|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
250-777 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 737.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 250 QVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGP-- 327
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 328 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 407
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 408 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 487
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 488 LQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEG 567
Cdd:pfam15070 241 LQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 568 DGLDREEEEDEeeeeeeavaVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKE 647
Cdd:pfam15070 321 DGLESEEEEEE---------APRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 648 PEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLK 727
Cdd:pfam15070 392 PEHEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1955630634 728 ERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQ 777
Cdd:pfam15070 472 QRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
822-867 |
3.60e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 101.31 E-value: 3.60e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1955630634 822 SPRDNPTAQQIMQLLREMQNPRERPGLGSNPCIPFFYRADENDEVK 867
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
134-767 |
2.38e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 2.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 134 VGELERALSAVSTQQKKADRYnKELTKERDALRLELYKNTQsnEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEM 213
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 214 TELLLQQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEnlkgESAMWRQRMQQMSEQVHTLREE 293
Cdd:COG1196 272 LRLELEELELELEE--AQAEEYELLAELARLEQDIARLEERRRELEERLEELEE----ELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 294 KECSMSRVQELETSLAELRnqmaeppppeppagpSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNreqeerl 373
Cdd:COG1196 346 LEEAEEELEEAEAELAEAE---------------EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE------- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 374 leleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 453
Cdd:COG1196 404 -----------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 454 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 533
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 534 RQELQETQERLEAATQQNQQLRAQLSlmahpgegdgLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAmvafFNSAV 613
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLP----------LDKIRARAALAAALARGAIGAAVDLVASDLREADA----RYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 614 ASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETH------RALQGAMEKLQSRFMELMQE 687
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAalleaeAELEELAERLAEEELELEEA 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 688 KADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNE 767
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
69-783 |
5.70e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 5.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 69 DEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQ 148
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 149 KKADRYNKELTKERDALRlelykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfsSRCEAP 228
Cdd:TIGR02168 312 ANLERQLEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 229 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKG-ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETS 307
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 308 LAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAEL 382
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQarldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 383 WG--------EQAEARRQILETM-QND--RTTI----SRALSQNRELKEQLAELQSGFVKLTNE---------------- 431
Cdd:TIGR02168 543 LGgrlqavvvENLNAAKKAIAFLkQNElgRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDlvkfdpklrkalsyll 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 432 -NMEITSALQSEQHVKRELGKK--LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQ 508
Cdd:TIGR02168 623 gGVLVVDDLDNALELAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 509 LLlqtQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAV 588
Cdd:TIGR02168 703 LR---KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 589 pqpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAaapapgtggdsvCGETHR 668
Cdd:TIGR02168 780 ------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA------------TERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 669 ALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMK 748
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
730 740 750
....*....|....*....|....*....|....*
gi 1955630634 749 VKLLELQELVLRLVGDRNEWHGRFLAAAQNPADEP 783
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
134-461 |
8.87e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 8.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 134 VGELERALSAVSTQQKKADRYnKELTKERDALRLELYknTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEM 213
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 214 TELLLQQ------------FSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesAMWRQRMQ 281
Cdd:TIGR02168 272 LRLEVSEleeeieelqkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 282 QMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEG 361
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ--IASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 362 LSRLNREQEERLLELERAAELWG-----EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEIT 436
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEEleelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
330 340
....*....|....*....|....*
gi 1955630634 437 SALQSEQHVKRELGKKLGELQEKLS 461
Cdd:TIGR02168 506 EGVKALLKNQSGLSGILGVLSELIS 530
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
80-629 |
2.71e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 2.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 80 ALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELT 159
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 160 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEApdANQQLQQAME 239
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE--LAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 240 ERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPP 319
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 320 PPEPPAGPSEVEQQLQAEAEHLRKELEgLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEA--RRQILETM 397
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLL-LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAalEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 398 QNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSL 477
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 478 QQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQ 557
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630634 558 LSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNsaVASAEEEQARLRGQLKE 629
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD--LEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
68-546 |
1.13e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 68 EDEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ 147
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 148 QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEA 227
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA--ELEEEEEALLELL 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 228 PDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVhtlreekecsmsrVQELETS 307
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA-------------VAVLIGV 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 308 LAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQA 387
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 388 EARRQILETMQ-------NDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKL 460
Cdd:COG1196 613 ARYYVLGDTLLgrtlvaaRLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 461 SELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQET 540
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*.
gi 1955630634 541 QERLEA 546
Cdd:COG1196 773 EREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-550 |
2.78e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 203 NLEELQKKLEMTELLLQqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQ 282
Cdd:TIGR02168 678 EIEELEEKIEELEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 283 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPppeppagpsEVEQQLQAEAEHLRKELEGLAGQLQAqvqdnegL 362
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---------AQIEQLKEELKALREALDELRAELTL-------L 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 363 SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNE-------NMEI 435
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNErasleeaLALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 436 TSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHL-QQYVAAYQQLTSEKEVLHNQLLLQTQ 514
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350
....*....|....*....|....*....|....*.
gi 1955630634 515 LVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 550
Cdd:TIGR02168 973 RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
134-566 |
1.47e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.79 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 134 VGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEM 213
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 214 TELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE 293
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 294 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERL 373
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 374 LELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQHVKRELgKKL 453
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG---LPPDLSPEELLELLDRIEELQELL-REA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 454 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYvAAYQQLTSEKEVLHNQLLLQTQLVDQL--QQQEAQGKAVAE 531
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELleALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*
gi 1955630634 532 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGE 566
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
68-558 |
2.18e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 68 EDEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ 147
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 148 QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcea 227
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE------- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 228 pdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETS 307
Cdd:COG1196 405 --LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE-EAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 308 LAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELwgEQA 387
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD--EVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 388 EARRQILETMQNDRTTI-------SRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKL 460
Cdd:COG1196 560 AAAIEYLKAAKAGRATFlpldkirARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 461 SELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQET 540
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490
....*....|....*...
gi 1955630634 541 QERLEAATQQNQQLRAQL 558
Cdd:COG1196 720 ELEEEALEEQLEAEREEL 737
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
171-550 |
1.62e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 171 KNTQSNEDLKQEKSELEEKLRvlvtekaGMQLNLEELQKKL------EMTELLLQQFSSRCEapDANQQLQQAMEERAQL 244
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLR-------QAQAELEALKDDNdeetreTLSTLSLRQLESRLA--QTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 245 EAHLgqvmeSVRQLQMERdkyAENLKGESAmwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEp 323
Cdd:PRK11281 148 NSQL-----VSLQTQPER---AQAALYANS---QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 324 pagpsEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtT 403
Cdd:PRK11281 216 -----EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--L 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 404 ISRALSQNRELKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELK 470
Cdd:PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLA 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 471 SQEAQ------SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLL--------LQTQLVDQLQQQEAQGKAVaEMAR 534
Cdd:PRK11281 360 DRIADlrleqfEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALLqllderreLLDQLNKQLNNQLNLAINL-QLNQ 437
|
410
....*....|....*.
gi 1955630634 535 QELQETQERLEAATQQ 550
Cdd:PRK11281 438 QQLLSVSDSLQSTLTQ 453
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
99-560 |
1.75e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.84 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 99 KAELQTALahtQHAARQKEGESEDLASrlqysrrrVGELERALSAVstqqKKADRYNKELtkerDALRLELyknTQSNED 178
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 179 LKQEKSELE--EKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQL--QQAMEERAQLEahlgqvmes 254
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQAA--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 255 vrqlqmerdkYAENLkgesamwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEppagpsEVEQQ 333
Cdd:PRK11281 165 ----------LYANS--------QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 334 LQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtTISRALSQNRE 413
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 414 LKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELKSQEAQ----- 475
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 476 -SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLLlqtQLVDqlqqqeaqgkavaemARQELQEtqerleaatQQNQ 552
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALL---QLLD---------------ERRELLD---------QLNK 421
|
....*...
gi 1955630634 553 QLRAQLSL 560
Cdd:PRK11281 422 QLNNQLNL 429
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
301-700 |
1.81e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 301 VQELETSLAELRNQMAEPPPPeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAA 380
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEK---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 381 ELWGEQAEARRQILETMQNDRTTISRALSQNR----ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGEL 456
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 457 QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQgkavaemARQE 536
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL-------LRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 537 LQETQERLEAATQQNQQLRAQLSLMahpgegdgldreeeedeeeeeeeavavpqpmpsipedlesreamvaffNSAVASA 616
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEEL------------------------------------------------REKLAQL 927
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 617 EEEQARLRGQLKEQRVRCRRLAHLLAsaqkEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVE 696
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003
|
....
gi 1955630634 697 ELEH 700
Cdd:TIGR02168 1004 FLTA 1007
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
68-314 |
2.18e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 68 EDEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ 147
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 148 qkkadryNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEA 227
Cdd:TIGR02168 840 -------LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE--ELSEELRELESKR 910
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 228 PDANQQLQQAMEERAQLEAHLGqvmesvrQLQMERDKYAENLKGESAMwrqrMQQMSEQVHTLREEKEcsmsrvQELETS 307
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLE-------GLEVRIDNLQERLSEEYSL----TLEEAEALENKIEDDE------EEARRR 973
|
....*..
gi 1955630634 308 LAELRNQ 314
Cdd:TIGR02168 974 LKRLENK 980
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
68-556 |
3.24e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 68 EDEKKECHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAV--- 144
Cdd:PRK02224 226 EEQREQARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLlae 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 145 ----STQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQ 220
Cdd:PRK02224 302 agldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 221 FSSRCEAPDAnqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMwRQRMQQMSEQVHTLREEKEC---- 296
Cdd:PRK02224 382 RREEIEELEE--EIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT-LRTARERVEEAEALLEAGKCpecg 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 297 --------------SMSRVQELETSLAELRNQMAEPPPP-EPPAGPSEVEQQLQAEAEHlRKELEGLAGQLQAQV-QDNE 360
Cdd:PRK02224 459 qpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERlERAEDLVEAEDRIERLEER-REDLEELIAERRETIeEKRE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 361 GLSRLNreqeERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITS--- 437
Cdd:PRK02224 538 RAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERlre 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 438 ALQSEQHVKRELGKKLGELQEKLSELKETV-ELKSQEAQSLQQQRDQYLGHLQQYVaayQQLTSEKEVLHNQLLLQTQLV 516
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKL---DELREERDDLQAEIGAVENEL 690
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1955630634 517 DQLQQQEAQgkavaemaRQELQETQERLEAATQQNQQLRA 556
Cdd:PRK02224 691 EELEELRER--------REALENRVEALEALYDEAEELES 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
149-557 |
3.72e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 149 KKADRYNKELTKERDalrlELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAP 228
Cdd:TIGR04523 138 KNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 229 DA---------------NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREE 293
Cdd:TIGR04523 214 KSlesqiselkkqnnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL--------SEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 294 KEcsmSRVQELETSLAELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLqaqVQDNEGLSRLNreqeerl 373
Cdd:TIGR04523 286 LE---KQLNQLKSEISDLNNQ-----------KEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLN------- 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 374 leleraaelwgeqaearrqilETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 453
Cdd:TIGR04523 342 ---------------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 454 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 533
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420
....*....|....*....|....
gi 1955630634 534 RQELQETQERLEAATQQNQQLRAQ 557
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEE 504
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
131-314 |
4.17e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 131 RRRVGELERALSAVSTQQKKADRYNkelTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 210
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLA---ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 211 LEMTELLLQQFSSRCEApDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTL 290
Cdd:COG4913 325 LDELEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|....
gi 1955630634 291 REEKECSMSRVQELETSLAELRNQ 314
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAE 427
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
68-352 |
4.29e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 68 EDEKKECHQKQgALREQLQVHIQTIGilVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ 147
Cdd:TIGR02169 261 SELEKRLEEIE-QLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 148 QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtelllqqfSSRCEA 227
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN---------ELKREL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 228 PDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLREEKECSMSRVQELETS 307
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1955630634 308 LAELRNQMAEPPPPEPPAGPSEVEQqlQAEAEHLRKELEGLAGQL 352
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGG--RAVEEVLKASIQGVHGTV 527
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
115-475 |
4.80e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 115 QKEGESEDLASRLQYSRRRVGELERALSAVSTQQkkadrynKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLV 194
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKEL-------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 195 TEKAGMQLNLEELQKKLEMTElllqqfssrceapdanQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESA 274
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELE----------------ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 275 mwrqRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmaeppppeppagpSEVEQQLQAEAEHLRKELEGLAGQLQA 354
Cdd:TIGR02168 811 ----ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ-------------IEELSEDIESLAAEIEELEELIEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 355 QVQDNEGLSRlnreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSgfvKLTNENME 434
Cdd:TIGR02168 874 ELEALLNERA--------------------SLEEALALLRSELEELSEELRELESKRSELRRELEELRE---KLAQLELR 930
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1955630634 435 ITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQ 475
Cdd:TIGR02168 931 LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
328-558 |
2.67e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 328 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSrlnreqeerlleleraaelwgeQAEARRQILETMQNDRTTISRA 407
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 408 LSQNRELKEQLAELQSgfvKLTNENMEITSALQSEqhVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 487
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630634 488 LQQYVA-AYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQL 558
Cdd:COG3206 307 LQQEAQrILASLEAELEALQARE---ASLQAQLAQLEARLAELPE-LEAELRRLEREVEVARELYESLLQRL 374
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
291-729 |
2.85e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 291 REEKECSMSRVQELETSLAELRNQMaeppppeppagpseveQQLQAEAEHLRKELEglagqLQAQVQDNEGLSRLNreqe 370
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQL----------------ERLRREREKAERYQA-----LLKEKREYEGYELLK---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 371 erlleleraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLA-ELQSGFVKLTNENMEITSALQSEQhvkREL 449
Cdd:TIGR02169 231 --------------EKEALERQK-EAIERQLASLEEELEKLTEEISELEkRLEEIEQLLEELNKKIKDLGEEEQ---LRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 450 GKKLGELQEKLSELKETVELKSQEAQSLQQQRdqylghlQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAV 529
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 530 AEMARQELQETQERLEAATQQNQQLRAQLSLMAHpgEGDGLDREEEEDEeeeeeeavavpqpmpsipEDLESREAMVAFF 609
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKR--EINELKRELDRLQ------------------EELQRLSEELADL 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 610 NSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEpeaaapapgtggdsvcgethralqgaMEKLQSRFMELMQEKA 689
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--------------------------LSKYEQELYDLKEEYD 479
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630634 690 DLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 729
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
284-707 |
3.15e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 284 SEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQLQAQvQDNEGLS 363
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAE-----SDLEQDYQAASDHLNLVQTALRQQEKIE-RYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 364 RLNREQEerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSALQSEQ 443
Cdd:PRK04863 359 ELEERLE--------------EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL------DVQQTRAIQYQQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 444 HVKR-ELGKKLGEL----QEKLSELKETVELKSQEAQ----SLQQQRDQYLGHLQQYVAAYQqltsekevlhnqllLQTQ 514
Cdd:PRK04863 419 AVQAlERAKQLCGLpdltADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSQFEQAYQ--------------LVRK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 515 LVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSLMAHpgegdglDREEEEDEEEEEEEAVAVPQPMPS 594
Cdd:PRK04863 485 IAGEVSRSEAWDVA------RELLRRLREQRHLAEQLQQLRMRLSELEQ-------RLRQQQRAERLLAEFCKRLGKNLD 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 595 IPEDLES----REAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETHRAL 670
Cdd:PRK04863 552 DEDELEQlqeeLEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEF--EDSQDV 629
|
410 420 430
....*....|....*....|....*....|....*..
gi 1955630634 671 QGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSG 707
Cdd:PRK04863 630 TEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
128-353 |
1.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 128 QYSRRRVGELERALSAVSTQqkkADRYNKELTKERDALR--LELYKNTQSNEDLK---QEKSELEEKLRVLVTEKAGMQL 202
Cdd:COG3206 164 QNLELRREEARKALEFLEEQ---LPELRKELEEAEAALEefRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 203 NLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesamwrqrmQQ 282
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ----------QE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630634 283 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPeppagpsEVE-QQLQAEAEHLRKELEGLAGQLQ 353
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL-------EAElRRLEREVEVARELYESLLQRLE 375
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
466-553 |
1.56e-04 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 44.11 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 466 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVlhNQLL--------------LQTQLVDQLQQQEAQGKAVAE 531
Cdd:NF038305 102 TRRLSTQALQQINQQAGQQETQLQQQLNQLQAQTSPQQL--NQLLkseqkqgqalasgqLPEEQKEQLQQFKSNPQALDK 179
|
90 100
....*....|....*....|..
gi 1955630634 532 MARQELQETQERLEAATQQNQQ 553
Cdd:NF038305 180 FLAQQLTQIRTQAEEAEKQARL 201
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
177-364 |
1.83e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 177 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQvmesVR 256
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD----LA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 257 QLQMERDKyaenlkgesamWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQA 336
Cdd:COG4913 689 ALEEQLEE-----------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190
....*....|....*....|....*....|
gi 1955630634 337 EA--EHLRKELEGLAGQLQAQVQDNEGLSR 364
Cdd:COG4913 758 ALgdAVERELRENLEERIDALRARLNRAEE 787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
184-538 |
2.11e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 184 SELEEKLRVLVTEKAgMQLNLEELQKKL---EMTELLLqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQM 260
Cdd:TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKreyEGYELLK--------------EKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 261 ERDKYAEnlkgESAMWRQRMQQMSEQVHTLREEKECSM-SRVQELETSLAELRNQMAEPPPPEPPAGpsEVEQQLQAEAE 339
Cdd:TIGR02169 259 EISELEK----RLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAE--ERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 340 HLRKELEGLAGQLQAQVQDNEGL-SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQL 418
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLtEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 419 AELQSGFVKLTNENMEITSALQseqhvkrelgkKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQL 498
Cdd:TIGR02169 413 EELQRLSEELADLNAAIAGIEA-----------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1955630634 499 TSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQ 538
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
446-701 |
2.82e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 446 KRELGKKLGELQEKLSELKETvelkSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnQLLLQTQLVDQLQQQEAQ 525
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA----HEALEDAREQIEL-LEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 526 GKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREeeedeeeeeeeavavpqpmpsipEDLESReam 605
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-----------------------EQLERE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 606 vaffnsaVASAEEEQARLRGQLKEQRVRCRRL-------AHLLASAQKEPEAAAPApgtggdsvCGETHRALQGAMEKLQ 678
Cdd:COG4913 347 -------IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEA--------LEEELEALEEALAEAE 411
|
250 260
....*....|....*....|...
gi 1955630634 679 SRFMELMQEKADLKERVEELEHR 701
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
122-760 |
3.03e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 122 DLASRLQYSRRRVGELERALSAVstqqkKADRYNK-ELTKERDALRLElykntQSNEDLKQEKSELEEKLRVLVTEKAGM 200
Cdd:pfam15921 228 ELDTEISYLKGRIFPVEDQLEAL-----KSESQNKiELLLQQHQDRIE-----QLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 201 QLNLEELQKKLE-MTELLLQQFSS--------RCEAPDANQQLQQAMEEraqLEAHLGQVMESVRQLQMERDKYAEnlkg 271
Cdd:pfam15921 298 QSQLEIIQEQARnQNSMYMRQLSDlestvsqlRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQ---- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 272 ESAMWRQRMQQMSEQVHtlREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQ 351
Cdd:pfam15921 371 ESGNLDDQLQKLLADLH--KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 352 LQAQVQ-DNEGLSRLNREQEERLLELeraaelwgeqaEARRQILETMQNDRTTISralSQNRELKEQLAELQSGFVKLTN 430
Cdd:pfam15921 449 QMAAIQgKNESLEKVSSLTAQLESTK-----------EMLRKVVEELTAKKMTLE---SSERTVSDLTASLQEKERAIEA 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 431 ENMEITsalqseqhvkrelgkklgelqeklsELKETVELKSQEAQSLQQQRDqYLGHLQQYVAAYQQLTSEK----EVLH 506
Cdd:pfam15921 515 TNAEIT-------------------------KLRSRVDLKLQELQHLKNEGD-HLRNVQTECEALKLQMAEKdkviEILR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 507 NQLLLQTQLVDQ-------LQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgLDREEEEDEE 579
Cdd:pfam15921 569 QQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE-------LEKVKLVNAG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 580 EEEEEAVA-VPQPMPSIPEDLESREAMVaffNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAA----APA 654
Cdd:pfam15921 642 SERLRAVKdIKQERDQLLNEVKTSRNEL---NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTrntlKSM 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 655 PGTGGDSV-----CGETHRALQGAMEKLQSRFMELMQ-------EKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQ 722
Cdd:pfam15921 719 EGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEamtnankEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
650 660 670
....*....|....*....|....*....|....*...
gi 1955630634 723 RAVLKERHREKEeyisrLAQDKEEMkvKLLELQELVLR 760
Cdd:pfam15921 799 ERRLKEKVANME-----VALDKASL--QFAECQDIIQR 829
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
76-546 |
3.38e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 76 QKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAAR--------QKEGESEDLASRLQYSRRRVGELERALSAVSTQ 147
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARsqansiqsQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 148 QKKADRYNK----ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTE--KAGMQLNLEELQKKlemtELLLQQF 221
Cdd:pfam15921 333 LREAKRMYEdkieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADlhKREKELSLEKEQNK----RLWDRDT 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 222 SSRCEAPDANQQLQQAMEERAQLEAHLgQVMESVRQLQMERDKYAENLKGESamwrqrMQQMSEQVHTLREEKECSMSRV 301
Cdd:pfam15921 409 GNSITIDHLRRELDDRNMEVQRLEALL-KAMKSECQGQMERQMAAIQGKNES------LEKVSSLTAQLESTKEMLRKVV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 302 QELETSLAELRNQMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAA 380
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAiEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKD 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 381 ELwgeqAEARRQILETMQNDRTTISRALSQNRELKEQLAElqsgfvKLTNENMEitsaLQSEQHVKRELGKKLGELQEKL 460
Cdd:pfam15921 562 KV----IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEK------EINDRRLE----LQEFKILKDKKDAKIRELEARV 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 461 SELK-ETVEL------KSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQlvdQLQQQEAQGKAVAEMA 533
Cdd:pfam15921 628 SDLElEKVKLvnagseRLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE---EMETTTNKLKMQLKSA 704
|
490
....*....|...
gi 1955630634 534 RQELQETQERLEA 546
Cdd:pfam15921 705 QSELEQTRNTLKS 717
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
277-711 |
4.63e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 277 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQ--LQA 354
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE-----SDLEQDYQAASDHLNLVQTALRQQekIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 355 QVQDNEGLS-RLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 433
Cdd:COG3096 352 YQEDLEELTeRLE------------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 434 EITSALQSEQHVKR-ELGKKLGEL--------QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSekev 504
Cdd:COG3096 408 QQTRAIQYQQAVQAlEKARALCGLpdltpenaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK---- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 505 lhnqlllqtqLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSlmahpgEGDGLDREEEEDEEEEEEE 584
Cdd:COG3096 484 ----------IAGEVERSQAWQTA------RELLRRYRSQQALAQRLQQLRAQLA------ELEQRLRQQQNAERLLEEF 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 585 AVAVPQPMPS---IPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAhllasaQKEPE-AAAPAPGTGGD 660
Cdd:COG3096 542 CQRIGQQLDAaeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA------ARAPAwLAAQDALERLR 615
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630634 661 SVCGET---HRALQGAMEKLQSRFMELMQEKADLKERVEELE---HRCIQLSGETDT 711
Cdd:COG3096 616 EQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
92-261 |
5.80e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 92 IGILVSEKAELQTALAHTQHAARQKEGESEDLASRL---------QYSRRRVGELERALSAVSTQQKKADRYN---KELT 159
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERRealqrlaeySWDEIDVASAEREIAELEAELERLDASSddlAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 160 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK--KLEMTELLLQQFSSRCEAPDANQQLQQA 237
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlaRLELRALLEERFAAALGDAVERELRENL 771
|
170 180
....*....|....*....|....
gi 1955630634 238 MEERAQLEAHLGQVMESVRQLQME 261
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
112-293 |
7.42e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 112 AARQKEGESEDLASRLQY--SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLK-QEKSELEE 188
Cdd:COG4913 266 AARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 189 KLRVLVTEKAGMQLNLEELQKKLEMTELLL----QQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDK 264
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAE--AAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
170 180
....*....|....*....|....*....
gi 1955630634 265 yaenLKGESAMWRQRMQQMSEQVHTLREE 293
Cdd:COG4913 424 ----LEAEIASLERRKSNIPARLLALRDA 448
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
68-545 |
7.89e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 7.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 68 EDEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVstq 147
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 148 qkkadrynkELTKERDALRLELYKNTQSNEDLKQEKSELEEklrvLVTEKAGMQLNLEELQKKLEmTELLLQQFSSRCEA 227
Cdd:COG4717 129 ---------PLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELE-ELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 228 PDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAmwRQRMQQMSEQ------VHTLREEKECSMSRV 301
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaaLLALLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 302 QELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLA-GQLQAQVQDNEGLSRLNREQEERLLELERAA 380
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 381 ELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQS---------EQHVKRELGK 451
Cdd:COG4717 353 LREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 452 KLGELQEKLSELKETVELKSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnqlllqtqlvdqlqQQEAQGKAVAE 531
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAEL---------------RELAEEWAALK 496
|
490
....*....|....
gi 1955630634 532 MARQELQETQERLE 545
Cdd:COG4717 497 LALELLEEAREEYR 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
385-558 |
8.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 8.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 385 EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLtnenmeitsALQSEQHVKRELGKKLGELQEKLSELK 464
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 465 ETVELKSQEAQSLQQQRDQY-LGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 543
Cdd:COG4913 316 ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170
....*....|....*
gi 1955630634 544 LEAATQQNQQLRAQL 558
Cdd:COG4913 396 LEEELEALEEALAEA 410
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
219-565 |
8.09e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 219 QQFSSRCEAPDANQQLQQAMEERAQLEA--------------HLGQVMESVRQlQMERDKYAENLkgESAMWRQRMQQM- 283
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEELSAresdleqdyqaasdHLNLVQTALRQ-QEKIERYQEDL--EELTERLEEQEEv 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 284 ----SEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPpagpsEVEQQLQAEAEhlRKELEGLAGQLQAQVQDN 359
Cdd:COG3096 370 veeaAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAI-----QYQQAVQALEK--ARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 360 egLSRLNREQEERLLELERAAELWGEQAEARRQILETMQ-----NDRTTISRALSQNRELKEQLAELQS---GFVKLTNE 431
Cdd:COG3096 443 --LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYElvckiAGEVERSQAWQTARELLRRYRSQQAlaqRLQQLRAQ 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 432 NMEITSALQSEQHVKR---ELGKKLG-------ELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSE 501
Cdd:COG3096 521 LAELEQRLRQQQNAERlleEFCQRIGqqldaaeELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630634 502 KEVLHNQLLLQTQLVDQLQQQEAQGKAV----AEMARQELQETQERLEAAtQQNQQLRAQLSLMAHPG 565
Cdd:COG3096 601 APAWLAAQDALERLREQSGEALADSQEVtaamQQLLEREREATVERDELA-ARKQALESQIERLSQPG 667
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
383-771 |
8.38e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 383 WGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvKRELGKKLGELQEKLSE 462
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE-----KLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 463 LKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLhNQLLLQTQLVDQLQQQEAQGKAvaEMARQELQETQE 542
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAEEL--EELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 543 RLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEA--VAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQ 620
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 621 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGEThRALQGAMEKLQSRFMELMQEKADLKERVEELEH 700
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 701 RCIQLSGETDTIGEYIALYQ--SQRAVLKERHREKEEYISRLA---------QDKEEMKVKLLELQELVLRLVGDRNEWH 769
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQLEELLgeleelleaLDEEELEEELEELEEELEELEEELEELR 452
|
..
gi 1955630634 770 GR 771
Cdd:COG4717 453 EE 454
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
512-761 |
8.79e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 512 QTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgldreeeedeeeeeeeavavpqp 591
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 592 mpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRvrcRRLAHLLASAQKEPEAAAPAPGTGGDSVcgethRALQ 671
Cdd:COG4942 69 -----RRIRALEQELAALEAELAELEKEIAELRAELEAQK---EELAELLRALYRLGRQPPLALLLSPEDF-----LDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 672 GAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKL 751
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250
....*....|
gi 1955630634 752 LELQELVLRL 761
Cdd:COG4942 216 AELQQEAEEL 225
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
113-394 |
9.15e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 9.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 113 ARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKNTQSNEDLKQEKSELEEKL 190
Cdd:pfam05557 306 ARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRaiLESYDKELTMSNYSPQLLERIEEA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 191 RVLVTEkagMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQL---QQAMEERAQLEAHLGQVMESVRQLQMERDKYAE 267
Cdd:pfam05557 386 EDMTQK---MQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQAlrqQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 268 nlkgesamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAelrnqmaeppppeppagpSEVEQQLQAEAEHLRKELEG 347
Cdd:pfam05557 463 ---------QKNELEMELERRCLQGDYDPKKTKVLHLSMNPA------------------AEAYQQRKNQLEKLQAEIER 515
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1955630634 348 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQIL 394
Cdd:pfam05557 516 LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
156-472 |
1.04e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 156 KELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqQLQ 235
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEKLEKEVKELEELKE------EIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 236 QAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRN 313
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 314 QMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE-ARR 391
Cdd:PRK03918 322 EINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEkAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 392 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITsalqsEQHVKRELGKKLGELQEKLSELKETVELKS 471
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-----EEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
.
gi 1955630634 472 Q 472
Cdd:PRK03918 477 K 477
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
136-210 |
1.06e-03 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.02 E-value: 1.06e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630634 136 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 210
Cdd:COG4026 132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
383-558 |
1.08e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 383 WGEQAEARRQILETMQNDRTTISRALSQN------RELKEQLAELQSGFVKLTNENMEItsalqseqhvkRELGKKLGEL 456
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL-----------AALEEQLEEL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 457 QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlqtqlvDQLQQQEAQGKAVAEMARQe 536
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL------EERFAAALGDAVERELREN- 770
|
170 180
....*....|....*....|..
gi 1955630634 537 lqeTQERLEAATQQNQQLRAQL 558
Cdd:COG4913 771 ---LEERIDALRARLNRAEEEL 789
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
136-355 |
1.13e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 136 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 215
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 216 LLLQQFssrceapdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERdKYAENLKGESAMWRQRMQQMSEQVHTLREEKE 295
Cdd:COG4942 104 EELAEL--------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630634 296 CSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQ 355
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelaeLQQEAEELEALIARLEAEAAAA 239
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-559 |
1.16e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 413 ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKR--ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH--L 488
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvI 265
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630634 489 QQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA-VAEMARQELQETQERLEAATQQNQQLRAQLS 559
Cdd:COG3206 266 QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLA 337
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
427-568 |
2.31e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 41.67 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 427 KLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLghLQQYVAAYQQL-TSEKEVl 505
Cdd:COG1193 508 LLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEIL--EKAREEAEEILrEARKEA- 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630634 506 hnqlllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGD 568
Cdd:COG1193 585 -------EELIRELREAQAEEEELKE-ARKKLEELKQELEEKLEKPKKKAKPAKPPEELKVGD 639
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
230-555 |
2.77e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 230 ANQQLQQAMEERAQLEAHLGQVmESVRQLQMERDKYAENLKGESAMWRQRMQQMS----EQVHTLREEKECSMSRVQELE 305
Cdd:TIGR00618 154 FAQFLKAKSKEKKELLMNLFPL-DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 306 TSLAELRnqmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRlnREQEERLLELERAAELWGE 385
Cdd:TIGR00618 233 EALQQTQ---QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR--ARKAAPLAAHIKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 386 QAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQ--EKLSEL 463
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhiHTLQQQ 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 464 KETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 543
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
330
....*....|..
gi 1955630634 544 LEAATQQNQQLR 555
Cdd:TIGR00618 468 LKEREQQLQTKE 479
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
176-366 |
2.80e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 176 NEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKlemtellLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESV 255
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 256 RQLQMERDKYAENLKGESAMWRQ-----RMQQMSEQVHTLREEKECSMSR-------VQELETSLAELRNQMAEPPPPEP 323
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1955630634 324 PAGPSEVeQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 366
Cdd:COG3206 316 ASLEAEL-EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
277-490 |
3.79e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 277 RQRMQQMSEQVHTLREEKEcSMSRVQELETSLAELRNQMAEPPPPEPPAGPseveQQLQAEAEHLRKELEGLAGQL-QAQ 355
Cdd:COG4913 241 HEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRL----ELLEAELEELRAELARLEAELeRLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 356 VQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALsqnRELKEQLAELQSGFVKLTNENMEI 435
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1955630634 436 TSALQSEQHvkrELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 490
Cdd:COG4913 393 LEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
103-746 |
3.85e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 103 QTALAHTQHAARQKEGESEDLASRL---QYSRRRVGELERALSAVSTQQKKADRYNKELT-------------------- 159
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLkeiEHNLSKIMKLDNEIKALKSRKKQMEKDNSELElkmekvfqgtdeqlndlyhn 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 160 ---------KERDALRLELYKNTQSNEDLKQEKSELEeklrvlvTEKAGMQLNLEELQKKLEMTELLLQQFSSRCE---- 226
Cdd:TIGR00606 310 hqrtvrekeRELVDCQRELEKLNKERRLLNQEKTELL-------VEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgf 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 227 --APDANQQLQQA-------MEERAQLEAHL-GQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR----- 291
Cdd:TIGR00606 383 erGPFSERQIKNFhtlvierQEDEAKTAAQLcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvike 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 292 -EEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQE 370
Cdd:TIGR00606 463 lQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 371 ERLLELERAAELWGEQAEARRQILETMQNdRTTISRALSQNRELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELG 450
Cdd:TIGR00606 543 DKMDKDEQIRKIKSRHSDELTSLLGYFPN-KKQLEDWLHSKSKEINQTRD------RLAKLNKELASLEQNKNHINNELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 451 KK---LGELQEKLSELKETVELKS------QEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQ 521
Cdd:TIGR00606 616 SKeeqLSSYEDKLFDVCGSQDEESdlerlkEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 522 QEAQGKAVAEMARQELQETQERLeaatqQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAvAVPQPMPSIPEDLES 601
Cdd:TIGR00606 696 FISDLQSKLRLAPDKLKSTESEL-----KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEE 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 602 REAMVAFFNSAVASAEEEQA------RLRGQLKEQRvrcRRLAHLLASAQkepeaaapapGTGGDSVCGETHRALQGAME 675
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTdvtimeRFQMELKDVE---RKIAQQAAKLQ----------GSDLDRTVQQVNQEKQEKQH 836
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630634 676 KLQ---SRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEE 746
Cdd:TIGR00606 837 ELDtvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
97-543 |
4.31e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 97 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYnKELTKERDALRLELYKNTQSN 176
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY-IKLSEFYEEYLDELREIEKRL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 177 EDLKQEKSELEEKLRVLVTEKAgmqlNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEA-----HLGQV 251
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEE----RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgltpeKLEKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 252 MESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEK-ECSMSRVQELETSLAELRNQMAEPPP--PEPPAGPS 328
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAELKriEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 329 EVEQQLQAEAEHLRKELEGlagqlqaqvqdNEGLSRLNREQeerlleleraaelwgEQAEARRQILETMqnDRTTISRAL 408
Cdd:PRK03918 473 EKERKLRKELRELEKVLKK-----------ESELIKLKELA---------------EQLKELEEKLKKY--NLEELEKKA 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 409 SQNRELKEQLAELqSGFVKLTNENMEITSALQSEqhvKRELGKKLGELQEKLSELKEtvELKSQEAQSLQQQrDQYLGHL 488
Cdd:PRK03918 525 EEYEKLKEKLIKL-KGEIKSLKKELEKLEELKKK---LAELEKKLDELEEELAELLK--ELEELGFESVEEL-EERLKEL 597
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630634 489 QQYVAAYQQLT---SEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 543
Cdd:PRK03918 598 EPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
158-555 |
4.39e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 158 LTKERDALRLELYKNTQSNEDLKQEKSELEEKLRvLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQA 237
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 238 MEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQR--MQQMSEQVHTLREEKECSMSRVQELETSLAELRNqm 315
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRrlLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQH-- 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 316 aEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILE 395
Cdd:TIGR00618 381 -IHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 396 TMQndrttisRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQeaq 475
Cdd:TIGR00618 460 HLQ-------ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR--- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 476 sLQQQRDQYLGHLQQYVAAYQQLTSEKE---VLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQ 552
Cdd:TIGR00618 530 -MQRGEQTYAQLETSEEDVYHQLTSERKqraSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAED 608
|
...
gi 1955630634 553 QLR 555
Cdd:TIGR00618 609 MLA 611
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
97-473 |
4.48e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 97 SEKAELQTALAHTQHAARQKEGE----SEDLASRLQYSRRRVGELERALSAvstqQKKADRYNKELTKERDALRL----- 167
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEEDKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAkkkae 1441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 168 ------ELYKNTQSNEDLKQEKSELEEKLRV-LVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEE 240
Cdd:PTZ00121 1442 eakkadEAKKKAEEAKKAEEAKKKAEEAKKAdEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 241 RAQLEAHLGQVMESVRQL-QMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQEL----ETSLAELRNQM 315
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAkKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeEARIEEVMKLY 1601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 316 AEPPPPEPPAGPSEVEQQLQAE-------------------------AEHLRKELEGLAGQLQAQVQDNEGLSRLNREQE 370
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEelkkaeeekkkveqlkkkeaeekkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 371 ERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSE------QH 444
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekkkiAH 1761
|
410 420 430
....*....|....*....|....*....|
gi 1955630634 445 VKRELGKKLGEL-QEKLSELKETVELKSQE 473
Cdd:PTZ00121 1762 LKKEEEKKAEEIrKEKEAVIEEELDEEDEK 1791
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
83-748 |
6.06e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 6.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 83 EQLQVHIQTIGILVSEKAELQTALAHTQ--HAARQKEGESEDLASRLQ----YSRRRVGELERALSAVSTQQKKADRYNK 156
Cdd:TIGR00618 212 CMPDTYHERKQVLEKELKHLREALQQTQqsHAYLTQKREAQEEQLKKQqllkQLRARIEELRAQEAVLEETQERINRARK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 157 ELtkerdALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQ 236
Cdd:TIGR00618 292 AA-----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 237 AMEERAQLEAHLgqvmESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMA 316
Cdd:TIGR00618 367 IREISCQQHTLT----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 317 EPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILET 396
Cdd:TIGR00618 443 CAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDN 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 397 MQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQS 476
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 477 LQQQRDQYLGHLQqyvaayQQLTSEKEVLHNQLLLQTQlvDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRA 556
Cdd:TIGR00618 603 LSEAEDMLACEQH------ALLRKLQPEQDLQDVRLHL--QQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 557 QLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRR 636
Cdd:TIGR00618 675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQART 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 637 LAHLLASAQKEPEAAAPAPGTGGDSVcGETHRALQGAMEKLQSRFMELMQEKADLKERVEE----LEHRCIQLSGETDTI 712
Cdd:TIGR00618 755 VLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSdediLNLQCETLVQEEEQF 833
|
650 660 670
....*....|....*....|....*....|....*.
gi 1955630634 713 GEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMK 748
Cdd:TIGR00618 834 LSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
331-732 |
6.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 331 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALS- 409
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 410 -----QNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSEL----KETVELKSQEAQSLQQQ 480
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 481 RDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQtQLVDQLQQQEAQGKAVAEMA--------------------------- 533
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 534 --------RQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLE----- 600
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelqle 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 601 -SREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQS 679
Cdd:COG4717 367 eLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1955630634 680 RFMELMQEKADLKERVEELEhrciqlsgETDTIGEYIALYQSQRAVLKERHRE 732
Cdd:COG4717 447 ELEELREELAELEAELEQLE--------EDGELAELLQELEELKAELRELAEE 491
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
97-248 |
7.68e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 97 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL----SAVSTQQKKADRYNKEL-----TKERDALRL 167
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIkrleLEIEEVEARIKKYEEQLgnvrnNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 168 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcEAPDANQQLQQAMEERAQLEAH 247
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-----ELAELEAELEELEAEREELAAK 171
|
.
gi 1955630634 248 L 248
Cdd:COG1579 172 I 172
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
385-631 |
7.76e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 40.20 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 385 EQAEARRQILET-MQNDRTTISRALSQnRELKEQLAELQSGFVKltnenmeiTSALQSEQhvkRELGKKLGELQEKLSEL 463
Cdd:NF012221 1565 ERAEADRQRLEQeKQQQLAAISGSQSQ-LESTDQNALETNGQAQ--------RDAILEES---RAVTKELTTLAQGLDAL 1632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 464 KETvelKSQEAQSLQQQRDQYLGHLQQYVAayQQLTSEKEVLHNQLL-LQTQLVDQLQQ-QEAQGKAVAEMARQElqetq 541
Cdd:NF012221 1633 DSQ---ATYAGESGDQWRNPFAGGLLDRVQ--EQLDDAKKISGKQLAdAKQRHVDNQQKvKDAVAKSEAGVAQGE----- 1702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 542 ERLEAATQQNQQLRAQlslmAHPGEGDGLDREEEEDEEEEEEEAVAvpqpmpsipEDLESR---EAMVAFFNSAVASAEE 618
Cdd:NF012221 1703 QNQANAEQDIDDAKAD----AEKRKDDALAKQNEAQQAESDANAAA---------NDAQSRgeqDASAAENKANQAQADA 1769
|
250
....*....|...
gi 1955630634 619 EQARLRGQLKEQR 631
Cdd:NF012221 1770 KGAKQDESDKPNR 1782
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
69-270 |
7.77e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 69 DEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL------- 141
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndlearl 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 142 --SAVSTQQKKADRYNKE-----------------LTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQL 202
Cdd:TIGR02169 789 shSRIPEIQAELSKLEEEvsriearlreieqklnrLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630634 203 NLEELQKKLEmtelllqqfssrceapDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK 270
Cdd:TIGR02169 869 ELEELEAALR----------------DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
112-484 |
8.11e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 112 AARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRynkeltkERDALRLELYKNTQSNEDLKQEKSELEEKLR 191
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-------RLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 192 VLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGqvMESVRQLQMERDKyaenLKG 271
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE--DLHKLEEALNDLEARLS--HSRIPEIQAELSK----LEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 272 ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmaeppppeppagpsevEQQLQAEAEHLRKELEGLAGQ 351
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ----------------IKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 352 L---QAQVQDNEGlsrlnreqeeR----LLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsg 424
Cdd:TIGR02169 870 LeelEAALRDLES----------RlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-- 937
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630634 425 fvKLTNENMEITSALQSEQHVKRELGKKLGELQ-----------------EKLSELKETVELKSQEAQSLQQQRDQY 484
Cdd:TIGR02169 938 --DPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeyeevlKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
95-561 |
8.25e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 95 LVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKN 172
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 173 TQSNEDLKQEKSELEEKlrvlVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqqlqqameeraqLEAHLGQVM 252
Cdd:pfam05483 163 TCARSAEKTKKYEYERE----ETRQVYMDLNNNIEKMILAFEELRVQAENARLE-----------------MHFKLKEDH 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 253 ESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELEtslaelrnqmaeppppEPPAGPSEVEQ 332
Cdd:pfam05483 222 EKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE----------------EKTKLQDENLK 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 333 QLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqeerLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNR 412
Cdd:pfam05483 286 ELIEKKDHLTKELEDIKMSLQRSMSTQKAL----------EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 413 ELKEQLAELqsgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEkLSELKETVELKSQEAQSLQQQRDQYLGHLQQYV 492
Cdd:pfam05483 356 ATTCSLEEL------LRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILAEDEKLLDEKKQFE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630634 493 AAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLM 561
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
451-559 |
8.49e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.18 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630634 451 KKLGELQEKLSELKETVELKSQEAQSLQQQrdqyLGHLQQYVAAYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVA 530
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDS----VANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQEL 125
|
90 100
....*....|....*....|....*....
gi 1955630634 531 EMARQELQETQERLEAATQQNQQLRAQLS 559
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLA 154
|
|
| |
