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Conserved domains on  [gi|1700198628|ref|NP_001358279|]
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carbohydrate deacetylase isoform 2 [Homo sapiens]

Protein Classification

polysaccharide deacetylase family protein( domain architecture ID 79029)

metal-dependent polysaccharide deacetylase family protein, belonging to the carbohydrate esterase 4 (CE4) superfamily, may catalyze the N- or O-deacetylation of a substrate such as acetylated chitin, peptidoglycan, and acetylated xylan

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GH38-57_N_LamB_YdjC_SF super family cl49606
Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein ...
 7-142 5.56e-89

Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins; The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily.


The actual alignment was detected with superfamily member cd10806:

Pssm-ID: 483946  Cd Length: 280  Bit Score: 260.34  E-value: 5.56e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIPTGLHANLSEGRPVGPARRGASSLLGPE 86
Cdd:cd10806     1 KLVVNADDFGYCPQRNRGIVECFLAGVVTSVSLLVNGSSAEDAAKLAKRHNIPIGLHLNLTEGRPVSDELRGVSSLLGKD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  87 GFFLGKMGFREAVAAGDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLPG 142
Cdd:cd10806    81 GFFLGKMGFREALKQGDIDMSEVRIEIRAQIAWFIELLGRLPTHVDGHQHVHVLPG 136
 
Name Accession Description Interval E-value
YdjC_like_2 cd10806
uncharacterized YdjC-like family proteins from eukaryotes; This eukaryotic subfamily contains ...
 7-142 5.56e-89

uncharacterized YdjC-like family proteins from eukaryotes; This eukaryotic subfamily contains hypothetical and uncharacterized proteins, and belongs to the YdjC-like family of uncharacterized proteins. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212117  Cd Length: 280  Bit Score: 260.34  E-value: 5.56e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIPTGLHANLSEGRPVGPARRGASSLLGPE 86
Cdd:cd10806     1 KLVVNADDFGYCPQRNRGIVECFLAGVVTSVSLLVNGSSAEDAAKLAKRHNIPIGLHLNLTEGRPVSDELRGVSSLLGKD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  87 GFFLGKMGFREAVAAGDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLPG 142
Cdd:cd10806    81 GFFLGKMGFREALKQGDIDMSEVRIEIRAQIAWFIELLGRLPTHVDGHQHVHVLPG 136
YdjC pfam04794
YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the ...
 7-142 1.59e-48

YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.


Pssm-ID: 461430  Cd Length: 187  Bit Score: 154.28  E-value: 1.59e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIpTGLHANLSEGRPVGPaRRGASSLLGPE 86
Cdd:pfam04794   1 RLIINADDFGLSPGVNRAIIELLEAGILTSTSLMVNGPAAPEAAALAKAAPA-LGLHLTLTSGKPLLP-PEEVPSLVDED 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  87 GFFlgkmgFREAVAAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLPG 142
Cdd:pfam04794  79 GRF-----FGFRYLLRRLDLAEVEREIRAQIERFLD-LGLPPDHVDGHQHVHVLPG 128
ChbG COG3394
Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism] ...
 6-142 1.56e-44

Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism];


Pssm-ID: 442621  Cd Length: 271  Bit Score: 147.00  E-value: 1.56e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   6 MRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGPARRgASSLLG 84
Cdd:COG3394     1 KKLIVNADDFGLSPGVNEAIIEAHREGILTSTSLMVNGPAFPEAAALARENpGLDVGLHLTLTSGRPLTPPEE-VPSLVD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1700198628  85 PEGFFLGKMG-FREAVAAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLPG 142
Cdd:COG3394    80 EDGRFFPSLGrLGVRAFLGRADLDEVEAELRAQIERFLA-AGLPPTHLDSHQHVHLHPG 137
PRK02134 PRK02134
chitin disaccharide deacetylase;
6-141 8.55e-34

chitin disaccharide deacetylase;


Pssm-ID: 235007  Cd Length: 249  Bit Score: 118.51  E-value: 8.55e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   6 MRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGPARrgasSLLG 84
Cdd:PRK02134    3 RLLIVNADDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYpSLGVGMHFVLTAGKPLTAMP----SLTD 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1700198628  85 PEGFFlGKMgFREAVAAGDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLP 141
Cdd:PRK02134   79 RDGLL-GKW-IWQLAEEGTLPLEEIAQELAAQYERFLSLFGRKPTHLDSHHHVHMLP 133
 
Name Accession Description Interval E-value
YdjC_like_2 cd10806
uncharacterized YdjC-like family proteins from eukaryotes; This eukaryotic subfamily contains ...
 7-142 5.56e-89

uncharacterized YdjC-like family proteins from eukaryotes; This eukaryotic subfamily contains hypothetical and uncharacterized proteins, and belongs to the YdjC-like family of uncharacterized proteins. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212117  Cd Length: 280  Bit Score: 260.34  E-value: 5.56e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIPTGLHANLSEGRPVGPARRGASSLLGPE 86
Cdd:cd10806     1 KLVVNADDFGYCPQRNRGIVECFLAGVVTSVSLLVNGSSAEDAAKLAKRHNIPIGLHLNLTEGRPVSDELRGVSSLLGKD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  87 GFFLGKMGFREAVAAGDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLPG 142
Cdd:cd10806    81 GFFLGKMGFREALKQGDIDMSEVRIEIRAQIAWFIELLGRLPTHVDGHQHVHVLPG 136
YdjC pfam04794
YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the ...
 7-142 1.59e-48

YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.


Pssm-ID: 461430  Cd Length: 187  Bit Score: 154.28  E-value: 1.59e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIpTGLHANLSEGRPVGPaRRGASSLLGPE 86
Cdd:pfam04794   1 RLIINADDFGLSPGVNRAIIELLEAGILTSTSLMVNGPAAPEAAALAKAAPA-LGLHLTLTSGKPLLP-PEEVPSLVDED 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  87 GFFlgkmgFREAVAAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLPG 142
Cdd:pfam04794  79 GRF-----FGFRYLLRRLDLAEVEREIRAQIERFLD-LGLPPDHVDGHQHVHVLPG 128
ChbG COG3394
Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism] ...
 6-142 1.56e-44

Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism];


Pssm-ID: 442621  Cd Length: 271  Bit Score: 147.00  E-value: 1.56e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   6 MRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGPARRgASSLLG 84
Cdd:COG3394     1 KKLIVNADDFGLSPGVNEAIIEAHREGILTSTSLMVNGPAFPEAAALARENpGLDVGLHLTLTSGRPLTPPEE-VPSLVD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1700198628  85 PEGFFLGKMG-FREAVAAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLPG 142
Cdd:COG3394    80 EDGRFFPSLGrLGVRAFLGRADLDEVEAELRAQIERFLA-AGLPPTHLDSHQHVHLHPG 137
YdjC_like cd10788
YdjC-family proteins; YdjC-family proteins are widely distributed, from human to bacteria. It ...
 8-142 2.92e-43

YdjC-family proteins; YdjC-family proteins are widely distributed, from human to bacteria. It is represented by an uncharacterised protein YdjC (also known as ChbG), encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. This subfamily also includes hopanoid biosynthesis associated proteins HpnK and many uncharacterized YdjC homologs. Although the exact molecular function of the YdjC-family proteins remains unclear, it has been suggested that they play a role in the cleavage of cellobiosephosphate.


Pssm-ID: 212100 [Multi-domain]  Cd Length: 243  Bit Score: 142.93  E-value: 2.92e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   8 LVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARR-HSIPTGLHANLSEGRPVgPARRGASSLLGPE 86
Cdd:cd10788     1 LILNADDFGLTHAVNEGIIDAHRNGRLTSTSLMVNSPASAEAAALAKRnPRLDLGLHLNLTEGQPL-TPPAKSPSLLDEA 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  87 GFFLGKMGFREAVaAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLPG 142
Cdd:cd10788    80 GRFKSSPIFRRSF-EGKLNAAEVRKEIEAQIDRFKE-LGRTPDHIDSHHHVHVLPV 133
YdjC_EF3048_like cd10803
Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative ...
 7-141 1.86e-37

Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative cellobiose-phosphate cleavage protein EF3048 from Enterococcus faecalis v583. It is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. EF3048 might function as a homodimer. Each of the monomers consists of a (beta/alpha)-barrel fold that forms an active homodimer. The molecular function of the EF3048 is unclear.


Pssm-ID: 212114  Cd Length: 228  Bit Score: 127.29  E-value: 1.86e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGParrGASSLLGP 85
Cdd:cd10803     1 KLIVNADDFGLTKGVNYGIIEAHRNGVVTSTTLMVNMPGFEHAVELAKENpGLGVGVHLTLTCGKPLLD---DVPSLVDE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1700198628  86 EGFFLGKmgfREAVAAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLP 141
Cdd:cd10803    78 DGNFRKQ---SDYEGEGEIDPEEVYREWKAQIEKFLA-LGLKPTHLDSHHHVHTHP 129
YdjC cd10808
Escherichia coli YdjC-like family of proteins; Uncharacterized subfamily of YdjC-like family ...
 7-142 4.34e-35

Escherichia coli YdjC-like family of proteins; Uncharacterized subfamily of YdjC-like family of proteins. Included in this subfamily is the uncharacterized Escherichia coli protein YdjC (also known as ChbG), encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212119  Cd Length: 259  Bit Score: 122.37  E-value: 4.34e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGPARRGaSSLLGP 85
Cdd:cd10808     1 RLIVNADDFGLHPGVNRAILEAHRAGIVTSTTLMAGGPAFDDAVALARENpGLGVGVHLTLVGGLPVVPPAEI-PSLVDE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1700198628  86 EGFFLGK-MGFREAVAAGDVDLPQVREELEAQLSCFRElLGRAPTHADGHQHVHVLPG 142
Cdd:cd10808    80 DGVFLRSyLAFAKRLLTGRIRLSEVERELRAQIERVLD-AGIRPTHLDSHQHTHVLPG 136
PRK02134 PRK02134
chitin disaccharide deacetylase;
6-141 8.55e-34

chitin disaccharide deacetylase;


Pssm-ID: 235007  Cd Length: 249  Bit Score: 118.51  E-value: 8.55e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   6 MRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGPARrgasSLLG 84
Cdd:PRK02134    3 RLLIVNADDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYpSLGVGMHFVLTAGKPLTAMP----SLTD 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1700198628  85 PEGFFlGKMgFREAVAAGDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLP 141
Cdd:PRK02134   79 RDGLL-GKW-IWQLAEEGTLPLEEIAQELAAQYERFLSLFGRKPTHLDSHHHVHMLP 133
YdjC_like_1 cd10805
uncharacterized YdjC-like family proteins from bacteria; The subfamily contains many ...
 7-134 1.05e-28

uncharacterized YdjC-like family proteins from bacteria; The subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212116  Cd Length: 251  Bit Score: 105.37  E-value: 1.05e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHS-IPTGLHANLSEGRPVGPARRgASSLLGP 85
Cdd:cd10805     1 KLLVRADDLGYSEGVNYGILKAVRNGIVRSTGLMVNMPAAEHALELIKDYPdVCLGLHTNIVLGKPLSDPEL-IPSLVDE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1700198628  86 EGFFLGKMGFREAVAAGD--VDLPQVREELEAQLSCFRELLGRAPTHADGH 134
Cdd:cd10805    80 NGEFKSSKEYRAELAEGEdfVNYEEVYLEIEAQVERFIELVGRKPDYIEGH 130
YdjC_like_3 cd10807
uncharacterized YdjC-like family proteins from bacteria; This subfamily contains many ...
 8-142 3.81e-27

uncharacterized YdjC-like family proteins from bacteria; This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212118  Cd Length: 251  Bit Score: 101.53  E-value: 3.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   8 LVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHS--IPTGLHANLSEGRPvgparrgassLLGP 85
Cdd:cd10807     1 IILCADDFGLSPGVSAAILDLAEAGRLSATSCMVNGPAWPEAAAALRPLRgrADIGLHLNLTEGFP----------LLAP 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628  86 EGFFLGkmgFREAVAA---GDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLPG 142
Cdd:cd10807    71 GGLLPP---LGRLLLRsllGRLDRAAIRAEIEAQLDAFEEAFGRAPDFVDGHQHVHQLPV 127
YdjC_TTHB029_like cd10802
Thermus thermophiles TTHB029 and similar proteins; This subfamily is represented by an ...
 7-134 1.97e-24

Thermus thermophiles TTHB029 and similar proteins; This subfamily is represented by an YdjC-family protein TTHB029 from Thermus thermophilus HB8; it is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. TTHB029 functions as a homodimer. Each of monomer consists of (beta/alpha)-barrel fold. The molecular function of TTHB029 is unclear.


Pssm-ID: 212113  Cd Length: 251  Bit Score: 94.29  E-value: 1.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANL-SE-----GRPVGPaRRGA 79
Cdd:cd10802     2 LLIIHADDFGMSHSANEAIIELLEEGIVSSASVMVPCPWFPEAAAYAAANpEIDVGLHLTLtSEwdnyrWGPLTP-KEQV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1700198628  80 SSLLGPEGFFLGKmgfREAVAAgDVDLPQVREELEAQLSCFRElLGRAPTHADGH 134
Cdd:cd10802    81 PSLVDEEGYFPPD---VAELEA-NADPDEVEKELRAQIERALK-AGIRPTHLDSH 130
YdjC_HpnK_like cd10804
hopanoid biosynthesis associated protein HpnK and similar proteins; The subfamily includes ...
 7-141 1.31e-23

hopanoid biosynthesis associated protein HpnK and similar proteins; The subfamily includes some uncharacterized proteins annotated as hopanoid biosynthesis associated proteins, HpnK. They show high sequence similarity to proteins from the YdjC-family, the latter is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source.


Pssm-ID: 212115  Cd Length: 261  Bit Score: 92.31  E-value: 1.31e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1700198628   7 RLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRH-SIPTGLHANLSEGRPVGPARRgASSLLGP 85
Cdd:cd10804     1 RLIVTADDFGLSHEVNEAVEQAHREGILTSASLMVGGPAADDAVARARRLpGLGVGLHLVLVEGRSVLPPEE-IPDLVDA 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1700198628  86 EGFF---LGKMGFR----EAVAAgdvdlpQVREELEAQLSCFRElLGRAPTHADGHQHVHVLP 141
Cdd:cd10804    80 QGRFpsdPVRAGFRyffsPAARR------QLRAEIRAQFEAFRA-TGLPLDHVDGHKHFHLHP 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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