|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
368-895 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 771.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 368 QVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGP-- 445
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 446 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 525
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 526 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 605
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 606 LQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEG 685
Cdd:pfam15070 241 LQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 686 DGLDREEEEDEeeeeeeavaVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKE 765
Cdd:pfam15070 321 DGLESEEEEEE---------APRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 766 PEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLK 845
Cdd:pfam15070 392 PEHEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1955630610 846 ERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQ 895
Cdd:pfam15070 472 QRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
940-985 |
2.39e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 102.08 E-value: 2.39e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1955630610 940 SPRDNPTAQQIMQLLREMQNPRERPGLGSNPCIPFFYRADENDEVK 985
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
252-885 |
4.63e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.00 E-value: 4.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 252 VGELERALSAVSTQQKKADRYnKELTKERDALRLELYKN-----TQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQ 326
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLklrelEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 327 KKLEMTELLLQQfssrceapdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEnlkgESAMWRQRMQQMSEQVH 406
Cdd:COG1196 274 LELEELELELEE---------AQAEEYELLAELARLEQDIARLEERRRELEERLEELEE----ELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 407 TLREEKECSMSRVQELETSLAELRnqmaeppppeppagpSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNre 486
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAE---------------EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE-- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 487 qeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRE 566
Cdd:COG1196 404 ----------------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 567 LGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA 646
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 647 VAEMARQELQETQERLEAATQQNQQLRAQLSlmahpgegdgLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAmvaf 726
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAKAGRATFLP----------LDKIRARAALAAALARGAIGAAVDLVASDLREADA---- 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 727 FNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETH------RALQGAMEKLQSRFM 800
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAalleaeAELEELAERLAEEEL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 801 ELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLRLV 880
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*
gi 1955630610 881 GDRNE 885
Cdd:COG1196 774 REIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
188-901 |
2.62e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.87 E-value: 2.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 188 EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQK 267
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 268 KADRYNKELTKERDALRlelykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfsSRCEAPD 347
Cdd:TIGR02168 313 NLERQLEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 348 ANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKG-ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSL 426
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 427 AELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELW 501
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQarldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 502 G--------EQAEARRQILETM-QND--RTTI----SRALSQNRELKEQLAELQSGFVKLTNE----------------- 549
Cdd:TIGR02168 544 GgrlqavvvENLNAAKKAIAFLkQNElgRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDlvkfdpklrkalsyllg 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 550 NMEITSALQSEQHVKRELGKK--LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQL 627
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 628 LlqtQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVp 707
Cdd:TIGR02168 704 R---KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE- 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 708 qpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAaapapgtggdsvCGETHRA 787
Cdd:TIGR02168 780 -----AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA------------TERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 788 LQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKV 867
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
730 740 750
....*....|....*....|....*....|....
gi 1955630610 868 KLLELQELVLRLVGDRNEWHGRFLAAAQNPADEP 901
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-579 |
8.20e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 8.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 252 VGELERALSAVSTQQKKADRYnKELTKERDALRLELYknTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEM 331
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 332 TELLLQQ------------FSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesAMWRQRMQ 399
Cdd:TIGR02168 272 LRLEVSEleeeieelqkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 400 QMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEG 479
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ--IASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 480 LSRLNREQEERLLELERAAELWG-----EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEIT 554
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEEleelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
330 340
....*....|....*....|....*
gi 1955630610 555 SALQSEQHVKRELGKKLGELQEKLS 579
Cdd:TIGR02168 506 EGVKALLKNQSGLSGILGVLSELIS 530
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-747 |
2.42e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 2.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 198 ALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELT 277
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 278 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEApdANQQLQQAME 357
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE--LAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 358 ERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPP 437
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 438 PPEPPAGPSEVEQQLQAEAEHLRKELEgLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEA--RRQILETM 515
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLL-LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAalEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 516 QNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSL 595
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 596 QQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQ 675
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630610 676 LSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNsaVASAEEEQARLRGQLKE 747
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD--LEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
187-664 |
6.32e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 6.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 187 EEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQ 266
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 267 KKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAP 346
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA--ELEEEEEALLELLA 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 347 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAmwRQRMQQMSEQVHTLREEKECSMSRVQELETSL 426
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA--ALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 427 AELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE 506
Cdd:COG1196 545 AAALQN-----------IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 507 ARRQILETMQ-------NDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLS 579
Cdd:COG1196 614 RYYVLGDTLLgrtlvaaRLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 580 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQ 659
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*
gi 1955630610 660 ERLEA 664
Cdd:COG1196 774 REIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
321-668 |
3.51e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 3.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 321 NLEELQKKLEMTELLLQqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQ 400
Cdd:TIGR02168 678 EIEELEEKIEELEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 401 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPppeppagpsEVEQQLQAEAEHLRKELEGLAGQLQAqvqdnegL 480
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---------AQIEQLKEELKALREALDELRAELTL-------L 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 481 SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNE-------NMEI 553
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNErasleeaLALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 554 TSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDqylgHLQQYVAAYQQLTSEK-EVLHNQLLLQTQ 632
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID----NLQERLSEEYSLTLEEaEALENKIEDDEE 968
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1955630610 633 L----VDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 668
Cdd:TIGR02168 969 EarrrLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
252-684 |
3.70e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 70.18 E-value: 3.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 252 VGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEM 331
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 332 TELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE 411
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 412 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERL 491
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 492 LELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQHVKRELgKKL 571
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG---LPPDLSPEELLELLDRIEELQELL-REA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 572 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYvAAYQQLTSEKEVLHNQLLLQTQLVDQL--QQQEAQGKAVAE 649
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELleALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*
gi 1955630610 650 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGE 684
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-817 |
3.52e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 3.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 198 ALREQLQVHiqTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELT 277
Cdd:COG1196 217 ELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 278 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrceapdANQQLQQAME 357
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE---------AEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 358 ERAQLEAhlgQVMESVRQLQMERDKYAENLKGESAMwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmAEPP 437
Cdd:COG1196 366 ALLEAEA---ELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEE-EEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 438 PPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQN 517
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 518 DRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQekLSELKETVELKSQEAQSLQQ 597
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP--LDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 598 QRDQYLGHLQQYVAAYQQltsekeVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLS 677
Cdd:COG1196 599 AAVDLVASDLREADARYY------VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 678 LMAHPGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVrcRRLAH 757
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEAL----------LAEEEEERELAEAEEERLEEELEEEALEEQLEAERE--ELLEE 740
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630610 758 LLASAQKEPEAAAPAPGTGGD-SVCGETHRALQGAMEKL--------------QSRFMELMQEKADLKERVEELE 817
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDlEELERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEEARETLE 815
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
155-674 |
1.05e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 155 RQLSQQLNGLVCESATcvngegpaSSANLKDLEEKKE-CHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQ 233
Cdd:PRK02224 202 KDLHERLNGLESELAE--------LDEEIERYEEQREqARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 234 KEGESEDLASRLQYSRRRVGELERALSAV-------STQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEE 306
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLlaeagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 307 KLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEN 386
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE--EIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 387 LKGESAMwRQRMQQMSEQVHTLREEKEC------------------SMSRVQELETSLAELRNQMAEPPPP-EPPAGPSE 447
Cdd:PRK02224 428 EAELEAT-LRTARERVEEAEALLEAGKCpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERlERAEDLVE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 448 VEQQLQAEAEHlRKELEGLAGQLQAQV-QDNEGLSRLNreqeERLLELERAAELWGEQAEARRQILETMQNDRTTISRAL 526
Cdd:PRK02224 507 AEDRIERLEER-REDLEELIAERRETIeEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 527 SQNRELKEQLAELQSGFVKLTNENMEITS---ALQSEQHVKRELGKKLGELQEKLSELKETV-ELKSQEAQSLQQQRDQY 602
Cdd:PRK02224 582 AELKERIESLERIRTLLAAIADAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEY 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630610 603 LGHLQQYVaayQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQgkavaemaRQELQETQERLEAATQQNQQLRA 674
Cdd:PRK02224 662 LEQVEEKL---DELREERDDLQAEIGAVENELEELEELRER--------REALENRVEALEALYDEAEELES 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
152-432 |
1.45e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 152 ESLRQLSQQLNGLVCESATCVNGEGPASSANLKDLE---EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQ 228
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 229 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQqkkadryNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKL 308
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERR-------LEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 309 RVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGqvmesvrQLQMERDKYAENLK 388
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELE--ELSEELRELESKRSELRRELEELREKLAQLELRLE-------GLEVRIDNLQERLS 946
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1955630610 389 GESAMwrqrMQQMSEQVHTLREEKEcsmsrvQELETSLAELRNQ 432
Cdd:TIGR02168 947 EEYSL----TLEEAEALENKIEDDE------EEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
419-818 |
2.33e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 419 VQELETSLAELRNQMAEPPPPeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAA 498
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEK---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 499 ELWGEQAEARRQILETMQNDRTTISRALSQNR----ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGEL 574
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 575 QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQgkavaemARQE 654
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL-------LRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 655 LQETQERLEAATQQNQQLRAQLSLMahpgegdgldreeeedeeeeeeeavavpqpmpsipedlesreamvaffNSAVASA 734
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEEL------------------------------------------------REKLAQL 927
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 735 EEEQARLRGQLKEQRVRCRRLAHLLAsaqkEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVE 814
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003
|
....
gi 1955630610 815 ELEH 818
Cdd:TIGR02168 1004 FLTA 1007
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
187-874 |
2.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 187 EEKKECHQKQgALREQLQVHIQTIGilVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQ 266
Cdd:TIGR02169 262 ELEKRLEEIE-QLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 267 KKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtelllqqfSSRCEAP 346
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN---------ELKRELD 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 347 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLREEKECSMSRVQELETSL 426
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 427 AELRNQMAEPPPPEPPAGPSEVEQqlQAEAEHLRKELEGLAGQ----------------------LQAQVQDNEG----- 479
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGG--RAVEEVLKASIQGVHGTvaqlgsvgeryataievaagnrLNNVVVEDDAvakea 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 480 --------LSR-----LNREQEERLLELERAAELWGEQA-----------EARRQILETmqndrTTISRALSQNRELKEQ 535
Cdd:TIGR02169 564 iellkrrkAGRatflpLNKMRDERRDLSILSEDGVIGFAvdlvefdpkyePAFKYVFGD-----TLVVEDIEAARRLMGK 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 536 LAelqsgFVKLTNENME----ITS---ALQSEQHVKRELGKKLGELQEKLSELKetvelksQEAQSLQQQRDQYLGHLQQ 608
Cdd:TIGR02169 639 YR-----MVTLEGELFEksgaMTGgsrAPRGGILFSRSEPAELQRLRERLEGLK-------RELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 609 YVAAYQQLTSEKEVLHNQLllqtqlvDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMahpgegdgl 688
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL--------- 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 689 dreeeEDEEEEEEEAVavpqpmpsipEDLESREAMVAF--FNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEP 766
Cdd:TIGR02169 771 -----EEDLHKLEEAL----------NDLEARLSHSRIpeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 767 EAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKE 846
Cdd:TIGR02169 836 QELQ------------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
730 740
....*....|....*....|....*...
gi 1955630610 847 RHREKEEYISRLAQDKEEMKVKLLELQE 874
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
229-663 |
4.70e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 229 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRY--NKELTKERDALRLELYKNTQSNEDLKQEKSELEE 306
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLlqLLPLYQELEALEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 307 klrvLVTEKAGMQLNLEELQKKLEmTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEN 386
Cdd:COG4717 161 ----LEEELEELEAELAELQEELE-ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 387 LKGESAmwRQRMQQMSEQ------VHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLR 460
Cdd:COG4717 236 LEAAAL--EERLKEARLLlliaaaLLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 461 KELEGLA-GQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAEL 539
Cdd:COG4717 314 EELEEEElEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 540 QSGFVKLTNENMEITSALQS---------EQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQyLGHLQQYV 610
Cdd:COG4717 394 AEEYQELKEELEELEEQLEEllgeleellEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELA 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1955630610 611 AAYQQLTSEKEVLhnqlllqtqlvdqlqQQEAQGKAVAEMARQELQETQERLE 663
Cdd:COG4717 473 ELLQELEELKAEL---------------RELAEEWAALKLALELLEEAREEYR 510
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
267-675 |
8.74e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 8.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 267 KKADRYNKELTKERDalrlELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAP 346
Cdd:TIGR04523 138 KNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 347 DA---------------NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREE 411
Cdd:TIGR04523 214 KSlesqiselkkqnnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL--------SEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 412 KEcsmSRVQELETSLAELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLqaqVQDNEGLSRLNreqeerl 491
Cdd:TIGR04523 286 LE---KQLNQLKSEISDLNNQ-----------KEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLN------- 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 492 leleraaelwgeqaearrqilETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 571
Cdd:TIGR04523 342 ---------------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 572 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 651
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420
....*....|....*....|....
gi 1955630610 652 RQELQETQERLEAATQQNQQLRAQ 675
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEE 504
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
217-678 |
1.09e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.99 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 217 KAELQTALahtQHAARQKEGESEDLASrlqysrrrVGELERALSAVstqqKKADRYNKELtkerDALRLELyknTQSNED 296
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 297 LKQEKSELE--EKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQL--QQAMEERAQLEahlgqvmes 372
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQAA--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 373 vrqlqmerdkYAENLkgesamwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEppagpsEVEQQ 451
Cdd:PRK11281 165 ----------LYANS--------QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 452 LQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtTISRALSQNRE 531
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 532 LKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELKSQEAQ----- 593
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 594 -SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLLlqtQLVDqlqqqeaqgkavaemARQELQEtqerleaatQQNQ 670
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALL---QLLD---------------ERRELLD---------QLNK 421
|
....*...
gi 1955630610 671 QLRAQLSL 678
Cdd:PRK11281 422 QLNNQLNL 429
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
289-668 |
1.17e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 289 KNTQSNEDLKQEKSELEEKLRvlvtekaGMQLNLEELQKKL------EMTELLLQQFSSRCEapDANQQLQQAMEERAQL 362
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLR-------QAQAELEALKDDNdeetreTLSTLSLRQLESRLA--QTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 363 EAHLgqvmeSVRQLQMERdkyAENLKGESAmwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEp 441
Cdd:PRK11281 148 NSQL-----VSLQTQPER---AQAALYANS---QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 442 pagpsEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtT 521
Cdd:PRK11281 216 -----EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--L 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 522 ISRALSQNRELKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELK 588
Cdd:PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLA 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 589 SQEAQ------SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLL--------LQTQLVDQLQQQEAQGKAVaEMAR 652
Cdd:PRK11281 360 DRIADlrleqfEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALLqllderreLLDQLNKQLNNQLNLAINL-QLNQ 437
|
410
....*....|....*.
gi 1955630610 653 QELQETQERLEAATQQ 668
Cdd:PRK11281 438 QQLLSVSDSLQSTLTQ 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
409-847 |
1.23e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 409 REEKECSMSRVQELETSLAELRNQMaeppppeppagpseveQQLQAEAEHLRKELEglagqLQAQVQDNEGLSRLNreqe 488
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQL----------------ERLRREREKAERYQA-----LLKEKREYEGYELLK---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 489 erlleleraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLA-ELQSGFVKLTNENMEITSALQSEQhvkREL 567
Cdd:TIGR02169 231 --------------EKEALERQK-EAIERQLASLEEELEKLTEEISELEkRLEEIEQLLEELNKKIKDLGEEEQ---LRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 568 GKKLGELQEKLSELKETVELKSQEAQSLQQQRdqylghlQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAV 647
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 648 AEMARQELQETQERLEAATQQNQQLRAQLSLMAHpgEGDGLDREEEEDEeeeeeeavavpqpmpsipEDLESREAMVAFF 727
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKR--EINELKRELDRLQ------------------EELQRLSEELADL 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 728 NSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEpeaaapapgtggdsvcgethralqgaMEKLQSRFMELMQEKA 807
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--------------------------LSKYEQELYDLKEEYD 479
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630610 808 DLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 847
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
249-432 |
1.32e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 249 RRRVGELERALSAVSTQQKKADRYNkelTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 328
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLA---ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 329 LEMTELLLQQFSSRCEApDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTL 408
Cdd:COG4913 325 LDELEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|....
gi 1955630610 409 REEKECSMSRVQELETSLAELRNQ 432
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAE 427
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
402-825 |
4.84e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.73 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 402 SEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQLQ---AQVQDNE 478
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAE-----SDLEQDYQAASDHLNLVQTALRQQEKierYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 479 GLSRLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSALQ 558
Cdd:PRK04863 360 LEERLE------------------EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL------DVQQTRAIQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 559 SEQHVKR-ELGKKLGEL----QEKLSELKETVELKSQEAQ----SLQQQRDQYLGHLQQYVAAYQqltsekevlhnqllL 629
Cdd:PRK04863 416 YQQAVQAlERAKQLCGLpdltADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSQFEQAYQ--------------L 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 630 QTQLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSLMAHpgegdglDREEEEDEEEEEEEAVAVPQP 709
Cdd:PRK04863 482 VRKIAGEVSRSEAWDVA------RELLRRLREQRHLAEQLQQLRMRLSELEQ-------RLRQQQRAERLLAEFCKRLGK 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 710 MPSIPEDLES----REAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETH 785
Cdd:PRK04863 549 NLDDEDELEQlqeeLEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEF--EDS 626
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630610 786 RALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSG 825
Cdd:PRK04863 627 QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
184-878 |
7.92e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 7.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 184 KDLEEKKECHQKQGALREQLQVHIQTigilvsEKAELQTALAHTQHAARQKEGESEDLASRLQYSrrrVGELERALSAVS 263
Cdd:pfam15921 92 RRLNESNELHEKQKFYLRQSVIDLQT------KLQEMQMERDAMADIRRRESQSQEDLRNQLQNT---VHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 264 TQQKKADRYNKELTK---ERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFs 340
Cdd:pfam15921 163 DMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIF- 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 341 srceaPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECS----M 416
Cdd:pfam15921 242 -----PVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmyM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 417 SRVQELETSLAELRNQMAEPPPPEPPAGPsEVEQQL------QAEAEHLRKELEGLAGQLQAQVQdnEGLSRLNREQEER 490
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKIE-ELEKQLvlanseLTEARTERDQFSQESGNLDDQLQ--KLLADLHKREKEL 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 491 LLELERAAELWGEQAEARRQI--LETMQNDRTT-ISRALSQNRELKEQLA---ELQSGFVKLTNENMEITSALQSEQHVK 564
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMeVQRLEALLKAMKSECQgqmERQMAAIQGKNESLEKVSSLTAQLEST 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 565 RELGKKLGE----------------------LQEK----------LSELKETVELKSQEAQSLQQQRDqYLGHLQQYVAA 612
Cdd:pfam15921 474 KEMLRKVVEeltakkmtlessertvsdltasLQEKeraieatnaeITKLRSRVDLKLQELQHLKNEGD-HLRNVQTECEA 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 613 YQQLTSEK----EVLHNQLLLQTQLVDQ-------LQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAh 681
Cdd:pfam15921 553 LKLQMAEKdkviEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE- 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 682 pgegdgLDREEEEDEEEEEEEAVA-VPQPMPSIPEDLESREAMVaffNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLA 760
Cdd:pfam15921 632 ------LEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRNEL---NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLK 702
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 761 SAQKEPEAA----APAPGTGGDSV-----CGETHRALQGAMEKLQSRFMELMQ-------EKADLKERVEELEHRCIQLS 824
Cdd:pfam15921 703 SAQSELEQTrntlKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEamtnankEKHFLKEEKNKLSQELSTVA 782
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1955630610 825 GETDTIGEYIALYQSQRAVLKERHREKEeyisrLAQDKEEMkvKLLELQELVLR 878
Cdd:pfam15921 783 TEKNKMAGELEVLRSQERRLKEKVANME-----VALDKASL--QFAECQDIIQR 829
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
446-676 |
8.54e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 8.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 446 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSrlnreqeerlleleraaelwgeQAEARRQILETMQNDRTTISRA 525
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 526 LSQNRELKEQLAELQSgfvKLTNENMEITSALQSEqhVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 605
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630610 606 LQQYVA-AYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQL 676
Cdd:COG3206 307 LQQEAQrILASLEAELEALQARE---ASLQAQLAQLEARLAELPE-LEAELRRLEREVEVARELYESLLQRL 374
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
183-864 |
2.35e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 183 LKDLEEKKECHQKQGALREQLQVHIQTIGILVSEKAEL-------QTALAHTQHAARQKEGESEDLASRL---QYSRRRV 252
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIrdqitskEAQLESSREIVKSYENELDPLKNRLkeiEHNLSKI 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 253 GELERALSAVSTQQKKADRYNKELTKER-------DALRLELYKNTQSN---------------EDLKQEKSELEEKLRV 310
Cdd:TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMekvfqgtDEQLNDLYHNHQRTvrekerelvdcqrelEKLNKERRLLNQEKTE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 311 LVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCE------APDANQQLQQA-------MEERAQLEAHL-GQVMESVRQL 376
Cdd:TIGR00606 345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgferGPFSERQIKNFhtlvierQEDEAKTAAQLcADLQSKERLK 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 377 QMERDKYAENLKGESAMWRQRMQQMSEQVHTLR------EEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQ 450
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvikelQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 451 QLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNdRTTISRALSQNR 530
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN-KKQLEDWLHSKS 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 531 ELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELGKK---LGELQEKLSELKETVELKS------QEAQSLQQQRDQ 601
Cdd:TIGR00606 584 KEINQTRD------RLAKLNKELASLEQNKNHINNELESKeeqLSSYEDKLFDVCGSQDEESdlerlkEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 602 YLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLeaatqQNQQLRAQLSLMAH 681
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL-----KKKEKRRDEMLGLA 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 682 PGEGDGLDREEEEDEEEEEEEAvAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQA------RLRGQLKEQRvrcRRL 755
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimeRFQMELKDVE---RKI 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 756 AHLLASAQkepeaaapapGTGGDSVCGETHRALQGAMEKLQ---SRFMELMQEKADLKERVEELEHRCIQLSGETDTIGE 832
Cdd:TIGR00606 809 AQQAAKLQ----------GSDLDRTVQQVNQEKQEKQHELDtvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878
|
730 740 750
....*....|....*....|....*....|..
gi 1955630610 833 YIALYQSQRAVLKERHREKEEYISRLAQDKEE 864
Cdd:TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
302-656 |
2.55e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 302 SELEEKLRVLVTEKAgMQLNLEELQKKL---EMTELLLqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQM 378
Cdd:TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKreyEGYELLK--------------EKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 379 ERDKYAEnlkgESAMWRQRMQQMSEQVHTLREEKECSM-SRVQELETSLAELRNQMAEPPPPEPPAGpsEVEQQLQAEAE 457
Cdd:TIGR02169 259 EISELEK----RLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAE--ERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 458 HLRKELEGLAGQLQAQVQDNEGLS--------RLNrEQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQN 529
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTeeyaelkeELE-DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 530 RELKEQLAElqsgfvKLTNENMEITSALQseqhvkrelgkKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQY 609
Cdd:TIGR02169 412 QEELQRLSE------ELADLNAAIAGIEA-----------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1955630610 610 VAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQ 656
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
501-889 |
3.62e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 501 WGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvKRELGKKLGELQEKLSE 580
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE-----KLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 581 LKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLhNQLLLQTQLVDQLQQQEAQGKAvaEMARQELQETQE 660
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAEEL--EELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 661 RLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEA--VAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQ 738
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 739 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGEThRALQGAMEKLQSRFMELMQEKADLKERVEELEH 818
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 819 RCIQLSGETDTIGEYIALYQ--SQRAVLKERHREKEEYISRLA---------QDKEEMKVKLLELQELVLRLVGDRNEWH 887
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQLEELLgeleelleaLDEEELEEELEELEEELEELEEELEELR 452
|
..
gi 1955630610 888 GR 889
Cdd:COG4717 453 EE 454
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
564-819 |
4.16e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 564 KRELGKKLGELQEKLSELKETvelkSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnQLLLQTQLVDQLQQQEAQ 643
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA----HEALEDAREQIEL-LEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 644 GKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREeeedeeeeeeeavavpqpmpsipEDLESReam 723
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-----------------------EQLERE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 724 vaffnsaVASAEEEQARLRGQLKEQRVRCRRL-------AHLLASAQKEPEAAAPApgtggdsvCGETHRALQGAMEKLQ 796
Cdd:COG4913 347 -------IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEA--------LEEELEALEEALAEAE 411
|
250 260
....*....|....*....|...
gi 1955630610 797 SRFMELMQEKADLKERVEELEHR 819
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
246-471 |
4.21e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 246 QYSRRRVGELERALSAVSTQqkkADRYNKELTKERDALR--LELYKNTQSNEDLK---QEKSELEEKLRVLVTEKAGMQL 320
Cdd:COG3206 164 QNLELRREEARKALEFLEEQ---LPELRKELEEAEAALEefRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 321 NLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesamwrqrmQQ 400
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ----------QE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630610 401 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPeppagpsEVE-QQLQAEAEHLRKELEGLAGQLQ 471
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL-------EAElRRLEREVEVARELYESLLQRLE 375
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
395-829 |
4.61e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 4.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 395 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQ--LQA 472
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE-----SDLEQDYQAASDHLNLVQTALRQQekIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 473 QVQDNEGLS-RLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 551
Cdd:COG3096 352 YQEDLEELTeRLE------------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 552 EITSALQSEQHVKR-ELGKKLGEL--------QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSekev 622
Cdd:COG3096 408 QQTRAIQYQQAVQAlEKARALCGLpdltpenaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK---- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 623 lhnqlllqtqLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSlmahpgEGDGLDREEEEDEEEEEEE 702
Cdd:COG3096 484 ----------IAGEVERSQAWQTA------RELLRRYRSQQALAQRLQQLRAQLA------ELEQRLRQQQNAERLLEEF 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 703 AVAVPQPMPS---IPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAhllasaQKEPE-AAAPAPGTGGD 778
Cdd:COG3096 542 CQRIGQQLDAaeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA------ARAPAwLAAQDALERLR 615
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630610 779 SVCGET---HRALQGAMEKLQSRFMELMQEKADLKERVEELE---HRCIQLSGETDT 829
Cdd:COG3096 616 EQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
295-482 |
5.89e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 295 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQvmesVR 374
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD----LA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 375 QLQMERDKyaenlkgesamWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQA 454
Cdd:COG4913 689 ALEEQLEE-----------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190
....*....|....*....|....*....|
gi 1955630610 455 EA--EHLRKELEGLAGQLQAQVQDNEGLSR 482
Cdd:COG4913 758 ALgdAVERELRENLEERIDALRARLNRAEE 787
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
250-683 |
9.38e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 9.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 250 RRVGELERALSAVSTQQKKadryNKELTKERDAL---RLELYKNTQSNEDLKQEKSELEEKLRVLVT-----EKAGM-QL 320
Cdd:COG3096 279 ERRELSERALELRRELFGA----RRQLAEEQYRLvemARELEELSARESDLEQDYQAASDHLNLVQTalrqqEKIERyQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 321 NLEELQKKLEMtelllqqfssrceapdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQ 400
Cdd:COG3096 355 DLEELTERLEE----------------QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD----VQQTRAIQ 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 401 MSEQVHTLREEKECSmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQL---Q 471
Cdd:COG3096 415 YQQAVQALEKARALC--GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSvADAARRQFEkayelVCKIAGEVersQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 472 AQVQDNEGLSRlnreqeerlleleraaelWGEQaEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 551
Cdd:COG3096 493 AWQTARELLRR------------------YRSQ-QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRI------GQ 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 552 EITSALqseqhvkrelgkklgELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQT 631
Cdd:COG3096 548 QLDAAE---------------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALE 612
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630610 632 QLVDQLQQQEAQGKAV----AEMARQELQETQERLEAAtQQNQQLRAQLSLMAHPG 683
Cdd:COG3096 613 RLREQSGEALADSQEVtaamQQLLEREREATVERDELA-ARKQALESQIERLSQPG 667
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
584-671 |
9.72e-05 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 44.88 E-value: 9.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 584 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVlhNQLL--------------LQTQLVDQLQQQEAQGKAVAE 649
Cdd:NF038305 102 TRRLSTQALQQINQQAGQQETQLQQQLNQLQAQTSPQQL--NQLLkseqkqgqalasgqLPEEQKEQLQQFKSNPQALDK 179
|
90 100
....*....|....*....|..
gi 1955630610 650 MARQELQETQERLEAATQQNQQ 671
Cdd:NF038305 180 FLAQQLTQIRTQAEEAEKQARL 201
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
181-866 |
1.07e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 181 ANLKDLEEKKECHQKQGALREQL-----QVHIQTIGILVSEKAELQTALAHTQ--HAARQKEGESEDLASRLQ----YSR 249
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCtpcmpDTYHERKQVLEKELKHLREALQQTQqsHAYLTQKREAQEEQLKKQqllkQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 250 RRVGELERALSAVSTQQKKADRYNKELtkerdALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL 329
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAA-----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 330 EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgqvmESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR 409
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 410 EEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEE 489
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 490 RLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGK 569
Cdd:TIGR00618 498 ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQ 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 570 KLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQqyvaayQQLTSEKEVLHNQLLLQTQlvDQLQQQEAQGKAVAE 649
Cdd:TIGR00618 578 CDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH------ALLRKLQPEQDLQDVRLHL--QQCSQELALKLTALH 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 650 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNS 729
Cdd:TIGR00618 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 730 AVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcGETHRALQGAMEKLQSRFMELMQEKADL 809
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630610 810 KERVEE----LEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMK 866
Cdd:TIGR00618 809 GQEIPSdediLNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
231-512 |
1.15e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.89 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 231 ARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKNTQSNEDLKQEKSELEEKL 308
Cdd:pfam05557 306 ARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRaiLESYDKELTMSNYSPQLLERIEEA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 309 RVLVTEkagMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQL---QQAMEERAQLEAHLGQVMESVRQLQMERDKYAE 385
Cdd:pfam05557 386 EDMTQK---MQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQAlrqQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 386 nlkgesamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAelrnqmaeppppeppagpSEVEQQLQAEAEHLRKELEG 465
Cdd:pfam05557 463 ---------QKNELEMELERRCLQGDYDPKKTKVLHLSMNPA------------------AEAYQQRKNQLEKLQAEIER 515
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1955630610 466 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQIL 512
Cdd:pfam05557 516 LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
630-879 |
1.58e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 630 QTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgldreeeedeeeeeeeavavpqp 709
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 710 mpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRvrcRRLAHLLASAQKEPEAAAPAPGTGGDSVcgethRALQ 789
Cdd:COG4942 69 -----RRIRALEQELAALEAELAELEKEIAELRAELEAQK---EELAELLRALYRLGRQPPLALLLSPEDF-----LDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 790 GAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKL 869
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250
....*....|
gi 1955630610 870 LELQELVLRL 879
Cdd:COG4942 216 AELQQEAEEL 225
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
274-590 |
1.63e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 274 KELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqQLQ 353
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEKLEKEVKELEELKE------EIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 354 QAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRN 431
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 432 QMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE-ARR 509
Cdd:PRK03918 322 EINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEkAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 510 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITsalqsEQHVKRELGKKLGELQEKLSELKETVELKS 589
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-----EEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
.
gi 1955630610 590 Q 590
Cdd:PRK03918 477 K 477
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
210-379 |
1.84e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 210 IGILVSEKAELQTALAHTQHAARQKEGESEDLASRL---------QYSRRRVGELERALSAVSTQQKKADRYN---KELT 277
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERRealqrlaeySWDEIDVASAEREIAELEAELERLDASSddlAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 278 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK--KLEMTELLLQQFSSRCEAPDANQQLQQA 355
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlaRLELRALLEERFAAALGDAVERELRENL 771
|
170 180
....*....|....*....|....
gi 1955630610 356 MEERAQLEAHLGQVMESVRQLQME 379
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
183-364 |
1.93e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 183 LKDLEEKKECHQKQGALREQLQVHIQTIGILVSEKAE-----LQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELER 257
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLEARLDALREELDELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 258 ALSAVSTQQKkadrynKELTKERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQ 337
Cdd:COG4913 331 QIRGNGGDRL------EQLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180
....*....|....*....|....*....
gi 1955630610 338 QFSSRCEAP--DANQQLQQAMEERAQLEA 364
Cdd:COG4913 398 EELEALEEAlaEAEAALRDLRRELRELEA 426
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
150-388 |
2.05e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 150 STESLRQLSQQLNGLvcesatcvNGEGPASSANLKDLEEK-KECHQKQGALREQLQVHIQTIGILVSEKAELQTALAhtq 228
Cdd:TIGR02169 714 ASRKIGEIEKEIEQL--------EQEEEKLKERLEELEEDlSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN--- 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 229 haarqkEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKL 308
Cdd:TIGR02169 783 ------DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 309 RVLVTEKAGMQLNLEELQKKLEmtelllqqfssrceapDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK 388
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALR----------------DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
348-673 |
2.18e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 348 ANQQLQQAMEERAQLEAHLGQVmESVRQLQMERDKYAENLKGESAMWRQRMQQMS----EQVHTLREEKECSMSRVQELE 423
Cdd:TIGR00618 154 FAQFLKAKSKEKKELLMNLFPL-DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 424 TSLAELRnqmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEglsRLNREQEERLLELERAAELWGE 503
Cdd:TIGR00618 233 EALQQTQ---QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE---RINRARKAAPLAAHIKAVTQIE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 504 QAeaRRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTN---ENMEITSALQSEQHVKRELGKKLGELQE--KL 578
Cdd:TIGR00618 307 QQ--AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQHihTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 579 SELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQET 658
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330
....*....|....*
gi 1955630610 659 QERLEAATQQNQQLR 673
Cdd:TIGR00618 465 AQSLKEREQQLQTKE 479
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
449-850 |
2.49e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 449 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALS- 527
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 528 -----QNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSEL----KETVELKSQEAQSLQQQ 598
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 599 RDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQtQLVDQLQQQEAQGKAVAEMA--------------------------- 651
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 652 --------RQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLE----- 718
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelqle 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 719 -SREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQS 797
Cdd:COG4717 367 eLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1955630610 798 RFMELMQEKADLKERVEELEhrciqlsgETDTIGEYIALYQSQRAVLKERHRE 850
Cdd:COG4717 447 ELEELREELAELEAELEQLE--------EDGELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
254-473 |
2.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 254 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 333
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 334 LLLQQFSsrceapdanqQLQQAMEERAQLEAHLGQ--VMESVRQLQMERdKYAENLKGESAMWRQRMQQMSEQVHTLREE 411
Cdd:COG4942 104 EELAELL----------RALYRLGRQPPLALLLSPedFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630610 412 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQ 473
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelaeLQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
501-676 |
2.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 501 WGEQAEARRQILETMQNDRTTISRALSQN------RELKEQLAELQSGFVKLTNENMEItsalqseqhvkRELGKKLGEL 574
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL-----------AALEEQLEEL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 575 QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlqtqlvDQLQQQEAQGKAVAEMARQe 654
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL------EERFAAALGDAVERELREN- 770
|
170 180
....*....|....*....|..
gi 1955630610 655 lqeTQERLEAATQQNQQLRAQL 676
Cdd:COG4913 771 ---LEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
503-676 |
2.95e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 503 EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLtnenmeitsALQSEQHVKRELGKKLGELQEKLSELK 582
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 583 ETVELKSQEAQSLQQQRDQY-LGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 661
Cdd:COG4913 316 ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170
....*....|....*
gi 1955630610 662 LEAATQQNQQLRAQL 676
Cdd:COG4913 396 LEEELEALEEALAEA 410
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
186-654 |
5.44e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 186 LEEKKECHQKQgalREQLQVHIQTIGILVSEKAELQTALAHTqHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ 265
Cdd:TIGR00618 475 LQTKEQIHLQE---TRKKAVVLARLLELQEEPCPLCGSCIHP-NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 266 ----QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEMTELLLQQFSS 341
Cdd:TIGR00618 551 ltseRKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT-------EKLSEAEDMLACEQHALLRKLQP 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 342 RCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQlQMERDKYAENLKGESAMWRQR------MQQMSEQVHTLREEKECS 415
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ-ERVREHALSIRVLPKELLASRqlalqkMQSEKEQLTYWKEMLAQC 702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 416 MSRVQELETSLAELRNQMAEPPPPEPPAGpSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEglsrlnreqeerllele 495
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLG-SDLAAREDALNQSLKELMHQARTVLKARTEAHF----------------- 764
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 496 raaelwgeqaearrqiletmqndrttisralsqnRELKEQLAELQSGfvkltnenmeitsalQSEQHVKRELGKKLGELQ 575
Cdd:TIGR00618 765 ----------------------------------NNNEEVTAALQTG---------------AELSHLAAEIQFFNRLRE 795
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 576 EKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQL-LLQTQLVDQLQQQEAQGKAVAEMARQE 654
Cdd:TIGR00618 796 EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEItHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
531-677 |
5.58e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 531 ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKR--ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH--L 606
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvI 265
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630610 607 QQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA-VAEMARQELQETQERLEAATQQNQQLRAQLS 677
Cdd:COG3206 266 QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLA 337
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
228-819 |
5.97e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 5.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 228 QHAARQKEGESED---LASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKerdalrlelykNTQSNEDLKQEKSEL 304
Cdd:PRK04863 495 WDVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK-----------NLDDEDELEQLQEEL 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 305 EEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRC----EAPDANQQLQ----QAMEERAQLEAHLGQVMESVRQL 376
Cdd:PRK04863 564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawlAAQDALARLReqsgEEFEDSQDVTEYMQQLLEREREL 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 377 QMERDKYAEnlkgesamwrqRMQQMSEQVHTLREEKECSMSRVQELE-----TSLAELRNQMAEPPPPEPPAGPSE---- 447
Cdd:PRK04863 644 TVERDELAA-----------RKQALDEEIERLSQPGGSEDPRLNALAerfggVLLSEIYDDVSLEDAPYFSALYGParha 712
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 448 -VEQQLQAEAEHLrKELEGLAGQLQAQVQDNEGL--SRLNREQEERLLELERAAELW-----------GEqaEARRQILE 513
Cdd:PRK04863 713 iVVPDLSDAAEQL-AGLEDCPEDLYLIEGDPDSFddSVFSVEELEKAVVVKIADRQWrysrfpevplfGR--AAREKRIE 789
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 514 TMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVkRELGKKLGELQEKLSELKETVelksqeaq 593
Cdd:PRK04863 790 QLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAEL-RQLNRRRVELERALADHESQE-------- 860
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 594 slQQQRDQYLgHLQQYVAAYQQLTSEKEVLHNQLL------LQTQLvDQLQQQEA----QGKAVAEMARQ--ELQETQER 661
Cdd:PRK04863 861 --QQQRSQLE-QAKEGLSALNRLLPRLNLLADETLadrveeIREQL-DEAEEAKRfvqqHGNALAQLEPIvsVLQSDPEQ 936
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 662 LEAATQQNQQLRAQLSLMAhpGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQARL 741
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAK--QQAFALTEVVQRRAHFSYEDAA----------EMLAKNSDLNEKLRQRLEQAEQERTRA 1004
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955630610 742 RGQLKEQRVRCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKAdlKERVEELEHR 819
Cdd:PRK04863 1005 REQLRQAQAQLAQYNQVLASLKSSYDAKR------------QMLQELKQELQDLGVPADSGAEERA--RARRDELHAR 1068
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-602 |
6.82e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 230 AARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRynkeltkERDALRLELYKNTQSNEDLKQEKSELEEKLR 309
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-------RLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 310 VLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGqvMESVRQLQMERDKyaenLKG 389
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE--DLHKLEEALNDLEARLS--HSRIPEIQAELSK----LEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 390 ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmaeppppeppagpsevEQQLQAEAEHLRKELEGLAGQ 469
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ----------------IKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 470 L---QAQVQDNEGlsrlnreqeeR----LLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsg 542
Cdd:TIGR02169 870 LeelEAALRDLES----------RlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-- 937
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630610 543 fvKLTNENMEITSALQSEQHVKRELGKKLGELQ-----------------EKLSELKETVELKSQEAQSLQQQRDQY 602
Cdd:TIGR02169 938 --DPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeyeevlKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
254-328 |
7.00e-04 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.79 E-value: 7.00e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630610 254 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 328
Cdd:COG4026 132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
213-679 |
7.04e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 7.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 213 LVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKN 290
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 291 TQSNEDLKQEKSELEEKlrvlVTEKAGMQLNLEELQKKLEMTELLLQQfssrceapdanqqlqqameERAQLEAH--LGQ 368
Cdd:pfam05483 163 TCARSAEKTKKYEYERE----ETRQVYMDLNNNIEKMILAFEELRVQA-------------------ENARLEMHfkLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 369 VMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELEtslaelrnqmaeppppEPPAGPSEV 448
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE----------------EKTKLQDEN 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 449 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqEERLLELERAAELWGEQAEARrqiLETMQNDRTTISRALSQ 528
Cdd:pfam05483 284 LKELIEKKDHLTKELEDIKMSLQRSMSTQKAL-------EEDLQIATKTICQLTEEKEAQ---MEELNKAKAAHSFVVTE 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 529 NRELKEQLAELqsgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEkLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 608
Cdd:pfam05483 354 FEATTCSLEEL------LRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILAEDEKLLDEKKQ 426
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630610 609 YVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLM 679
Cdd:pfam05483 427 FEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-879 |
9.02e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 235 EGESEDlASRLQYSRRRVGELEraLSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTE 314
Cdd:TIGR02169 204 RREREK-AERYQALLKEKREYE--GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 315 KAGMQLNlEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVrqlqmerdkyaENLKGESAMW 394
Cdd:TIGR02169 281 IKDLGEE-EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI-----------EELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 395 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRnqmaeppppeppagpseveqqlqAEAEHLRKELEGLAgqlqaqv 474
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR-----------------------DELKDYREKLEKLK------- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 475 qdneglSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEIt 554
Cdd:TIGR02169 399 ------REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL- 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 555 SALQSEQhvkRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEvlHNQLLLQTQLV 634
Cdd:TIGR02169 472 YDLKEEY---DRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE--RYATAIEVAAG 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 635 DQLQQQEAQGKAVAEMARQELQEtqERLEAAT----QQNQQLRAQLSLMAHPG--------------------------- 683
Cdd:TIGR02169 547 NRLNNVVVEDDAVAKEAIELLKR--RKAGRATflplNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtl 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 684 --------------------EGDGLDREEE-----EDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFF----------- 727
Cdd:TIGR02169 625 vvedieaarrlmgkyrmvtlEGELFEKSGAmtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLqselrrienrl 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 728 NSAVASAEEEQARLR------GQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHR------ALQGAMEKL 795
Cdd:TIGR02169 705 DELSQELSDASRKIGeiekeiEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEleedlhKLEEALNDL 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 796 -----QSRFMELMQEKADLKE-------RVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKE 863
Cdd:TIGR02169 785 earlsHSRIPEIQAELSKLEEevsrieaRLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
730
....*....|....*.
gi 1955630610 864 EMKVKLLELQELVLRL 879
Cdd:TIGR02169 865 ELEEELEELEAALRDL 880
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
215-366 |
9.92e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 215 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL----SAVSTQQKKADRYNKEL-----TKERDALRL 285
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIkrleLEIEEVEARIKKYEEQLgnvrnNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 286 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcEAPDANQQLQQAMEERAQLEAH 365
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-----ELAELEAELEELEAEREELAAK 171
|
.
gi 1955630610 366 L 366
Cdd:COG1579 172 I 172
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
215-591 |
1.17e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 215 SEKAELQTALAHTQHAARQKEGE----SEDLASRLQYSRRRVGELERALSAvstqQKKADRYNKELTKERDALRL----- 285
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEEDKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAkkkae 1441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 286 ------ELYKNTQSNEDLKQEKSELEEKLRV-LVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEE 358
Cdd:PTZ00121 1442 eakkadEAKKKAEEAKKAEEAKKKAEEAKKAdEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 359 RAQLEAHLGQVMESVRQL-QMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQEL----ETSLAELRNQM 433
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAkKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeEARIEEVMKLY 1601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 434 AEPPPPEPPAGPSEVEQQLQAE-------------------------AEHLRKELEGLAGQLQAQVQDNEGLSRLNREQE 488
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEelkkaeeekkkveqlkkkeaeekkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 489 ERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSE------QH 562
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekkkiAH 1761
|
410 420 430
....*....|....*....|....*....|
gi 1955630610 563 VKRELGKKLGEL-QEKLSELKETVELKSQE 591
Cdd:PTZ00121 1762 LKKEEEKKAEEIrKEKEAVIEEELDEEDEK 1791
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
294-484 |
1.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 294 NEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-------------EMTELLLQQFSsrceapDANQQLQQAMEERA 360
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALeefrqknglvdlsEEAKLLLQQLS------ELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 361 QLEAHLGQVMesvRQLQMERDKYAENLK-GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPP 439
Cdd:COG3206 237 EAEARLAALR---AQLGSGPDALPELLQsPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1955630610 440 EPPAGPSEVeQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 484
Cdd:COG3206 314 ILASLEAEL-EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
545-686 |
1.44e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 42.44 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 545 KLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLghLQQYVAAYQQL-TSEKEVl 623
Cdd:COG1193 508 LLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEIL--EKAREEAEEILrEARKEA- 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630610 624 hnqlllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGD 686
Cdd:COG1193 585 -------EELIRELREAQAEEEELKE-ARKKLEELKQELEEKLEKPKKKAKPAKPPEELKVGD 639
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
395-608 |
1.68e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 395 RQRMQQMSEQVHTLREEKEcSMSRVQELETSLAELRNQMAEPPPPEPPAGPseveQQLQAEAEHLRKELEGLAGQL-QAQ 473
Cdd:COG4913 241 HEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRL----ELLEAELEELRAELARLEAELeRLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 474 VQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALsqnRELKEQLAELQSGFVKLTNENMEI 553
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1955630610 554 TSALQSEQHvkrELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 608
Cdd:COG4913 393 LEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
275-686 |
2.20e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 275 ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVT--EKAGMQLNL----EELQKKLEMTELLLQQFSSRCEApdA 348
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLvqtaLRQQEKIERYQADLEELEERLEE--Q 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 349 NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQMSEQVHTLREEKECSMSR---VQELETS 425
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD----VQQTRAIQYQQAVQALERAKQLCGLPdltADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 426 LAELRNQmaeppPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQLQAQVQDNEGLSRLNREQEERLLEleraae 499
Cdd:PRK04863 444 LEEFQAK-----EQEATEELLSLEQKLSvAQAAHSQFEqayqlVRKIAGEVSRSEAWDVARELLRRLREQRHLA------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 500 lwgEQAEARRQILETMQndrttisRALSQNRELKEQLAElqsgFVKLTNENMEITSALQSEQhvkRELGKKLGELQEKLS 579
Cdd:PRK04863 513 ---EQLQQLRMRLSELE-------QRLRQQQRAERLLAE----FCKRLGKNLDDEDELEQLQ---EELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 580 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlQTQLVDQLQQQeaqgkavaeMARQELQETQ 659
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFE-DSQDVTEYMQQ---------LLERERELTV 645
|
410 420
....*....|....*....|....*..
gi 1955630610 660 ERLEAATQQnQQLRAQLSLMAHPGEGD 686
Cdd:PRK04863 646 ERDELAARK-QALDEEIERLSQPGGSE 671
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
351-675 |
2.44e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 351 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELR 430
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 431 NQMAEPPPPEPPAGP------------SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGL-SRLNREQEERLLELERA 497
Cdd:pfam07888 115 EEKDALLAQRAAHEArireleediktlTQRVLERETELERMKERAKKAGAQRKEEEAERKQLqAKLQQTEEELRSLSKEF 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 498 AELWGEQAEARRQILE------TMQNDRTTISRALSQNRELKEQLAELQSGF------VKLTNENMEITSAL----QSEQ 561
Cdd:pfam07888 195 QELRNSLAQRDTQVLQlqdtitTLTQKLTTAHRKEAENEALLEELRSLQERLnaserkVEGLGEELSSMAAQrdrtQAEL 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 562 HVKR-ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLtseKEVLHNQLLLQTQLVDQLQQQ 640
Cdd:pfam07888 275 HQARlQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRL---EERLQEERMEREKLEVELGRE 351
|
330 340 350
....*....|....*....|....*....|....*
gi 1955630610 641 EAQGKAVAEMARQELQETQERLEAATQQNQQLRAQ 675
Cdd:pfam07888 352 KDCNRVQLSESRRELQELKASLRVAQKEKEQLQAE 386
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
286-665 |
3.16e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 286 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQlnlEELQKKlemTELLLQQFSSRCEAPDANQQLQQAMEEraqLEAH 365
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAE---TELCAEAEEMRARLAARKQELEEILHE---LESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 366 LGQVMESVRQLQMERDKYAENLKGesamWRQRMQQMSEQVHTLREEKECSMSRVQELE--TSLAELRNQMAEPPPPEPPA 443
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQD----LEEQLDEEEAARQKLQLEKVTTEAKIKKLEedILLLEDQNSKLSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 444 GPSEVEQQLqAEAEHLRKELEGLAGQLQAQVQDNEGlsRLNREQEERLLELERAAELWGEQAEARRQILEtmqndrttis 523
Cdd:pfam01576 160 RISEFTSNL-AEEEEKAKSLSKLKNKHEAMISDLEE--RLKKEEKGRQELEKAKRKLEGESTDLQEQIAE---------- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 524 ralsqnreLKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVEL-KSQEAQSLQQQRD-- 600
Cdd:pfam01576 227 --------LQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeRAARNKAEKQRRDlg 298
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630610 601 -------QYLGHLQQYVAAYQQLTS--EKEVLHnqllLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAA 665
Cdd:pfam01576 299 eelealkTELEDTLDTTAAQQELRSkrEQEVTE----LKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQA 368
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
200-601 |
3.35e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 200 REQLQVHIQTIGILVSEKAELQTALAHTQHAArqkegesEDLASRLQYSRRRVGELERALSAVS----------TQQKKA 269
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-------VEMARELAELNEAESDLEQDYQAASdhlnlvqtalRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 270 DRYNKELtkerDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTEL----------LLQQF 339
Cdd:PRK04863 351 ERYQADL----EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTraiqyqqavqALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 340 SSRCEAPDANqqLQQAMEERAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQRMQQMSEQVhtlreEKECSMSRV 419
Cdd:PRK04863 427 KQLCGLPDLT--ADNAEDWLEEFQAKEQEATEELLSLE-QKLSVAQAAHSQFEQAYQLVRKIAGEV-----SRSEAWDVA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 420 QELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGlagQLQAQVQDNEGLSRLNREQEERLLELERAAE 499
Cdd:PRK04863 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK---RLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 500 LWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvkrelgkklgELQEKLS 579
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ--------------QLLERER 641
|
410 420
....*....|....*....|..
gi 1955630610 580 ELKETVELKSQEAQSLQQQRDQ 601
Cdd:PRK04863 642 ELTVERDELAARKQALDEEIER 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
239-597 |
3.37e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 239 EDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLEL--YKNTQS--------NEDLKQEKSELEEKL 308
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkeLEELKEeieelekeLESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 309 RVLVTEKAGMQLNLEELQKKLEMTElllqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK 388
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELK-----------------ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 389 GESAMWrQRMQQMSEQVHTLREEKECSMSRVQELETSLAE------LRNQMAEPPPPEPPAGPSEVEQQLQaEAEHLRKE 462
Cdd:PRK03918 325 GIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELyeeakaKKEELERLKKRLTGLTPEKLEKELE-ELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 463 LEGLAGQLQAQvqdnegLSRLNREQEERLLELERAAELWGEQAEARRQI-----LETMQNDRTTISRALSQNRELKEQLA 537
Cdd:PRK03918 403 IEEEISKITAR------IGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630610 538 ELQSGFVKLtnenmEITSALQSEQHVKRELGKKLGELQEKLSEL-KETVELKSQEAQSLQQ 597
Cdd:PRK03918 477 KLRKELREL-----EKVLKKESELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEKLKE 532
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
295-676 |
3.62e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 295 EDLKQEKSELEEKLrvlvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 374
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 375 QLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREEKecSMSRVQELETSLAELrnQMAEPPPPEPPAGPSEVEQQLQA 454
Cdd:PRK04863 862 QQRSQLEQAKEGL--------SALNRLLPRLNLLADET--LADRVEEIREQLDEA--EEAKRFVQQHGNALAQLEPIVSV 929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 455 eaehLRKELEGLAgQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQND--RTTISRALSQNREL 532
Cdd:PRK04863 930 ----LQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEklRQRLEQAEQERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 533 KEQLAELQSGFvkltNENMEITSALQSEQHVKRELgkkLGELQEKLSELkeTVELKSQEAQSLQQQRDQylghlqqyvaa 612
Cdd:PRK04863 1005 REQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRDE----------- 1064
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630610 613 yqqltsekevLHNQLLLQTQLVDQLQQQEAQGKAvaemarqELQETQERLEAATQQNQQLRAQL 676
Cdd:PRK04863 1065 ----------LHARLSANRSRRNQLEKQLTFCEA-------EMDNLTKKLRKLERDYHEMREQV 1111
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
178-674 |
3.67e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 178 ASSANLKDLEEKKECHQKQGALREQLQVHIQtigilvseKAELQTALAHTQhaARQKEGESEDLASRLQYSRRRVGELER 257
Cdd:pfam05483 206 AENARLEMHFKLKEDHEKIQHLEEEYKKEIN--------DKEKQVSLLLIQ--ITEKENKMKDLTFLLEESRDKANQLEE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 258 ALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKagmQLNLEELQKKLEMTELLLQ 337
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELNKAKAAHSFVVT 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 338 QF-SSRCEAPDANQQLQQAMEERAqleahlgqvmESVRQLQMERDKYAENLkgesamwrqrmqqmsEQVHTLREEKECSM 416
Cdd:pfam05483 353 EFeATTCSLEELLRTEQQRLEKNE----------DQLKIITMELQKKSSEL---------------EEMTKFKNNKEVEL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 417 srvQELETSLAELRNQMAEppppeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqEERLLELER 496
Cdd:pfam05483 408 ---EELKKILAEDEKLLDE-------------KKQFEKIAEELKGKEQELIFLLQAREKEIHDL-------EIQLTAIKT 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 497 AAELWGEQAEARRQILETMQNDRTTIS----RALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQhvkrELGKKLG 572
Cdd:pfam05483 465 SEEHYLKEVEDLKTELEKEKLKNIELTahcdKLLLENKELTQEASDMT---LELKKHQEDIINCKKQEE----RMLKQIE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 573 ELQEKLSELKETVELKSQEaqsLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQ-EAQGKAVAEMA 651
Cdd:pfam05483 538 NLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQiENKNKNIEELH 614
|
490 500
....*....|....*....|...
gi 1955630610 652 rqelQETQERLEAATQQNQQLRA 674
Cdd:pfam05483 615 ----QENKALKKKGSAENKQLNA 633
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
176-405 |
4.02e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 176 GPASSANLKDLEEKKECHQKQ-GALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGE 254
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEiAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 255 LERALSAvstQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEEL-QKKLEMTE 333
Cdd:COG4942 95 LRAELEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELaALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630610 334 LLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQV 405
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
589-835 |
4.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 589 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 668
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 669 NQQLRAQLSLMAhpgegdgldREEEEDEEEEEEEAVAVPQPmpsiPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQ 748
Cdd:COG4942 99 LEAQKEELAELL---------RALYRLGRQPPLALLLSPED----FLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 749 RVRCRRLAHLLASAQKEPEAAapapgtggdsvcgetHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETD 828
Cdd:COG4942 166 RAELEAERAELEALLAELEEE---------------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....*..
gi 1955630610 829 TIGEYIA 835
Cdd:COG4942 231 RLEAEAA 237
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
569-677 |
5.69e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 569 KKLGELQEKLSELKETVELKSQEAQSLQQQrdqyLGHLQQYVAAYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVA 648
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDS----VANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQEL 125
|
90 100
....*....|....*....|....*....
gi 1955630610 649 EMARQELQETQERLEAATQQNQQLRAQLS 677
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLA 154
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
384-622 |
6.28e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 384 AENLKGESAMWRQRMQQMSEQVHTLREekecsmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKEL 463
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 464 EglagQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQndrttisRALSQN---RELKEQLAELQ 540
Cdd:COG3206 236 A----EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSA-------RYTPNHpdvIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 541 SGFVKLTNENM-EITSALQSEQHVKRELGKKLGELQEKLSELKEtvelKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSE 619
Cdd:COG3206 305 AQLQQEAQRILaSLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
...
gi 1955630610 620 KEV 622
Cdd:COG3206 381 EAL 383
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
183-589 |
6.31e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 183 LKDLEEKKEchqKQGALREQLQVHIQTIGILVSEKAELQTALAHT----QHAARQKEGESEDLASRLQYSRRRVGELERA 258
Cdd:PRK03918 330 IKELEEKEE---RLEELKKKLKELEKRLEELEERHELYEEAKAKKeeleRLKKRLTGLTPEKLEKELEELEKAKEEIEEE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 259 LSAV-----STQQKKADRY----------------NKELTKERDALRLELYknTQSNEDLKQEKSELEEKLRVLVTEKAG 317
Cdd:PRK03918 407 ISKItarigELKKEIKELKkaieelkkakgkcpvcGRELTEEHRKELLEEY--TAELKRIEKELKEIEEKERKLRKELRE 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 318 MQLNLEELQKKLEMTELLLQQFSSRCEAPDAN-QQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEnLKGESAMWRQ 396
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-LKKKLAELEK 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 397 RMQQMSEQVHTL-REEKECSMSRVQELETSLAELRnqmaepPPPEPPAGPSEVEQQLQAEAEHLRKELEGLagqlqaqVQ 475
Cdd:PRK03918 564 KLDELEEELAELlKELEELGFESVEELEERLKELE------PFYNEYLELKDAEKELEREEKELKKLEEEL-------DK 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 476 DNEGLSRLNREQEERLLELERAAELWGEqaEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITS 555
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
410 420 430
....*....|....*....|....*....|....
gi 1955630610 556 ALQSEQHVKRELgKKLGELQEKLSELKETVELKS 589
Cdd:PRK03918 709 AKKELEKLEKAL-ERVEELREKVKKYKALLKERA 741
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
466-680 |
6.50e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 466 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILET-MQNDRTTISRALSQNRELKEQLAELQSGFV 544
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESrVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 545 KLTNEnmEITSALQSEQHVKR---------ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQ 615
Cdd:pfam07888 112 ELSEE--KDALLAQRAAHEARireleedikTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630610 616 LTSEKEVLHNQLLLQTQLVDQLQQ----------QEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMA 680
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDtittltqkltTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMA 264
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
182-661 |
7.94e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 182 NLKDLEEKKECHQKQ-GALREQLQVHIQTIGILVSEKAELQTALAhtqhAARQKEGESEDLASRLQYSRRRVGELERALS 260
Cdd:PRK03918 180 RLEKFIKRTENIEELiKEKEKELEEVLREINEISSELPELREELE----KLEKEVKELEELKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 261 AVSTQQKKADRYNKELTKERDALR--------LELYKNTQSN-----EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK 327
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELEekvkelkeLKEKAEEYIKlsefyEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 328 KLEMTELLLQQFSSRceapdanQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYA-ENLKGESAMWRQRMQQMSEQVH 406
Cdd:PRK03918 336 KEERLEELKKKLKEL-------EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 407 TLREEKECSMSRVQELETSLAELRN--------------QMAEPPPPEPPAGPSEVEQQLQaEAEHLRKELEGLAGQLQA 472
Cdd:PRK03918 409 KITARIGELKKEIKELKKAIEELKKakgkcpvcgrelteEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRELEK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 473 QVQDNEGLSRLNREQeerlleleraaelwgEQAEARRQILETMqnDRTTISRALSQNRELKEQLAELqSGFVKLTNENME 552
Cdd:PRK03918 488 VLKKESELIKLKELA---------------EQLKELEEKLKKY--NLEELEKKAEEYEKLKEKLIKL-KGEIKSLKKELE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 553 ITSALQSEqhvKRELGKKLGELQEKLSELKEtvELKSQEAQSLQQQrDQYLGHLQQYVAAYQQLT---SEKEVLHNQLLL 629
Cdd:PRK03918 550 KLEELKKK---LAELEKKLDELEEELAELLK--ELEELGFESVEEL-EERLKELEPFYNEYLELKdaeKELEREEKELKK 623
|
490 500 510
....*....|....*....|....*....|..
gi 1955630610 630 QTQLVDQLQQQEAQGKAVAEMARQELQETQER 661
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
214-464 |
8.31e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 214 VSEKAELQTALAHTQHAARQkegESEDLASRLQySRRRVGELERALSAVSTQQKK--ADRYNKELTKERDALRLELYKNT 291
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQ---EKEEKAREVE-RRRKLEEAEKARQAEMDRQAAiyAEQERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 292 QSNEDLKQEKSELE-------EKL---------RVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQA 355
Cdd:pfam17380 360 RELERIRQEEIAMEisrmrelERLqmerqqkneRVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 356 MEERAQLEAHLGQVMESVRQLQME--RDKYAENLKGESAMWR-QRMQQMSEQVHTLREEKECSMSRVQELEtslAELRNQ 432
Cdd:pfam17380 440 LEEERAREMERVRLEEQERQQQVErlRQQEEERKRKKLELEKeKRDRKRAEEQRRKILEKELEERKQAMIE---EERKRK 516
|
250 260 270
....*....|....*....|....*....|..
gi 1955630610 433 MAEPPPPEPPAGPSEVEQQLQAEAEHlRKELE 464
Cdd:pfam17380 517 LLEKEMEERQKAIYEEERRREAEEER-RKQQE 547
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
185-619 |
9.02e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.89 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 185 DLEEKKECHQKQGALREQLQVHIQTIGilvSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRrrvgeLERALSAVST 264
Cdd:PLN02939 43 SSQQKKKRGKNIAPKQRSSNSKLQSNT---DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQR-----DEAIAAIDNE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 265 QQKKADRYNKELTKERDALrLELYKNTQSNE-DLKQEKSELEEKLRVLVTEKagmqlnlEELQKKLEMTELLLQQfssrc 343
Cdd:PLN02939 115 QQTNSKDGEQLSDFQLEDL-VGMIQNAEKNIlLLNQARLQALEDLEKILTEK-------EALQGKINILEMRLSE----- 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 344 eapdANQQLQQAMEERAQLEAhlgqvmesvrqLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELE 423
Cdd:PLN02939 182 ----TDARIKLAAQEKIHVEI-----------LEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLK 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 424 TSLAELrnqmaeppppeppagpseveqqlqAEAEHLRKELEGLAGQLQAQVQDNEglSRLNREQEERLLELERAAELWGE 503
Cdd:PLN02939 247 AELIEV------------------------AETEERVFKLEKERSLLDASLRELE--SKFIVAQEDVSKLSPLQYDCWWE 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 504 QAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltnenmeitsalqSEQHVKRELGKKLGELQEKLSELKE 583
Cdd:PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASL---------------KEANVSKFSSYKVELLQQKLKLLEE 365
|
410 420 430
....*....|....*....|....*....|....*.
gi 1955630610 584 TVELKSQEAQSlqqqrdqylghlqqYVAAYQQLTSE 619
Cdd:PLN02939 366 RLQASDHEIHS--------------YIQLYQESIKE 387
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
446-668 |
9.91e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 446 SEVEQQLQAEAEHLRKELEGLAGQL-QAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISR 524
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELaALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630610 525 ALSQNRELKEQLAELQSgfVKLTNENMEITSALQSEQHVKRE--LGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQY 602
Cdd:COG4942 99 LEAQKEELAELLRALYR--LGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630610 603 LGHLQQYVAAYQQLTSEKEvlhNQLLLQTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQ 668
Cdd:COG4942 177 EALLAELEEERAALEALKA---ERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAA 238
|
|
| |
