 184
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 344-524 2.06e-06

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 48.48  E-value: 2.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 344 VDLVLLVDGSKSVRPQNFELVKRF--VNQIV-DFLDvSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMER 420
Cdd:cd01467     3 RDIMIALDVSGSMLAQDFVKPSRLeaAKEVLsDFID-RRENDRIGLVVFAGAAFTQAPLTLDRESLKELLEDIKIGLAGQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 421 GTMTG----LALRHMVEhsfSEAQGarpralnvpRVGLVFTDGRS-QDDIS-VWAAR-AKEEGIVMYAVGVGKaveaelr 493
Cdd:cd01467    82 GTAIGdaigLAIKRLKN---SEAKE---------RVIVLLTDGENnAGEIDpATAAElAKNKGVRIYTIGVGK------- 142

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1988312935 494 eiaSEPAELHV-SYAPDFGTMTHLLENLRGSI 524
Cdd:cd01467   143 ---SGSGPKPDgSTILDEDSLVEIADKTGGRI 171
EGF_CA smart00179
Calcium-binding EGF-like domain;
216-254 1.39e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.23  E-value: 1.39e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1988312935  216 IDLCAEGtHGCEHH--CVNSPGSYFCHCQVGFvlqQDQRSC 254
Cdd:smart00179   2 IDECASG-NPCQNGgtCVNTVGSYRCECPPGY---TDGRNC 38
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 34-173 6.05e-05

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 43.86  E-value: 6.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  34 DLVFVIDSSRS------VRPFEFETMRQFLMGLLRGLNvgpnATRVGVIQYSSQVQSVFPLRAfsRREDMERAIRDLVP- 106
Cdd:cd01467     4 DIMIALDVSGSmlaqdfVKPSRLEAAKEVLSDFIDRRE----NDRIGLVVFAGAAFTQAPLTL--DRESLKELLEDIKIg 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312935 107 -LAQGTMTGLAIQYAMNVaFSVAEGarppeerVPRVAVIVTDGR------PQDRVAEVAAqarARGIEIYAVGV 173
Cdd:cd01467    78 lAGQGTAIGDAIGLAIKR-LKNSEA-------KERVIVLLTDGEnnageiDPATAAELAK---NKGVRIYTIGV 140
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 31-203 6.86e-05

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 44.04  E-value: 6.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  31 GPLDLVFVIDSSRSVRPFEFEtMRQFLMGLLRGLNvGPNaTRVGVIQYSSQVQSVFPLRAFSRREDME-RAIRDLVPLAQ 109
Cdd:cd01474     3 GHFDLYFVLDKSGSVAANWIE-IYDFVEQLVDRFN-SPG-LRFSFITFSTRATKILPLTDDSSAIIKGlEVLKKVTPSGQ 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 110 gTMTGLAIQYAMNVAFSVAEGARppeeRVPRVAVIVTDGRPQDRV----AEVAAQARARGIEIYAVGVQRADVGSLRAMA 185
Cdd:cd01474    80 -TYIHEGLENANEQIFNRNGGGR----ETVSVIIALTDGQLLLNGhkypEHEAKLSRKLGAIVYCVGVTDFLKSQLINIA 154

                         170
                  ....*....|....*....
gi 1988312935 186 SPPldEHVFLV-ESFDLIQ 203
Cdd:cd01474   155 DSK--EYVFPVtSGFQALS 171
vWA_subfamily cd01464
VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 341-502 7.07e-05

VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have no assigned function. This subfamily is typified by the presence of a conserved MIDAS motif.


Pssm-ID: 238741 [Multi-domain]  Cd Length: 176  Bit Score: 43.87  E-value: 7.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 341 EGHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSP---EGTRVGLVQFSSRVRTEFPLgrygTAAEvKQAVLAVEy 417
Cdd:cd01464     1 MRRLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPyalESVEISVITFDSAARVIVPL----TPLE-SFQPPRLT- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 418 MERGTMTGLALR---HMVEHSFSEAQGA-----RPralnvprvgLVF--TDGRSQDDISVWAARAKEEG---IVMYAVGV 484
Cdd:cd01464    75 ASGGTSMGAALElalDCIDRRVQRYRADqkgdwRP---------WVFllTDGEPTDDLTAAIERIKEARdskGRIVACAV 145

                         170
                  ....*....|....*....
gi 1988312935 485 GKAVEAE-LREIASEPAEL 502
Cdd:cd01464   146 GPKADLDtLKQITEGVPLL 164
vWA_subfamily cd01464
VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 33-201 8.62e-05

VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have no assigned function. This subfamily is typified by the presence of a conserved MIDAS motif.


Pssm-ID: 238741 [Multi-domain]  Cd Length: 176  Bit Score: 43.48  E-value: 8.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNATR---VGVIQYSSQVQSVFPLrafsrrEDMERAIRDLVPLAQ 109
Cdd:cd01464     4 LPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALEsveISVITFDSAARVIVPL------TPLESFQPPRLTASG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 110 GTMTGLAIQYAM-----NVAFSVAEGA---RPpeervprVAVIVTDGRPQDRV---AEVAAQARARGIEIYAVGV-QRAD 177
Cdd:cd01464    78 GTSMGAALELALdcidrRVQRYRADQKgdwRP-------WVFLLTDGEPTDDLtaaIERIKEARDSKGRIVACAVgPKAD 150

                         170       180
                  ....*....|....*....|....*.
gi 1988312935 178 VGSLRAMAS--PPLDEHVFLVESFDL 201
Cdd:cd01464   151 LDTLKQITEgvPLLDDALSGLNFFKW 176
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 216-248 9.15e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.93  E-value: 9.15e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1988312935 216 IDLCAEGtHGCEHH--CVNSPGSYFCHCQVGFVLQ 248
Cdd:cd00054     2 IDECASG-NPCQNGgtCVNTVGSYRCSCPPGYTGR 35
vWA_CTRP cd01473
CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an ...
 345-496 1.46e-04

CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.


Pssm-ID: 238750 [Multi-domain]  Cd Length: 192  Bit Score: 43.07  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 345 DLVLLVDGSKSVRPQNFEL-VKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLG---RYgtaaEVKQAVLAVEYMER 420
Cdd:cd01473     2 DLTLILDESASIGYSNWRKdVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSdeeRY----DKNELLKKINDLKN 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935 421 GTMTGL------ALRHMVEHSFseaqGARPRALNVPRVGLVFTDG----RSQDDISVWAARAKEEGIVMYAVGVGKAVEA 490
Cdd:cd01473    78 SYRSGGetyiveALKYGLKNYT----KHGNRRKDAPKVTMLFTDGndtsASKKELQDISLLYKEENVKLLVVGVGAASEN 153


                  ....*.
gi 1988312935 491 ELREIA 496
Cdd:cd01473   154 KLKLLA 159
vWA_C3HC4_type cd01466
VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 33-172 1.65e-04

VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Membes of this subgroup belong to Zinc-finger family as they are found fused to RING finger domains. The MIDAS motif is not conserved in all the members of this family. The function of vWA domains however is not known.


Pssm-ID: 238743 [Multi-domain]  Cd Length: 155  Bit Score: 42.38  E-value: 1.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1988312935  33 LDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNvgpNATRVGVIQYSSQVQSVFPLR---AFSRREDmERAIRDLVPlAQ 109
Cdd:cd01466     1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLG---DADRLSIVTFSTSAKRLSPLRrmtAKGKRSA-KRVVDGLQA-GG 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1988312935 110 GTMTGLAIQYAMnvafSVAEGARppeERVPRVAVIV-TDGRPQDrvAEVAAQARARGIEIYAVG 172
Cdd:cd01466    76 GTNVVGGLKKAL----KVLGDRR---QKNPVASIMLlSDGQDNH--GAVVLRADNAPIPIHTFG 130
EGF smart00181
Epidermal growth factor-like domain;
219-250 2.44e-03

Epidermal growth factor-like domain;


Pssm-ID: 214544  Cd Length: 35  Bit Score: 35.96  E-value: 2.44e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1988312935  219 CAEGtHGCEHH-CVNSPGSYFCHCQVGFVLQQD 250
Cdd:smart00181   2 CASG-GPCSNGtCINTPGSYTCSCPPGYTGDKR 33
EGF_CA pfam07645
Calcium-binding EGF domain;
216-244 5.69e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 34.52  E-value: 5.69e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1988312935 216 IDLCAEGTHGCEH--HCVNSPGSYFCHCQVG 244
Cdd:pfam07645   2 VDECATGTHNCPAntVCVNTIGSFECRCPDG 32
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
 219-254 7.01e-03

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 34.37  E-value: 7.01e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1988312935 219 CAEgTHGCEHH--CVNSPGSYFCHCQVGFVLqqdQRSC 254
Cdd:cd00053     2 CAA-SNPCSNGgtCVNTPGSYRCVCPPGYTG---DRSC 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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