|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
218-397 |
1.56e-31 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 128.64 E-value: 1.56e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 218 QLKESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDA--PAVS 295
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEqpPAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 296 SEVE------LQDLRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRL------------- 356
Cdd:pfam15070 81 SEEEqrlqeeAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILedmqsdratisra 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1904926754 357 --------QQLAEPQSDLEELKHEN---KSALQLEQQVK-ELQEKLGQVMETL 397
Cdd:pfam15070 161 lsqnrelkEQLAELQNGFVKLTNENmelTSALQSEQHVKkELAKKLGQLQEEL 213
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
558-603 |
1.59e-22 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 90.52 E-value: 1.59e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1904926754 558 SSQDNPTAQPVVQLLGEMQDHQEHPGLGSNCCVPCFCWAWLPRRRR 603
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-440 |
8.44e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 8.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKD 157
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 158 LAGRLQRSSQRIGELEWSLCAVAATQkkkpdgfssrskALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQI 237
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEEL------------EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 238 KGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapAVSSEVELQDLRKELERVAGELQAQ 317
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-------LEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 318 VENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELK--HENKSALQLEQQVKELQEKLGQVME 395
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEadYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1904926754 396 TLTSAEKEPEAAVPASGTGGESSGLMDLLEEKADLREHVEKLELG 440
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
78-439 |
2.37e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANnEKQKAERELE-----GQIQRLNTEKKKLNTDLYHMkhslryfE 152
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELElallvLRLEELREELEELQEELKEA-------E 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 153 EESKDLAGRLQRSSQRIGELEwslcavaatqkkkpDGFSSRSKALLKRQ--LEQSIREQILLKGHVTQLKESLKEVQLER 230
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELR--------------LEVSELEEEIEELQkeLYALANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 231 DQYAEQIkgerAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapavsSEVELQDLRKELERV 310
Cdd:TIGR02168 319 EELEAQL----EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE----------LESRLEELEEQLETL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 311 AGEL-----QAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSAL-QLEQQVK 384
Cdd:TIGR02168 385 RSKVaqlelQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELeRLEEALE 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1904926754 385 ELQEKLGQVMETLTSAEKEPEAAvpasgtGGESSGLMDLLEEKADLREHVEKLEL 439
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQL------QARLDSLERLQENLEGFSEGVKALLK 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
92-438 |
2.94e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 92 IKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQRSSQRIGE 171
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 172 LEWSLcAVAATQKKKPDGFSSRSKAL----------LKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIKGER 241
Cdd:TIGR02168 759 LEAEI-EELEERLEEAEEELAEAEAEieeleaqieqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 242 AQW---QQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAeplppdapavSSEVELQDLRKELERVAGELQaqv 318
Cdd:TIGR02168 838 RRLedlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA----------SLEEALALLRSELEELSEELR--- 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 319 ENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEE--LKHENK---SALQLEQQVKELQEKLGQV 393
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeaEALENKiedDEEEARRRLKRLENKIKEL 984
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1904926754 394 METLTSAEKEPEAavpasgtggESSGLMDLLEEKADLREHVEKLE 438
Cdd:TIGR02168 985 GPVNLAAIEEYEE---------LKERYDFLTAQKEDLTEAKETLE 1020
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
84-438 |
2.97e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 84 KISRLNDTIKS---LKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTdlyhMKHSLRYFEEESKDLAG 160
Cdd:PRK03918 177 RIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 161 RLQRSSQRIGELEWSLcavaATQKKKPDGFSSRSKALlkRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIKGE 240
Cdd:PRK03918 253 SKRKLEEKIRELEERI----EELKKEIEELEEKVKEL--KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 241 RAQWQQRmRKMSQEVCTLKEEKKHDTHRVEELERS-------------LSRLKNQMAEPLPPDAPAVSSEV-----ELQD 302
Cdd:PRK03918 327 EERIKEL-EEKEERLEELKKKLKELEKRLEELEERhelyeeakakkeeLERLKKRLTGLTPEKLEKELEELekakeEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 303 LRKELERVAGELQAQV-ENNQCISLLNR--------GQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHEN 373
Cdd:PRK03918 406 EISKITARIGELKKEIkELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1904926754 374 KSALQLE----------QQVKELQEKLGQV-METLTSAEKEPEAAVPAS-GTGGESSGLMDLLEEKADLREHVEKLE 438
Cdd:PRK03918 486 EKVLKKEseliklkelaEQLKELEEKLKKYnLEELEKKAEEYEKLKEKLiKLKGEIKSLKKELEKLEELKKKLAELE 562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-403 |
2.51e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 92 IKSLKQQKKQ----VEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLyhmkhslRYFEEESKDLAGRLQRSSQ 167
Cdd:COG1196 202 LEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL-------EELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 168 RIGELEWslcAVAATQKKKpdgfssrskALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIkgerAQWQQR 247
Cdd:COG1196 275 ELEELEL---ELEEAQAEE---------YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL----EELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 248 MRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapavssevELQDLRKELERVAGELQAQVENNQCISLL 327
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE-------------AEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1904926754 328 NRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSAEKE 403
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
73-461 |
1.95e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 73 EQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHmkhsLRYFE 152
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD----YLKLN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 153 EESKDLAGRLQRSSQRIGELEwslcavAATQKKKPDGFSSRSKalLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQ 232
Cdd:pfam02463 236 EERIDLLQELLRDEQEEIESS------KQEIEKEEEKLAQVLK--ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 233 YAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDAPAVSSEVELQDLRKELErvAG 312
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES--ER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 313 ELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKhENKSALQLEQQVKELQEKLGQ 392
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ-GKLTEEKEELEKQELKLLKDE 464
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1904926754 393 VMETLTSAEKEPEAAVPASGTGGESSGLMDLLEEKADLREHVE--KLELGFIQYRRERCHQKVHRLLTEPG 461
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSglKVLLALIKDGVGGRIISAHGRLGDLG 535
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
71-173 |
1.52e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 41.18 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 71 CQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNtdlyhmkhslRY 150
Cdd:smart00435 265 CNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK----------KE 334
|
90 100
....*....|....*....|...
gi 1904926754 151 FEEESKDLAgRLQRSSQRIGELE 173
Cdd:smart00435 335 KKKEEKKKK-QIERLEERIEKLE 356
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
72-320 |
1.62e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 72 QEQAAVLNSRSIKISRLNDTIKSLKQQKKQ-------VEHQLEEEKKANNEKQKAE--RELEGQIQRLNTEKKKLNTDLY 142
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKlrkelreLEKVLKKESELIKLKELAEqlKELEEKLKKYNLEELEKKAEEY 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 143 H-MKHSLRYFEEESKDLAGRLQRSSQRIGELEWSLCAVAATQKKKPD--------GFSSRSKALLK-RQLEQSIREQILL 212
Cdd:PRK03918 528 EkLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEllkeleelGFESVEELEERlKELEPFYNEYLEL 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 213 KGHVTQLKESLKEVQLERDQyAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHR-----VEELERSLSRLKNQMAepl 287
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEE-LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEelreeYLELSRELAGLRAELE--- 683
|
250 260 270
....*....|....*....|....*....|...
gi 1904926754 288 ppdapavssevELQDLRKELERVAGELQAQVEN 320
Cdd:PRK03918 684 -----------ELEKRREEIKKTLEKLKEELEE 705
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
218-397 |
1.56e-31 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 128.64 E-value: 1.56e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 218 QLKESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDA--PAVS 295
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEqpPAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 296 SEVE------LQDLRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRL------------- 356
Cdd:pfam15070 81 SEEEqrlqeeAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILedmqsdratisra 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1904926754 357 --------QQLAEPQSDLEELKHEN---KSALQLEQQVK-ELQEKLGQVMETL 397
Cdd:pfam15070 161 lsqnrelkEQLAELQNGFVKLTNENmelTSALQSEQHVKkELAKKLGQLQEEL 213
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
558-603 |
1.59e-22 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 90.52 E-value: 1.59e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1904926754 558 SSQDNPTAQPVVQLLGEMQDHQEHPGLGSNCCVPCFCWAWLPRRRR 603
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-440 |
8.44e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 8.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKD 157
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 158 LAGRLQRSSQRIGELEWSLCAVAATQkkkpdgfssrskALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQI 237
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEEL------------EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 238 KGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapAVSSEVELQDLRKELERVAGELQAQ 317
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE-------LEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 318 VENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELK--HENKSALQLEQQVKELQEKLGQVME 395
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEadYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1904926754 396 TLTSAEKEPEAAVPASGTGGESSGLMDLLEEKADLREHVEKLELG 440
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
64-285 |
3.29e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.09 E-value: 3.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 64 LHARQSPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYH 143
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 144 MKHSLryfEEESKDLAGRLqRSSQRIGELEWSLCAVAAtqkKKPDGFSSRSKAL--LKRQLEQSIREQILLKGHVTQLKE 221
Cdd:COG4942 95 LRAEL---EAQKEELAELL-RALYRLGRQPPLALLLSP---EDFLDAVRRLQYLkyLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1904926754 222 SLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAE 285
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
78-439 |
2.37e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANnEKQKAERELE-----GQIQRLNTEKKKLNTDLYHMkhslryfE 152
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELElallvLRLEELREELEELQEELKEA-------E 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 153 EESKDLAGRLQRSSQRIGELEwslcavaatqkkkpDGFSSRSKALLKRQ--LEQSIREQILLKGHVTQLKESLKEVQLER 230
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELR--------------LEVSELEEEIEELQkeLYALANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 231 DQYAEQIkgerAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapavsSEVELQDLRKELERV 310
Cdd:TIGR02168 319 EELEAQL----EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE----------LESRLEELEEQLETL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 311 AGEL-----QAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSAL-QLEQQVK 384
Cdd:TIGR02168 385 RSKVaqlelQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELeRLEEALE 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1904926754 385 ELQEKLGQVMETLTSAEKEPEAAvpasgtGGESSGLMDLLEEKADLREHVEKLEL 439
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQL------QARLDSLERLQENLEGFSEGVKALLK 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
92-438 |
2.94e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 92 IKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQRSSQRIGE 171
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 172 LEWSLcAVAATQKKKPDGFSSRSKAL----------LKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIKGER 241
Cdd:TIGR02168 759 LEAEI-EELEERLEEAEEELAEAEAEieeleaqieqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 242 AQW---QQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAeplppdapavSSEVELQDLRKELERVAGELQaqv 318
Cdd:TIGR02168 838 RRLedlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA----------SLEEALALLRSELEELSEELR--- 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 319 ENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEE--LKHENK---SALQLEQQVKELQEKLGQV 393
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeaEALENKiedDEEEARRRLKRLENKIKEL 984
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1904926754 394 METLTSAEKEPEAavpasgtggESSGLMDLLEEKADLREHVEKLE 438
Cdd:TIGR02168 985 GPVNLAAIEEYEE---------LKERYDFLTAQKEDLTEAKETLE 1020
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-407 |
2.17e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 84 KISRLNDTIKSLKQQKKQVE---HQLEEEKKANNEKQKAE-RELEGQIQRLNTEKKKLNTDLYHMkhslryfEEESKDLA 159
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRrerEKAERYQALLKEKREYEgYELLKEKEALERQKEAIERQLASL-------EEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 160 GRLQRSSQRIGELEWSLCAVAATQKKKPDGFSSRSK---ALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQY--- 233
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKekiGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLlae 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 234 AEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKnqmaeplppdapavsseVELQDLRKELERVAGE 313
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR-----------------DELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 314 LQAqvennqcislLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQ-----------LEQQ 382
Cdd:TIGR02169 401 INE----------LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWkleqlaadlskYEQE 470
|
330 340
....*....|....*....|....*
gi 1904926754 383 VKELQEKLGQVMETLTSAEKEPEAA 407
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-438 |
6.73e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 6.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 84 KISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQ 163
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 164 RSSQRIGELEWSLCAVAAtQKKKPDGFSSRSKALLKRQLEQSIREQIL-LKGHVTQLKESLKEVQLERdQYAEQikgERA 242
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEE-ALNDLEARLSHSRIPEIQAELSKLEEEVSrIEARLREIEQKLNRLTLEK-EYLEK---EIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 243 QWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapavsSEVELQDLRKELERVAGELQAQVENNQ 322
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD----------LESRLGDLKKERDELEAQLRELERKIE 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 323 CIsllnrgqKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSAEK 402
Cdd:TIGR02169 907 EL-------EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQ 979
|
330 340 350
....*....|....*....|....*....|....*.
gi 1904926754 403 EPEAAVPASGTGGESsgLMDLLEEKADLREHVEKLE 438
Cdd:TIGR02169 980 EYEEVLKRLDELKEK--RAKLEEERKAILERIEEYE 1013
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
84-438 |
2.97e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 84 KISRLNDTIKS---LKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTdlyhMKHSLRYFEEESKDLAG 160
Cdd:PRK03918 177 RIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 161 RLQRSSQRIGELEWSLcavaATQKKKPDGFSSRSKALlkRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIKGE 240
Cdd:PRK03918 253 SKRKLEEKIRELEERI----EELKKEIEELEEKVKEL--KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 241 RAQWQQRmRKMSQEVCTLKEEKKHDTHRVEELERS-------------LSRLKNQMAEPLPPDAPAVSSEV-----ELQD 302
Cdd:PRK03918 327 EERIKEL-EEKEERLEELKKKLKELEKRLEELEERhelyeeakakkeeLERLKKRLTGLTPEKLEKELEELekakeEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 303 LRKELERVAGELQAQV-ENNQCISLLNR--------GQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHEN 373
Cdd:PRK03918 406 EISKITARIGELKKEIkELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1904926754 374 KSALQLE----------QQVKELQEKLGQV-METLTSAEKEPEAAVPAS-GTGGESSGLMDLLEEKADLREHVEKLE 438
Cdd:PRK03918 486 EKVLKKEseliklkelaEQLKELEEKLKKYnLEELEKKAEEYEKLKEKLiKLKGEIKSLKKELEKLEELKKKLAELE 562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
72-308 |
3.54e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 72 QEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYF 151
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 152 EEESKDLAGRLQRSSQRIGELEwslcAVAATQKKKPDGFSSRSKALLKRQLEQSIREQILLK--GHVTQLKESLKEVQLE 229
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAE----AELAEAEEELEELAEELLEALRAAAELAAQLEELEEaeEALLERLERLEEELEE 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1904926754 230 RDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDAPAVSSEVELQDLRKELE 308
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
84-309 |
2.32e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 84 KISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQ 163
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 164 RSSQRIGELEWSLCAVAATQKKKPDGFSSRSKALlkRQLEQSIREQIllkghvTQLKESLKEVQlERDQYAEQIKGERAQ 243
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEI--EELEELIEELE------SELEALLNERA-SLEEALALLRSELEE 898
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 244 WQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKN-----------------QMAEPLPPDAPAVSSEVE--LQDLR 304
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVridnlqerlseeysltlEEAEALENKIEDDEEEARrrLKRLE 978
|
....*
gi 1904926754 305 KELER 309
Cdd:TIGR02168 979 NKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-403 |
2.51e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 92 IKSLKQQKKQ----VEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLyhmkhslRYFEEESKDLAGRLQRSSQ 167
Cdd:COG1196 202 LEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL-------EELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 168 RIGELEWslcAVAATQKKKpdgfssrskALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIkgerAQWQQR 247
Cdd:COG1196 275 ELEELEL---ELEEAQAEE---------YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL----EELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 248 MRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEplppdapavssevELQDLRKELERVAGELQAQVENNQCISLL 327
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE-------------AEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1904926754 328 NRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSAEKE 403
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
84-389 |
3.21e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 84 KISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQ 163
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 164 RSSQRIGELEWSLCAVAATQKKKPDGFSSRSKAllKRQLEQSIREqilLKGHVTQLKESLKEVQLErdqyAEQIKGERAQ 243
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ--DSVKELIIKN---LDNTRESLETQLKVLSRS----INKIKQNLEQ 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 244 WQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQM----AEPLPPDAPAVSSEVELQDLRKELERVAGELQAQvE 319
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIekleSEKKEKESKISDLEDELNKDDFELKKENLEKEID-E 565
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1904926754 320 NNQCISLLNRGQKerlreqeerlqEQQERLREREKRLQQLAEPQSDL-EELKHENKSALQLEQQVKELQEK 389
Cdd:TIGR04523 566 KNKEIEELKQTQK-----------SLKKKQEEKQELIDQKEKEKKDLiKEIEEKEKKISSLEKELEKAKKE 625
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
78-405 |
7.45e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLN-----DTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFE 152
Cdd:TIGR04523 290 LNQLKSEISDLNnqkeqDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 153 EESKDLAGRLQRSSQRIGELEWSlcavaatqkkkpdgfssrskallKRQLEQSIREQillKGHVTQLKESLKEVQLERDQ 232
Cdd:TIGR04523 370 NEIEKLKKENQSYKQEIKNLESQ-----------------------INDLESKIQNQ---EKLNQQKDEQIKKLQQEKEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 233 YAEQIKGERAQwqqrMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLppdAPAVSSEVELQDLRKELERVAG 312
Cdd:TIGR04523 424 LEKEIERLKET----IIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS---RSINKIKQNLEQKQKELKSKEK 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 313 ELQAQVENNqciSLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSAlQLEQQVKELQEKLGQ 392
Cdd:TIGR04523 497 ELKKLNEEK---KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE-NLEKEIDEKNKEIEE 572
|
330
....*....|...
gi 1904926754 393 VMETLTSAEKEPE 405
Cdd:TIGR04523 573 LKQTQKSLKKKQE 585
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
74-308 |
7.73e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 7.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 74 QAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEekkannekqkAERELEGqiqrlntekkklntdlYHMKHSLRYFEE 153
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLEEQLPELRKELEE----------AEAALEE----------------FRQKNGLVDLSE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 154 ESKDLAGRLQRSSQRIGELEWSLCAVAATQkkkpdgfssrskALLKRQLEQSIREQILLKGH--VTQLKESLKEVQLERD 231
Cdd:COG3206 213 EAKLLLQQLSELESQLAEARAELAEAEARL------------AALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 232 QYAE----------QIKGERAQWQQRMRKMSQEVC-TLKEEKKHDTHRVEELERSLSRLKNQMAEplppdAPAVssEVEL 300
Cdd:COG3206 281 ELSArytpnhpdviALRAQIAALRAQLQQEAQRILaSLEAELEALQAREASLQAQLAQLEARLAE-----LPEL--EAEL 353
|
....*...
gi 1904926754 301 QDLRKELE 308
Cdd:COG3206 354 RRLEREVE 361
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
64-372 |
7.85e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 7.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 64 LHARQSPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLE--EEKKANN--EKQKAERELEGQIQRLNTEKKKLNt 139
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSslEQEIENVksELKELEARIEELEEDLHKLEEALN- 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 140 DLYHM--KHSLRYFEEESKDLAGRLQRSSQRIGELEwslcavAATQKKKPDGFSSRSK--------ALLKRQLEQSIREQ 209
Cdd:TIGR02169 783 DLEARlsHSRIPEIQAELSKLEEEVSRIEARLREIE------QKLNRLTLEKEYLEKEiqelqeqrIDLKEQIKSIEKEI 856
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 210 ILLKGHVTQLKESLKEVQLERDQYAEQ---IKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAE- 285
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEi 936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 286 --PLPPDAPAVSSEVELQDLRKELERVAGELQAQVE-NNQCISLLNRGQKERLREQEERL--QEQQErlrerekrlqQLA 360
Cdd:TIGR02169 937 edPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPvNMLAIQEYEEVLKRLDELKEKRAklEEERK----------AIL 1006
|
330
....*....|..
gi 1904926754 361 EPQSDLEELKHE 372
Cdd:TIGR02169 1007 ERIEEYEKKKRE 1018
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
68-403 |
9.73e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 9.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 68 QSPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKK-LNTDLyhmKH 146
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdWNKEL---KS 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 147 SLRYFEEESKDLAGRLQRSSQRIGELEWSlcaVAATQKKKPDGFSSRSKalLKRQLEQSIREQILLKGHVTQLKESLKEV 226
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLNEQ---ISQLKKELTNSESENSE--KQRELEEKQNEIEKLKKENQSYKQEIKNL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 227 QLER---DQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAeplppdapavssevELQDL 303
Cdd:TIGR04523 390 ESQIndlESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS--------------VKELI 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 304 RKELERVAGELQAQvennqcISLLNRGQKERLREQEERLqeqqerlrerekrlQQLAEPQSDLEELKHENKsalQLEQQV 383
Cdd:TIGR04523 456 IKNLDNTRESLETQ------LKVLSRSINKIKQNLEQKQ--------------KELKSKEKELKKLNEEKK---ELEEKV 512
|
330 340
....*....|....*....|
gi 1904926754 384 KELQEKLGQVMETLTSAEKE 403
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLESE 532
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
73-246 |
1.52e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 73 EQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAER---ELEGQIQRLNTEKKKLNTDLYHMKHSLR 149
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESrleELEEQLETLRSKVAQLELQIASLNNEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 150 YFEEESKDLAGRLQRSSQRIGELEWSLcavaatqkkkpdgfSSRSKALLKRQLEQSIREQILLKGHVTQLKESLKEVQLE 229
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKL--------------EEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
170
....*....|....*..
gi 1904926754 230 RDQYAEQIKGERAQWQQ 246
Cdd:TIGR02168 470 LEEAEQALDAAERELAQ 486
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
78-405 |
1.81e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQR-------------LNTEKKKLNTDLYHM 144
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkelkekaeeyikLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 145 KHSLRYFEEESKDLAGRLQRSSQRIGELEWSLCAVAATQKKKPDGFSS-----RSKALLKRQLEQSIREQILLKGHVTQL 219
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERhelyeEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 220 KESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKH---------DTHRVEELER---SLSRLKNQMAEpl 287
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgreltEEHRKELLEEytaELKRIEKELKE-- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 288 ppdapavsSEVELQDLRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLE 367
Cdd:PRK03918 471 --------IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
330 340 350
....*....|....*....|....*....|....*...
gi 1904926754 368 ELKHENKSALQLEQQVKELQEKLGQVMETLTSAEKEPE 405
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
73-461 |
1.95e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 73 EQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHmkhsLRYFE 152
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD----YLKLN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 153 EESKDLAGRLQRSSQRIGELEwslcavAATQKKKPDGFSSRSKalLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQ 232
Cdd:pfam02463 236 EERIDLLQELLRDEQEEIESS------KQEIEKEEEKLAQVLK--ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 233 YAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDAPAVSSEVELQDLRKELErvAG 312
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES--ER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 313 ELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKhENKSALQLEQQVKELQEKLGQ 392
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ-GKLTEEKEELEKQELKLLKDE 464
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1904926754 393 VMETLTSAEKEPEAAVPASGTGGESSGLMDLLEEKADLREHVE--KLELGFIQYRRERCHQKVHRLLTEPG 461
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSglKVLLALIKDGVGGRIISAHGRLGDLG 535
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
86-415 |
5.17e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 86 SRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKlntdlyhmkhslryfEEESKDLAGRLQRS 165
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK---------------AEEDKNMALRKAEE 1585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 166 SQRIGELEWSLCAVAATQKKKpdgfsSRSKALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIKgeRAQWQ 245
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKK-----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK--KAEEE 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 246 QRMRKMSQEVCTLKEEKKHDTHRVEELErslsrlKNQMAEPLPPDAPAVSSEVELQDLRKELERVAGELQAQVENNQcis 325
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK--- 1729
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 326 lLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALqLEQQVKELQEKLGQVMETLTSAEKEPE 405
Cdd:PTZ00121 1730 -IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV-IEEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
330
....*....|
gi 1904926754 406 AAVPASGTGG 415
Cdd:PTZ00121 1808 ANIIEGGKEG 1817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
189-439 |
6.48e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 189 GFSSRSKALLKRQLE-QSIREQI-LLKGHVTQLKESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQ---EVCTLKEEKK 263
Cdd:TIGR02168 664 GSAKTNSSILERRREiEELEEKIeELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAlrkDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 264 HDTHRVEELERSLSRLKNQMAEPLPPDAPAVSSEVELQDLRKELERVAGELQAQVENNQCISllnRGQKERLREQEERLQ 343
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL---DELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 344 EQQERLREREKRL-----------QQLAEPQSDLEELKHE----NKSALQLEQQVKELQEKLGQVMETLTSAEKEPEAAv 408
Cdd:TIGR02168 821 NLRERLESLERRIaaterrledleEQIEELSEDIESLAAEieelEELIEELESELEALLNERASLEEALALLRSELEEL- 899
|
250 260 270
....*....|....*....|....*....|.
gi 1904926754 409 pASGTGGESSGLMDLLEEKADLREHVEKLEL 439
Cdd:TIGR02168 900 -SEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
198-297 |
7.09e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 7.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 198 LKRQLEQ-SIREQILLKGHVTQLKESLKEVQLERDQYAEQIKGERAQWQQRmRKMSQEVCTLKEEKKHDTHRVEELERSL 276
Cdd:COG0542 416 LERRLEQlEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAE-KELIEEIQELKEELEQRYGKIPELEKEL 494
|
90 100
....*....|....*....|.
gi 1904926754 277 SRLKNQMAEPLPPDAPAVSSE 297
Cdd:COG0542 495 AELEEELAELAPLLREEVTEE 515
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
83-285 |
8.23e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 83 IKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRL 162
Cdd:TIGR04523 454 LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 163 QRSSQRIGELEwslcavaaTQKKKPDgfSSRSKALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIKGERA 242
Cdd:TIGR04523 534 KEKESKISDLE--------DELNKDD--FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1904926754 243 QWQQRMRKMSQ---EVCTLKEEKKhdthRVEELERSLSRLKNQMAE 285
Cdd:TIGR04523 604 EIEEKEKKISSlekELEKAKKENE----KLSSIIKNIKSKKNKLKQ 645
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
71-173 |
1.52e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 41.18 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 71 CQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNtdlyhmkhslRY 150
Cdd:smart00435 265 CNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK----------KE 334
|
90 100
....*....|....*....|...
gi 1904926754 151 FEEESKDLAgRLQRSSQRIGELE 173
Cdd:smart00435 335 KKKEEKKKK-QIERLEERIEKLE 356
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
72-320 |
1.62e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 72 QEQAAVLNSRSIKISRLNDTIKSLKQQKKQ-------VEHQLEEEKKANNEKQKAE--RELEGQIQRLNTEKKKLNTDLY 142
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKlrkelreLEKVLKKESELIKLKELAEqlKELEEKLKKYNLEELEKKAEEY 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 143 H-MKHSLRYFEEESKDLAGRLQRSSQRIGELEWSLCAVAATQKKKPD--------GFSSRSKALLK-RQLEQSIREQILL 212
Cdd:PRK03918 528 EkLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEllkeleelGFESVEELEERlKELEPFYNEYLEL 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 213 KGHVTQLKESLKEVQLERDQyAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHR-----VEELERSLSRLKNQMAepl 287
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEE-LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEelreeYLELSRELAGLRAELE--- 683
|
250 260 270
....*....|....*....|....*....|...
gi 1904926754 288 ppdapavssevELQDLRKELERVAGELQAQVEN 320
Cdd:PRK03918 684 -----------ELEKRREEIKKTLEKLKEELEE 705
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
72-301 |
1.84e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 72 QEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLyhmkhslryf 151
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 152 eeesKDLAGRLQRSSQRIGELEwslcavAATQKKKPDGFSSRSKAL--LKRQLEQSIREQILLKGHVTQLKESLKEVQLE 229
Cdd:COG3883 89 ----GERARALYRSGGSVSYLD------VLLGSESFSDFLDRLSALskIADADADLLEELKADKAELEAKKAELEAKLAE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1904926754 230 RDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDAPAVSSEVELQ 301
Cdd:COG3883 159 LEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
73-405 |
1.95e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 73 EQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLEEEKKANNEKQKAeRELEGQIQRLNTEKK-----KLNTDLYHMKHS 147
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA-KAKKEELERLKKRLTgltpeKLEKELEELEKA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 148 LRYFEEESKDLAGRLQRSSQRIGELEWSLCAVAATQKKKPdgfssrskaLLKRQLEQSIREQILLKGHVtQLKESLKEVQ 227
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP---------VCGRELTEEHRKELLEEYTA-ELKRIEKELK 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 228 ----LERDQYAEQIKGERAQWQQR----MRKMSQEVCTLKEE-KKHDTHRVEELERSLSRLKNQMAEpLPPDAPAVSSEV 298
Cdd:PRK03918 470 eieeKERKLRKELRELEKVLKKESelikLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIK-LKGEIKSLKKEL 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 299 E-LQDLRKELERVAGELQAQvennqcisllnrgQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSAL 377
Cdd:PRK03918 549 EkLEELKKKLAELEKKLDEL-------------EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELE 615
|
330 340
....*....|....*....|....*...
gi 1904926754 378 QLEQQVKELQEKLGQVMETLTSAEKEPE 405
Cdd:PRK03918 616 REEKELKKLEEELDKAFEELAETEKRLE 643
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
212-388 |
1.97e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 212 LKGHVTQLKESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDA 291
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 292 ---PAVSSEVELQDLR-KELERVAGELQAQVENnqcisllnRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLE 367
Cdd:pfam12128 347 eqlPSWQSELENLEERlKALTGKHQDVTAKYNR--------RRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQ 418
|
170 180
....*....|....*....|.
gi 1904926754 368 ELkhENKSALQLEQQVKELQE 388
Cdd:pfam12128 419 AL--ESELREQLEAGKLEFNE 437
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
78-403 |
2.66e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKSLKQQ-KKQVEHQLEEEKKANNEKQKAErELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESK 156
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 157 DLAGRLQRSSQrigelewslcAVAATQKKKPdgfSSRSKALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAE- 235
Cdd:pfam15921 500 DLTASLQEKER----------AIEATNAEIT---KLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEi 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 236 ---------QIKG-----------ERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDAPAVS 295
Cdd:pfam15921 567 lrqqienmtQLVGqhgrtagamqvEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 296 SeveLQDLRKELERVAGELQaqvennQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELK----- 370
Cdd:pfam15921 647 A---VKDIKQERDQLLNEVK------TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRntlks 717
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1904926754 371 ------HENKSALQLEQQVK-------ELQEKLGQVMETLTSAEKE 403
Cdd:pfam15921 718 megsdgHAMKVAMGMQKQITakrgqidALQSKIQFLEEAMTNANKE 763
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
99-405 |
3.41e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 99 KKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLNTDL-------------------YHMKHSLRYFEEESKDLA 159
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgrelteEHRKELLEEYTAELKRIE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 160 GRLQRSSQRIGELEWSLCAVAATQKKKPDGFSSRSKALLKRQLEQSI-------------------REQILLKGHVTQLK 220
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLkkynleelekkaeeyeklkEKLIKLKGEIKSLK 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 221 ESLKEvqlerdqyAEQIKGERAQWQQRMRKMSQEVCTL-KEEKKHDTHRVEELERSLSRLKNQMAEPLPpdapAVSSEVE 299
Cdd:PRK03918 546 KELEK--------LEELKKKLAELEKKLDELEEELAELlKELEELGFESVEELEERLKELEPFYNEYLE----LKDAEKE 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 300 LQDLRKELERVAGELQAQVENnqcislLNRGQKERLREQEERLQEQQERLREREKRL-QQLAEPQSDLEELKHENKSALQ 378
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEE------LAETEKRLEELRKELEELEKKYSEEEYEELrEEYLELSRELAGLRAELEELEK 687
|
330 340
....*....|....*....|....*..
gi 1904926754 379 LEQQVKELQEKLGQVMETLTSAEKEPE 405
Cdd:PRK03918 688 RREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
95-317 |
3.64e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 40.24 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 95 LKQQKKQVEHQL-EEEKKANNEKQKAERELEGQIQRLNTEKKKLNTD-LYHMKHSLRYFEEEskdLAGRLQRSSQRIGEL 172
Cdd:PRK00106 26 MKSAKEAAELTLlNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKElLLEAKEEARKYREE---IEQEFKSERQELKQI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 173 EWSLCAVAATQKKKPDGFSSRSKALlkRQLEQSIREQillKGHVTqlkeslkevqlERDQYAEQIKGERAQWQQRMRKMS 252
Cdd:PRK00106 103 ESRLTERATSLDRKDENLSSKEKTL--ESKEQSLTDK---SKHID-----------EREEQVEKLEEQKKAELERVAALS 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1904926754 253 QEVC---TLKEEKKHDTH----RVEELERSLSRLKNQMAEPLppdapavssevelqdLRKELERVAGELQAQ 317
Cdd:PRK00106 167 QAEAreiILAETENKLTHeiatRIREAEREVKDRSDKMAKDL---------------LAQAMQRLAGEYVTE 223
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
86-403 |
4.80e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 86 SRLNDTIKSLKQQKKQVEH---QLEEEKKANNEKQKAERELEG-QIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGR 161
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEakkKAEEAKKADEAKKKAEEAKKAdEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 162 LQRSSQRIGELEWSLCAVAATQKKKPDGFSSRS---KALLKRQLEQSIREQ-----------ILLKGHVTQLKESLKEVQ 227
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEelkKAEEKKKAEEAKKAEedknmalrkaeEAKKAEEARIEEVMKLYE 1602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 228 LERDQYAEQIKGE-----RAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRLKNQMAEPLPPDAPAVSSEVELQD 302
Cdd:PTZ00121 1603 EEKKMKAEEAKKAeeakiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 303 LRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQ 382
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
|
330 340
....*....|....*....|.
gi 1904926754 383 VKELQEKLGQVMETLTSAEKE 403
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
78-261 |
6.12e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.53 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 78 LNSRSIKISRLNDTIKS-------LKQQKKQVEHQLEEE--KKANNEKQKAERE---LEGQIQRLNTEKKKLNTDLYHMK 145
Cdd:PRK05771 48 LRSLLTKLSEALDKLRSylpklnpLREEKKKVSVKSLEEliKDVEEELEKIEKEikeLEEEISELENEIKELEQEIERLE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 146 hSLRYFEEESKDL---------AGRLQRSSQRIGELEWSLC-------------AVAATQKKKPDgfsSRSKALLKRQLE 203
Cdd:PRK05771 128 -PWGNFDLDLSLLlgfkyvsvfVGTVPEDKLEELKLESDVEnveyistdkgyvyVVVVVLKELSD---EVEEELKKLGFE 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1904926754 204 qsiREQILLKGHVTQ----LKESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEE 261
Cdd:PRK05771 204 ---RLELEEEGTPSElireIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
195-390 |
7.50e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.23 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 195 KALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQ-----IKGERAQWQQRMRKMSQEVCTLKEEKkhdthrv 269
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEARAEL------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 270 EELERSLSRLKNQMAEPlPPDAPAVSSEVELQDLRKELERVAGELQAQV-----ENNQCISLLNRGQKERLREQEERLQE 344
Cdd:COG3206 236 AEAEARLAALRAQLGSG-PDALPELLQSPVIQQLRAQLAELEAELAELSarytpNHPDVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1904926754 345 QQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKL 390
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
64-322 |
7.59e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.32 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 64 LHARQSPCQEQAAVLNSRSIKISRLNDTI---KSLKQQKKQVEhqleeekKANNEKQKAERELEGQIQRLNTEKKKLNTD 140
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNKEVELEELKKILaedEKLLDEKKQFE-------KIAEELKGKEQELIFLLQAREKEIHDLEIQ 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 141 LYHMKHSLRYFEEESKDLAGRLQRSSQRIGELEWSLCAVAATQKKKPDGFSSRSKAL---------LKRQLEQSIREQIL 211
Cdd:pfam05483 459 LTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELkkhqediinCKKQEERMLKQIEN 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 212 LKGHVTQLKESLKEVQLERDQYAEQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELERSLSRlKNQMAEPLPPDA 291
Cdd:pfam05483 539 LEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEN-KNKNIEELHQEN 617
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1904926754 292 PAVSS------------EVELQDLRKELERVAGELQAQVENNQ 322
Cdd:pfam05483 618 KALKKkgsaenkqlnayEIKVNKLELELASAKQKFEEIIDNYQ 660
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
97-273 |
8.21e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.18 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 97 QQKKQVEHQLEEEKKANNEKQKAERELEGqiqrLNTEKKKLNTDLYHMKHSLRYFEEESK-------DLAGRLQRSSQRI 169
Cdd:TIGR00618 670 LPKELLASRQLALQKMQSEKEQLTYWKEM----LAQCQTLLRELETHIEEYDREFNEIENassslgsDLAAREDALNQSL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 170 GELE----WSLCAVAATQKKKpdgfSSRSKALLKR-----QLEQSIREQI-LLKGHVTQLKESLKEVQLERDQYA----- 234
Cdd:TIGR00618 746 KELMhqarTVLKARTEAHFNN----NEEVTAALQTgaelsHLAAEIQFFNrLREEDTHLLKTLEAEIGQEIPSDEdilnl 821
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1904926754 235 --EQIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHRVEELE 273
Cdd:TIGR00618 822 qcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLA 862
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
80-398 |
8.36e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.28 E-value: 8.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 80 SRSIKISRLNDTIKSLKQQKKqvEHQLEEEKKANNEKQKAERE---LEGQIQRLNTEKKKLNTdlyhMKHSLRYFEEESK 156
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLK--KYNLEELEKKAEEYEKLKEKlikLKGEIKSLKKELEKLEE----LKKKLAELEKKLD 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 157 DLAGRLQRSSQRIGELewslcavaatqkkkpdGFSSRSKALLK-RQLEQSIREQILLKGHVTQLKESLKEVQLERDQyAE 235
Cdd:PRK03918 567 ELEEELAELLKELEEL----------------GFESVEELEERlKELEPFYNEYLELKDAEKELEREEKELKKLEEE-LD 629
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 236 QIKGERAQWQQRMRKMSQEVCTLKEEKKHDTHR-----VEELERSLSRLKNQMAEplppdapavsseveLQDLRKELERV 310
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEEYEelreeYLELSRELAGLRAELEE--------------LEKRREEIKKT 695
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 311 AGELQAQvennqcisllnrgqkerlreqeerlqeqQERLREREKRLQQLAEPQSDLEELKHENKS--ALQLEQQVKELQE 388
Cdd:PRK03918 696 LEKLKEE----------------------------LEEREKAKKELEKLEKALERVEELREKVKKykALLKERALSKVGE 747
|
330
....*....|
gi 1904926754 389 KLGQVMETLT 398
Cdd:PRK03918 748 IASEIFEELT 757
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
191-414 |
9.48e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.59 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 191 SSRSKALLKRQLEQSIREQILLKGHVTQLKESLKEVQLERDQYAEQIkgerAQWQQRMRKMSQEVCTLKEEKKHDTHRVE 270
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI----AALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 271 ELERSLSRLKNQMAEPL---------PPDAPAVSSEVELQDLRKE--LERVAGELQAQVE----NNQCISLLNRGQKERL 335
Cdd:COG4942 94 ELRAELEAQKEELAELLralyrlgrqPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEelraDLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1904926754 336 REQEERLQEQQERLREREKRLQQLAEPQSDLE-ELKHENKSALQLEQQVKELQEKLGQVMETLTSAEKEPEAAVPASGTG 414
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEkELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
|