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Conserved domains on  [gi|1819291724|ref|NP_001365681|]
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ubiquitin carboxyl-terminal hydrolase CYLD isoform 3 [Homo sapiens]

Protein Classification

CYLD_phos_site and Peptidase_C19N domain-containing protein( domain architecture ID 11279563)

protein containing domains CYLD_phos_site, CAP_GLY, and Peptidase_C19N

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYLD_phos_site pfam16607
Phosphorylation region of CYLD, unstructured; CYLD_phos_site is a natively unstructured region ...
 304-450 2.09e-101

Phosphorylation region of CYLD, unstructured; CYLD_phos_site is a natively unstructured region on a subset of tumour-suppressor and de-ubiquitinating enzyme CYLD proteins in eukaryotes. It lies between the second pair of CAP_GLY domains, pfam01302, on these proteins. This region of CYLD, being unstructured, carries a number of serine residues which, in response to cellular stimuli, become phosphorylated. This transient phosphorylation-state induces ubiquitination of TRAF2, a ubiquitin ligase that catalyzes both self-ubiquitination and the ubiquitination of specific target molecules involved in signal transduction.


:

Pssm-ID: 465194  Cd Length: 157  Bit Score: 313.04  E-value: 2.09e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 304 PESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSVDSQPQSKSKNTWYIDE------- 376
Cdd:pfam16607   1 PESVSQERRPPKLAFASRGGGDKGSSSHNKPKATGSTSDPGNRNRSEFFYTLNGSSVDSQPQPKSKNTWYIDEvaedpak 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724 377 ---EISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMP 450
Cdd:pfam16607  81 sltDTSPGFGHSSPPLQPPPTNSLSSENRFHSLPFSLTKMPSSNGSIGHSPLSLSVQSVMGELNTGPVQESPPSAAP 157
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
 580-935 8.72e-78

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 253.60  E-value: 8.72e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 580 GIQGHYN-SCYLDSTLFCLFAfssvldtvllrpkekndveyysetqellrteivnplriygyvcatkimklrkilekvea 658
Cdd:cd02670     1 GAQNHCNvSCYLDALLFAMFA----------------------------------------------------------- 21

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 659 asgftsEEKDPEEFLNILFHHILR--VEPLLKIRSAGQKVQD------CYFYQIFMEKNEKVGVPTIQQLLEWSFINSNl 730
Cdd:cd02670    22 ------EQQDPEEFFNFITDKLLMplLEPKVDIIHGGKKDQDddklvnERLLQIPVPDDDDGGGITLEQCLEQYFNNSV- 94

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 731 kFAEAPSCLIIQMPRFGK----DFKLFKKIFPSLELNITDLLEDTPRQCRICGglamYECRECYDDPDISAGKIKQFCKT 806
Cdd:cd02670    95 -FAKAPSCLIICLKRYGKtegkAQKMFKKILIPDEIDIPDFVADDPRACSKCQ----LECRVCYDDKDFSPTCGKFKLSL 169

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 807 CNTQVHLHPKRlnhkynpvslpkdlpdwdwrhgcipcqnmelfavlciETSHYVAFVKYGKD----------DSAWLFFD 876
Cdd:cd02670   170 CSAVCHRGTSL-------------------------------------ETGHYVAFVRYGSYsltetdneayNAQWVFFD 212

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724 877 SMADRDGGQNGFNIPqvtpcpevgeylkmsledlhsldsrriqgcARRLLCDAYMCMYQ 935
Cdd:cd02670   213 DMADRDGVSNGFNIP------------------------------AARLLEDPYMLFYQ 241
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 459-527 6.68e-21

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 87.26  E-value: 6.68e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724  459 VGSLAEVKENPpFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR 527
Cdd:smart01052   1 VGDRVEVGGGG-RRGTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 127-203 1.05e-17

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 78.01  E-value: 1.05e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724  127 VGCPVKVqlrsGEEKFPGVVRFRGPLLaerTVSGIFFGVELLEEGRGqgFTDGVYQGKQLFQCDEDCGVFVALDKLE 203
Cdd:smart01052   1 VGDRVEV----GGGGRRGTVRYVGPTP---FAPGVWVGVELDEPLRG--KNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 232-302 4.01e-11

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 59.52  E-value: 4.01e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1819291724  232 INSRVslKVGETIESGTVIFCDVLPGKEslGYFVGVDMDNP-IGNWDGRFDGVQLcsFACVE-STILLHINDI 302
Cdd:smart01052   1 VGDRV--EVGGGGRRGTVRYVGPTPFAP--GVWVGVELDEPlRGKNDGSVKGVRY--FECPPkHGIFVRPSKV 67
 
Name Accession Description Interval E-value
CYLD_phos_site pfam16607
Phosphorylation region of CYLD, unstructured; CYLD_phos_site is a natively unstructured region ...
 304-450 2.09e-101

Phosphorylation region of CYLD, unstructured; CYLD_phos_site is a natively unstructured region on a subset of tumour-suppressor and de-ubiquitinating enzyme CYLD proteins in eukaryotes. It lies between the second pair of CAP_GLY domains, pfam01302, on these proteins. This region of CYLD, being unstructured, carries a number of serine residues which, in response to cellular stimuli, become phosphorylated. This transient phosphorylation-state induces ubiquitination of TRAF2, a ubiquitin ligase that catalyzes both self-ubiquitination and the ubiquitination of specific target molecules involved in signal transduction.


Pssm-ID: 465194  Cd Length: 157  Bit Score: 313.04  E-value: 2.09e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 304 PESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSVDSQPQSKSKNTWYIDE------- 376
Cdd:pfam16607   1 PESVSQERRPPKLAFASRGGGDKGSSSHNKPKATGSTSDPGNRNRSEFFYTLNGSSVDSQPQPKSKNTWYIDEvaedpak 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724 377 ---EISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMP 450
Cdd:pfam16607  81 sltDTSPGFGHSSPPLQPPPTNSLSSENRFHSLPFSLTKMPSSNGSIGHSPLSLSVQSVMGELNTGPVQESPPSAAP 157
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
 580-935 8.72e-78

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 253.60  E-value: 8.72e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 580 GIQGHYN-SCYLDSTLFCLFAfssvldtvllrpkekndveyysetqellrteivnplriygyvcatkimklrkilekvea 658
Cdd:cd02670     1 GAQNHCNvSCYLDALLFAMFA----------------------------------------------------------- 21

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 659 asgftsEEKDPEEFLNILFHHILR--VEPLLKIRSAGQKVQD------CYFYQIFMEKNEKVGVPTIQQLLEWSFINSNl 730
Cdd:cd02670    22 ------EQQDPEEFFNFITDKLLMplLEPKVDIIHGGKKDQDddklvnERLLQIPVPDDDDGGGITLEQCLEQYFNNSV- 94

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 731 kFAEAPSCLIIQMPRFGK----DFKLFKKIFPSLELNITDLLEDTPRQCRICGglamYECRECYDDPDISAGKIKQFCKT 806
Cdd:cd02670    95 -FAKAPSCLIICLKRYGKtegkAQKMFKKILIPDEIDIPDFVADDPRACSKCQ----LECRVCYDDKDFSPTCGKFKLSL 169

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 807 CNTQVHLHPKRlnhkynpvslpkdlpdwdwrhgcipcqnmelfavlciETSHYVAFVKYGKD----------DSAWLFFD 876
Cdd:cd02670   170 CSAVCHRGTSL-------------------------------------ETGHYVAFVRYGSYsltetdneayNAQWVFFD 212

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724 877 SMADRDGGQNGFNIPqvtpcpevgeylkmsledlhsldsrriqgcARRLLCDAYMCMYQ 935
Cdd:cd02670   213 DMADRDGVSNGFNIP------------------------------AARLLEDPYMLFYQ 241
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 459-527 6.68e-21

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 87.26  E-value: 6.68e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724  459 VGSLAEVKENPpFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR 527
Cdd:smart01052   1 VGDRVEVGGGG-RRGTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 127-203 1.05e-17

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 78.01  E-value: 1.05e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724  127 VGCPVKVqlrsGEEKFPGVVRFRGPLLaerTVSGIFFGVELLEEGRGqgFTDGVYQGKQLFQCDEDCGVFVALDKLE 203
Cdd:smart01052   1 VGDRVEV----GGGGRRGTVRYVGPTP---FAPGVWVGVELDEPLRG--KNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 465-526 7.29e-16

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 72.82  E-value: 7.29e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1819291724 465 VKENPPFYGVIRWIGQPPGLNEVLAGLELeDECAGCTDGTFRGTRYFTCALKKALFVKLKSC 526
Cdd:pfam01302   5 VEVPGGRRGTVRYVGPVPFAPGVWVGVEL-DEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 127-202 1.88e-12

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 62.81  E-value: 1.88e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1819291724 127 VGCPVKVqlrsgEEKFPGVVRFRGPLlaeRTVSGIFFGVELlEEGRGQgfTDGVYQGKQLFQCDEDCGVFVALDKL 202
Cdd:pfam01302   1 VGDRVEV-----PGGRRGTVRYVGPV---PFAPGVWVGVEL-DEPVGK--NDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 232-302 4.01e-11

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 59.52  E-value: 4.01e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1819291724  232 INSRVslKVGETIESGTVIFCDVLPGKEslGYFVGVDMDNP-IGNWDGRFDGVQLcsFACVE-STILLHINDI 302
Cdd:smart01052   1 VGDRV--EVGGGGRRGTVRYVGPTPFAP--GVWVGVELDEPlRGKNDGSVKGVRY--FECPPkHGIFVRPSKV 67
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 232-290 1.50e-06

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 46.24  E-value: 1.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724 232 INSRVSLKVGETiesGTVIFCDVLPGKEslGYFVGVDMDNPIGNWDGRFDGVQLcsFAC 290
Cdd:pfam01302   1 VGDRVEVPGGRR---GTVRYVGPVPFAP--GVWVGVELDEPVGKNDGSVKGVRY--FEC 52
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 472-573 5.58e-04

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 43.91  E-value: 5.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 472 YGVIRWIGQPPGLNEVLAGLELeDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPVSNQIERCNSLAFG 551
Cdd:COG5244    16 FGTVRFIGKTKFKDGIWIGLEL-DDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDDSLLNGNAAYEKIKGGLVCESKGMDK 94

                          90       100
                  ....*....|....*....|..
gi 1819291724 552 gyLSEVVEENTPPKMEKEGLEI 573
Cdd:COG5244    95 --DGEIKQENHEDRIHFEESKI 114
 
Name Accession Description Interval E-value
CYLD_phos_site pfam16607
Phosphorylation region of CYLD, unstructured; CYLD_phos_site is a natively unstructured region ...
 304-450 2.09e-101

Phosphorylation region of CYLD, unstructured; CYLD_phos_site is a natively unstructured region on a subset of tumour-suppressor and de-ubiquitinating enzyme CYLD proteins in eukaryotes. It lies between the second pair of CAP_GLY domains, pfam01302, on these proteins. This region of CYLD, being unstructured, carries a number of serine residues which, in response to cellular stimuli, become phosphorylated. This transient phosphorylation-state induces ubiquitination of TRAF2, a ubiquitin ligase that catalyzes both self-ubiquitination and the ubiquitination of specific target molecules involved in signal transduction.


Pssm-ID: 465194  Cd Length: 157  Bit Score: 313.04  E-value: 2.09e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 304 PESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSVDSQPQSKSKNTWYIDE------- 376
Cdd:pfam16607   1 PESVSQERRPPKLAFASRGGGDKGSSSHNKPKATGSTSDPGNRNRSEFFYTLNGSSVDSQPQPKSKNTWYIDEvaedpak 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724 377 ---EISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMP 450
Cdd:pfam16607  81 sltDTSPGFGHSSPPLQPPPTNSLSSENRFHSLPFSLTKMPSSNGSIGHSPLSLSVQSVMGELNTGPVQESPPSAAP 157
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
 580-935 8.72e-78

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 253.60  E-value: 8.72e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 580 GIQGHYN-SCYLDSTLFCLFAfssvldtvllrpkekndveyysetqellrteivnplriygyvcatkimklrkilekvea 658
Cdd:cd02670     1 GAQNHCNvSCYLDALLFAMFA----------------------------------------------------------- 21

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 659 asgftsEEKDPEEFLNILFHHILR--VEPLLKIRSAGQKVQD------CYFYQIFMEKNEKVGVPTIQQLLEWSFINSNl 730
Cdd:cd02670    22 ------EQQDPEEFFNFITDKLLMplLEPKVDIIHGGKKDQDddklvnERLLQIPVPDDDDGGGITLEQCLEQYFNNSV- 94

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 731 kFAEAPSCLIIQMPRFGK----DFKLFKKIFPSLELNITDLLEDTPRQCRICGglamYECRECYDDPDISAGKIKQFCKT 806
Cdd:cd02670    95 -FAKAPSCLIICLKRYGKtegkAQKMFKKILIPDEIDIPDFVADDPRACSKCQ----LECRVCYDDKDFSPTCGKFKLSL 169

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 807 CNTQVHLHPKRlnhkynpvslpkdlpdwdwrhgcipcqnmelfavlciETSHYVAFVKYGKD----------DSAWLFFD 876
Cdd:cd02670   170 CSAVCHRGTSL-------------------------------------ETGHYVAFVRYGSYsltetdneayNAQWVFFD 212

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724 877 SMADRDGGQNGFNIPqvtpcpevgeylkmsledlhsldsrriqgcARRLLCDAYMCMYQ 935
Cdd:cd02670   213 DMADRDGVSNGFNIP------------------------------AARLLEDPYMLFYQ 241
Bbox1_CYLD cd19816
B-box-type 1 zinc finger found in tumor suppressor cylindromatosis (CYLD) and similar proteins; ...
 772-828 1.79e-25

B-box-type 1 zinc finger found in tumor suppressor cylindromatosis (CYLD) and similar proteins; CYLD, also termed ubiquitin carboxyl-terminal hydrolase CYLD, or deubiquitinating enzyme CYLD, or ubiquitin thioesterase CYLD, or ubiquitin-specific-processing protease CYLD, is a microtubule-associated deubiquitinase that specifically cleaves Lys-63-linked polyubiquitin chains. It plays a pivotal role in a wide range of cellular activities, including innate immunity, cell division, and ciliogenesis. CYLD antagonizes NF-kappaB and JNK signaling by disassembly of Lys63-linked ubiquitin chains synthesized in response to cytokine stimulation. Structural characterization reveals a small zinc-binding B-box inserted within the ubiquitin specific protease (USP) domain of CYLD. The B-box motif shows high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and is responsible for its intermolecular interaction and cytoplasmic localization. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif.


Pssm-ID: 380874  Cd Length: 56  Bit Score: 99.85  E-value: 1.79e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724 772 PRQCRICGGLAMYECRECYDDPDISaGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLP 828
Cdd:cd19816     1 PRECIICGGLAEYECRDCYLDPGIG-GKIKAFCKKCNKQTHLHPKRQNHKPRPLSVP 56
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 459-527 6.68e-21

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 87.26  E-value: 6.68e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724  459 VGSLAEVKENPpFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR 527
Cdd:smart01052   1 VGDRVEVGGGG-RRGTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 127-203 1.05e-17

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 78.01  E-value: 1.05e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1819291724  127 VGCPVKVqlrsGEEKFPGVVRFRGPLLaerTVSGIFFGVELLEEGRGqgFTDGVYQGKQLFQCDEDCGVFVALDKLE 203
Cdd:smart01052   1 VGDRVEV----GGGGRRGTVRYVGPTP---FAPGVWVGVELDEPLRG--KNDGSVKGVRYFECPPKHGIFVRPSKVE 68
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 465-526 7.29e-16

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 72.82  E-value: 7.29e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1819291724 465 VKENPPFYGVIRWIGQPPGLNEVLAGLELeDECAGCTDGTFRGTRYFTCALKKALFVKLKSC 526
Cdd:pfam01302   5 VEVPGGRRGTVRYVGPVPFAPGVWVGVEL-DEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 127-202 1.88e-12

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 62.81  E-value: 1.88e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1819291724 127 VGCPVKVqlrsgEEKFPGVVRFRGPLlaeRTVSGIFFGVELlEEGRGQgfTDGVYQGKQLFQCDEDCGVFVALDKL 202
Cdd:pfam01302   1 VGDRVEV-----PGGRRGTVRYVGPV---PFAPGVWVGVEL-DEPVGK--NDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 232-302 4.01e-11

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 59.52  E-value: 4.01e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1819291724  232 INSRVslKVGETIESGTVIFCDVLPGKEslGYFVGVDMDNP-IGNWDGRFDGVQLcsFACVE-STILLHINDI 302
Cdd:smart01052   1 VGDRV--EVGGGGRRGTVRYVGPTPFAP--GVWVGVELDEPlRGKNDGSVKGVRY--FECPPkHGIFVRPSKV 67
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
 580-935 4.33e-11

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 64.43  E-value: 4.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 580 GIQGHYNSCYLDSTLFCLFAfssvldtvllrpkEKNDVeyysetQELLRTEivnplriygyvcatkimkLRKILEKVEAA 659
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALFS-------------EQQDA------HEFLLFL------------------LDKLHEELKKS 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 660 SGFTSEEKDPEEFLNILFHHILRVEplLKIRSAGQ---KVQDCYFYQIFMEKNEKvGVPTIQQLLEWSFINSNL------ 730
Cdd:cd02257    44 SKRTSDSSSLKSLIHDLFGGKLEST--IVCLECGHesvSTEPELFLSLPLPVKGL-PQVSLEDCLEKFFKEEILegdncy 120

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 731 --------------KFAEAPSCLIIQMPRFGKDF-----KLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYecrecyd 791
Cdd:cd02257   121 kcekkkkqeatkrlKIKKLPPVLIIHLKRFSFNEdgtkeKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKY------- 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 792 dpdisagkikqfcktcntqvhlhpkrlnhkynpvslpkdlpdwdwrhgcipcqnmELFAVLC-----IETSHYVAFVKYG 866
Cdd:cd02257   194 -------------------------------------------------------ELVAVVVhsgtsADSGHYVAYVKDP 218

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724 867 KDDSaWLFFDSMadrdggqngfnipQVTPCPEvgeylkmslEDLHSLdsrriqgcaRRLLCDAYMCMYQ 935
Cdd:cd02257   219 SDGK-WYKFNDD-------------KVTEVSE---------EEVLEF---------GSLSSSAYILFYE 255
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 232-290 1.50e-06

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 46.24  E-value: 1.50e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1819291724 232 INSRVSLKVGETiesGTVIFCDVLPGKEslGYFVGVDMDNPIGNWDGRFDGVQLcsFAC 290
Cdd:pfam01302   1 VGDRVEVPGGRR---GTVRYVGPVPFAP--GVWVGVELDEPVGKNDGSVKGVRY--FEC 52
Bbox1_HOIP cd19815
B-box-type 1 zinc finger found in HOIL-1-interacting protein (HOIP) and similar proteins; HOIP, ...
 774-825 3.31e-04

B-box-type 1 zinc finger found in HOIL-1-interacting protein (HOIP) and similar proteins; HOIP, also termed RING finger protein 31 (RNF31), or zinc in-between-RING-finger ubiquitin-associated domain protein, together with HOIL-1 and SHARPIN, forms the E3-ligase complex (also known as linear-ubiquitin-chain assembly complex LUBAC) that regulates NF-kappaB activity and apoptosis. It also interacts with the atypical mammalian orphan receptor DAX-1, trigger DAX-1 ubiquitination and stabilization, and participate in repressing steroidogenic gene expression. HOIP contains a B-box motif that shows high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs). The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif.


Pssm-ID: 380873  Cd Length: 43  Bit Score: 38.86  E-value: 3.31e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1819291724 774 QCRICGGL-AMYECRECYDdpdisagkikQFCKTCNTQVHLHPKRLNHKYNPV 825
Cdd:cd19815     1 LCDLCGEAaASVFCASCED----------KLCLSCDDLYHKHPARRSHHRQPI 43
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 472-573 5.58e-04

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 43.91  E-value: 5.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1819291724 472 YGVIRWIGQPPGLNEVLAGLELeDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPVSNQIERCNSLAFG 551
Cdd:COG5244    16 FGTVRFIGKTKFKDGIWIGLEL-DDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDDSLLNGNAAYEKIKGGLVCESKGMDK 94

                          90       100
                  ....*....|....*....|..
gi 1819291724 552 gyLSEVVEENTPPKMEKEGLEI 573
Cdd:COG5244    95 --DGEIKQENHEDRIHFEESKI 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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