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Conserved domains on  [gi|1774222017|ref|NP_001363026|]
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tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform 4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ASKHA_NBD_OSGEPL1_QRI7_euk cd24134
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) ...
39-373 0e+00

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) and similar proteins from eukayotes; The family includes mammalian OSGEPL1 and yeast QRI7, which are the mitochondrial orthologs of the universal Kae1/ TsaD (also known as YgjD) protein. OSGEPL1/QRI7 (EC 2.3.1.234), also called mitochondrial tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. It is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. It is involved in mitochondrial genome maintenance.


:

Pssm-ID: 466984  Cd Length: 330  Bit Score: 523.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24134     1 VLGIETSCDDTGAAVVDSDGRILGEALASQKEIHEQYGGIVPTLAADLHRANIPRVVEEALEQAGLSLSDLDAVAVTVGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNK-VEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAP 197
Cdd:cd24134    81 GLALCLRVGLEFAKGLAAAHNKPLIPVHHMEAHALTARLTEEpVEFPFLVLLVSGGHCLLVLARGVGDYTILGTTLDDAP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 198 GDMLDKVARRLSLikHPECSTMSGGKAIEHLAKQGNRFHFDIKP-PLHHAKNCDFSFTGLQHVTDKIIMkkEKEEGIEKG 276
Cdd:cd24134   161 GEAFDKVARLLGL--KPLCDGLSGGAALEALAKEGDPAAFKPFPvPMSKRKDCDFSFSGLKTAVRRLIE--KLEKEEGVG 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 277 QILSSAADIAATVQHTMACHLVKRTHRAILFCKQrdlLPQNNAVLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLC 356
Cdd:cd24134   237 LSLPERADIAASFQHAAVRHLEDRLRRALKYCRE---LPPEPKTLVVSGGVASNQYLRKRLETLAEEHGLQLVCPPPRLC 313
                         330
                  ....*....|....*..
gi 1774222017 357 TDNGIMIAWNGIERLRA 373
Cdd:cd24134   314 TDNGVMIAWAGIERLRA 330
 
Name Accession Description Interval E-value
ASKHA_NBD_OSGEPL1_QRI7_euk cd24134
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) ...
39-373 0e+00

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) and similar proteins from eukayotes; The family includes mammalian OSGEPL1 and yeast QRI7, which are the mitochondrial orthologs of the universal Kae1/ TsaD (also known as YgjD) protein. OSGEPL1/QRI7 (EC 2.3.1.234), also called mitochondrial tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. It is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. It is involved in mitochondrial genome maintenance.


Pssm-ID: 466984  Cd Length: 330  Bit Score: 523.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24134     1 VLGIETSCDDTGAAVVDSDGRILGEALASQKEIHEQYGGIVPTLAADLHRANIPRVVEEALEQAGLSLSDLDAVAVTVGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNK-VEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAP 197
Cdd:cd24134    81 GLALCLRVGLEFAKGLAAAHNKPLIPVHHMEAHALTARLTEEpVEFPFLVLLVSGGHCLLVLARGVGDYTILGTTLDDAP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 198 GDMLDKVARRLSLikHPECSTMSGGKAIEHLAKQGNRFHFDIKP-PLHHAKNCDFSFTGLQHVTDKIIMkkEKEEGIEKG 276
Cdd:cd24134   161 GEAFDKVARLLGL--KPLCDGLSGGAALEALAKEGDPAAFKPFPvPMSKRKDCDFSFSGLKTAVRRLIE--KLEKEEGVG 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 277 QILSSAADIAATVQHTMACHLVKRTHRAILFCKQrdlLPQNNAVLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLC 356
Cdd:cd24134   237 LSLPERADIAASFQHAAVRHLEDRLRRALKYCRE---LPPEPKTLVVSGGVASNQYLRKRLETLAEEHGLQLVCPPPRLC 313
                         330
                  ....*....|....*..
gi 1774222017 357 TDNGIMIAWNGIERLRA 373
Cdd:cd24134   314 TDNGVMIAWAGIERLRA 330
TsaD COG0533
tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; ...
38-375 3.30e-109

tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyltransferase TsaD is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440299  Cd Length: 333  Bit Score: 324.27  E-value: 3.30e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:COG0533     2 LILGIETSCDETAAAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHLENILPLVEEALEEAGVTLKDIDAIAVTAG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSF--SLQLVgqLKKPFIPIHHMEAHALTIRLT-NKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLD 194
Cdd:COG0533    82 PGLIGALLVGVSFakALALA--LGKPLIGVNHLEGHLLAPFLEdPPPEFPFLALLVSGGHTQLVLVKGVGDYELLGETID 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 195 IAPGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGL-----QHVtDKIIMKKEK 269
Cdd:COG0533   160 DAAGEAFDKVAKLLGL-GYP------GGPAIDKLAKEGDPKAFRFPRPMLDRPGLDFSFSGLktavlNYI-EKLKQKGEE 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 270 EegiekgqilsSAADIAATVQHTMACHLVKRTHRAILFCKQRDllpqnnavLVASGGVASNFYIRRALEILTNATQCTLL 349
Cdd:COG0533   232 Q----------DKADIAASFQEAVVDVLVEKTRRALKETGVKR--------LVVAGGVAANSRLRERLEELAEKRGIRLF 293
                         330       340
                  ....*....|....*....|....*.
gi 1774222017 350 CPPPRLCTDNGIMIAWNGIERLRAGL 375
Cdd:COG0533   294 FPPLELCTDNAAMIAAAGYERLKAGE 319
T6A_TsaD_YgjD TIGR03723
tRNA threonylcarbamoyl adenosine modification protein TsaD; This model represents bacterial ...
39-372 3.41e-108

tRNA threonylcarbamoyl adenosine modification protein TsaD; This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas (which lack a cell wall). A reasonable hypothesis is that virulence-related activities after export are secondary to a bacterial domain-wide unknown function. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274748  Cd Length: 313  Bit Score: 320.91  E-value: 3.41e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:TIGR03723   1 ILGIETSCDETAVAIVDDGKGLLSNVVASQIDLHARYGGVVPELASRAHLENIPPLIEEALAEAGLTLSDIDAIAVTAGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSF--SLQLVgqLKKPFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIA 196
Cdd:TIGR03723  81 GLIGALLVGVSFakALALA--LNKPLIGVNHLEGHLLAPFLEKPLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 197 PGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGLQ----HVTDKIIMKKEKEeg 272
Cdd:TIGR03723 159 AGEAFDKVARLLGL-GYP------GGPAIDRLAKQGDPKAFKFPRPMLDRPGLDFSFSGLKtavlNLIEKLKQKGEEL-- 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 273 iekgqilsSAADIAATVQHTMACHLVKRTHRAilfCKQRDLlpqnNAVLVAsGGVASNFYIRRALEILTNATQCTLLCPP 352
Cdd:TIGR03723 230 --------TKADIAASFQAAVVDVLVEKTKRA---LKKTGL----KTLVVA-GGVAANSRLRERLEELAEKRGLEVFFPP 293
                         330       340
                  ....*....|....*....|
gi 1774222017 353 PRLCTDNGIMIAWNGIERLR 372
Cdd:TIGR03723 294 LELCTDNAAMIAAAGYERLK 313
PRK09604 PRK09604
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;
38-396 1.04e-107

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;


Pssm-ID: 236585  Cd Length: 332  Bit Score: 320.48  E-value: 1.04e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:PRK09604    2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSF--SLQLVgqLKKPFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDI 195
Cdd:PRK09604   82 PGLVGALLVGVSFakALALA--LNKPLIGVNHLEGHLLAPFLEEEPEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 196 APGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGN--RFHFdikPPLHHAKNCDFSFTGL---------QHVTDKii 264
Cdd:PRK09604  160 AAGEAFDKVAKLLGL-GYP------GGPAIDKLAKQGDpdAFKF---PRPMDRPGLDFSFSGLktavlntieKSEQTK-- 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 265 mkkekeegiekgqilssaADIAATVQHTMACHLVKRTHRAilfCKQRDLlpqnNAVLVAsGGVASNFYIRRALEILTNAT 344
Cdd:PRK09604  228 ------------------ADIAASFQAAVVDVLVIKTKRA---LKQTGV----KTLVVA-GGVAANSGLRERLAELAKKR 281
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1774222017 345 QCTLLCPPPRLCTDNGIMIAWNGIERLRAGLGILHDIEGIryePKVSLSDLS 396
Cdd:PRK09604  282 GIEVFIPPLKLCTDNAAMIAAAGYERLKAGEFSDLDLNAR---PRWPLDELS 330
TsaD pfam00814
tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, ...
59-365 3.97e-86

tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, products of COG0533 that belong to a small group of 60 proteins that are present in all three domains of life. COG0533 proteins are suggest to play a role in a post translational modification of certain tRNAs. For example, YgjD along with YeaZ, YjeE, and YrdC have been deemed necessary and sufficient for the tRNA modification. This modification involves the formation of N6-threonyl carbamoyl adenosine (t6A) at position 37 in the anti-codon stem loop which is critical for translational speed and accuracy. Structural analysis indicate that YeaZ lacks resemblance to any known protease active site. Together with the absence of a putative zinc-binding motif. Thus the likelyhood of it being a protease, as previously thought, has been negated. EC:2.3.1.234


Pssm-ID: 395656  Cd Length: 272  Bit Score: 263.09  E-value: 3.97e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  59 NVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKPGLALSLGVGLSFSLQLVGQL 138
Cdd:pfam00814   1 EILANVILSQKDLHAPYGGVVPELASRHHSERLMPLIDEALAEAGLSLEDLDAIAVTKGPGLFTGLRVGASFAKGLALAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 139 KKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHCLLALVQGvSDFLLLGKSLDIAPGDMLDKVARRLSLiKHPecst 218
Cdd:pfam00814  81 NKPLVGVNHLEAHALAARLETGLEFP-VVLLVSGGHTQVYAAKD-GRYEILGETLDDAAGEAFDKVARLLGL-PYP---- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 219 msGGKAIEHLAKQGnrfHFDIKPPLhhaKNCDFSFTGLQHVTDKIImkkekeegiekgQILSSAADIAATVQHTMACHLV 298
Cdd:pfam00814 154 --GGPKIEKLAKEG---AFEFPRPV---KGMDFSFSGLKTAVLRLI------------EKKEPKEDIAASFQEAVFDHLA 213
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1774222017 299 KRTHRAILFCKQRDllpqnnavLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLCTDNGIMIAW 365
Cdd:pfam00814 214 EKTERALKLPGAKE--------LVILGGVAANKRLREALTEMAEERGVKLFAPPLEYCTDNGAMIAW 272
 
Name Accession Description Interval E-value
ASKHA_NBD_OSGEPL1_QRI7_euk cd24134
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) ...
39-373 0e+00

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) and similar proteins from eukayotes; The family includes mammalian OSGEPL1 and yeast QRI7, which are the mitochondrial orthologs of the universal Kae1/ TsaD (also known as YgjD) protein. OSGEPL1/QRI7 (EC 2.3.1.234), also called mitochondrial tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. It is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. It is involved in mitochondrial genome maintenance.


Pssm-ID: 466984  Cd Length: 330  Bit Score: 523.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24134     1 VLGIETSCDDTGAAVVDSDGRILGEALASQKEIHEQYGGIVPTLAADLHRANIPRVVEEALEQAGLSLSDLDAVAVTVGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNK-VEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAP 197
Cdd:cd24134    81 GLALCLRVGLEFAKGLAAAHNKPLIPVHHMEAHALTARLTEEpVEFPFLVLLVSGGHCLLVLARGVGDYTILGTTLDDAP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 198 GDMLDKVARRLSLikHPECSTMSGGKAIEHLAKQGNRFHFDIKP-PLHHAKNCDFSFTGLQHVTDKIIMkkEKEEGIEKG 276
Cdd:cd24134   161 GEAFDKVARLLGL--KPLCDGLSGGAALEALAKEGDPAAFKPFPvPMSKRKDCDFSFSGLKTAVRRLIE--KLEKEEGVG 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 277 QILSSAADIAATVQHTMACHLVKRTHRAILFCKQrdlLPQNNAVLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLC 356
Cdd:cd24134   237 LSLPERADIAASFQHAAVRHLEDRLRRALKYCRE---LPPEPKTLVVSGGVASNQYLRKRLETLAEEHGLQLVCPPPRLC 313
                         330
                  ....*....|....*..
gi 1774222017 357 TDNGIMIAWNGIERLRA 373
Cdd:cd24134   314 TDNGVMIAWAGIERLRA 330
TsaD COG0533
tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; ...
38-375 3.30e-109

tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyltransferase TsaD is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440299  Cd Length: 333  Bit Score: 324.27  E-value: 3.30e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:COG0533     2 LILGIETSCDETAAAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHLENILPLVEEALEEAGVTLKDIDAIAVTAG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSF--SLQLVgqLKKPFIPIHHMEAHALTIRLT-NKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLD 194
Cdd:COG0533    82 PGLIGALLVGVSFakALALA--LGKPLIGVNHLEGHLLAPFLEdPPPEFPFLALLVSGGHTQLVLVKGVGDYELLGETID 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 195 IAPGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGL-----QHVtDKIIMKKEK 269
Cdd:COG0533   160 DAAGEAFDKVAKLLGL-GYP------GGPAIDKLAKEGDPKAFRFPRPMLDRPGLDFSFSGLktavlNYI-EKLKQKGEE 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 270 EegiekgqilsSAADIAATVQHTMACHLVKRTHRAILFCKQRDllpqnnavLVASGGVASNFYIRRALEILTNATQCTLL 349
Cdd:COG0533   232 Q----------DKADIAASFQEAVVDVLVEKTRRALKETGVKR--------LVVAGGVAANSRLRERLEELAEKRGIRLF 293
                         330       340
                  ....*....|....*....|....*.
gi 1774222017 350 CPPPRLCTDNGIMIAWNGIERLRAGL 375
Cdd:COG0533   294 FPPLELCTDNAAMIAAAGYERLKAGE 319
ASKHA_NBD_TsaD_bac cd24133
nucleotide-binding domain (NBD) of bacterial tRNA N6-adenosine threonylcarbamoyltransferase ...
39-374 3.39e-108

nucleotide-binding domain (NBD) of bacterial tRNA N6-adenosine threonylcarbamoyltransferase TsaD and similar proteins; TsaD (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD, or tRNA threonylcarbamoyladenosine biosynthesis protein TsaD, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.


Pssm-ID: 466983  Cd Length: 328  Bit Score: 321.74  E-value: 3.39e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24133     1 ILGIETSCDETAVAVVDDGGKILSNVVSSQIDLHAKYGGVVPEIASRAHLENIIPVVEEALEEAGLTLDDIDAIAVTYGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTN-KVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAP 197
Cdd:cd24133    81 GLIGALLVGVSFAKALAFALNKPLIGVNHLEGHILAPFLEDpPPEFPFLALLVSGGHTQLVLVKDFGRYELLGETRDDAA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 198 GDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGLQ----HVTDKIIMKKEKEegi 273
Cdd:cd24133   161 GEAFDKVAKLLGL-GYP------GGPAIDKLAKEGDPTAFVFPRPMLKRDGYDFSFSGLKtavlNYLEKNKQDGIEQ--- 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 274 ekgqilsSAADIAATVQHTMACHLVKRTHRAilfCKQRDLlpqnNAVLVAsGGVASNFYIRRALEILTNATQCTLLCPPP 353
Cdd:cd24133   231 -------NKADIAASFQEAVVDVLVEKTLRA---AKETGI----KRLVVA-GGVAANSRLREKLEEAAEKRGLEVYIPPP 295
                         330       340
                  ....*....|....*....|.
gi 1774222017 354 RLCTDNGIMIAWNGIERLRAG 374
Cdd:cd24133   296 ELCTDNAAMIAAAGYYRYKRG 316
T6A_TsaD_YgjD TIGR03723
tRNA threonylcarbamoyl adenosine modification protein TsaD; This model represents bacterial ...
39-372 3.41e-108

tRNA threonylcarbamoyl adenosine modification protein TsaD; This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas (which lack a cell wall). A reasonable hypothesis is that virulence-related activities after export are secondary to a bacterial domain-wide unknown function. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274748  Cd Length: 313  Bit Score: 320.91  E-value: 3.41e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:TIGR03723   1 ILGIETSCDETAVAIVDDGKGLLSNVVASQIDLHARYGGVVPELASRAHLENIPPLIEEALAEAGLTLSDIDAIAVTAGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSF--SLQLVgqLKKPFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIA 196
Cdd:TIGR03723  81 GLIGALLVGVSFakALALA--LNKPLIGVNHLEGHLLAPFLEKPLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 197 PGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGLQ----HVTDKIIMKKEKEeg 272
Cdd:TIGR03723 159 AGEAFDKVARLLGL-GYP------GGPAIDRLAKQGDPKAFKFPRPMLDRPGLDFSFSGLKtavlNLIEKLKQKGEEL-- 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 273 iekgqilsSAADIAATVQHTMACHLVKRTHRAilfCKQRDLlpqnNAVLVAsGGVASNFYIRRALEILTNATQCTLLCPP 352
Cdd:TIGR03723 230 --------TKADIAASFQAAVVDVLVEKTKRA---LKKTGL----KTLVVA-GGVAANSRLRERLEELAEKRGLEVFFPP 293
                         330       340
                  ....*....|....*....|
gi 1774222017 353 PRLCTDNGIMIAWNGIERLR 372
Cdd:TIGR03723 294 LELCTDNAAMIAAAGYERLK 313
PRK09604 PRK09604
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;
38-396 1.04e-107

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;


Pssm-ID: 236585  Cd Length: 332  Bit Score: 320.48  E-value: 1.04e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:PRK09604    2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSF--SLQLVgqLKKPFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDI 195
Cdd:PRK09604   82 PGLVGALLVGVSFakALALA--LNKPLIGVNHLEGHLLAPFLEEEPEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 196 APGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGN--RFHFdikPPLHHAKNCDFSFTGL---------QHVTDKii 264
Cdd:PRK09604  160 AAGEAFDKVAKLLGL-GYP------GGPAIDKLAKQGDpdAFKF---PRPMDRPGLDFSFSGLktavlntieKSEQTK-- 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 265 mkkekeegiekgqilssaADIAATVQHTMACHLVKRTHRAilfCKQRDLlpqnNAVLVAsGGVASNFYIRRALEILTNAT 344
Cdd:PRK09604  228 ------------------ADIAASFQAAVVDVLVIKTKRA---LKQTGV----KTLVVA-GGVAANSGLRERLAELAKKR 281
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1774222017 345 QCTLLCPPPRLCTDNGIMIAWNGIERLRAGLGILHDIEGIryePKVSLSDLS 396
Cdd:PRK09604  282 GIEVFIPPLKLCTDNAAMIAAAGYERLKAGEFSDLDLNAR---PRWPLDELS 330
gcp_kae1 TIGR00329
metallohydrolase, glycoprotease/Kae1 family; This subfamily includes the well-studied secreted ...
40-364 1.73e-86

metallohydrolase, glycoprotease/Kae1 family; This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 129429 [Multi-domain]  Cd Length: 305  Bit Score: 265.37  E-value: 1.73e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  40 LGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKPG 119
Cdd:TIGR00329   1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAVTRGPG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 120 LALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRL-TNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAPG 198
Cdd:TIGR00329  81 LGGSLRVGATFARSLALALNKPLIGVNHLLGHIYIPRLdTNIPQFPFVSLLVSGGHTQIILVKGIGDYEVLGETLDDAVG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 199 DMLDKVARRLSLiKHPecstmsGGKAIEHLAKQG--NRFHFDIkpPLHHAKNCDFSFTGL----QHVTDKIIMKKEKEEG 272
Cdd:TIGR00329 161 EAFDKVARLLGL-GYP------GGPKIEELAKKGdaLPFYFPL--PYTVKPMLDFSFSGLktaaRRKIEKLGKNLNEATK 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 273 iekgqilssaADIAATVQHTMACHLVKRTHRAIlfcKQRDLlpqnNAVLVAsGGVASNFYIRRALEILTNATQCTLLCPP 352
Cdd:TIGR00329 232 ----------EDIAYSFQETAFDHLIEKTKRAL---KDTNP----KELVLV-GGVSANKRLREKLETLCQELNVEFYYPP 293
                         330
                  ....*....|..
gi 1774222017 353 PRLCTDNGIMIA 364
Cdd:TIGR00329 294 LEFCSDNGAMIA 305
TsaD pfam00814
tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, ...
59-365 3.97e-86

tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, products of COG0533 that belong to a small group of 60 proteins that are present in all three domains of life. COG0533 proteins are suggest to play a role in a post translational modification of certain tRNAs. For example, YgjD along with YeaZ, YjeE, and YrdC have been deemed necessary and sufficient for the tRNA modification. This modification involves the formation of N6-threonyl carbamoyl adenosine (t6A) at position 37 in the anti-codon stem loop which is critical for translational speed and accuracy. Structural analysis indicate that YeaZ lacks resemblance to any known protease active site. Together with the absence of a putative zinc-binding motif. Thus the likelyhood of it being a protease, as previously thought, has been negated. EC:2.3.1.234


Pssm-ID: 395656  Cd Length: 272  Bit Score: 263.09  E-value: 3.97e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  59 NVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKPGLALSLGVGLSFSLQLVGQL 138
Cdd:pfam00814   1 EILANVILSQKDLHAPYGGVVPELASRHHSERLMPLIDEALAEAGLSLEDLDAIAVTKGPGLFTGLRVGASFAKGLALAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 139 KKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHCLLALVQGvSDFLLLGKSLDIAPGDMLDKVARRLSLiKHPecst 218
Cdd:pfam00814  81 NKPLVGVNHLEAHALAARLETGLEFP-VVLLVSGGHTQVYAAKD-GRYEILGETLDDAAGEAFDKVARLLGL-PYP---- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 219 msGGKAIEHLAKQGnrfHFDIKPPLhhaKNCDFSFTGLQHVTDKIImkkekeegiekgQILSSAADIAATVQHTMACHLV 298
Cdd:pfam00814 154 --GGPKIEKLAKEG---AFEFPRPV---KGMDFSFSGLKTAVLRLI------------EKKEPKEDIAASFQEAVFDHLA 213
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1774222017 299 KRTHRAILFCKQRDllpqnnavLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLCTDNGIMIAW 365
Cdd:pfam00814 214 EKTERALKLPGAKE--------LVILGGVAANKRLREALTEMAEERGVKLFAPPLEYCTDNGAMIAW 272
ASKHA_NBD_TsaD-like cd24097
nucleotide-binding domain (NBD) of TsaD and similar proteins; TsaD (EC 2.3.1.234), also called ...
39-373 8.42e-69

nucleotide-binding domain (NBD) of TsaD and similar proteins; TsaD (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD, or tRNA threonylcarbamoyladenosine biosynthesis protein TsaD, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction. The family also includes mammalian OSGEP-like protein 1 (OSGEPL1) and yeast protein Qri7, which are the mitochondrial versions of the universal Kae1/TsaD (also known as YgjD) protein and essential for mitochondrial genome maintenance.


Pssm-ID: 466947  Cd Length: 313  Bit Score: 220.24  E-value: 8.42e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24097     1 VLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKV-EFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAP 197
Cdd:cd24097    81 GLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPMLEDNPpEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 198 GDMLDKVARRLSLikhpecSTMsGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGLQHVTDKIIMKKEKEEgiekgq 277
Cdd:cd24097   161 GEAFDKTAKLLGL------DYP-GGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDE------ 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 278 ilSSAADIAATVQHTMACHLVKRTHRAilfckqrdLLPQNNAVLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLCT 357
Cdd:cd24097   228 --QTRADIARAFEDAVVDTLMIKCKRA--------LDSTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCT 297
                         330
                  ....*....|....*.
gi 1774222017 358 DNGIMIAWNGIERLRA 373
Cdd:cd24097   298 DNGAMIAYAGMVRFKA 313
ASKHA_NBD_Kae1_TsaD cd24031
nucleotide-binding domain (NBD) of the Kae1/TsaD family tRNA N6-adenosine ...
39-373 3.47e-67

nucleotide-binding domain (NBD) of the Kae1/TsaD family tRNA N6-adenosine threonylcarbamoyltransferase; tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. The family includes different orthologous of tRNA N6-adenosine threonylcarbamoyltransferase, such as bacterial kinase-associated endopeptidase 1 (Kae1) and TsaD (also known as YgjD) protein, mammalian O-sialoglycoprotein endopeptidase (OSGEP) and yeast protein Kae1, as well as mammalian OSGEP-like protein 1 (OSGEPL1) and yeast protein Qri7, which are the mitochondrial versions of the universal Kae1/TsaD (also known as YgjD) protein and essential for mitochondrial genome maintenance.


Pssm-ID: 466881  Cd Length: 304  Bit Score: 215.81  E-value: 3.47e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQteVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24031     1 VLGIEGSADKTGVGIVDDEGKVLANQLDTY--VTPKAGGIVPEEAARHHARKIVPLIQEALKESGLTAKDIDLIAYTQGP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKvEFPFLVLLISGGHCLLALVQGvSDFLLLGKSLDIAPG 198
Cdd:cd24031    79 GLGGALRVGATVARTLAVAWNKPIIGVNHCIGHLEIPKLNTP-AFPPVALYVSGGNTQVIAYTG-GRYRVFGETIDIAVG 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 199 DMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRfhfDIKPPlHHAKNCDFSFTGLQhvtdKIIMKKEKEEGIEKGQI 278
Cdd:cd24031   157 NALDKFARELGL-DYP------GGPLIEKMAAQGKK---LVELP-YTVKGMDFSFSGLL----TAAARTYRDGGTDEQTR 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 279 lssaADIAATVQHTMACHLVKRTHRAILFCKQRDllpqnnavLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLCTD 358
Cdd:cd24031   222 ----EDIAYSFQETVFDMLVEKTERALAHTNKKE--------VVLVGGVSANNRLREMLATMCEKRGGEFFYPPPEFCTD 289
                         330
                  ....*....|....*
gi 1774222017 359 NGIMIAWNGIERLRA 373
Cdd:cd24031   290 NGAMIAYAGLEMFKA 304
ASKHA_NBD_Kae1_arch_bac cd24131
nucleotide-binding domain (NBD) of tRNA N6-adenosine threonylcarbamoyltransferase (Kae1) and ...
38-374 1.62e-49

nucleotide-binding domain (NBD) of tRNA N6-adenosine threonylcarbamoyltransferase (Kae1) and similar proteins mainly from archaea and bacteria; Kae1 (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1, or tRNA threonylcarbamoyladenosine biosynthesis protein Kae1, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. The family also includes bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (EC 2.3.1.234/EC 2.7.11.1), which contains a Kae1 domain and a Bud32 domain. The Kae1 domain may play a catalytic role and the Bud32 domain probably displays kinase activity that regulates Kae1 function.


Pssm-ID: 466981  Cd Length: 323  Bit Score: 170.14  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLgeAIHSQTEVHlKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:cd24131     2 IVLGIEGTAHTFGVGIVDSEGEVL--ANVTDTYVP-EKGGIHPREAAEHHSEVAPELIKKALEEAGVSLNDIDLIAFSQG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHC-LLALVQGvsDFLLLGKSLDIA 196
Cdd:cd24131    79 PGLGPCLRVVATAARALALKLDKPLVGVNHCIAHIEIGRLTTGAKDP-VTLYVSGGNTqVIAYVNG--RYRVFGETLDIG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 197 PGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHfdikpPLHHA-KNCDFSFTGLqhvtdkiimkkekeeGIEK 275
Cdd:cd24131   156 IGNALDKFAREVGL-GHP------GGPKIEKLAEKGKKYV-----ELPYTvKGMDLSFSGL---------------LTAA 208
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 276 GQILSSAA---DIAATVQHTMACHLVKRTHRAILFCKQRDLLpqnnavLVasGGVASNFYIRRALEILTNATQCTLLCPP 352
Cdd:cd24131   209 LRAYKSGArleDVCYSLQETAFAMLVEVTERALAHTGKDEVL------LV--GGVAANNRLREMLREMCEERGAKFYVPP 280
                         330       340
                  ....*....|....*....|..
gi 1774222017 353 PRLCTDNGIMIAWNGIERLRAG 374
Cdd:cd24131   281 PELCGDNGAMIAWTGLLMYKHG 302
ASKHA_NBD_Kae1-like cd24096
nucleotide-binding domain (NBD) of Kae1 and similar proteins; Kae1 (EC 2.3.1.234), also called ...
38-374 7.60e-48

nucleotide-binding domain (NBD) of Kae1 and similar proteins; Kae1 (EC 2.3.1.234), also called kinase-associated endopeptidase 1, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, kinase-associated endopeptidase 1 (Kae1), t(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1, or tRNA threonylcarbamoyladenosine biosynthesis protein Kae1, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. OSGEP (EC 2.3.1.234), also called tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP, tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP, is the mammalian orthologue of kinase-associated endopeptidase Kae1. The family also includes bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (EC 2.3.1.234/EC 2.7.11.1), which contains a Kae1 domain and a Bud32 domain. The Kae1 domain may play a catalytic role and the Bud32 domain probably displays kinase activity that regulates Kae1 function.


Pssm-ID: 466946  Cd Length: 301  Bit Score: 165.30  E-value: 7.60e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHSQTEvhlKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:cd24096     1 ICLGIEGTAHTFGVGIVDSDGKVLANVRDMYTP---PKGGIHPREAADHHAEVFDKLLSEALEEAGVTINDIDLIAFSQG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHC-LLALVQGvsDFLLLGKSLDIA 196
Cdd:cd24096    78 PGLGPSLRVTATVARTLAVLLNKPIIGVNHCIAHIEIGKLTTGAKDP-VVLYVSGGNTqVIAYVGK--RYRVFGETLDIG 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 197 PGDMLDKVARRLSlIKHPecstmsGGKAIEHLAKQGNRFhfdIKPPlHHAKNCDFSFTGLQHVTDKIIMKKEkeegiekg 276
Cdd:cd24096   155 IGNCLDQFARELG-LPFP------GGPKIEKLAEKGKKL---IDLP-YTVKGMDVSFSGLLTAAERAYKSGY-------- 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 277 qilsSAADIAATVQHTMACHLVKRTHRAILFCKQRDLLpqnnavLVasGGVASNFYIRRALEILTNATQCTLLCPPPRLC 356
Cdd:cd24096   216 ----RKEDLCYSLQETAFAMLVEITERALAHTGKDEVL------LV--GGVAANNRLREMLKAMCEDRGIKFFVPPKEYC 283
                         330
                  ....*....|....*...
gi 1774222017 357 TDNGIMIAWNGIERLRAG 374
Cdd:cd24096   284 GDNGAMIAWTGLLMYKAG 301
arch_KAE1 TIGR03722
universal archaeal protein Kae1; This family represents the archaeal protein Kae1. Its partner ...
40-374 4.02e-47

universal archaeal protein Kae1; This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274747  Cd Length: 322  Bit Score: 163.97  E-value: 4.02e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  40 LGIETSCDDTAAAVVDETGNVLGEAIHSQTEvhlKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKPG 119
Cdd:TIGR03722   1 LGIEGTAHTFGVGIVDEDGEILANVSDTYVP---EKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 120 LALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHC-LLALVQGvsDFLLLGKSLDIAPG 198
Cdd:TIGR03722  78 LGPCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGAKDP-VVLYVSGGNTqVIAYRNG--RYRVFGETLDIGLG 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 199 DMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHfdikpPLHHA-KNCDFSFTGLqhvtdkiimkkekeegiekgq 277
Cdd:TIGR03722 155 NALDKFAREVGL-GHP------GGPKIEELAEKGKEYI-----ELPYTvKGMDLSFSGL--------------------- 201
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 278 iLSSA----------ADIAATVQHTMACHLVKRTHRAILFCKQRDLLpqnnavLVasGGVASNFYIRRALEILTNATQCT 347
Cdd:TIGR03722 202 -LTAAlraykkgarlEDVCYSLQETAFAMLVEVTERALAHTGKKEVL------LV--GGVAANRRLREMLELMAEDRGAK 272
                         330       340
                  ....*....|....*....|....*..
gi 1774222017 348 LLCPPPRLCTDNGIMIAWNGIERLRAG 374
Cdd:TIGR03722 273 FYVPPPEYAGDNGAMIAYTGLLMYKHG 299
PRK14878 PRK14878
UGMP family protein; Provisional
40-377 2.69e-45

UGMP family protein; Provisional


Pssm-ID: 184878  Cd Length: 323  Bit Score: 158.93  E-value: 2.69e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  40 LGIETSCDDTAAAVVDEtGNVLGEAIHSQTEvhlKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKPG 119
Cdd:PRK14878    1 LGIESTAHTLGVGIVKE-DKVLANVRDTYVP---EKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 120 LALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHCL-LALVQGvsDFLLLGKSLDIAPG 198
Cdd:PRK14878   77 LGPALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTTGAKDP-VVLYVSGGNTQvLAFRGG--RYRVFGETLDIAIG 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 199 DMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFHfdikpPLHHA-KNCDFSFTGLqhVTDKIIMKKEKEegiekgq 277
Cdd:PRK14878  154 NALDTFAREVGL-APP------GGPAIEKCAEKGEKYI-----ELPYVvKGQDLSFSGL--LTAALRLYKGKE------- 212
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 278 ilsSAADIAATVQHTMACHLVKRTHRAILFCKQRDLlpqnnaVLVasGGVASNFYIRRALEILTNATQCTLLCPPPRLCT 357
Cdd:PRK14878  213 ---RLEDVCYSLRETAFAMLVEVTERALAHTGKKEV------LLV--GGVAANRRLREKLEIMAEDRGAKFYVVPPEYAG 281
                         330       340
                  ....*....|....*....|
gi 1774222017 358 DNGIMIAWNGIERLRAGLGI 377
Cdd:PRK14878  282 DNGAMIAYTGLLAYKHGVTI 301
PTZ00340 PTZ00340
O-sialoglycoprotein endopeptidase-like protein; Provisional
38-374 8.38e-42

O-sialoglycoprotein endopeptidase-like protein; Provisional


Pssm-ID: 240369  Cd Length: 345  Bit Score: 150.57  E-value: 8.38e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHsqTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:PTZ00340    2 LALGIEGSANKLGVGIVTSDGEILSNVRE--TYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHcllALVQGVSD--FLLLGKSLDI 195
Cdd:PTZ00340   80 PGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENP-VVLYVSGGN---TQVIAYSEhrYRIFGETIDI 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 196 APGDMLDKVARRLSLIKHPecstmSGGKAIEHLAKQGNRFhfdIKPPlHHAKNCDFSFTGLQHVTDKII---MKKEKEEG 272
Cdd:PTZ00340  156 AVGNCLDRFARLLNLSNDP-----APGYNIEQLAKKGKNL---IELP-YVVKGMDMSFSGILTYIEDLVehpQFKDVVSE 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 273 IEKGQILSSAADIAATVQHTMACHLVKRTHRAILFCKQRDLLpqnnavLVasGGVASNFYIRRALEILTNATQCTLLCPP 352
Cdd:PTZ00340  227 IVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVL------IV--GGVGCNLRLQEMMQQMAKERGGKLFAMD 298
                         330       340
                  ....*....|....*....|..
gi 1774222017 353 PRLCTDNGIMIAWNGIERLRAG 374
Cdd:PTZ00340  299 ERYCIDNGAMIAYAGLLEYLSG 320
PRK09605 PRK09605
bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase;
38-374 9.17e-40

bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase;


Pssm-ID: 236586 [Multi-domain]  Cd Length: 535  Bit Score: 148.88  E-value: 9.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLgeAIHSQTEVHlKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:PRK09605    2 IVLGIEGTAWKTSAGIVDSDGDVL--FNESDPYKP-PSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHaLTI-RLTNKVEFPfLVLLISGGHC-LLALVQGvsDFLLLGKSLDI 195
Cdd:PRK09605   79 PGLGPCLRVVATAARALALSLDVPLIGVNHCVAH-VEIgRLTTGAEDP-VTLYVSGGNTqVLAYLNG--RYRVFGETLDI 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 196 APGDMLDKVARRLSLiKHPecstmsGGKAIEHLAKQGNRFhfdIKPPlHHAKNCDFSFTGlqhvtdkiimkkekeegiek 275
Cdd:PRK09605  155 GVGNALDKFARHVGL-PHP------GGPKIEKLAKDGKKY---IDLP-YVVKGMDFSFSG-------------------- 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 276 gqILSSA----------ADIAATVQHTMACHLVKRTHRAIlfckqrdLLPQNNAVLVAsGGVASNFYIRRALEILTNATQ 345
Cdd:PRK09605  204 --LLTAAkraydageplEDVCYSLQETAFAMLTEVTERAL-------AHTGKDEVLLV-GGVAANNRLREMLKEMCEERG 273
                         330       340
                  ....*....|....*....|....*....
gi 1774222017 346 CTLLCPPPRLCTDNGIMIAWNGIERLRAG 374
Cdd:PRK09605  274 ADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302
ASKHA_NBD_OSGEP_like_euk cd24132
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar ...
38-374 1.20e-33

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar proteins mainly from eukaryotes; OSGEP (EC 2.3.1.234), also called tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP, tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP, is a component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. OSGEP is the mammalian orthologue of kinase-associated endopeptidase Kae1.


Pssm-ID: 466982  Cd Length: 309  Bit Score: 127.66  E-value: 1.20e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDETGNVLGEAIHsqTEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:cd24132     1 IALGIEGSANKLGVGIVRSDGEILSNPRH--TYITPPGQGFLPRDTAKHHRAHILDLVKEALKEAGITPSDIDCICYTKG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 118 PGLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKVEFPfLVLLISGGHC-LLALVQGVsdFLLLGKSLDIA 196
Cdd:cd24132    79 PGMGAPLQSVAVVARTLSQLWNKPLVGVNHCVGHIEMGRLVTGAQNP-VVLYVSGGNTqVIAYSEKR--YRIFGETIDIA 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 197 PGDMLDKVARRLSLIKHPecstmSGGKAIEHLAKQGNRFHfdikpPLHHA-KNCDFSFTGLQHVTDKIIMKKEKEEGIek 275
Cdd:cd24132   156 VGNCLDRFARVLKLSNDP-----SPGYNIEQLAKKGKKLI-----ELPYTvKGMDVSFSGILSYIEKLAKKKLKKGEC-- 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 276 gqilsSAADIAATVQHTMACHLVKRTHRAILFCKQRDLLpqnnavLVasGGVASNFYIRRALEILTNATQCTLLCPPPRL 355
Cdd:cd24132   224 -----TPEDLCFSLQETVFAMLVEITERAMAHCGSKEVL------IV--GGVGCNLRLQEMMGIMAEERGGKLFATDERY 290
                         330
                  ....*....|....*....
gi 1774222017 356 CTDNGIMIAWNGIERLRAG 374
Cdd:cd24132   291 CIDNGAMIAQAGLLMFRSG 309
ASKHA_NBD_Kae1_TsaB-like cd24001
nucleotide-binding domain (NBD) of the Kae1/TsaB-like domain family; The family includes tRNA ...
39-183 1.43e-26

nucleotide-binding domain (NBD) of the Kae1/TsaB-like domain family; The family includes tRNA N6-adenosine threonylcarbamoyltransferase Kae1/TsaD, tRNA threonylcarbamoyladenosine biosynthesis protein TsaB (previously known as YeaZ), as well as proteins from the NodU/CmcH subfamily. tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. TsaB is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It may be involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaE. TsaB seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD. The NodU/CmcH family includes NodU from Rhizobium, CmcH from Amycolatopsis lactamdurans, the bifunctional carbamoyltransferase TobZ from Streptoalloteichus tenebrarius, NovN from Streptomyces niveus and NolNO from Sinorhizobium fredii. NodU is a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. 3'-hydroxymethylcephem-O-carbamoyltransferase CmcH (EC 2.1.3.7) is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity. nebramycin 5' synthase TobZ (EC 6.1.2.2) functions as an ATP carbamoyltransferase and tobramycin carbamoyltransferase. Novobiocin biosynthesis protein NovN (EC 2.1.3.12) acts as a carbamoyltransferase that mediates 3'-carbamoylation of the noviosyl ring to produce novobiocin, the final step in the novobiocin biosynthesis pathway. nodulation protein NolNO (EC 2.1.3.-) is involved in the O-carbamoylation of nod factors. The NodU/CmcH subfamily proteins consist of two domains. Only the N-terminal domain shows similarity with Kae1/TsaB-like domain, which belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily of phosphotransferases, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466851 [Multi-domain]  Cd Length: 186  Bit Score: 105.23  E-value: 1.43e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDEtGNVLgeAIHSQTEVHLKTGGIVPPAAQQlHRENIQRIVQEALSASGVSPSDLSAIATTIKP 118
Cdd:cd24001     1 VLGIEGSAEDTGVAIVDD-GGVL--ANHFETYVTEKTGGYPPEAARH-HARRIVPLIQEALAESGLTLDDIDAIAFGRGP 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1774222017 119 GLALSLGVGLSFSLQLVGQLKKPFIPIHHMEAHALTIRLTNKvEFPFLVLLISGGHCLLALVQGV 183
Cdd:cd24001    77 GLGGALRVGATVARGLALAWDKPLIGVNHCIAHAEIAKLKTG-ATRPVALIVSGGNTQVIAYELV 140
ASKHA_NBD_TsaB cd24032
nucleotide-binding domain (NBD) of tRNA threonylcarbamoyladenosine biosynthesis protein TsaB ...
39-145 1.75e-08

nucleotide-binding domain (NBD) of tRNA threonylcarbamoyladenosine biosynthesis protein TsaB (previously known as YeaZ) and similar proteins; TsaB, also called t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaB, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It may be involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaE. TsaB seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD. In fact, it can act as a protease that specifically degrades TsaD in vitro; therefore, TsaB may post-translationally regulate cellular pools of TsaD via proteolytic degradation. TsaB does not show sialoglycoprotease activity against glycophorin A.


Pssm-ID: 466882 [Multi-domain]  Cd Length: 205  Bit Score: 54.21  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  39 VLGIETSCDDTAAAVVDEtGNVLGEAIHSQTEVHlktggivppaaqqlhrenIQRI---VQEALSASGVSPSDLSAIATT 115
Cdd:cd24032     1 ILAIDTSTSACSVALLKG-GKILAEYELDLGRRH------------------SERLlpmIDELLKEAGLSLKDLDAIAVG 61
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1774222017 116 IKPG------LALSLGVGLSFSlqlvgqLKKPFIPI 145
Cdd:cd24032    62 IGPGsftglrIGLATAKGLALA------LGIPLVGV 91
TsaB COG1214
tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal ...
38-150 4.25e-06

tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine modification protein TsaB is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440827  Cd Length: 227  Bit Score: 47.54  E-value: 4.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  38 IVLGIETSCDDTAAAVVDEtGNVLGEAIHsqtevhlktggivppAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIK 117
Cdd:COG1214     2 LILAIDTSTEACSVALLDD-GEVLAEREE---------------NDGRGHSERLLPMIDELLAEAGLTLSDLDAIAVGIG 65
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1774222017 118 PG------LALSLGVGLSFSlqlvgqLKKPFIPIHHMEA 150
Cdd:COG1214    66 PGsftglrIGVATAKGLALA------LGIPLVGVSSLEA 98
BcrAD_BadFG pfam01869
BadF/BadG/BcrA/BcrD ATPase family; This family includes the BadF and BadG proteins that are ...
40-209 3.79e-04

BadF/BadG/BcrA/BcrD ATPase family; This family includes the BadF and BadG proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. The protein Swiss:O66634 contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370.


Pssm-ID: 396441 [Multi-domain]  Cd Length: 271  Bit Score: 41.96  E-value: 3.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  40 LGIETSCDDTAAAVVDETGNVLGEAIhsqtevhlKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIkPG 119
Cdd:pfam01869   1 LGIDGGSTKTKAVLMDDDGEVLGRAI--------AGSANFESVGVEAAERNLKDAITEALEEAGLKLDDIEYMFLGL-TG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017 120 LALSlGVGLSFSLQlvgqlkkpfIPIHHMEAHALTIR-LTNKVEFPFLVLLISGGHCLLALVQG--VSDFLLLGKSLDiA 196
Cdd:pfam01869  72 YGRA-GVDGHFGKD---------IVREEITVHADGAVaLAPGTRGEDGVIDIGGTGSKVIGLDGgkVVRFGGNGQCAG-G 140
                         170
                  ....*....|...
gi 1774222017 197 PGDMLDKVARRLS 209
Cdd:pfam01869 141 EGSFLEIAARALG 153
XylB COG1070
Sugar (pentulose or hexulose) kinase [Carbohydrate transport and metabolism]; Sugar (pentulose ...
37-115 7.97e-03

Sugar (pentulose or hexulose) kinase [Carbohydrate transport and metabolism]; Sugar (pentulose or hexulose) kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 440688 [Multi-domain]  Cd Length: 494  Bit Score: 38.27  E-value: 7.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1774222017  37 KIVLGIE---TSCDdtaAAVVDETGNVLGEAIHSqTEVHLKTGGIVPPAAQQLhRENIQRIVQEALSASGVSPSDLSAIA 113
Cdd:COG1070     1 KYVLGIDigtTSVK---AVLFDADGEVVASASAE-YPLSSPHPGWAEQDPEDW-WEAVVEAIRELLAKAGVDPEEIAAIG 75

                  ..
gi 1774222017 114 TT 115
Cdd:COG1070    76 VS 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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