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Conserved domains on  [gi|1843419932|ref|NP_001369575|]
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smoothelin isoform i [Homo sapiens]

Protein Classification

Smoothelin domain-containing protein( domain architecture ID 10575943)

Smoothelin domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 570-619 4.98e-17

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


:

Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 75.43  E-value: 4.98e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843419932 570 KAPEGRSPLSAEELMTIEDEGVLDKMLDQSTDFEERKLIRAALRELRQRK 619
Cdd:pfam12510   1 EETSAASKLTAEELEAIEDEEVLDKLLETATDYEERRLIRAAIRELRKRK 50
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 73-122 5.03e-13

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


:

Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 64.26  E-value: 5.03e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843419932  73 AEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRAQE 122
Cdd:pfam12510   1 EETSAASKLTAEELEAIEDEEVLDKLLETATDYEERRLIRAAIRELRKRK 50
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 1-34 8.71e-07

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


:

Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 46.54  E-value: 8.71e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1843419932   1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAI 34
Cdd:pfam12510  10 TAEELEAIEDEEVLDKLLETATDYEERRLIRAAI 43
 
Name Accession Description Interval E-value
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 570-619 4.98e-17

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 75.43  E-value: 4.98e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843419932 570 KAPEGRSPLSAEELMTIEDEGVLDKMLDQSTDFEERKLIRAALRELRQRK 619
Cdd:pfam12510   1 EETSAASKLTAEELEAIEDEEVLDKLLETATDYEERRLIRAAIRELRKRK 50
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 73-122 5.03e-13

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 64.26  E-value: 5.03e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843419932  73 AEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRAQE 122
Cdd:pfam12510   1 EETSAASKLTAEELEAIEDEEVLDKLLETATDYEERRLIRAAIRELRKRK 50
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 1-34 8.71e-07

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 46.54  E-value: 8.71e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1843419932   1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAI 34
Cdd:pfam12510  10 TAEELEAIEDEEVLDKLLETATDYEERRLIRAAI 43
 
Name Accession Description Interval E-value
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 570-619 4.98e-17

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 75.43  E-value: 4.98e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843419932 570 KAPEGRSPLSAEELMTIEDEGVLDKMLDQSTDFEERKLIRAALRELRQRK 619
Cdd:pfam12510   1 EETSAASKLTAEELEAIEDEEVLDKLLETATDYEERRLIRAAIRELRKRK 50
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 73-122 5.03e-13

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 64.26  E-value: 5.03e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1843419932  73 AEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRAQE 122
Cdd:pfam12510   1 EETSAASKLTAEELEAIEDEEVLDKLLETATDYEERRLIRAAIRELRKRK 50
Smoothelin pfam12510
Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is ...
 1-34 8.71e-07

Smoothelin cytoskeleton protein; This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00307. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.


Pssm-ID: 463614 [Multi-domain]  Cd Length: 50  Bit Score: 46.54  E-value: 8.71e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1843419932   1 MADEALAGLDEGALRKLLEVTADLAERRRIRSAI 34
Cdd:pfam12510  10 TAEELEAIEDEEVLDKLLETATDYEERRLIRAAI 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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