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Conserved domains on  [gi|1862722082|ref|NP_001371600|]
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excitatory amino acid transporter 4 isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SDF super family cl00573
Sodium:dicarboxylate symporter family;
58-117 1.88e-06

Sodium:dicarboxylate symporter family;


The actual alignment was detected with superfamily member pfam00375:

Pssm-ID: 444986 [Multi-domain]  Cd Length: 388  Bit Score: 45.59  E-value: 1.88e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862722082  58 FILLTVSAVVIGVSLAFALRPYqltyrqIKYFSFPGELLMRMLQMLVLPLIVSSLVTEIC 117
Cdd:pfam00375   1 LLLQILIALVLGILIGLFFPEL------AAWLKPLGDLFIRLLKMIIVPLIFASIISGIA 54
 
Name Accession Description Interval E-value
SDF pfam00375
Sodium:dicarboxylate symporter family;
58-117 1.88e-06

Sodium:dicarboxylate symporter family;


Pssm-ID: 425646 [Multi-domain]  Cd Length: 388  Bit Score: 45.59  E-value: 1.88e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862722082  58 FILLTVSAVVIGVSLAFALRPYqltyrqIKYFSFPGELLMRMLQMLVLPLIVSSLVTEIC 117
Cdd:pfam00375   1 LLLQILIALVLGILIGLFFPEL------AAWLKPLGDLFIRLLKMIIVPLIFASIISGIA 54
GltP COG1301
Na+/H+-dicarboxylate symporter [Energy production and conversion];
54-117 9.10e-06

Na+/H+-dicarboxylate symporter [Energy production and conversion];


Pssm-ID: 440912 [Multi-domain]  Cd Length: 406  Bit Score: 43.56  E-value: 9.10e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1862722082  54 RRNAFILLTVSAVVIGVSLAFALRPYQLTYrqikyFSFPGELLMRMLQMLVLPLIVSSLVTEIC 117
Cdd:COG1301     1 FKLSLTLQILIALVLGILLGLLLPELVAAV-----LKPLGDIFINLLKMIVVPLVFFSIVVGIA 59
 
Name Accession Description Interval E-value
SDF pfam00375
Sodium:dicarboxylate symporter family;
58-117 1.88e-06

Sodium:dicarboxylate symporter family;


Pssm-ID: 425646 [Multi-domain]  Cd Length: 388  Bit Score: 45.59  E-value: 1.88e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1862722082  58 FILLTVSAVVIGVSLAFALRPYqltyrqIKYFSFPGELLMRMLQMLVLPLIVSSLVTEIC 117
Cdd:pfam00375   1 LLLQILIALVLGILIGLFFPEL------AAWLKPLGDLFIRLLKMIIVPLIFASIISGIA 54
GltP COG1301
Na+/H+-dicarboxylate symporter [Energy production and conversion];
54-117 9.10e-06

Na+/H+-dicarboxylate symporter [Energy production and conversion];


Pssm-ID: 440912 [Multi-domain]  Cd Length: 406  Bit Score: 43.56  E-value: 9.10e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1862722082  54 RRNAFILLTVSAVVIGVSLAFALRPYQLTYrqikyFSFPGELLMRMLQMLVLPLIVSSLVTEIC 117
Cdd:COG1301     1 FKLSLTLQILIALVLGILLGLLLPELVAAV-----LKPLGDIFINLLKMIVVPLVFFSIVVGIA 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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