|
Name |
Accession |
Description |
Interval |
E-value |
| CHAT |
pfam12770 |
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ... |
1272-1595 |
2.72e-64 |
|
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.
Pssm-ID: 432771 [Multi-domain] Cd Length: 287 Bit Score: 221.10 E-value: 2.72e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1272 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1351
Cdd:pfam12770 1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1352 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1427
Cdd:pfam12770 77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1428 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1501
Cdd:pfam12770 146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1502 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1580
Cdd:pfam12770 189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268
|
330
....*....|....*....
gi 1981090764 1581 ----FSHPSNWAGFMLIGS 1595
Cdd:pfam12770 269 rekpRHHPYYWAGFVLVGD 287
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
829-1595 |
1.59e-41 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 165.53 E-value: 1.59e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 829 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 908
Cdd:COG4995 11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 909 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 988
Cdd:COG4995 91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 989 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHD 1068
Cdd:COG4995 171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAAL 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1069 EALAVAERGRTRAFADLLVERQTGQQDSDpyspvTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1148
Cdd:COG4995 251 AAAAAALLALAAALLLLAALAALAAAAAA-----AALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1149 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1228
Cdd:COG4995 326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1229 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1308
Cdd:COG4995 406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1309 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1388
Cdd:COG4995 475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1389 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1462
Cdd:COG4995 540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1463 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1536
Cdd:COG4995 598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1981090764 1537 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1595
Cdd:COG4995 653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
397-656 |
4.08e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 115.10 E-value: 4.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 397 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 476
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 477 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 556
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 557 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 635
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250 260
....*....|....*....|.
gi 1981090764 636 ASAYAALGTAYRMIQKYDKAL 656
Cdd:COG0457 225 LALALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
757-1019 |
3.59e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 109.71 E-value: 3.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 757 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELgeAF 836
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 837 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETnnpt 916
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 917 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 996
Cdd:COG0457 144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
250 260
....*....|....*....|...
gi 1981090764 997 DEAKIRHGLGLSLWASGNLEEAQ 1019
Cdd:COG0457 222 LLLLALALLLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
673-882 |
1.96e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 101.62 E-value: 1.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 673 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 752
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 753 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 832
Cdd:COG0457 72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1981090764 833 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 882
Cdd:COG0457 140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
635-882 |
4.04e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.85 E-value: 4.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 635 EASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 714
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 715 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 794
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 795 mqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLvvAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 874
Cdd:COG0457 142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
....*...
gi 1981090764 875 RALESDAA 882
Cdd:COG0457 218 ALAELLLL 225
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
475-717 |
1.43e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 96.23 E-value: 1.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 475 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 554
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 555 qAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 634
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 635 eASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSL 714
Cdd:COG0457 144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
...
gi 1981090764 715 EAQ 717
Cdd:COG0457 221 ELL 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
398-703 |
1.54e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.11 E-value: 1.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 398 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 475
Cdd:COG2956 8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 476 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 555
Cdd:COG2956 76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 556 AKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlE 635
Cdd:COG2956 144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1981090764 636 ASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQL 703
Cdd:COG2956 212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
232-479 |
5.00e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 94.69 E-value: 5.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 232 ELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIakdlgnKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELME 311
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 312 kaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 391
Cdd:COG0457 78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 392 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 471
Cdd:COG0457 146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
....*...
gi 1981090764 472 IQSEARAL 479
Cdd:COG0457 218 ALAELLLL 225
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
636-987 |
1.64e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.03 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 636 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYtmafkcyeeqldlgqklkdpsle 715
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEY----------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 716 aqvygnmgitkmnmnvmEEAIGYFEQQLAMLQQlsgnesvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 795
Cdd:COG2956 59 -----------------DRAIRIHQKLLERDPD---------RAEALLELAQDYLKAGLLDRAEELLEKLLELDP----- 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 796 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdr 875
Cdd:COG2956 108 -DDAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGP--ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--- 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 876 aleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETNNPTCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 955
Cdd:COG2956 178 ---ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
330 340 350
....*....|....*....|....*....|..
gi 1981090764 956 AAktvsyssLGRTHHALQNYSQAVMYLQEGLR 987
Cdd:COG2956 249 LA-------LADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
602-901 |
1.94e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.64 E-value: 1.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 602 LGDIFICKKDINGAIKFYEQqlglAHQVKDRRLEAsaYAALGTAYRMIQKYDKALGYHTQELEVYQELSdlpgecRAHGH 681
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEE----ALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 682 LAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLE-AQVYgnmgitkmnmnvmeEAIGYFEQQLAMLQQLSgnESVLDRGR 760
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLlAEIY--------------EQEGDWEKAIEVLERLL--KLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 761 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgeafnKAQ 840
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLP 213
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981090764 841 AYGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 901
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
522-819 |
2.03e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.64 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 522 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkYLLSLaqsLNNSQAKFRALGN 601
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 602 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHG 680
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 681 HLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDRgr 760
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKL-----DPDC-ARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPR-- 217
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1981090764 761 aygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQAL 819
Cdd:COG2956 218 ----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
765-1064 |
2.78e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 2.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 765 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGE 844
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQK----LLERDP--DRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 845 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGN 924
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 925 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1004
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1005 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1064
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
198-457 |
5.04e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 91.61 E-value: 5.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 198 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQskdelsEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeAR 277
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 278 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 357
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 358 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 437
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250 260
....*....|....*....|
gi 1981090764 438 THGNLAVAYQALGAHDRALQ 457
Cdd:COG0457 226 ALALLLALRLAALALYQYRA 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
298-561 |
1.75e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.45 E-value: 1.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 298 YHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI---AEDLKDRAAEGRASSNLGIIHQMKGDYDT 374
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaAAAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 375 ALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHD 453
Cdd:COG3914 97 AL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 454 RALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQ 533
Cdd:COG3914 164 EAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALRQACDWE 231
|
250 260
....*....|....*....|....*...
gi 1981090764 534 EAVKYYEQDLALAKDLHDKLSQAKAYCN 561
Cdd:COG3914 232 VYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
442-744 |
1.92e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.94 E-value: 1.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 442 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 521
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 522 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAKFRalgn 601
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 602 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 680
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 681 HLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYgnmgitkMNMNVMEEAIGYFEQQLA 744
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
157-415 |
1.92e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.07 E-value: 1.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 157 RAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAasSALSSLGHVYTAIGDYPNALASHKQCvlLAKQSKDelseA 236
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEK----ALELDPDDA--EALYNLGLAYLRLGRYEEALADYEQA--LELDPDD----A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 237 RELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiem 316
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD----- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 317 rAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQG 396
Cdd:COG0457 146 -ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....*....
gi 1981090764 397 RAYGNMGNAYNALGMYDQA 415
Cdd:COG0457 225 LALALLLALRLAALALYQY 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
241-504 |
3.06e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.09 E-value: 3.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 241 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYA 320
Cdd:COG2956 47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 321 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 400
Cdd:COG2956 115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 401 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 480
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249
|
250 260
....*....|....*....|....
gi 1981090764 481 NLGNFHCSRGEYVQAAPYYEQYLR 504
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
555-805 |
1.66e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 84.29 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 555 QAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 634
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIED------YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 635 eASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 714
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DPDD 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 715 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNR 794
Cdd:COG0457 144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
|
250
....*....|.
gi 1981090764 795 MQDQAKAYRGL 805
Cdd:COG0457 223 LLLALALLLAL 233
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
166-1032 |
1.09e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 87.06 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 166 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALAshkqcvllakqskdELSEARELG-NMGA 244
Cdd:TIGR02917 32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEK--------------ELRKALSLGyPKNQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 245 V-------YIAMGDFENAVQcheqhLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKaiemR 317
Cdd:TIGR02917 92 VlpllaraYLLQGKFQQVLD-----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----S 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 318 AYAGLGHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGR 397
Cdd:TIGR02917 159 LYAKLGLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 398 AygNMGNAYNALGMYDQAVKYHRQELQIsmeVNDRASQASTHGnlAVAYQAlGAHDRALQHYQNHLNIARElrdiQSEAR 477
Cdd:TIGR02917 231 L--ALATILIEAGEFEEAEKHADALLKK---APNSPLAHYLKA--LVDFQK-KNYEDARETLQDALKSAPE----YLPAL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 478 ALSNLGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAK 557
Cdd:TIGR02917 299 LLAGASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 558 AYcnLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLgdiFICKKDINGAIKFYEQQLGLAHQVKDRRLeas 637
Cdd:TIGR02917 364 AA--LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS---KLSQGDPSEAIADLETAAQLDPELGRADL--- 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 638 ayaALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQ---------- 707
Cdd:TIGR02917 436 ---LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdffpaaanla 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 708 ----KLKDPSLEAQVYGNM-GITKMNMNVMeeaigyfeQQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEE 777
Cdd:TIGR02917 507 ridiQEGNPDDAIQRFEKVlTIDPKNLRAI--------LALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYL 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 778 AIKYYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYE 856
Cdd:TIGR02917 579 GKGQLKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP------DSALALLLLADAYAVMKNYA 652
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 857 QAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtnnptcqgrAYGN--LGLTYESLG 933
Cdd:TIGR02917 653 KAITSLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQK 717
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 934 TFERAVVYQEQHLSIAAQmNDLAAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasG 1013
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------A 777
|
890
....*....|....*....
gi 1981090764 1014 NLEEAQHQLYRASALFETI 1032
Cdd:TIGR02917 778 ELYLAQKDYDKAIKHYQTV 796
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
158-424 |
4.10e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.93 E-value: 4.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 158 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQcvLLAKQSKDElsEAR 237
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEK--LLELDPDDA--EAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 238 ELgnMGAVYIAMGDFENAVQCHEQHLKIAKdlgnkrEEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMekaiemR 317
Cdd:COG2956 114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA------R 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 318 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 397
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
250 260
....*....|....*....|....*..
gi 1981090764 398 aygnmgnAYNALGMYDQAVKYHRQELQ 424
Cdd:COG2956 254 -------LLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
186-869 |
6.94e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 80.90 E-value: 6.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 186 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAvqchE 260
Cdd:TIGR02917 178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------IAVLLALATILIEAGEFEEA----E 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 261 QHLKIAKDLGNKREEARAYSNLgsaYHYRR-NFDKAMSYHNYVLELAQELMEkaieMRAYAGLGHAARcmQDLERAKQYH 339
Cdd:TIGR02917 248 KHADALLKKAPNSPLAHYLKAL---VDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQAYQYL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 340 EQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKY- 418
Cdd:TIGR02917 319 NQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAEYl 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 419 ------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQSEARA 478
Cdd:TIGR02917 387 akateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQPDNAS 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 479 LSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDLHDKLS 554
Cdd:TIGR02917 467 LHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRAILALA 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 555 QAKAYCN--------LGLAFKA-------LLNFSKAEECQKYL---LSLAQS-LNNSQAKFRALGNLGDIFICKKDINGA 615
Cdd:TIGR02917 541 GLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAGDLNKA 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 616 IKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMA 695
Cdd:TIGR02917 621 VSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAKRTESA 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 696 FKCYEEQLDlgQKLKDP---SLEAQVYgnmgitkMNMNVMEEAIGYFEQ------------QLAMLQQLSGN-------- 752
Cdd:TIGR02917 689 KKIAKSLQK--QHPKAAlgfELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavktl 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 753 ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghrAMGSLQQ----ALVCFEK 824
Cdd:TIGR02917 760 EAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL-----AWLYLELkdprALEYAER 828
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1981090764 825 rlvvAHELgeAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 869
Cdd:TIGR02917 829 ----ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
122-376 |
9.73e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.20 E-value: 9.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 122 LSSAYWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 201
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 202 LGHVYTAIGDYPNALASHKQcvllAKQSKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSN 281
Cdd:COG0457 82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 282 LGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 361
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
250
....*....|....*
gi 1981090764 362 LGIIHQMKGDYDTAL 376
Cdd:COG0457 230 LLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
880-1150 |
1.11e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.20 E-value: 1.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 880 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAkt 959
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 960 vsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1039
Cdd:COG0457 79 --LNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1040 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVL 1119
Cdd:COG0457 137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260 270
....*....|....*....|....*....|.
gi 1981090764 1120 YYSLAAGYLYSWLLAPGAGIVKFHEHYLGEN 1150
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQY 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
619-786 |
1.75e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.19 E-value: 1.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 619 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 697
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 698 CYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 777
Cdd:COG3914 134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198
|
....*....
gi 1981090764 778 AIKYYEQYL 786
Cdd:COG3914 199 AIAAYRRAL 207
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
414-626 |
1.89e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.19 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 414 QAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQ---SEARALSNLGNFHCSRG 490
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAallLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 491 EYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLGLAFKALL 570
Cdd:COG3914 93 RYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 571 NFSKAEECqkYLLSLAQSLNNSQakfrALGNLGDIFICKKDINGAIKFYEQQLGLA 626
Cdd:COG3914 161 RLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
619-922 |
4.72e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.64 E-value: 4.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 619 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKC 698
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 699 YEEQLDLgqklkDPsleaqvygnmgitkmnmnvmeeaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEA 778
Cdd:COG3914 101 YRRALAL-----NP--------------------------------------------DNAEALFNLGNLLLALGRLEEA 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 779 IKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYEQA 858
Cdd:COG3914 132 LAALRRALALN------PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP------DNAEALNNLGNALQDLGRLEEA 199
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 859 ISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAY 922
Cdd:COG3914 200 IAAYRRALELDPD------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
442-708 |
1.52e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.10 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 442 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 521
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 522 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGN 601
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 602 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 680
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218
|
250 260
....*....|....*....|....*...
gi 1981090764 681 HLAAVYMALGKYTmAFKCYEEQLDLGQK 708
Cdd:COG3914 219 NLLFALRQACDWE-VYDRFEELLAALAR 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
636-787 |
4.47e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 4.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 636 ASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSl 714
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPD- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 715 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 787
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
716-791 |
2.81e-11 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 61.25 E-value: 2.81e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 716 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
386-548 |
7.01e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.13 E-value: 7.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 386 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 465
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 466 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 545
Cdd:COG4783 64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
...
gi 1981090764 546 AKD 548
Cdd:COG4783 136 DPD 138
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
444-1028 |
7.54e-11 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 67.96 E-value: 7.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 444 VAYQALGAHDRALQHYQ---------------------NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQY 502
Cdd:COG3899 655 AAYASLPPEERRALHRRiaraleargpepleerlfelaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERA 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 503 LRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFSKA 575
Cdd:COG3899 732 LELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEA 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 576 EECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALgtAYRMIQKYDKA 655
Cdd:COG3899 810 YEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAA--AAAAAAAAALA 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 656 LGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQvygnmgitkmnmnVMEEA 735
Cdd:COG3899 888 AAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA-------------AAAAL 954
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 736 IGYFEQQLAMLQQLSGNEsvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSL 815
Cdd:COG3899 955 AAALALAAAAAAAAAAAL--AAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 816 QQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEY 895
Cdd:COG3899 1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 896 DTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNY 975
Cdd:COG3899 1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAA 1191
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 976 SQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1028
Cdd:COG3899 1192 AAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
727-1030 |
7.98e-11 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 66.18 E-value: 7.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 727 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 806
Cdd:pfam17874 12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 807 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 883
Cdd:pfam17874 88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 884 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 948
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 949 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1028
Cdd:pfam17874 246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309
|
..
gi 1981090764 1029 FE 1030
Cdd:pfam17874 310 AE 311
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
386-547 |
1.31e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 386 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 465
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 466 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 545
Cdd:COG5010 84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151
|
..
gi 1981090764 546 AK 547
Cdd:COG5010 152 SP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
757-879 |
3.73e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 3.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 757 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeaf 836
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1981090764 837 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 879
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
808-1090 |
5.29e-10 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 65.26 E-value: 5.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 808 GHRAM--GSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI-------ARDMKDRALE 878
Cdd:COG3899 712 ARRALarGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPAS 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 879 SDAACGLGGVYqqMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAk 958
Cdd:COG3899 792 ARAYANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAAL- 868
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 959 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQL 1038
Cdd:COG3899 869 ALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAA 948
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1981090764 1039 STDYKLSLFDlqtssYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQ 1090
Cdd:COG3899 949 AAAAALAAAL-----ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAA 995
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
765-911 |
5.54e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 5.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 765 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGE 844
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 845 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 911
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
180-506 |
6.64e-10 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 64.88 E-value: 6.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 180 RHQLVlamklkdREAASSALSS--------------LGHVYTAIGDYPNALASHkqcvLLAKQSKDELSEARELGnmGAV 245
Cdd:COG3899 648 RHDLV-------REAAYASLPPeerralhrriaralEARGPEPLEERLFELAHH----LNRAGERDRAARLLLRA--ARR 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 246 YIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIE-----MRAYA 320
Cdd:COG3899 715 ALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRhgnppASARA 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 321 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 400
Cdd:COG3899 795 YANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 401 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 480
Cdd:COG3899 875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953
|
330 340
....*....|....*....|....*.
gi 1981090764 481 NLGNFHCSRGEYVQAAPYYEQYLRLA 506
Cdd:COG3899 954 LAAALALAAAAAAAAAAALAAAAAAA 979
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
445-551 |
8.12e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 8.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 445 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 524
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 1981090764 525 AHYCLGNYQEAVKYYEQDLALAKDLHD 551
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
353-508 |
8.47e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 8.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 353 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 432
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 433 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:COG4783 71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
133-382 |
9.15e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 9.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 133 EKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAmklkdrEAASSALSSLGHVYTAIGDY 212
Cdd:COG3914 55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGRL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 213 PNALASHKQCVLLakqsKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNF 292
Cdd:COG3914 129 EEALAALRRALAL----NPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 293 DKAMSYHNYVLELAQELmekaiemraYAGLGHAARCMQDLERAKQYHEQQlgiaEDLKDRAAEGRASSNLGIIHQMKGDY 372
Cdd:COG3914 197 EEAIAAYRRALELDPDN---------ADAHSNLLFALRQACDWEVYDRFE----ELLAALARGPSELSPFALLYLPDDDP 263
|
250
....*....|
gi 1981090764 373 DTALKLHKTH 382
Cdd:COG3914 264 AELLALARAW 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
829-1028 |
1.18e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.86 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 829 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 908
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 909 aeetnNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmnDLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRL 988
Cdd:COG3914 108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNP---DFAE---AYLNLGEALRRLGRLEEAIAALRRALEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1981090764 989 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1028
Cdd:COG3914 176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
397-468 |
1.22e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.63 E-value: 1.22e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 397 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 468
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
839-911 |
1.95e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.86 E-value: 1.95e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981090764 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 911
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
431-577 |
2.29e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 431 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 510
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 511 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEE 577
Cdd:COG5010 87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
269-556 |
2.37e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 62.95 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 269 LGNKREEARAYsNLGSAYHYRRN--FDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI- 345
Cdd:COG3899 697 RAGERDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAr 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 346 ------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYH 419
Cdd:COG3899 776 alaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELL 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 420 RQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYV 493
Cdd:COG3899 854 REALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALAL 933
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 494 QAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 556
Cdd:COG3899 934 AAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
11-383 |
3.52e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.13 E-value: 3.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 11 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVgmveaamkspmrdsleptyqqlqkmkldkspfvvvsvvgqellt 90
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-------------------------------------------- 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 91 aghhgasvvvleaalkigtcslklrgsvfsALSSAYWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFFSKG 170
Cdd:COG2956 47 ------------------------------ALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQDYLKAG 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 171 NYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMG 250
Cdd:COG2956 91 LLDRAEE------LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN------AHAYCELAELYLEQG 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 251 DFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAmsyhnyvLELAQELMEKAIE-MRAYAGLGHAARCM 329
Cdd:COG2956 159 DYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEA-------IAALERALEQDPDyLPALPRLAELYEKL 225
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 330 QDLERAKQYHEQQLGIAEDLKDRAAegrassnLGIIHQMKGDYDTALKLHKTHL 383
Cdd:COG2956 226 GDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQL 272
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
434-508 |
4.89e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.09 E-value: 4.89e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 434 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
838-989 |
5.89e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.74 E-value: 5.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 838 KAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETNNPt 916
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDEP- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 917 cqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLaaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 989
Cdd:COG4783 73 ---EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
405-511 |
6.17e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 6.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 405 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 484
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 1981090764 485 FHCSRGEYVQAAPYYEQYLRLAPDLQD 511
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1970-2218 |
1.11e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 60.70 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1970 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2047
Cdd:pfam05109 397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2048 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2127
Cdd:pfam05109 477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2128 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2207
Cdd:pfam05109 540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610
|
250
....*....|.
gi 1981090764 2208 YSSAGSARSSP 2218
Cdd:pfam05109 611 GTSSTPVVTSP 621
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
667-789 |
1.40e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 667 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQqlaML 746
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1981090764 747 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 789
Cdd:COG4235 79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
682-826 |
1.42e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 682 LAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRA 761
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981090764 762 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 826
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
716-872 |
1.59e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 716 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 795
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 796 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 872
Cdd:COG4783 70 -DEPEARLNLGLALLKAGDYDEALALLEK----ALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
839-1076 |
1.80e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.01 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETNNPTCQ 918
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 919 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 998
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNP--DNAEA----LFNLGNLLLALGRLEEALAALRRALALNP------DF 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1981090764 999 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1076
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
239-308 |
2.00e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.16 E-value: 2.00e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1981090764 239 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL--GNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 308
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
172-341 |
2.08e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.62 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 172 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvLLAKQSkdelSEARELGNMGAVYIAMGD 251
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRR--ALALNP----DNAEALFNLGNLLLALGR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 252 FENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQD 331
Cdd:COG3914 128 LEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGR 195
|
170
....*....|
gi 1981090764 332 LERAKQYHEQ 341
Cdd:COG3914 196 LEEAIAAYRR 205
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
625-786 |
2.29e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 2.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 625 LAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLD 704
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 705 LgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQ 784
Cdd:COG5010 83 L-----DPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQR 147
|
..
gi 1981090764 785 YL 786
Cdd:COG5010 148 AL 149
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
172-506 |
2.60e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 59.87 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 172 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYiaMGD 251
Cdd:COG3899 728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 252 FENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQD 331
Cdd:COG3899 806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 332 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 405
Cdd:COG3899 886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 406 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 485
Cdd:COG3899 966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044
|
330 340
....*....|....*....|.
gi 1981090764 486 HCSRGEYVQAAPYYEQYLRLA 506
Cdd:COG3899 1045 LLAALAAAAAAAAAAAALAAA 1065
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
768-871 |
2.66e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 768 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 847
Cdd:COG3063 1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67
|
90 100
....*....|....*....|....
gi 1981090764 848 LHSQLGNYEQAISCLERQLNIARD 871
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
10-340 |
4.41e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.55 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 10 AYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMveaamkspmrdsleptyqqlqkmkldkspfvvvsvvGQELL 89
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL------------------------------------GLAYL 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 90 TAGHHGASVVVLEAALKIgtcslklrgsvfsalssaywslgntekstgymqqDLDVAktlgdqtgecRAHGNLGSAFFSK 169
Cdd:COG0457 54 RLGRYEEALADYEQALEL----------------------------------DPDDA----------EALNNLGLALQAL 89
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 170 GNYREALTNHRHqlvlAMKLKDREAasSALSSLGHVYTAIGDYPNALASHKQCVLLakqskdELSEARELGNMGAVYIAM 249
Cdd:COG0457 90 GRYEEALEDYDK----ALELDPDDA--EALYNLGLALLELGRYDEAIEAYERALEL------DPDDADALYNLGIALEKL 157
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 250 GDFENAVQCHEQHLKIAKDLgnkREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCM 329
Cdd:COG0457 158 GRYEEALELLEKLEAAALAA---LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
|
330
....*....|.
gi 1981090764 330 QDLERAKQYHE 340
Cdd:COG0457 235 LAALALYQYRA 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
274-428 |
4.96e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 4.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 274 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYAGLGHAARCMQDLERA-KQYHEQqlgiaedLKDR 352
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAiVLLHEA-------LELD 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 353 AAEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 428
Cdd:COG4783 69 PDEPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
797-871 |
5.26e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 52.00 E-value: 5.26e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 797 DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAF--NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 871
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
357-425 |
6.52e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.62 E-value: 6.52e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981090764 357 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 425
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
396-508 |
9.14e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 9.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 396 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 475
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84
|
90 100 110
....*....|....*....|....*....|...
gi 1981090764 476 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:COG4235 85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
195-268 |
1.06e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.23 E-value: 1.06e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 195 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 268
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
411-645 |
1.45e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 54.54 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 411 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 483
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 484 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 563
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 564 LAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALG 643
Cdd:COG4785 149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221
|
..
gi 1981090764 644 TA 645
Cdd:COG4785 222 LA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
554-705 |
2.60e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.12 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 554 SQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrr 633
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1981090764 634 lEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDL 705
Cdd:COG4783 71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
685-794 |
2.88e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 2.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 685 VYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 764
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL-----DPD-NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64
|
90 100 110
....*....|....*....|....*....|
gi 1981090764 765 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 794
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
2067-2224 |
5.16e-07 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 55.31 E-value: 5.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2067 GQVSKSNNPEDgVQAPSSTAvfRASETSAFSRPVLSHQKSQPSPVTvkPKPPARSSSLPKVSSGYSSPTTSEMSikdsPS 2146
Cdd:pfam05109 447 GLPSSTHVPTN-LTAPASTG--PTVSTADVTSPTPAGTTSGASPVT--PSPSPRDNGTESKAPDMTSPTSAVTT----PT 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2147 QHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSP---ADAPD 2223
Cdd:pfam05109 518 PNATSPTPAVTTPTPNATSPTLG---KTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPT 594
|
.
gi 1981090764 2224 I 2224
Cdd:pfam05109 595 V 595
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
881-951 |
7.09e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 48.92 E-value: 7.09e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 881 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 951
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
522-668 |
8.91e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.58 E-value: 8.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 522 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGN 601
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 602 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 668
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
844-1080 |
9.61e-07 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 54.54 E-value: 9.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 844 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 912
Cdd:NF040586 439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 913 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 986
Cdd:NF040586 514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 987 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1063
Cdd:NF040586 590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659
|
250
....*....|....*..
gi 1981090764 1064 LGHHDEALAVAERGRTR 1080
Cdd:NF040586 660 LGDADEARELAREVLDR 676
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
848-950 |
9.83e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 9.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 848 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETNNPtcqgRAYGNLGL 927
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67
|
90 100
....*....|....*....|...
gi 1981090764 928 TYESLGTFERAVVYQEQHLSIAA 950
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDP 90
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
398-508 |
1.17e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 477
Cdd:PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1981090764 478 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 508
Cdd:PRK02603 108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
2080-2227 |
1.26e-06 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 54.15 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2080 QAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLPKVSSG-YSSPTTSEMSIKDSPSQHSgrPSP---G 2155
Cdd:pfam05109 423 KAPESTTTSPTLNTTGFAAP--NTTTGLPSSTHVPTNLTAPASTGPTVSTAdVTSPTPAGTTSGASPVTPS--PSPrdnG 498
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 2156 CDSQTSQLDQPLFKLKYPS----SPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSPADAPDIDKL 2227
Cdd:pfam05109 499 TESKAPDMTSPTSAVTTPTpnatSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTL 574
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
961-1030 |
1.31e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 48.15 E-value: 1.31e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1981090764 961 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1030
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
303-466 |
1.41e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 303 LELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 382
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 383 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 462
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 1981090764 463 LNIA 466
Cdd:COG5010 149 LGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
183-346 |
1.47e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 183 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQH 262
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 263 LKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKAIEmrAYAGLGHAARCMQDLERAKQYHEQQ 342
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALSPDNPN--AYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 1981090764 343 LGIA 346
Cdd:COG5010 149 LGTS 152
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
519-552 |
1.51e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 46.38 E-value: 1.51e-06
10 20 30
....*....|....*....|....*....|....
gi 1981090764 519 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 552
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
463-626 |
1.63e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 463 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 542
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 543 LALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQ 622
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 1981090764 623 LGLA 626
Cdd:COG5010 149 LGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
193-348 |
1.87e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 193 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelSEARELgnMGAVYIAMGDFENAVQCHEQHLKIAKDlgnk 272
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 273 reEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAED 348
Cdd:COG4783 71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
597-668 |
2.00e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.38 E-value: 2.00e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 597 RALGNLGDIFICKKDINGAIKFYEQQLGLAHQV--KDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 668
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
10-264 |
2.15e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.65 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 10 AYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLDKSPfvVVSVVGQELL 89
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE--ALRLLAEIYE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 90 TAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFFSK 169
Cdd:COG2956 122 QEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKALKLDPDCA------RALLLLAELYLEQ 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 170 GNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARelgnmgaVYIAM 249
Cdd:COG2956 192 GDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD-------LLERK 258
|
250
....*....|....*
gi 1981090764 250 GDFENAVQCHEQHLK 264
Cdd:COG2956 259 EGLEAALALLERQLR 273
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
841-876 |
2.15e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.99 E-value: 2.15e-06
10 20 30
....*....|....*....|....*....|....*.
gi 1981090764 841 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 876
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
365-471 |
2.93e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 365 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 444
Cdd:COG3063 1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 1981090764 445 AYQALGAHDRALQHYQNHLNIARELRD 471
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
761-793 |
3.06e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.61 E-value: 3.06e-06
10 20 30
....*....|....*....|....*....|...
gi 1981090764 761 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 793
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
848-1072 |
3.57e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 50.30 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 848 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQ--IAEETNNPTcQGRAYGNL 925
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAerIDRALALPD-LAQLYYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 926 GLTYESLGTFERAVvyqeQHLSIAAQMN-DLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHG 1004
Cdd:COG4785 80 GVAYDSLGDYDLAI----ADFDQALELDpDLAE---AYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLN 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 1005 LGLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1072
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
733-842 |
3.63e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.06 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 733 EEAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAM 812
Cdd:COG1729 10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|
gi 1981090764 813 GSLQQALVCFEKrLVVAHELGEAFNKAQAY 842
Cdd:COG1729 81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
520-588 |
3.78e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.61 E-value: 3.78e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1981090764 520 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQS 588
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
797-901 |
4.60e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 4.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 797 DQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdra 876
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALALDPD----- 83
|
90 100
....*....|....*....|....*
gi 1981090764 877 lESDAACGLGGVYQQMGEYDTALQY 901
Cdd:COG4235 84 -NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
316-388 |
5.07e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.23 E-value: 5.07e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981090764 316 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 388
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
245-349 |
5.58e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 5.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 245 VYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvlelaqelmEKAIEM-----RAY 319
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL------------EKALKLdpnnaEAL 62
|
90 100 110
....*....|....*....|....*....|
gi 1981090764 320 AGLGHAARCMQDLERAKQYHEQQLGIAEDL 349
Cdd:COG3063 63 LNLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
488-589 |
5.98e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 5.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 488 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 567
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70
|
90 100
....*....|....*....|..
gi 1981090764 568 ALLNFSKAEECQKYLLSLAQSL 589
Cdd:COG3063 71 ELGDYDEALAYLERALELDPSA 92
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
920-991 |
6.17e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.23 E-value: 6.17e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 920 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 991
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
760-791 |
6.29e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.72 E-value: 6.29e-06
10 20 30
....*....|....*....|....*....|..
gi 1981090764 760 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
760-791 |
1.03e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 43.92 E-value: 1.03e-05
10 20 30
....*....|....*....|....*....|..
gi 1981090764 760 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
789-949 |
1.07e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 789 AQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI 868
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 869 ARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEetNNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSI 948
Cdd:COG5010 84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP--DNP----NAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
.
gi 1981090764 949 A 949
Cdd:COG5010 152 S 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
156-228 |
1.20e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.46 E-value: 1.20e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981090764 156 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 228
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1992-2298 |
1.50e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 50.45 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1992 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2065
Cdd:PHA03378 520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2066 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2137
Cdd:PHA03378 597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2138 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2206
Cdd:PHA03378 671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2207 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2286
Cdd:PHA03378 746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816
|
330
....*....|..
gi 1981090764 2287 EEGVDKLELKEL 2298
Cdd:PHA03378 817 QQGPTKQILRQL 828
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
733-826 |
1.53e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 733 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAM 812
Cdd:COG5010 71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALA------LSPDNPNAYSNLAALLLSL 135
|
90
....*....|....
gi 1981090764 813 GSLQQALVCFEKRL 826
Cdd:COG5010 136 GQDDEAKAALQRAL 149
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
543-705 |
1.53e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 543 LALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 622
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 623 LGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQ 702
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
...
gi 1981090764 703 LDL 705
Cdd:COG5010 149 LGT 151
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
686-787 |
1.56e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.14 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 686 YMALGKYTMAFKCYEEQLdlgQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDrgrAYGNL 765
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFL---KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPD---ALLKL 73
|
90 100
....*....|....*....|..
gi 1981090764 766 GDCYEALGDYEEAIKYYEQYLS 787
Cdd:COG1729 74 GLSYLELGDYDKARATLEELIK 95
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
888-992 |
1.67e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 888 VYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLAAktvsYSSLGR 967
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67
|
90 100
....*....|....*....|....*
gi 1981090764 968 THHALQNYSQAVMYLQEGLRLAEQL 992
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
755-909 |
1.69e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 755 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGE 834
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQLDP 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981090764 835 afNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 909
Cdd:COG5010 86 --NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
760-784 |
2.17e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.20 E-value: 2.17e-05
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1980-2209 |
2.26e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 49.77 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1980 SSKGSISTPNSPVKMTlIPSPNSPFQKVGKLASSDTGESDQSSTETDstvKSQEESNPKlDPQE------LAQKILEETQ 2053
Cdd:pfam03154 57 SKAESMKKSSKKIKEE-APSPLKSAKRQREKGASDTEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGS 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2054 SHLIAVERLQRSGGQVSKSnnPEDGVQAPSSTAVFRASETSAfsrPVLSHQKSQPSPVTVKPKPPARSSSLPKVSSGYSS 2133
Cdd:pfam03154 132 SDPKDIDQDNRSTSPSIPS--PQDNESDSDSSAQQQILQTQP---PVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 2134 PTTSEMSIKDSPSQHSGRPSP-GCDSQTSQLDQPlfKLKYPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYS 2209
Cdd:pfam03154 207 PPQGSPATSQPPNQTQSTAAPhTLIQQTPTLHPQ--RLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHS 281
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
829-1090 |
2.30e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 49.86 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 829 AHELGEAfnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhqldlqi 908
Cdd:COG3899 698 AGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL------- 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 909 aeetnnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHhaLQNYSQAVMYLQEGLRL 988
Cdd:COG3899 768 --------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGELALAL 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 989 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETI-----RHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1063
Cdd:COG3899 820 AERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETgdaalALLALAAAAAAAAAAAALAAAAAAAARLLAA 899
|
250 260
....*....|....*....|....*..
gi 1981090764 1064 LGHHDEALAVAERGRTRAFADLLVERQ 1090
Cdd:COG3899 900 AAAALAAAAAAAALAAAELARLAAAAA 926
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
478-513 |
2.70e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.91 E-value: 2.70e-05
10 20 30
....*....|....*....|....*....|....*.
gi 1981090764 478 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 513
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
757-907 |
2.84e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.60 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 757 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRAMGSLQQALvcfekrlvvahelgEAF 836
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAAL--------------EDF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 837 NKA--------QAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL-------ESDAACGL-------GGVYQQMGE 894
Cdd:COG4785 131 DRAleldpdyaYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALwlylaerKLDPEKALallledwATAYLLQGD 210
|
170
....*....|...
gi 1981090764 895 YDTALQYHQLDLQ 907
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
636-708 |
3.26e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 3.26e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1981090764 636 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQK 708
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
609-709 |
3.50e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 609 KKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 688
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71
|
90 100
....*....|....*....|.
gi 1981090764 689 LGKYTMAFKCYEEQLDLGQKL 709
Cdd:COG3063 72 LGDYDEALAYLERALELDPSA 92
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
274-348 |
3.71e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 3.71e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 274 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELM--EKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 348
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
239-272 |
4.60e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.53 E-value: 4.60e-05
10 20 30
....*....|....*....|....*....|....
gi 1981090764 239 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNK 272
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
529-626 |
5.70e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 5.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 529 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEECQKyllslAQSLNNSQAkfRALGNLGDIFIC 608
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71
|
90
....*....|....*...
gi 1981090764 609 KKDINGAIKFYEQQLGLA 626
Cdd:COG3063 72 LGDYDEALAYLERALELD 89
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
733-826 |
5.81e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 733 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRAM 812
Cdd:COG3063 9 EEAEEYYEKALELDP---------DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|....
gi 1981090764 813 GSLQQALVCFEKRL 826
Cdd:COG3063 73 GDYDEALAYLERAL 86
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
255-378 |
7.37e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 7.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 255 AVQCHEQHLKiakdlgNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLER 334
Cdd:COG4235 2 AIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEE 69
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1981090764 335 AKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKL 378
Cdd:COG4235 70 AEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1947-2222 |
7.38e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.24 E-value: 7.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1947 EPLATYQENRNTCFSPDHKQ-PQPGTAGgmrvSVSSKGSISTPNSPVkmtliPSPNSPFQKVGKLASSDTGESDQSSTET 2025
Cdd:PHA03307 85 RSTPTWSLSTLAPASPAREGsPTPPGPS----SPDPPPPTPPPASPP-----PSPAPDLSEMLRPVGSPGPPPAASPPAA 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2026 DStVKSQEESNPKlDPQELAqkileetqSHLIAVERLQRSGGQVSKSNnpedgvqaPSSTAVFRASETSAFSRPVLSHQK 2105
Cdd:PHA03307 156 GA-SPAAVASDAA-SSRQAA--------LPLSSPEETARAPSSPPAEP--------PPSTPPAAASPRPPRRSSPISASA 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2106 SQPSPVtvkpkpPARSSSLPKVSSGYSSPTTSEMSIKDSPSQHSGRPSPGCDSQTSQLDQPLFKLKYPS--SPYSAHISK 2183
Cdd:PHA03307 218 SSPAPA------PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSrpGPASSSSSP 291
|
250 260 270
....*....|....*....|....*....|....*....
gi 1981090764 2184 SPRNMSPSSGHqSPAGSAPSPALSYSSAGSARSSPADAP 2222
Cdd:PHA03307 292 RERSPSPSPSS-PGSGPAPSSPRASSSSSSSRESSSSST 329
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
898-1077 |
7.45e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 898 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsYSSLGRTHHALQNYSQ 977
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 978 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1057
Cdd:COG3914 97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152
|
170 180
....*....|....*....|
gi 1981090764 1058 QRVLVSLGHHDEALAVAERG 1077
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRA 172
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
241-354 |
7.88e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 241 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKamsyhnyvlelAQELMEKAIEM---- 316
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEE-----------AEELLERALALdpdn 84
|
90 100 110
....*....|....*....|....*....|....*....
gi 1981090764 317 -RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 354
Cdd:COG4235 85 pEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
494-626 |
8.93e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 8.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 494 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFS 573
Cdd:COG4235 1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 574 KAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQLGLA 626
Cdd:COG4235 69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
198-316 |
9.37e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 198 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEAR 277
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLERALALDPD------NPE 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1981090764 278 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQE-----LMEKAIEM 316
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAdaparLLEASIAE 130
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
205-311 |
1.26e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 205 VYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQChEQHLKIAKDlgnkreEARAYSNLGS 284
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 1981090764 285 AYHYRRNFDKAMSYHNYVLELAQELME 311
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
329-426 |
1.34e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 329 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 408
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71
|
90
....*....|....*...
gi 1981090764 409 LGMYDQAVKYHRQELQIS 426
Cdd:COG3063 72 LGDYDEALAYLERALELD 89
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
243-380 |
1.41e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 45.68 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 243 GAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLEL----AQELMEKAIemrA 318
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALELdpdyAYAYLNRGI---A 150
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1981090764 319 YAGLGHAARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 380
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
357-565 |
1.65e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 47.22 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 357 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 431
Cdd:NF040586 521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 432 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 506
Cdd:NF040586 601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 507 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 565
Cdd:NF040586 671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
517-548 |
1.70e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.58 E-value: 1.70e-04
10 20 30
....*....|....*....|....*....|..
gi 1981090764 517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
232-548 |
1.71e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.06 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 232 ELSEARELGNMGAVYIA--MGDFENAvqchEQHLKIAKDLGNKREEARAYSnLGSAYHYRRNFDKAmsyhnyvLELAQEL 309
Cdd:COG3071 44 EHSEAPLLAYLLAARAAqaLGDYERR----DEYLAQALELAPEAELAVLLT-RAELLLDQGQAEQA-------LATLEAL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 310 MEKA--------IEMRAYAGLGH---AARCMQDLERAKQYHEQQlgiAEDLKDRAAEGRassnlgiIHQMKGDYDtALKL 378
Cdd:COG3071 112 RAGAprhpqvlrLLLQAYRQLGDweeLLELLPALRKHKALSAEE---AQALERRAYLGL-------LRQAARDAE-ALKA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 379 HKTHLCIAQELSDYAAQGRAygnmgNAYNALGMYDQAvkyhRQELQismevndRASQASTHGNLAVAYQALGAHD--RAL 456
Cdd:COG3071 181 LWKALPRAERRDPELAAAYA-----RALIALGDHDEA----ERLLR-------EALKRQWDPRLVRLYGRLQGGDpaKQL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 457 QHYQNHLniARELRDiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkvCHNLGYAHYCLGNYQEAV 536
Cdd:COG3071 245 KRAEKWL--KKHPND----PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEA-------YAELARLLEQLGDPEEAA 311
|
330
....*....|..
gi 1981090764 537 KYYEQDLALAKD 548
Cdd:COG3071 312 EHYRKALALALG 323
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
85-497 |
1.80e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.16 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 85 GQELLTAGHHGASVVVLEAALK----IGTCSLKL---RGSVFSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 157
Cdd:COG3899 752 AEALYLAGRFEEAEALLERALAaralAALAALRHgnpPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 158 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGhvyTAIGDYPNALASHKQCVLLAKQSKDELSEAR 237
Cdd:COG3899 832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAA---AAAAAAAALAAAAAAAARLLAAAAAALAAAA 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 238 ELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRnFDKAMSYHNYVLELAQELMEKAIEMR 317
Cdd:COG3899 909 AAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALA-AAAAAAAAAALAAAAAAAAAAAAAAA 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 318 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 397
Cdd:COG3899 988 AAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAA 1067
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAY---QALGAHDRALQHYQNHLNIARELRDIQS 474
Cdd:COG3899 1068 LLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALaaaLAALALAAAARAAAALLLLAAALALALA 1147
|
410 420
....*....|....*....|...
gi 1981090764 475 EARALSNLGNFHCSRGEYVQAAP 497
Cdd:COG3899 1148 ALLLLAALLLALALLLLALAALA 1170
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
398-433 |
2.80e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 40.22 E-value: 2.80e-04
10 20 30
....*....|....*....|....*....|....*.
gi 1981090764 398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 433
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
760-787 |
3.51e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.81 E-value: 3.51e-04
10 20
....*....|....*....|....*...
gi 1981090764 760 RAYGNLGDCYEALGDYEEAIKYYEQYLS 787
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
715-866 |
3.66e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.52 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 715 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgnesVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYlsvaqsLNR 794
Cdd:COG4785 72 LAQLYYERGVAYDSLGDYDLAIADFDQALEL---------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRA------LEL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 795 MQDQAKAYRGLGNGHRAMGSLQQALVCFEK----------RLVVAHELGEAFNKAQAYGEL----GSLHSQLGNYEQAIS 860
Cdd:COG4785 137 DPDYAYAYLNRGIALYYLGRYELAIADLEKaleldpndpeRALWLYLAERKLDPEKALALLledwATAYLLQGDTEEARE 216
|
....*.
gi 1981090764 861 CLERQL 866
Cdd:COG4785 217 LFKLAL 222
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
361-471 |
4.35e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.14 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 361 NLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVkyhrQELQISMEVNDRASQAstHG 440
Cdd:COG4785 78 ERGVAYDSLGDYDLAIAD------FDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----EDFDRALELDPDYAYA--YL 145
|
90 100 110
....*....|....*....|....*....|.
gi 1981090764 441 NLAVAYQALGAHDRALQHYQNHLNIARELRD 471
Cdd:COG4785 146 NRGIALYYLGRYELAIADLEKALELDPNDPE 176
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
773-864 |
4.72e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.90 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 773 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRAMGSLQQALVCFEKrlvVAHELGEAFNKAQAYGELGSLHSQL 852
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80
|
90
....*....|..
gi 1981090764 853 GNYEQAISCLER 864
Cdd:COG1729 81 GDYDKARATLEE 92
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
839-871 |
5.09e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.30 E-value: 5.09e-04
10 20 30
....*....|....*....|....*....|...
gi 1981090764 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 871
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
733-869 |
5.52e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 733 EEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAM 812
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1981090764 813 GSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 869
Cdd:COG5010 102 GDKDEAKEYYEK----ALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
517-548 |
5.54e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 5.54e-04
10 20 30
....*....|....*....|....*....|..
gi 1981090764 517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
898-1025 |
6.30e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 6.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 898 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQ 977
Cdd:COG5010 33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1981090764 978 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 1025
Cdd:COG5010 107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
191-470 |
7.84e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 44.22 E-value: 7.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 191 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLG 270
Cdd:pfam17874 35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 271 NKREEA--RAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 347
Cdd:pfam17874 115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ-WEPDAAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 348 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 421
Cdd:pfam17874 194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 422 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 470
Cdd:pfam17874 260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
890-1022 |
1.06e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 42.35 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 890 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 969
Cdd:PRK02603 46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1981090764 970 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1022
Cdd:PRK02603 108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
760-1088 |
1.11e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.52 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 760 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 825
Cdd:NF040586 435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 826 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 896
Cdd:NF040586 505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 897 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 959
Cdd:NF040586 580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 960 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1030
Cdd:NF040586 656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1981090764 1031 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1088
Cdd:NF040586 720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
839-872 |
1.14e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 1.14e-03
10 20 30
....*....|....*....|....*....|....
gi 1981090764 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 872
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
349-482 |
1.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 349 LKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQISme 428
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALD-- 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 429 vndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 482
Cdd:COG4235 82 ----PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
276-308 |
1.16e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 1.16e-03
10 20 30
....*....|....*....|....*....|...
gi 1981090764 276 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 308
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Nup153 |
pfam08604 |
Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and ... |
2082-2217 |
1.34e-03 |
|
Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and Nup154 from fission yeast. These have been demonstrated to be functionally equivalent.
Pssm-ID: 462533 [Multi-domain] Cd Length: 507 Bit Score: 43.72 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2082 PSSTavfRAS--ETSAFSRPVL--SHQKSQPSPVTVKPKPPARSSSLPKVSSGYSspTTSEmsIKDSPSQHSG---RPSP 2154
Cdd:pfam08604 1 PSTS---RSAlnFQDVLTRPSLhrSHLNFTVLDSPALFCQPSTSTAFPIGSSGFS--LVKE--IKDSTSQHDDdniSTTS 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 2155 GCDSQTSQLDQPLfklkypSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSS 2217
Cdd:pfam08604 74 GFSSRASDKDIPV------SKTVSLPLLWSPEAERSHSLSQHSASSSKKPAFNLSAFGTLSPS 130
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
387-508 |
1.53e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 387 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 458
Cdd:PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1981090764 459 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:PRK11447 374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
397-421 |
1.87e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 1.87e-03
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
401-506 |
2.02e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.18 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 401 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 475
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1981090764 476 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 506
Cdd:COG4700 160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
839-901 |
2.16e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 2.16e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1981090764 839 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 901
Cdd:COG1729 30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
476-508 |
2.19e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 2.19e-03
10 20 30
....*....|....*....|....*....|...
gi 1981090764 476 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
534-658 |
2.32e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.37 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 534 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAkfraLGNLGDIFICKKDIN 613
Cdd:COG4235 1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1981090764 614 GAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGY 658
Cdd:COG4235 69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
619-744 |
2.49e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 619 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKC 698
Cdd:COG5010 37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD------PNNPELYYNLALLYSRSGDKDEAKEY 110
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1981090764 699 YEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLA 744
Cdd:COG5010 111 YEKALAL-----SPD-NPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
581-787 |
2.52e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.82 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 581 YLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRR----------------LEASAYAALGT 644
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAaaalaaeridralalpDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 645 AYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGI 724
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALEL-----DPDY-AYAYLNRGI 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 725 TKMNMNVMEEAIGYFEQQLAMLQQ-------LSGNESVLDRGRAYGNL----GDCYEALGDYEEAIKYYEQYLS 787
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPNdperalwLYLAERKLDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
236-268 |
2.83e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 2.83e-03
10 20 30
....*....|....*....|....*....|...
gi 1981090764 236 ARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 268
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
397-425 |
2.86e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 2.86e-03
10 20
....*....|....*....|....*....
gi 1981090764 397 RAYGNMGNAYNALGMYDQAVKYHRQELQI 425
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
444-541 |
2.86e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 444 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 523
Cdd:COG1729 1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74
|
90
....*....|....*...
gi 1981090764 524 YAHYCLGNYQEAVKYYEQ 541
Cdd:COG1729 75 LSYLELGDYDKARATLEE 92
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
432-546 |
3.47e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.76 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 432 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 510
Cdd:CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1981090764 511 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 546
Cdd:CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
367-508 |
3.77e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.38 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 367 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 444
Cdd:CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1981090764 445 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 508
Cdd:CHL00033 115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
517-548 |
4.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 4.07e-03
10 20 30
....*....|....*....|....*....|..
gi 1981090764 517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
633-789 |
4.81e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.43 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 633 RLEASAYAALG---TAYRMIQKYDKALGYHTQELE-----VYQEL---------------SDLPGECRAHGHLAAVY--- 686
Cdd:COG3071 123 RLLLQAYRQLGdweELLELLPALRKHKALSAEEAQalerrAYLGLlrqaardaealkalwKALPRAERRDPELAAAYara 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 687 -MALGKYTMAFKCYEEQLDLGQklkDPSLeAQVYGNMGITKMnmnvmEEAIGYFEQ----------------QLAMLQQL 749
Cdd:COG3071 203 lIALGDHDEAERLLREALKRQW---DPRL-VRLYGRLQGGDP-----AKQLKRAEKwlkkhpndpdlllalgRLCLRNQL 273
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1981090764 750 SGN-----ESVL---DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 789
Cdd:COG3071 274 WGKareylEAALalrPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
438-471 |
4.85e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 36.75 E-value: 4.85e-03
10 20 30
....*....|....*....|....*....|....
gi 1981090764 438 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 471
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
520-550 |
5.39e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 36.71 E-value: 5.39e-03
10 20 30
....*....|....*....|....*....|.
gi 1981090764 520 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 550
Cdd:pfam13374 6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1980-2217 |
7.20e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 1980 SSKGSISTPNSPVKMTLIPSPNSPF-QKVGKLASSDTGESDQSSTETDSTVKSQE-ESNPKLDPQELAQKILEETQSHLI 2057
Cdd:PHA03307 181 ETARAPSSPPAEPPPSTPPAAASPRpPRRSSPISASASSPAPAPGRSAADDAGASsSDSSSSESSGCGWGPENECPLPRP 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2058 AVERLQRSGGQVSKSNNPEDGVQAPSSTAVFRAsetsafsrpvlshqksqPSPVTVKPKPPARSSSLPKVSSGYSSPTTS 2137
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRE-----------------RSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 2138 EMSIKDSPSQHSGRpspGCDSQTSQLDQPLFKLKYPSSPYSAhiSKSPRNMSPSSGHQSPAGSAPSPAL---SYSSAGSA 2214
Cdd:PHA03307 324 SSSSSTSSSSESSR---GAAVSPGPSPSRSPSPSRPPPPADP--SSPRKRPRPSRAPSSPAASAGRPTRrraRAAVAGRA 398
|
...
gi 1981090764 2215 RSS 2217
Cdd:PHA03307 399 RRR 401
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
198-232 |
7.63e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 35.98 E-value: 7.63e-03
10 20 30
....*....|....*....|....*....|....*
gi 1981090764 198 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDE 232
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
918-1081 |
8.64e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.02 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 918 QGRAYGNLGLTYESLGTFERAVVYQEQhlSIAAQMNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrRED 997
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEK--ALELDPDNPEA----FALLGEILLQLGDLDEAIVLLHEALEL------DPD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 998 EAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqlstdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERG 1077
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKA------------------LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
....
gi 1981090764 1078 RTRA 1081
Cdd:COG4783 133 LELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
165-267 |
8.64e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 165 AFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGA 244
Cdd:COG5010 63 LYNKLGDFEESLALLEQ----ALQLDPNNPE--LYYNLALLYSRSGDKDEAKEYYEKALALSPDN------PNAYSNLAA 130
|
90 100
....*....|....*....|...
gi 1981090764 245 VYIAMGDFENAVQCHEQHLKIAK 267
Cdd:COG5010 131 LLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
941-1076 |
9.23e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 9.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1981090764 941 YQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQH 1020
Cdd:COG5010 36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP------NNPELYYNLALLYSRSGDKDEAKE 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1981090764 1021 QLYRAsalfetirheaqlstdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAER 1076
Cdd:COG5010 110 YYEKA------------------LALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
236-268 |
9.49e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 9.49e-03
10 20 30
....*....|....*....|....*....|...
gi 1981090764 236 ARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 268
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| |
