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Conserved domains on  [gi|1737620033|ref|NP_001361083|]
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spermatogenesis associated 6-like protein isoform 4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPATA6 super family cl20796
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 1-77 5.83e-34

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


The actual alignment was detected with superfamily member pfam14909:

Pssm-ID: 464365  Cd Length: 139  Bit Score: 121.56  E-value: 5.83e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737620033   1 MRFVKVFEEAIDPGAVAELLET--------------WEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIA 66
Cdd:pfam14909  49 FRFEKTFKEAVDPAEVADLLEDetivieliqlvppvGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIA 128

                          90
                  ....*....|.
gi 1737620033  67 PKIEFSTRTAI 77
Cdd:pfam14909 129 PKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 1-77 5.83e-34

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 121.56  E-value: 5.83e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737620033   1 MRFVKVFEEAIDPGAVAELLET--------------WEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIA 66
Cdd:pfam14909  49 FRFEKTFKEAVDPAEVADLLEDetivieliqlvppvGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIA 128

                          90
                  ....*....|.
gi 1737620033  67 PKIEFSTRTAI 77
Cdd:pfam14909 129 PKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 1-77 5.83e-34

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 121.56  E-value: 5.83e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737620033   1 MRFVKVFEEAIDPGAVAELLET--------------WEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIA 66
Cdd:pfam14909  49 FRFEKTFKEAVDPAEVADLLEDetivieliqlvppvGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIA 128

                          90
                  ....*....|.
gi 1737620033  67 PKIEFSTRTAI 77
Cdd:pfam14909 129 PKLEFSTKTTI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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