|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
3.97e-24 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 102.56 E-value: 3.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 89 KKLTKQDNLALIKSL-------NlslskdggkKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 162 IEGIENMCNLQKLNLAGNEIEhipvwLGKKL-----------KSLRVLNLKGNKISSLQDISKLKPLQDLI--------- 221
Cdd:cd21340 83 VEGLENLTNLEELHIENQRLP-----PGEKLtfdprslaalsNSLRVLNISGNNIDSLEPLAPLRNLEQLDasnnqisdl 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 222 --------------SLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 158 eelldllsswpslrELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-345 |
7.90e-22 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 100.39 E-value: 7.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 173 KLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQDISKLKPLQdliSLILVENPVVTLPHYLQFTifHLRSLeSLEG 252
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLTNLE---ELDLSNNQLTDLPPLANLT--NLKTL-DLSN 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 253 QPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKN 332
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
250
....*....|...
gi 1622996213 333 ELLKQKTIELTRA 345
Cdd:COG4886 362 LLTLLLTLGLLGL 374
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
435-1058 |
1.96e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 101.94 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAgkdllykQLSGRLQLVNKLRQEALD 514
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA-------RLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEEL-------------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 595 LEEQLTEGQIAANEALKKDLEgvisglqeylgtIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMR 674
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEE------------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEE---EALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 675 KELAELESALQEQHEVNASLQQTQgdlsAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNA 754
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEA----ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 755 LGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLV--RPEEVAARVDELRRKLKLGTGEMNIHSP 832
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 833 SDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQM 912
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 913 ENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATA 992
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 993 ---ELTIAKDQLKSLhGTVmkiNQERAEELQEA-ERFSRKAAQAArDLTRAEAEIELL-QNLLRQKGEQFR 1058
Cdd:COG1196 765 lerELERLEREIEAL-GPV---NLLAIEEYEELeERYDFLSEQRE-DLEEARETLEEAiEEIDRETRERFL 830
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
443-1123 |
7.37e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.01 E-value: 7.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 443 EKKISAAQTRLSELHDEIEKAEQQI--L----RATEEFKQLEEAIQLKKISEAGkdLLYKQLSGRLQlvnKLRQEALDLE 516
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLepLerqaEKAERYRELKEELKELEAELLL--LKLRELEAELE---ELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 517 LQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 596
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEEL-----------------ELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 597 EQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaENMRKE 676
Cdd:COG1196 316 ERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALG 756
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 757 KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHspsdvl 836
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG-------FLEGVKAALLLAGLRGLAGAVAVLIG------ 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 837 gksladlqkqfseilarskWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFdkrqhEARIQQMENEI 916
Cdd:COG1196 532 -------------------VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-----LPLDKIRARAA 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 917 HYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVfgldkelkklkkAVATSDKLATAELTI 996
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV------------TLAGRLREVTLEGEG 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 997 AKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEmektgvgtgansqVLE 1076
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE-------------ELE 722
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1622996213 1077 IEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREV 1123
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
3.30e-19 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 92.30 E-value: 3.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 55 QVEIADENNMLLDYQDHKGADSHAGVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 135 NLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQD-I 211
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEpL 201
|
170 180 190
....*....|....*....|....*....|....*....
gi 1622996213 212 SKLKPLQdliSLILVENPVVTLPHylqfTIFHLRSLESL 250
Cdd:COG4886 202 GNLTNLE---ELDLSGNQLTDLPE----PLANLTNLETL 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-1119 |
1.27e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.81 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 437 TQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI-----QLKKISEAGKDLLYKQLSGRLQLVnKLRQE 511
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleqQKQILRERLANLERQLEELEAQLE-ELESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 512 ALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEE 591
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 592 IKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAE 671
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDaeanqlKEELEKVTRLTQLEQSALQAELEKERQAL 751
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE------GYEAAIEAALGGRLQAVVVENLNAAKKAI 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 752 ----KNALGKAQFSEE---KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGT 824
Cdd:TIGR02168 563 aflkQNELGRVTFLPLdsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLR 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 825 GEMNIHSPSDVL---------GKSLADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERAL 894
Cdd:TIGR02168 643 PGYRIVTLDGDLvrpggvitgGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 895 EAR-----MNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKLEDAKSQEQV 969
Cdd:TIGR02168 723 ELSrqisaLRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIEQLKEELKA 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 970 FGLDKELKKLKKAvATSDKLATAELTIA--KDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQ 1047
Cdd:TIGR02168 801 LREALDELRAELT-LLNEEAANLRERLEslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 1048 NLLRQKGEQF-RLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTgsdnKGGFENVLEEIAEL 1119
Cdd:TIGR02168 880 NERASLEEALaLLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
509-821 |
1.10e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 509 RQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ---LRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 589 TEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIV 666
Cdd:TIGR02168 753 SKELTELEAEIEEleERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 667 AMDAENMRKELAE-LESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEkvtRLTQLEQSalQAELE 745
Cdd:TIGR02168 833 IAATERRLEDLEEqIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS---ELEELSEE--LRELE 907
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996213 746 KERQALKNALGKAQFSEEKEQEN-SELHAKLKHLQDdnNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLK 821
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRlEGLEVRIDNLQE--RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
255-1044 |
2.05e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.41 E-value: 2.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 255 VTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNEL 334
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 335 LKQKTIELTRACQKQYELEQELAfyKIDAKFeplnyypsEYAEIDkapdespyigKSRYKRNMFATESYIIDSAQAVQIK 414
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIA--SLNNEI--------ERLEAR----------LERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 415 KMEPDEqlrndhmnlRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI--------QLKKI 486
Cdd:TIGR02168 434 ELKELQ---------AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdslerlqeNLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 487 SEAGKDLLYKQ--LSGRLQLVNKLRQEALDLELQMEKQKQEIAGkQKEIKDLQIA---IDSLDSKDPKHSHMKAQKSGKE 561
Cdd:TIGR02168 505 SEGVKALLKNQsgLSGILGVLSELISVDEGYEAAIEAALGGRLQ-AVVVENLNAAkkaIAFLKQNELGRVTFLPLDSIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 562 QQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL-------TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQ 634
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 635 AQNEcrklrdEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEqhevnasLQQTQGDLSAYEAELEARLNL 714
Cdd:TIGR02168 664 GSAK------TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISA 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 715 RDAEANQLKEELEKVTRLTQLEQSALqAELEKERQALKNALGKAQFS-EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKEL-TELEAEIEELEERLEEAEEElAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 794 nhlnhvvdglvrpeevaARVDELRRKL-KLGTGEMNIHSPSDVLGKSLADLQKQF---SEILARSKWERDEAQVRERKLQ 869
Cdd:TIGR02168 810 -----------------AELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELE 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 870 EEMALQQEKLATGQEEFRQAceralearmNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILA 949
Cdd:TIGR02168 873 SELEALLNERASLEEALALL---------RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 950 QLRElEKKKKLEDAKSQEQvfgldkelkklkkAVATSDKLATAELTIAKDQLKSLhGTVmkiNQERAEELQE-AERFSRK 1028
Cdd:TIGR02168 944 RLSE-EYSLTLEEAEALEN-------------KIEDDEEEARRRLKRLENKIKEL-GPV---NLAAIEEYEElKERYDFL 1005
|
810
....*....|....*.
gi 1622996213 1029 AAQAArDLTRAEAEIE 1044
Cdd:TIGR02168 1006 TAQKE-DLTEAKETLE 1020
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
583-963 |
1.56e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 583 SRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 660
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 661 DQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVT-RLTQL 735
Cdd:TIGR02168 757 TELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLErRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 736 EQSALQAELEKERQALKNALGKAQFSEEKEQENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDE 815
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 816 LRRKLKLgtgemnihspsdvlgksladLQKQFSEILARskweRDEAQVRERKLQEEMALQQEKLATGQEEfrqaceraLE 895
Cdd:TIGR02168 913 LRRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 896 ARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEEiqgltdlqLQEADEEKERILAQLRELEK-KKKLEDA 963
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPvNLAAIEE--------YEELKERYDFLTAQKEDLTEaKETLEEA 1022
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
6.68e-14 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 71.72 E-value: 6.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 209 QDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
430-953 |
9.09e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 9.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 430 RGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLR 509
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE----------AELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 510 QEALDLELQMEKQKQEIAGKQKEIKDLQiaidsldskdpkhshmkaqksgkeqqldimnKQYQQLESRLDEILSRIAKET 589
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELA-------------------------------AQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 590 EEIKDLEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMD 669
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEE-----AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 670 AENMRKELAELESALQEQHEVNAS------LQQTQGDLSAYEAELEARLNLRDAEANQLKEElekvtRLTQLEQSALQAE 743
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLrglagaVAVLIGVEAAYEAALEAALAAALQNIVVEDDE-----VAAAAIEYLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 744 LEKERQALKNALGKAQFSEEKEQENSELHAKLKhLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLG 823
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDL-VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 824 TGEMNIHSPsdvlGKSLADLQKQFSEILARSKwERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKR 903
Cdd:COG1196 650 TLEGEGGSA----GGSLTGGSRRELLAALLEA-EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1622996213 904 QHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRE 953
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
443-1060 |
3.50e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 74.95 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkISEAGKDllYKQLSGRLQlvnklRQEALDLELQMEKQ 522
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIELLEP------IRELAER--YAAARERLA-----ELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 523 KQEIAGKQKEIKDLQIAIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEIlsriakETEEIKDLEEqlteg 602
Cdd:COG4913 287 QRRLELLEAELEELRAELARLE----------AELERLEARLDALREELDELEAQIRGN------GGDRLEQLER----- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNE----CRKLRDEKETLLQRLTEVEQERDQLEIvamDAENMRKELA 678
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEA---ALRDLRRELR 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 679 ELESALqeqhevnASLQQTQGDLSAYE----AELEARLNLRDAEAN------QLKEE-------LEKV---TRLTQLeqs 738
Cdd:COG4913 423 ELEAEI-------ASLERRKSNIPARLlalrDALAEALGLDEAELPfvgeliEVRPEeerwrgaIERVlggFALTLL--- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 739 alqAELEKERQALK--NAL---GKAQFSEEKEQENSELHAKLkhlqDDNNLL-KQQLKD--FQNHLNHVvdgLVRPEEVA 810
Cdd:COG4913 493 ---VPPEHYAAALRwvNRLhlrGRLVYERVRTGLPDPERPRL----DPDSLAgKLDFKPhpFRAWLEAE---LGRRFDYV 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 811 --ARVDELRR-----------KLKLGTGEMNIHSPSD---VLGKS----LADLQKQfseiLARSKWERDEAQVRERKLQE 870
Cdd:COG4913 563 cvDSPEELRRhpraitragqvKGNGTRHEKDDRRRIRsryVLGFDnrakLAALEAE----LAELEEELAEAEERLEALEA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 871 EMALQQEKlatgqeefRQACERALEARMNF-DKRQHEARIQQMENEihyLQENLKSMEEIQGLTDlQLQEADEEKERILA 949
Cdd:COG4913 639 ELDALQER--------REALQRLAEYSWDEiDVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 950 QLRELEKK-----KKLEDAKSQEQvfgldkelkklkkavATSDKLATAELTIAKDQLKSLhgtvmkinQERAEELQEAER 1024
Cdd:COG4913 707 ELDELKGEigrleKELEQAEEELD---------------ELQDRLEAAEDLARLELRALL--------EERFAAALGDAV 763
|
650 660 670
....*....|....*....|....*....|....*.
gi 1622996213 1025 FSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1060
Cdd:COG4913 764 ERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1349-1670 |
6.07e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 6.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1349 KRQSEKEMEELHHN---IDDLLQEK----KSLE--CEVEELHRTVQKRQQQKDfidgnveSLMTELEIEKSLKHHEDIVD 1419
Cdd:COG1196 174 KEEAERKLEATEENlerLEDILGELerqlEPLErqAEKAERYRELKEELKELE-------AELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1420 EIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLR 1499
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1500 SLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKR 1579
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1580 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGEL 1659
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330
....*....|.
gi 1622996213 1660 NVQISERKTQL 1670
Cdd:COG1196 487 AEAAARLLLLL 497
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
6.10e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 73.04 E-value: 6.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 83 ITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 163 EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQdiSKLKPLQDLISLILVENPVVTLPHylqfTIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 1622996213 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1320-1610 |
6.23e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 6.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1320 NLEnevsRLEDIM----QHLKSKKRE----ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQK 1391
Cdd:COG1196 187 NLE----RLEDILgeleRQLEPLERQaekaERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1392 DFIDGNVESLMTEL-----EIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDA 1466
Cdd:COG1196 263 AELEAELEELRLELeelelELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1467 KRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1546
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 1547 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEEL 1610
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1362-1627 |
1.49e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1362 NIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEiekslkhheDIVDEIECIEKTLLKRRSELREADRL 1441
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE---------ELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1442 LAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKE 1521
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1522 INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDR 1601
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260
....*....|....*....|....*.
gi 1622996213 1602 QLGHKKEELHLLQGSMVQAKADLQEA 1627
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGL 934
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
275-1019 |
4.79e-12 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 71.62 E-value: 4.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 275 LERDLEKKMIETEELKSKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELtracqKQYELEQ 354
Cdd:TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSDRI---LELDQELRKAERELSKAEKNSLTETLKKEVKSL-----QNEKADL 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 355 ELAFYKIDAKFEPLNYYPSEYAEI-----DKA-PDESPYIGKSRYKRNM------FATESYIIDSAQAVQIKKMEPDEQL 422
Cdd:TIGR00606 514 DRKLRKLDQEMEQLNHHTTTRTQMemltkDKMdKDEQIRKIKSRHSDELtsllgyFPNKKQLEDWLHSKSKEINQTRDRL 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 423 RNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEI---EKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLS 499
Cdd:TIGR00606 594 AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 500 GRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH-MKAQKSGKEQQLDIMNKQYQQLESRL 578
Cdd:TIGR00606 674 DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDeMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 579 DEILSRIAKETEEIKDLEEQLteGQIAANEALKKDLE---GVISGLQEYLGTIKGQATQAQNECRKLrDEKETLLQRLTE 655
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLL--GTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS-DLDRTVQQVNQE 830
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 656 VEQERDQLEIVAMDAENMRKelaelesALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVtrltql 735
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNRK-------LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV------ 897
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 736 eQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEvaarvDE 815
Cdd:TIGR00606 898 -QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD-----DY 971
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 816 LRRKlklgtgEMNIHSPSDVLGKSlADLQKQFSEILARSKWERDEAQVRERKLQEEMALQ--QEKLATGQEEFRQacera 893
Cdd:TIGR00606 972 LKQK------ETELNTVNAQLEEC-EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRkrENELKEVEEELKQ----- 1039
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 894 learmnFDKRQHEARIQQMENEIHYLQENLKSMEeiqgltdlqlqeadEEKERILAQLRELEKKKKLEDAKSQEQVFGLD 973
Cdd:TIGR00606 1040 ------HLKEMGQMQVLQMKQEHQKLEENIDLIK--------------RNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1622996213 974 KELKKLKKAVATSDKLATAELTIAKdqlKSLHGTVMKINQERAEEL 1019
Cdd:TIGR00606 1100 EEKYREMMIVMRTTELVNKDLDIYY---KTLDQAIMKFHSMKMEEI 1142
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
419-1138 |
5.94e-12 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 71.02 E-value: 5.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 419 DEQLRNDHMNLRGHTpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISeagKDLLYKQL 498
Cdd:pfam12128 229 DIQAIAGIMKIRPEF---TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRT---LDDQWKEK 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 499 SGRLqlvnKLRQEALDLELQMEKQKQEIAGKQKEI---KDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLE 575
Cdd:pfam12128 303 RDEL----NGELSAADAAVAKDRSELEALEDQHGAfldADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 576 SRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtikgqatQAQNECRKLRDEKETLLQRLTE 655
Cdd:pfam12128 379 RRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELRE----------QLEAGKLEFNEEEYRLKSRLGE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 656 VEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVTRL 732
Cdd:pfam12128 449 LKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKrrdQASEALRQASRRLEERQSALDELELQ 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 733 TQLEQSALQAELEKERQALKNALGKAQFSEekeqensELHAKLKHLQDDNNLLKQQLKDFQNHLNhvVDGLVRPEEVAAR 812
Cdd:pfam12128 529 LFPQAGTLLHFLRKEAPDWEQSIGKVISPE-------LLHRTDLDPEVWDGSVGGELNLYGVKLD--LKRIDVPEWAASE 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 813 vDELRRKLklgtgemnihspsDVLGKSL---ADLQKQFSEILARSKWERDEAQVRE---RKLQEEMALQQEKLATGQEEF 886
Cdd:pfam12128 600 -EELRERL-------------DKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 887 RQACERALEARmnfdKRQHEARIQQMENEIHYLQENLKSMEEIQgltDLQLQEADEEKeriLAQLRELEKKKKLEDAKSQ 966
Cdd:pfam12128 666 KDKKNKALAER----KDSANERLNSLEAQLKQLDKKHQAWLEEQ---KEQKREARTEK---QAYWQVVEGALDAQLALLK 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 967 EQVFGLDKELKKLKKAVATS-----DKLATAELTIAK--DQLKSLHGTVMKINQERAEELQ----EAERFSRKAAQAARD 1035
Cdd:pfam12128 736 AAIAARRSGAKAELKALETWykrdlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQ 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1036 LTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLeiEKLNETMERQRTEIARLQNV-LDLTGSDNKGGFENVLE 1114
Cdd:pfam12128 816 LSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQ--VRLSENLRGLRCEMSKLATLkEDANSEQAQGSIGERLA 893
|
730 740
....*....|....*....|....
gi 1622996213 1115 EIAELRREVSYQNDYISSMADPFK 1138
Cdd:pfam12128 894 QLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
459-1076 |
1.22e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 459 EIEKAEQQILRATEEFKQLEEAiqlKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQI 538
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEA---KKAEEERNNEEIRKFEEARMAHFARRQAAIKAE---EARKADELKKAEEKKKADE 1294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 539 AIDSLDSKDPKHSHMKAQKSGKEQQLdimNKQYQQLESRLDEILSRI--AKETEEIKDLEEQLTEGQIAANEALKKDLEG 616
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKKAEEAKKADEA---KKKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 617 VISGLQEYLGTIKGQATQAQ--NECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKElAELESALQEQHEVNASL 694
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEAK 1450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 695 QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQ-LEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 773
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 774 KLKHLQDDNNLLKQQLKdfqnhlnhvVDGLVRPEEVaaRVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILAR 853
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKK---------ADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 854 SKWERDEAQVRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLT 933
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 934 DLQLQEaDEEKERILAQLRELEKKKKLEDAKSQEQvfgldkelkkLKKAVATSDKLATAELTIAKDQLKSLHgtvmKINQ 1013
Cdd:PTZ00121 1679 EAKKAE-EDEKKAAEALKKEAEEAKKAEELKKKEA----------EEKKKAEELKKAEEENKIKAEEAKKEA----EEDK 1743
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 1014 ERAEELQEAERFSRKAAQAARDLTRAEAEIE-----LLQNLLRQKGEQFRLEMEKTGVGTGANSQVLE 1076
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRkekeaVIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1317-1597 |
1.37e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1317 EHHNLENEVSRLEDIMQHLKSKKREERwmrASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidg 1396
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE---AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1397 nveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESD 1476
Cdd:COG1196 307 ------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1556
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1622996213 1557 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMA 1597
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-280 |
1.37e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 68.81 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKL 174
Cdd:COG4886 203 NLTNLEELDLS-----GNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 175 NLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQP 254
Cdd:COG4886 278 DLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357
|
170 180
....*....|....*....|....*.
gi 1622996213 255 VTTQDRQEAFERFSLEEVERLERDLE 280
Cdd:COG4886 358 LLSLLLTLLLTLGLLGLLEATLLTLA 383
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
515-799 |
2.75e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQKQEIAgKQKEIKDLQIAI--DSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEI 592
Cdd:TIGR02168 205 LERQAEKAERYKE-LKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 593 KDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIvamDAEN 672
Cdd:TIGR02168 284 EELQKELYALAN-----EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE---ELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 673 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE----KVTRLTQLEQSALQAELEKER 748
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErledRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 749 QALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHV 799
Cdd:TIGR02168 436 KELQAELEeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
258-821 |
3.42e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 258 QDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQ 337
Cdd:COG1196 284 EEAQAEEYE-LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 338 KTIELTRACQKQYELEQELafykidakfeplnyypseyaeidkapdespyigksrykrnmfatesyiidsaQAVQIKKME 417
Cdd:COG1196 363 AEEALLEAEAELAEAEEEL----------------------------------------------------EELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 418 PDEQLRNdhmnlrghtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQ 497
Cdd:COG1196 391 ALRAAAE----------LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 498 LsgrLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLD--SKDPKHSHMKAQKSGKEQQLDIM----NKQY 571
Cdd:COG1196 461 L---LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgfLEGVKAALLLAGLRGLAGAVAVLigveAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 572 QQLESRLDEILSRIAKETEEI-KDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLL 650
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 651 QRLTEVEQERDQlEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVT 730
Cdd:COG1196 618 LGDTLLGRTLVA-ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 731 RLTQLEQSALQAELEKERQALKNalgKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDfqnhlnhVVDGLVRPEEVA 810
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEE---ELEEEALEEQLEAEREELLEELLEEEELLEEEALE-------ELPEPPDLEELE 766
|
570
....*....|.
gi 1622996213 811 ARVDELRRKLK 821
Cdd:COG1196 767 RELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-959 |
4.25e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 4.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 259 DRQEAFERFSLEEVERLERDLEKKmIETEELKSKqtrfLEEIKNQDKLNKSLKEEAMLqkqscEELKSDLNTKNELLKQK 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA-ERYQALLKE----KREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 339 TIELTRACQKQYELEQELAfyKIDAKFEPLNyyPSEYAEIdKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEP 418
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE--ELNKKIKDLG--EEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 419 DEQLRNdhmnlrgHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL-EEAIQLKKISEAGKDLLY-- 495
Cdd:TIGR02169 332 DKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrDELKDYREKLEKLKREINel 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 496 -KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpKHSHMKAQKSGKEQQLDIMNKQYQQL 574
Cdd:TIGR02169 405 kRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW---KLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 575 ESRLDEILSRIAkETEEIKDLEEQLTEGQIAANEALKKDLEGVIsGLQEYLGTIKGQ----------------------- 631
Cdd:TIGR02169 482 EKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyataievaagnrlnnvvveddav 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 632 ATQAQNECRKLRDEKETLLQrLTEVEQERDQLEIVAMDA--------------------------------ENMRKELAE 679
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvediEAARRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 680 LESALQEQHEVNASLQQTQGDLSAYEAELEARLNLrdAEANQLKEELEKVTRltqlEQSALQAELEKERQALKnalgkaq 759
Cdd:TIGR02169 639 YRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP--AELQRLRERLEGLKR----ELSSLQSELRRIENRLD------- 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 760 fseEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRRKLKLGTGEMnihspsDVLGKS 839
Cdd:TIGR02169 706 ---ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----------EELEEDLSSLEQEIENVKSEL------KELEAR 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 840 LADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATgQEEFRQACERALEARmNFDKRQHEARIQQMENEIHY 918
Cdd:TIGR02169 767 IEELEEDLHKLeEALNDLEARLSHSRIPEIQAELSKLEEEVSR-IEARLREIEQKLNRL-TLEKEYLEKEIQELQEQRID 844
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1622996213 919 LQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 959
Cdd:TIGR02169 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-959 |
6.27e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 6.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 629 KGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYE-- 705
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 706 --------AELEARLNLRDAEANQLKEELEKVTRLTQLEQ----SALQAELEKERQALKNALGKAQFSEEKEQENSE-LH 772
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 773 AKLKHLQDDNNLLKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLK-LGTGEMNIHSPSDVLGKSLADLQKQFSEIl 851
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIE---NLNGKKEELEEELEELEAALRdLESRLGDLKKERDELEAQLRELERKIEEL- 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 852 arsKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACEralEARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEE-- 928
Cdd:TIGR02169 909 ---EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE---IPEEELSLEDVQAELQRVEEEIRALEPvNMLAIQEye 982
|
330 340 350
....*....|....*....|....*....|....*
gi 1622996213 929 --IQGLTDLQLQEA--DEEKERILAQLRELEKKKK 959
Cdd:TIGR02169 983 evLKRLDELKEKRAklEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
460-1124 |
1.45e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 460 IEKAEQQILRATEEFKQLEEaiQLKKIseagkDLLYKQLSGRLQLVNKLRQEALD-LELQMEKQKQEIAGKQKEIKDLQI 538
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEE--NIERL-----DLIIDEKRQQLERLRREREKAERyQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 539 AIDSLDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL--EEQLT-EGQIAANEALKKDLE 615
Cdd:TIGR02169 238 QKEAIE----------RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRvKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 616 GVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQEqheVNASLQ 695
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAELEE---VDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 696 QTQGDLSAYEAELEarlnlrdaeanQLKEELEKVTRltqlEQSALQAELEKerqalknalgkaqfseeKEQENSELHAKL 775
Cdd:TIGR02169 382 ETRDELKDYREKLE-----------KLKREINELKR----ELDRLQEELQR-----------------LSEELADLNAAI 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 776 KHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDELRRKLKlgtgemNIHSPSDVLGKSLADLQKQFSEILARSK 855
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELY------DLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 856 WERDEaqVRERKLQEEMALQQEKLATGQ--------EEFRQACERALEARMNFDKRQHEA-------------------- 907
Cdd:TIGR02169 501 ASEER--VRGGRAVEEVLKASIQGVHGTvaqlgsvgERYATAIEVAAGNRLNNVVVEDDAvakeaiellkrrkagratfl 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 908 ---RIQQMENEIHYLQE--------NLKSMEE------IQGLTDLQLQEADEEKERILAQLRELEKKKKLEDaKSQEQVF 970
Cdd:TIGR02169 579 plnKMRDERRDLSILSEdgvigfavDLVEFDPkyepafKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFE-KSGAMTG 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 971 GLDKELKKLKKAVATSDKLA--TAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQN 1048
Cdd:TIGR02169 658 GSRAPRGGILFSRSEPAELQrlRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE 737
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 1049 LLRQKGEQFR-LEMEKTGVGTgansqvlEIEKLNETMERQRTEIARLQNVL-DLTGSDNKGGFENVLEEIAELRREVS 1124
Cdd:TIGR02169 738 RLEELEEDLSsLEQEIENVKS-------ELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEEEVS 808
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1320-1626 |
3.33e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1320 NLENEVSRLedimqhlkskkreerwmraskrqsEKEMEELHHNIDDLLQEKKSLECEVEELhrTVQKRQQQKDFIDGNVE 1399
Cdd:TIGR02168 674 ERRREIEEL------------------------EEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1400 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1480 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVaakdsdfqclskkkEKLTEELQKLQKDIEMAER 1559
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI--------------ESLAAEIEELEELIEELES 873
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996213 1560 NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1626
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-779 |
3.86e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRAtEEFKqleeAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEAlDLEL 517
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKA-ERYQ----ALLKEKREYEGYELLKEKEALERQKEAIERQLA-SLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 518 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmkAQKSGKEQQLdimnkqyqQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKK--------IKDLGEEEQL--------RVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 598 QL--TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQE----RDQLEIVAMDAE 671
Cdd:TIGR02169 316 ELedAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaetRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRltQLEQsaLQAELEKERQAL 751
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW--KLEQ--LAADLSKYEQEL 471
|
330 340
....*....|....*....|....*....
gi 1622996213 752 KNALGK-AQFSEEKEQENSELHAKLKHLQ 779
Cdd:TIGR02169 472 YDLKEEyDRVEKELSKLQRELAEAEAQAR 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-757 |
4.69e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 4.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 510 QEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKET 589
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----------LKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 590 EEIKDLEEQLtegqiaanEALKKDLEGVI-----SGLQEYLGTIKGQ--ATQAQNECRKLRDEKETLLQRLTEVEQERDQ 662
Cdd:COG4942 90 KEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 663 LEIVAMDAENMRKELAELESALQEQHevnASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL-TQLEQSALQ 741
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALiARLEAEAAA 238
|
250
....*....|....*.
gi 1622996213 742 AELEKERQALKNALGK 757
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1394-1685 |
5.43e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 5.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1394 IDGNVESLmtELEIEKSLKHHEdIVDEIECIEKTLLKRRselreadrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1473
Cdd:TIGR02168 198 LERQLKSL--ERQAEKAERYKE-LKAELRELELALLVLR---------LEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1474 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKD 1553
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1554 IEMAERN-------EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1626
Cdd:TIGR02168 346 LEELKEElesleaeLEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1627 ALR-LGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQ 1685
Cdd:TIGR02168 426 LLKkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
435-1085 |
1.01e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.52 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKK-----ISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnklr 509
Cdd:PRK02224 192 LKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLE--------------------------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 510 qealdlelqmekqkqEIAGKQKEIKDLQIAIDSLDSKdpkhshmkaqKSGKEQQLDIMNKQYQQLESRLDEILSRIaket 589
Cdd:PRK02224 245 ---------------EHEERREELETLEAEIEDLRET----------IAETEREREELAEEVRDLRERLEELEEER---- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 590 EEIKDlEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMD 669
Cdd:PRK02224 296 DDLLA-EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE---SE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 670 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELekvtrltqleqsalqAELEKERQ 749
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE---------------AELEATLR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 750 ALKNALGKAQ----------------------FSEEKEQENSELHAKLkhlqddnnllkQQLKDFQNHLNHVVDGLVRPE 807
Cdd:PRK02224 437 TARERVEEAEalleagkcpecgqpvegsphveTIEEDRERVEELEAEL-----------EDLEEEVEEVEERLERAEDLV 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 808 EVAARVDELRRKLKLGTGEMNIHSPS-DVLGKSLADLQKQFSEILARSKWERDEAQvrerKLQEEMALQQEKLATGQEEf 886
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETiEEKRERAEELRERAAELEAEAEEKREAAA----EAEEEAEEAREEVAELNSK- 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 887 RQACERALEARMNFDKRQheARIQQMENEIHYLQENLKSMEEIQgltdlqlqeaDEEKERiLAQLRelEKKKKLEDAKSQ 966
Cdd:PRK02224 581 LAELKERIESLERIRTLL--AAIADAEDEIERLREKREALAELN----------DERRER-LAEKR--ERKRELEAEFDE 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 967 EQVFGLDKELKKLKKAVATSDKlATAELTIAKDQLKSLHGTVmKINQERAEELQEaerfsRKAAQAAR--DLTRAEAEIE 1044
Cdd:PRK02224 646 ARIEEAREDKERAEEYLEQVEE-KLDELREERDDLQAEIGAV-ENELEELEELRE-----RREALENRveALEALYDEAE 718
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1622996213 1045 LLQNLLRqkgeQFRLEMEKTGVGTgansqvLEIeKLNETME 1085
Cdd:PRK02224 719 ELESMYG----DLRAELRQRNVET------LER-MLNETFD 748
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-893 |
2.70e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.09 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 515
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 516 ELQMEKQKQEIAGKQKEIKDLqiaidsldskdpkhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG4717 162 EEELEELEAELAELQEELEEL----------------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 596 EEQLTEGQiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQnecrkLRDEKETLLQRLTEVEQERdqLEIVAMDAENMRK 675
Cdd:COG4717 226 EEELEQLE---NELEAAALEERLKEARLLLLIAAALLALLG-----LGGSLLSLILTIAGVLFLV--LGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 676 ELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNA 754
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELqELLREAEELEEELQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 755 LGKAQFSEEKE-QENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVrPEEVAARVDELRRKLKLGTGEMnihsps 833
Cdd:COG4717 376 LAEAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEEL------ 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 834 DVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQ-EEMALQQEKLATGQEEFRQACERA 893
Cdd:COG4717 449 EELREELAELEAELEQLEEDGELAELLQELEELKAElRELAEEWAALKLALELLEEAREEY 509
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1093 |
4.02e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.91 E-value: 4.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 350 YELEQElafyKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNL 429
Cdd:pfam02463 246 LRDEQE----EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 430 RGHTP-------------LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYK 496
Cdd:pfam02463 322 EKKKAekelkkekeeieeLEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 497 QLSGRLQLVNKLRQEALDL---ELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ 573
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLlkeEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 574 LESRLDEILSRIAKETEEIKDLEEQ-LTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQR 652
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARsGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 653 LTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL 732
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 733 TQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAAR 812
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 813 VDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACER 892
Cdd:pfam02463 722 LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 893 ALEARMNFDKRQ--HEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVF 970
Cdd:pfam02463 802 ELRALEEELKEEaeLLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 971 GLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLL 1050
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1622996213 1051 RQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIAR 1093
Cdd:pfam02463 962 NKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
423-1122 |
4.48e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 4.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 423 RNDHMN-LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ----LKKISEAGK-DLLYK 496
Cdd:PTZ00121 1062 AKAHVGqDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaedARKAEEARKaEDARK 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 497 QLSGRLQLVNKLRQEALDLElqmEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHmKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKKAEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEA 1217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 577 RLDEILSRI--AKETEEI-KDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:PTZ00121 1218 RKAEDAKKAeaVKKAEEAkKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 654 TEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARlnlrdAEANQLKEELEKVTRLT 733
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA-----ADEAEAAEEKAEAAEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 734 QLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQnhlnhvVDGLVRPEEVAARV 813
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK------ADEAKKKAEEAKKA 1446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 814 DELRRKLKLGTGEMNIHSPSDVLGKSlADLQKQFSEilaRSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACE-- 891
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKA-DEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEak 1522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 892 RALEARMNFDKRQ-HEARIQQMENEIHYLQ--ENLKSMEEIQgltdlQLQEADEEKERILAQLRELEKKKKLEDAKSQE- 967
Cdd:PTZ00121 1523 KADEAKKAEEAKKaDEAKKAEEKKKADELKkaEELKKAEEKK-----KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEv 1597
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 968 -QVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQE--RAEELQEAERFSR-KAAQAAR----DLTRA 1039
Cdd:PTZ00121 1598 mKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEkkKAEELKKAEEENKiKAAEEAKkaeeDKKKA 1677
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1040 EaEIELLQNLLRQKGEQFRLEMEKTgvgtganSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAEL 1119
Cdd:PTZ00121 1678 E-EAKKAEEDEKKAAEALKKEAEEA-------KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
...
gi 1622996213 1120 RRE 1122
Cdd:PTZ00121 1750 KKD 1752
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
631-1060 |
4.78e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 61.32 E-value: 4.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 631 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESA---LQEQHEVNASLQQTQGDLSAYEAE 707
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 708 LEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQ 787
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 788 QLKDFQNHLnhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQK----------QFSEILARSKWE 857
Cdd:COG4717 228 ELEQLENEL--------EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 858 RDEAQVRERKLQEEMALQQEKLATGQEEFRqaCERALEARMNFDKRQHEARIQQMENEIHYLQENLK---SMEEIQGLTD 934
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 935 LQLQEADEEKERILAQLREL-EKKKKLEDAKSQ-EQVFGLDKELKKLKKAVATSDKLATAELTIA--KDQLKSLHGTVMK 1010
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEELEEELEelEEELEELREELAE 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 1011 INQ-----ERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1060
Cdd:COG4717 458 LEAeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
523-1122 |
5.00e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 5.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 523 KQEIAGKqkEIKDLQIAIDSLDSK----DPKHSHMKAQKSGKEQQLDimnkqyqqlesRLDEILSRIAKETEEIKDLEEQ 598
Cdd:PRK02224 193 KAQIEEK--EEKDLHERLNGLESElaelDEEIERYEEQREQARETRD-----------EADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 599 LTEGQ--IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenmRKE 676
Cdd:PRK02224 260 IEDLRetIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL----------RDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtRLTQLEqsALQAELEKERQALKNA-- 754
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED--RREEIE--ELEEEIEELRERFGDApv 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 755 -LGKAQ-FSEEKEQENSELHAKLKHLQDDnnllkqqlkdfqnhlnhvvdgLVRPEEVAARVDELRRKLKLGTGEMNIHSP 832
Cdd:PRK02224 406 dLGNAEdFLEELREERDELREREAELEAT---------------------LRTARERVEEAEALLEAGKCPECGQPVEGS 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 833 SDVlgKSLADLQKQFSEILA-RSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEarmnfdkrQHEARIQQ 911
Cdd:PRK02224 465 PHV--ETIEEDRERVEELEAeLEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIA--------ERRETIEE 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 912 MENEIHYLQENLKSMEEiqgltdlqlqEADEEKERilAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDklat 991
Cdd:PRK02224 535 KRERAEELRERAAELEA----------EAEEKREA--AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL---- 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 992 AELTIAKDQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRA------EAEIELLQNLlRQKGEQFrlemektg 1065
Cdd:PRK02224 599 AAIADAEDEIERL--------REKREALAELNDERRERLAEKRERKREleaefdEARIEEARED-KERAEEY-------- 661
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996213 1066 vgtgansqvleIEKLNETMERQRTEIARLQNVLdltgsdnkGGFENVLEEIAELRRE 1122
Cdd:PRK02224 662 -----------LEQVEEKLDELREERDDLQAEI--------GAVENELEELEELRER 699
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1428-1665 |
6.29e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 6.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1428 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKD 1507
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1508 LEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKS 1587
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 1588 QVTSQQQEMAVLDRQLGHKKEELHLLQGSMvqakADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISE 1665
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEI----EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-660 |
7.42e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 7.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLlyKQLSGRLqlvNKLRQEALDLEL 517
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----RRIAALARRI--RALEQEL---AALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 518 QMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF---LDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 598 QLT------EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 660
Cdd:COG4942 168 ELEaeraelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1405-1671 |
8.18e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 8.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1405 LEIEKSLKHHEDIVDEIECIEKTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRA 1484
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKE---LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1485 QETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDI----EMAERN 1560
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlrERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1561 EDHHLQVLKESEVLLQAK---RAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA---LRLGETE 1634
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELseeLRELESK 909
|
250 260 270
....*....|....*....|....*....|....*..
gi 1622996213 1635 VTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLT 1671
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
441-758 |
9.28e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgrlqlvnklRQEALDLELQME 520
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-----------------------------RREALQRLAEYS 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 521 KQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT 600
Cdd:COG4913 658 WDEIDVASAEREIAELEAELERLDASSDDLAAL-------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 601 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQA------QNECRKLRDEKETLLQRLT-------------------- 654
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERelrenlEERIDALRARLNRAEEELEramrafnrewpaetadldad 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 655 -----EVEQERDQLE----------IVAMDAENMRKELAELESALQEQ--------HEVNASLQQTQ-GDLSAYEAELEA 710
Cdd:COG4913 811 leslpEYLALLDRLEedglpeyeerFKELLNENSIEFVADLLSKLRRAireikeriDPLNDSLKRIPfGPGRYLRLEARP 890
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1622996213 711 RlnlRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKA 758
Cdd:COG4913 891 R---PDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIERLRSE 935
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
539-770 |
9.37e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.46 E-value: 9.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 539 AIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQiAANEALKKDLEGVI 618
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 619 SGLQE------YLGTIKGQATQAqnecrklrdekeTLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQhevNA 692
Cdd:COG3883 93 RALYRsggsvsYLDVLLGSESFS------------DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAK---LA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 693 SLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSE 770
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-800 |
1.54e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNT--KNELLKQKTIELTracq 347
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLleKEKLNIQKNIDKI---- 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 348 KQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKapdespyigksrykrnmfaTESYIIDSAQAVQIKKMEPDEQLRNDHM 427
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKK-------------------QNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 428 NLRG----HTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQIL-----RATEEFKQLEEAI--QLKKISEAGKDLLY- 495
Cdd:TIGR04523 254 QLNQlkdeQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKELKSELknQEKKLEEIQNQISQn 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 496 -KQLSGRLQLVNKLRQEALDLEL--------------QMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpKHSHMKAQKSGK 560
Cdd:TIGR04523 334 nKIISQLNEQISQLKKELTNSESensekqreleekqnEIEKLKKENQSYKQEIKNLESQINDLES---KIQNQEKLNQQK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 561 EQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEqltegQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECR 640
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSR-------SIN 478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 641 KLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEAE------------ 707
Cdd:TIGR04523 479 KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLtKKISSLKEKIEKLESEKKEKESKISDLEDElnkddfelkken 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 708 LEARLNLRDAEANQLKEELEKVTRlTQLEQSALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQ 787
Cdd:TIGR04523 559 LEKEIDEKNKEIEELKQTQKSLKK-KQEEKQELIDQKEKEKKDLIKEI------EEKEKKISSLEKELEKAKKENEKLSS 631
|
570
....*....|...
gi 1622996213 788 QLKDFQNHLNHVV 800
Cdd:TIGR04523 632 IIKNIKSKKNKLK 644
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-784 |
2.01e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 243 HLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDK--------LNKSLKEEA 314
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDqlqklladLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 315 MLQKQ-------------SCEELKSDLNTKN-ELLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIDk 380
Cdd:pfam15921 395 LEKEQnkrlwdrdtgnsiTIDHLRRELDDRNmEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSLTAQLE- 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 381 apdespyigksrykrnmfATESYIIDSAQAVQIKKM--EPDEQLRNDhmnlrghtpLDTQLEDKEKKISAAQTRLSELHD 458
Cdd:pfam15921 472 ------------------STKEMLRKVVEELTAKKMtlESSERTVSD---------LTASLQEKERAIEATNAEITKLRS 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 459 EIEKAEQQILRATEEFKQLEEA---IQLKKISEAGKD----LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQK 531
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVqteCEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRL 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 532 EIKDLQIAidsLDSKDPKHSHMKAQKSGKE-QQLDIMNKQYQQLES------RLDEILSRIAKETEEIKDLEEQLtegqi 604
Cdd:pfam15921 605 ELQEFKIL---KDKKDAKIRELEARVSDLElEKVKLVNAGSERLRAvkdikqERDQLLNEVKTSRNELNSLSEDY----- 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 605 aanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEketllqrLTEVEQERDQLEIVAMDAENM----RKELAEL 680
Cdd:pfam15921 677 ---EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT-------LKSMEGSDGHAMKVAMGMQKQitakRGQIDAL 746
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 681 ESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVtrltqleqSALQAELEKERQALKNALGKA-- 758
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVL--------RSQERRLKEKVANMEVALDKAsl 818
|
570 580 590
....*....|....*....|....*....|
gi 1622996213 759 QFSEEKE----QENSELHAKLKHLQDDNNL 784
Cdd:pfam15921 819 QFAECQDiiqrQEQESVRLKLQHTLDVKEL 848
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
561-769 |
2.60e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 58.87 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 561 EQQLDIMNKQYQQLESRLDEILSR--IAKETEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 636
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSEleSQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 637 NEcrklrDEKETLLQRLTEVEQERDQLEIVAMDA----ENMRKELAELESALQEqhEVNASLQQTQGDLSAyeaeLEARL 712
Cdd:COG3206 261 QS-----PVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQ--EAQRILASLEAELEA----LQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996213 713 NLRDAEANQLKEELEKVTRLtQLEQSALQAELEKERQALKNALGKAQFSEEKEQENS 769
Cdd:COG3206 330 ASLQAQLAQLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-818 |
3.45e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 58.82 E-value: 3.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 427 MNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEqqilratEEFKQLEEAIQlkkiseagkdllykQLSGRLQLV- 505
Cdd:PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN-------EAESDLEQDYQ--------------AASDHLNLVq 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 506 NKLRQ---------EALDLELQMEKQKQEIAGKQKEIKDLQI----AIDSLDSkdpkhshMKAQKSGKEQQLDIMNK--- 569
Cdd:PRK04863 342 TALRQqekieryqaDLEELEERLEEQNEVVEEADEQQEENEAraeaAEEEVDE-------LKSQLADYQQALDVQQTrai 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 570 QYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEylgtIKGQATQAQNECRKLRDE-- 645
Cdd:PRK04863 415 QYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEllSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEvs 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 646 KETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSA---YEAELEARLNLRDAEANQL 722
Cdd:PRK04863 491 RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKnldDEDELEQLQEELEARLESL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 723 KEELEKVtRLTQLEQSALQAELEKERQALknalgkaqfsEEKEQENSELHAKLKHLQD---DNNLLKQQLKDF-QNHLNH 798
Cdd:PRK04863 571 SESVSEA-RERRMALRQQLEQLQARIQRL----------AARAPAWLAAQDALARLREqsgEEFEDSQDVTEYmQQLLER 639
|
410 420
....*....|....*....|
gi 1622996213 799 VVDGLVRPEEVAARVDELRR 818
Cdd:PRK04863 640 ERELTVERDELAARKQALDE 659
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
516-761 |
3.56e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.53 E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 516 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDskdpkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQ-----------------AELEELNEEYNELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 596 EEQLTEGQIAANEALK------------------KDLEGVISGLqEYLGTIkgqATQAQNECRKLRDEKETLLQRLTEVE 657
Cdd:COG3883 78 EAEIEERREELGERARalyrsggsvsyldvllgsESFSDFLDRL-SALSKI---ADADADLLEELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 658 QERDQLEIVAMDAENMRKelaELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQ 737
Cdd:COG3883 154 AKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
250 260
....*....|....*....|....
gi 1622996213 738 SALQAELEKERQALKNALGKAQFS 761
Cdd:COG3883 231 AAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
288-1005 |
4.23e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.31 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 288 ELKSKQTRFLEEIKNQDKLNKSLKEE-AMLQKQ---SCEELKSDLNTKNELLKQKTIELTRAcqkqyeLEQELAFYKIDA 363
Cdd:pfam12128 266 GYKSDETLIASRQEERQETSAELNQLlRTLDDQwkeKRDELNGELSAADAAVAKDRSELEAL------EDQHGAFLDADI 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 364 kfeplnyyPSEYAEIDKAPDESPYIgkSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNLrgHTPLDTQLEDKE 443
Cdd:pfam12128 340 --------ETAAADQEQLPSWQSEL--ENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGI--KDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 444 KKISAAQTRLSELHDEI-EKAEQQILRATEEFKQLEEAIQLKKISEAGKdllykQLSGRLqlvnKLRQEALDLELQMEKQ 522
Cdd:pfam12128 408 RQLAVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGELKLRLNQA-----TATPEL----LLQLENFDERIERARE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 523 KQEIAGKQKEikDLQIAIDSLDSKDPKHShmkaqksgkeQQLDIMNKQYQQLESRLDEilsriaketeeikdLEEQLTEG 602
Cdd:pfam12128 479 EQEAANAEVE--RLQSELRQARKRRDQAS----------EALRQASRRLEERQSALDE--------------LELQLFPQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDaENMRKELAELES 682
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASE-EELRERLDKAEE 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 683 ALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALgkAQFSE 762
Cdd:pfam12128 612 ALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERL--NSLEA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 763 EKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVD---GLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKS 839
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDaqlALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 840 LADLQKQFSEILAR-SKWERDEAQVRE--RKLQEEMALQQEKLATGQEEFRQACER------ALEARMNFDKRQHEARIQ 910
Cdd:pfam12128 770 IAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIADTKLRRAKLEMERK 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 911 QMENEIHYLQENLKSME-EIQGLTDLQL----QEADEEKERILAQLRELEKKKK--LEDAKSQEQVFGLDKELKKLKKAV 983
Cdd:pfam12128 850 ASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDylSESVKKYVEHFKNVIADHSGSGLA 929
|
730 740
....*....|....*....|..
gi 1622996213 984 ATSDKLATAELTIAKDQLKSLH 1005
Cdd:pfam12128 930 ETWESLREEDHYQNDKGIRLLD 951
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-732 |
4.23e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLlyKQLSGRLQLVNKLRQE----AL 513
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRiearLR 815
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 514 DLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIK 593
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDL----------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 594 DLEEQltegqiaanealKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA---MDA 670
Cdd:TIGR02169 886 DLKKE------------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeeLSL 953
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 671 ENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL 732
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
561-934 |
4.78e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 4.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 561 EQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTE-GQIAANEALKKDLEGVISGLQEyLGTIKGQATQAQNEC 639
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASAEREIAE-LEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 640 RKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTqgdlsAYEAELEARL--NLRDA 717
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL-----ELRALLEERFaaALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 718 EANQLKEELEKvtrltqlEQSALQAELEKERQALKNALgkAQFSEEKEQENSELHAKLkhlqDDNNllkqqlkDFQNHLN 797
Cdd:COG4913 763 VERELRENLEE-------RIDALRARLNRAEEELERAM--RAFNREWPAETADLDADL----ESLP-------EYLALLD 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 798 HVV-DGLVRPEEvaarvdELRRKLKlgtgEMNIHSPSDVLGK---SLADLQKQFSEI---LARSKWERDEA---QVRERK 867
Cdd:COG4913 823 RLEeDGLPEYEE------RFKELLN----ENSIEFVADLLSKlrrAIREIKERIDPLndsLKRIPFGPGRYlrlEARPRP 892
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 868 LQEEmalqqeklatgqEEFRQACERALEARMNFDKRQHEARIQQMENEIHYL--QENLKSMEEIQGLTD 934
Cdd:COG4913 893 DPEV------------REFRQELRAVTSGASLFDEELSEARFAALKRLIERLrsEEEESDRRWRARVLD 949
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
440-742 |
5.63e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 58.04 E-value: 5.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 440 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlkkiseagkdllykqlsgRLQLVNKL----------- 508
Cdd:COG3096 832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKE---------------------QLQLLNKLlpqanlladet 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 509 ---RQEALDLEL-QMEKQKQEIAGKQKEIKDLQIAIDSLDSkDPkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSR 584
Cdd:COG3096 891 ladRLEELREELdAAQEAQAFIQQHGKALAQLEPLVAVLQS-DP-------------EQFEQLQADYLQAKEQQRRLKQQ 956
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 585 IAKETEEIK--------DLEEQLTEGQiAANEALKKDLEGV---ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:COG3096 957 IFALSEVVQrrphfsyeDAVGLLGENS-DLNEKLRARLEQAeeaRREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTL 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 654 TEVEQERDQLEIVAmDAEnmrkelAElESALQEQHEVNASLQQTQGDLSayeaELEARLNLRDAEANQLKEELEKVTR-L 732
Cdd:COG3096 1036 QELEQELEELGVQA-DAE------AE-ERARIRRDELHEELSQNRSRRS----QLEKQLTRCEAEMDSLQKRLRKAERdY 1103
|
330
....*....|
gi 1622996213 733 TQLEQSALQA 742
Cdd:COG3096 1104 KQEREQVVQA 1113
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
435-602 |
5.96e-08 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 55.32 E-value: 5.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRqEALD 514
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEEL----------EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 1622996213 595 LEEQLTEG 602
Cdd:COG1579 164 EREELAAK 171
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1469-1697 |
6.31e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 6.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1469 SLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQ 1548
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1549 KLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEAL 1628
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 1629 rlgetevtekcNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTA 1697
Cdd:TIGR02168 831 -----------RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
9.51e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 50.22 E-value: 9.51e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 148 KLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEIEHI-PVWLGKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
643-966 |
1.29e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 56.89 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 643 RDEKETLLQRLTEVEQE----RDQLEIVAMDAENMRKELAEL---ESALQEQHE--------VNASLQQT------QGDL 701
Cdd:PRK04863 278 ANERRVHLEEALELRRElytsRRQLAAEQYRLVEMARELAELneaESDLEQDYQaasdhlnlVQTALRQQekieryQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 702 SAYEAELEARLNLRdAEANQLKEELEKVTRLTQLEQSALQAELEKERQAL-------------KNALGKAQ-------FS 761
Cdd:PRK04863 358 EELEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraiqyqqaVQALERAKqlcglpdLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 762 EEKEQE-NSELHAKLKHLQDDNNLLKQQLKDFQNHLNH----------VVDGLVRPEE----------------VAARVD 814
Cdd:PRK04863 437 ADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfeqayqlvrkIAGEVSRSEAwdvarellrrlreqrhLAEQLQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 815 ELRRKLKLGTGEMNIHspsdvlgkslADLQKQFSEILARSKWERDEAQVRERkLQEEmalQQEKLATGQEEFRQACERAL 894
Cdd:PRK04863 517 QLRMRLSELEQRLRQQ----------QRAERLLAEFCKRLGKNLDDEDELEQ-LQEE---LEARLESLSESVSEARERRM 582
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 895 EARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLREL-EKKKKLEDAKSQ 966
Cdd:PRK04863 583 ALRQQLE--QLQARIQRLAArapAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELtVERDELAARKQA 656
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
1.96e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 1.96e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 126 KLEVLNLSYNLIGKIEK--LDKLLKLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1424-1635 |
3.54e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.02 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1424 IEKTLLKRRSELREADRLLAE--AESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSL 1501
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1502 QADA--KDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEdhhLQVLKESEVLLQAKR 1579
Cdd:COG3206 260 LQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 1580 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKadLQEALRLGETEV 1635
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRV 390
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1443-1632 |
4.06e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.45 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1443 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKE- 1521
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1522 -------------INKIVAAKD-SDF-------QCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRA 1580
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 1581 ELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGE 1632
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-966 |
4.07e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE-----------EAIQLKKISEAGKDLLYKQLSGRLQ 503
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEkeleklnnkynDLKKQKEELENELNLLEKEKLNIQK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 504 LVNKLRQEALDLELQM---EKQKQEIAGKQKEIKDLQ----IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLES 576
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 577 RLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEV 656
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 657 EQERDQLEivaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrltqLE 736
Cdd:TIGR04523 348 KKELTNSE---SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK------LQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 737 QSALQAELEKERQALKNALGKAQFSEEKEQeNSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpeevaarvDEL 816
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL----------EQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 817 RRKLKLGTGEMnihspsdvlgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFrqaceraLEA 896
Cdd:TIGR04523 488 QKELKSKEKEL----------KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL-------NKD 550
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 897 RMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKK-----KKLEDAKSQ 966
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKissleKELEKAKKE 625
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
435-702 |
4.31e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.02 E-value: 4.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAA----QTRLSELHDEIEKAEQQIlratEEFKQLEEAIQLkkisEAGKDLLYKQLSGrlqlvnkLRQ 510
Cdd:COG3206 162 LEQNLELRREEARKAleflEEQLPELRKELEEAEAAL----EEFRQKNGLVDL----SEEAKLLLQQLSE-------LES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 511 EALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaQKSGKEQQLDimnKQYQQLESRLDEILSRIAKETE 590
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPEL------------LQSPVIQQLR---AQLAELEAELAELSARYTPNHP 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 591 EIKDLEEQLtegqiaanEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDA 670
Cdd:COG3206 292 DVIALRAQI--------AALRAQLQ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
250 260 270
....*....|....*....|....*....|..
gi 1622996213 671 ENMRKELAELesaLQEQHEVNASLQQTQGDLS 702
Cdd:COG3206 361 EVARELYESL---LQRLEEARLAEALTVGNVR 389
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
561-1096 |
5.10e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 561 EQQLDIMNKQYQQLEsRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECR 640
Cdd:COG4913 241 HEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 641 KLRDEKETL--------LQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNAS--------LQQTQGDLSAY 704
Cdd:COG4913 320 ALREELDELeaqirgngGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEefaalraeAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 705 EAELEARLNLRDAEANQLKEELEKVTR-LTQLEQ--SALQAELEKERQALKNALGKAQfseekeqenSELH--AKLKHLQ 779
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAeIASLERrkSNIPARLLALRDALAEALGLDE---------AELPfvGELIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 780 DDNnllkqqlKDFQNHLNHVVDG-----LVRPE---EVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADlqkqfsEIL 851
Cdd:COG4913 471 PEE-------ERWRGAIERVLGGfaltlLVPPEhyaAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 852 ARSKWERDEAQVR-ERKLQEEMALQQeklATGQEEFRQAcERAL--EARMNFDKRQHEARIQQMENEIHYL-QENLKSME 927
Cdd:COG4913 538 GKLDFKPHPFRAWlEAELGRRFDYVC---VDSPEELRRH-PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 928 EIQGltdlQLQEADEEKERILAQLRELEKKKK-LEDAKSQEQVFGLDKELKKLKKAVATsdklATAELTIAKDQLKSLHG 1006
Cdd:COG4913 614 ALEA----ELAELEEELAEAEERLEALEAELDaLQERREALQRLAEYSWDEIDVASAER----EIAELEAELERLDASSD 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1007 TVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQK-------------------GEQFRLEMEKTGVG 1067
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELqdrleaaedlarlelrallEERFAAALGDAVER 765
|
570 580
....*....|....*....|....*....
gi 1622996213 1068 TGANSQVLEIEKLNETMERQRTEIARLQN 1096
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMR 794
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1334-1609 |
8.35e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 8.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1334 HLKSKKREERWMRASKRQ---SEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnveslMTELEIEKS 1410
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQlasLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD---------------LGEEEQLRV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1411 LKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTD--AKRSLLQTE------------SD 1476
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerKRRDKLTEEyaelkeeledlrAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1556
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 1557 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEE 1609
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
435-711 |
9.89e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 9.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnKLRQEALD 514
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID------------------------KLQAEIAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQKQEIAgkqKEIKDLQIAIDS-------LDSKDPKhshmkaqksgkeqqlDIMNKQyqqleSRLDEILSRIAK 587
Cdd:COG3883 77 AEAEIEERREELG---ERARALYRSGGSvsyldvlLGSESFS---------------DFLDRL-----SALSKIADADAD 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 588 ETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA 667
Cdd:COG3883 134 LLEELKADKAELEA-KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1622996213 668 MDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR 711
Cdd:COG3883 213 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAG 256
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
435-601 |
1.03e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEAGKDLLYK------------------ 496
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA--ELEAQKEELAELLRAlyrlgrqpplalllsped 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 497 --QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSL-DSKDPKHSHMKAQKSGKEQQLDIMNKQYQQ 573
Cdd:COG4942 131 flDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALlAELEEERAALEALKAERQKLLARLEKELAE 210
|
170 180
....*....|....*....|....*...
gi 1622996213 574 LESRLDEILSRIAKETEEIKDLEEQLTE 601
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
471-1058 |
1.17e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.82 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 471 TEEFKQLEEAIQLKKISEAgkdlLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAgkqkEIKDLQIAIDSLDSKDPKH 550
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHA----YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEA----VLEETQERINRARKAAPLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 551 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtIKG 630
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE----ISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 631 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA 710
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 711 RLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK-------------LKH 777
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgpltrrMQR 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 778 LQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDElrRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWE 857
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ--SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 858 RDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNF-----DKRQHEARIQQMENEihYLQENLKSMEEIQGL 932
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltqeRVREHALSIRVLPKE--LLASRQLALQKMQSE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 933 TDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLhgtvMKIN 1012
Cdd:TIGR00618 689 KE-QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR----TEAH 763
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1622996213 1013 QERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFR 1058
Cdd:TIGR00618 764 FNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-742 |
1.25e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.81 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdlLYKQLSGRLQL--VNKLRQEALDLELQ 518
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS-----------ALNRLLPRLNLlaDETLADRVEEIREQ 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 519 M---EKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKsgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEikDL 595
Cdd:PRK04863 903 LdeaEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDY----QQAQQTQRDAKQQAFALTEVVQRRAHFSYE--DA 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 596 EEQLTEGQiAANEALKKDLEgvisGLQEYLGTIKGQATQAQNECRK-------LRDEKETLLQRLTEVEQERDQLEIVAm 668
Cdd:PRK04863 977 AEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVPA- 1050
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 669 dAENMRKELAELESALQEQhevnasLQQTQGDLSAyeaeLEARLNLRDAEANQLKEELEKVTR-LTQLEQSALQA 742
Cdd:PRK04863 1051 -DSGAEERARARRDELHAR------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERdYHEMREQVVNA 1114
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1477-1700 |
1.61e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1556
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1557 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVT 1636
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996213 1637 EKCNHIREVKSLLEELSFQKGELN---VQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTAFLQ 1700
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEeleEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-1555 |
1.74e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 551 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEI------LSRIAKETEEIKDLEEQLTEGQIAAneaLKKDLEGvisgLQEY 624
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELerqlksLERQAEKAERYKELKAELRELELAL---LVLRLEE----LREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 625 LGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAE----NMRKELAELESALQEQHEVNASLQQTQGD 700
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 701 LSAYEAELEARLNLRDAEANQLKEELEKVTRLTQlEQSALQAELEKERQALKNALGKAQfsEEKEQENSELHAKLKHLQD 780
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELE--EQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 781 DNNLLkQQLKDFQNHLNHvvdglvRPEEVAARVDELRRKLklgtgemnihspsdvlgkSLADLQKQfSEILARSKWERDE 860
Cdd:TIGR02168 398 LNNEI-ERLEARLERLED------RRERLQQEIEELLKKL------------------EEAELKEL-QAELEELEEELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 861 AQVRERKLQEEMALQQEKLATGQEEFRQAceRALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDL--QLQ 938
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 939 EADEEKER-ILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKInqerAE 1017
Cdd:TIGR02168 530 SVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV----AK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1018 ELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEK----------TGVGTGANSQVL----EIEKLNET 1083
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILerrrEIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1084 MERQRTEIARLQNVLDltgsDNKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRgywyfmppppsskvssHSSQATK 1163
Cdd:TIGR02168 686 IEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARL----------------EAEVEQL 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1164 DSGVGLKYSASTPVRKPRPGQQDGKEGSQPPPASgywvyspIRSGLHKLFPSRDADSGGDSQEESELDDQEEppfvpppg 1243
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAE-------AEAEIEELEAQIEQLKEELKALREALDELRA-------- 810
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1244 ymmytvlpdgspvpqgmalyapppplpnnsrpltpgtvvygpppagapmvygppppnfsipfipmgvlhcnvpEHHNLE- 1322
Cdd:TIGR02168 811 -------------------------------------------------------------------------ELTLLNe 817
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1323 ---NEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDllqekksLECEVEELHRTVQKRQQQKDFIDGNVE 1399
Cdd:TIGR02168 818 eaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE-------LEELIEELESELEALLNERASLEEALA 890
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1400 SLMTELeiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTEsdAEE 1479
Cdd:TIGR02168 891 LLRSEL---------EELSEELRELESKRSELRRELEELREKLAQLELRL----EGLEVRIDNLQERLSEEYSLT--LEE 955
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 1480 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIE 1555
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE-------RYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-1127 |
1.83e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAE--QQILRATEEFKQLEEAIQlKKISEAGKDLLYKQLSGRLQLVNKLRQEALDL 515
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYELLKE-KEALERQKEAIERQLASLEEELEKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 516 ELQMEKQKQEIAGKQKEIKDL----QIAIDSldskdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEE 591
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLgeeeQLRVKE------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 592 IKDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaE 671
Cdd:TIGR02169 338 IEELEREIEEERK-----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK------R 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-ARLNLRDAEAN--QLKEELEKVT---RLTQLEQSALQAELE 745
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEdKALEIKKQEWKleQLAADLSKYEqelYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 746 KERQALKNALGKAQFSEEKEQENSelhAKLKHLQDDNNLLKQQLKDF---------------QNHLNHVVdglVRPEEVA 810
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGR---AVEEVLKASIQGVHGTVAQLgsvgeryataievaaGNRLNNVV---VEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 811 ARVDELRRKLKLG-------TGEMNIHSPSDVLGKS--------LADLQKQFS--------------------------- 848
Cdd:TIGR02169 561 KEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdLVEFDPKYEpafkyvfgdtlvvedieaarrlmgkyr 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 849 ------EILARS------KWERDEAQVRERKLQEEMALQQEKLatgqEEFRQACERALEARMNFDKRQHEARIQqmenei 916
Cdd:TIGR02169 641 mvtlegELFEKSgamtggSRAPRGGILFSRSEPAELQRLRERL----EGLKRELSSLQSELRRIENRLDELSQE------ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 917 hyLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTI 996
Cdd:TIGR02169 711 --LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 997 AKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQfRLEMEKtgvgtgansqvlE 1076
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEK------------E 855
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 1077 IEKLNETMERQRTEIARLQN-VLDLTG--SDNKGGFENVLEEIAELRREVSYQN 1127
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAaLRDLESrlGDLKKERDELEAQLRELERKIEELE 909
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
515-1115 |
1.93e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQKQEIAGKQKEIKDLQIAiDSLDSKDPKHSHMKAQKSGKEQQLDimNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDID-GNHEGKAEAKAHVGQDEGLKPSYKD--FDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 595 LEEQLTEGQIAANEALKKDLEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEveqERDQLEIVAMDAENMR 674
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAED-----ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKK 1177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 675 KELAELESALQEQHEVNASLQQTQGDlSAYEAELEARL-NLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKN 753
Cdd:PTZ00121 1178 AEAARKAEEVRKAEELRKAEDARKAE-AARKAEEERKAeEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 754 --ALGKAQFSEEKEQENSELHAKLKHLQDDNNLLK-QQLKDFQNhlNHVVDGLVRPEEVAARVDELRRKLKlgtgemNIH 830
Cdd:PTZ00121 1257 feEARMAHFARRQAAIKAEEARKADELKKAEEKKKaDEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAE------EAK 1328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 831 SPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQ------EEMALQQEKLATGQEEFRQACE---RALEARMNFD 901
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaekkkEEAKKKADAAKKKAEEKKKADEakkKAEEDKKKAD 1408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 902 KRQHEARIQQMENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKK 981
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 982 A--VATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERfSRKAAQAARDLTRAEAEiELlqnllrQKGEQFRL 1059
Cdd:PTZ00121 1488 AkkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE-AKKADEAKKAEEKKKAD-EL------KKAEELKK 1559
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 1060 EMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEE 1115
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-683 |
2.09e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 436 DTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkdllykqlsgrlqlvnKLRQEALDL 515
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE------------------------ALQAEIDKL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 516 ELQMEKQKQEIAGKQKEIKD----LQIAIDS-------LDSKDPKH--SHMKAQKSGKEQQLDIMNkQYQQLESRLDEIL 582
Cdd:COG3883 71 QAEIAEAEAEIEERREELGEraraLYRSGGSvsyldvlLGSESFSDflDRLSALSKIADADADLLE-ELKADKAELEAKK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 583 SRIAKETEEIKDLEEQLtegqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQ 662
Cdd:COG3883 150 AELEAKLAELEALKAEL--------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
250 260
....*....|....*....|.
gi 1622996213 663 LEIVAMDAENMRKELAELESA 683
Cdd:COG3883 222 AAAAAAAAAAAAAAAAAAAAA 242
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
511-774 |
2.22e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.75 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 511 EALDLELQMEKQKQEIAGKQKEIKD-LQIAIDSLDskDPKHSHMKAQksgkeqqldimnkQYQQ----LESRLDEILSRI 585
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEaLQSALNWLE--ERKGSLERAK-------------QYQQvidnFPKLSAELRQQL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 586 AKETEEIKDLEEQLTegqiaaNEALKKDLEGVISGLQEylgtIKGQATQAQNECRKLRDEKETLLQRLTEVeqerdqlei 665
Cdd:PRK10929 89 NNERDEPRSVPPNMS------TDALEQEILQVSSQLLE----KSRQAQQEQDRAREISDSLSQLPQQQTEA--------- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 666 vamdaenmRKELAELESALQEQHEVNASLQQTQgdlsayEAELEARLNLRDAEANQLkeELEKVTRLTQLEQSALQAELE 745
Cdd:PRK10929 150 --------RRQLNEIERRLQTLGTPNTPLAQAQ------LTALQAESAALKALVDEL--ELAQLSANNRQELARLRSELA 213
|
250 260 270
....*....|....*....|....*....|....*....
gi 1622996213 746 KER--------QALKNALgKAQFSEEKEQ--ENSELHAK 774
Cdd:PRK10929 214 KKRsqqldaylQALRNQL-NSQRQREAERalESTELLAE 251
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
261-1099 |
2.22e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 261 QEAFERFsLEEVERLERDLEKKMIETEELKSKQTRFLEE--IKNQDKLNK-SLKEEAML-----QKQSCEELKSDL-NTK 331
Cdd:pfam15921 73 KEHIERV-LEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvIDLQTKLQEmQMERDAMAdirrrESQSQEDLRNQLqNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 332 NELLKQKTIELTRACQKQYELEQelaFYKIDAKFEP-LNYYPSEYAEIDKAPdespyiGKSRYKRNMFATESYiidSAQA 410
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQ---LRKMMLSHEGvLQEIRSILVDFEEAS------GKKIYEHDSMSTMHF---RSLG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 411 VQIKKMepdeqLRNdhmnlrghtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEfkQLEEAIQLKKISEAG 490
Cdd:pfam15921 220 SAISKI-----LRE----------LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQD--RIEQLISEHEVEITG 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 491 kdLLYKQLSGRLQlVNKLRQEaldLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkHSHMKAQKSGKEQQLDIMNKQ 570
Cdd:pfam15921 283 --LTEKASSARSQ-ANSIQSQ---LEIIQEQARNQNSMYMRQLSDLESTVSQL------RSELREAKRMYEDKIEELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 571 YQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALKKDLEGvisglqeylgtikgqatqaqnecrklRDEKETLL 650
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQESGNLDDQL--------QKLLADLHK--------------------------REKELSLE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 651 QRLTEVEQERDQLEIVAMDaeNMRKELaelesalqeqHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVT 730
Cdd:pfam15921 397 KEQNKRLWDRDTGNSITID--HLRREL----------DDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 731 RLT-QLEQSA-LQAELEKERQALKNALGKAQFS--------EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVv 800
Cdd:pfam15921 465 SLTaQLESTKeMLRKVVEELTAKKMTLESSERTvsdltaslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL- 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 801 dglvrpEEVAARVDELRRKLklgtgemnihSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLa 880
Cdd:pfam15921 544 ------RNVQTECEALKLQM----------AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL- 606
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 881 tgqEEFRqacerALEARMNFDKRQHEARIQQMENE----IHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEK 956
Cdd:pfam15921 607 ---QEFK-----ILKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEV 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 957 KKKLEDAKSQEQvfgldkelKKLKKAVATSDKLATAELTIAKDQLKSLHGT-------VMKINQERAEELQEAERFSRKA 1029
Cdd:pfam15921 679 LKRNFRNKSEEM--------ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKI 750
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1030 AQAARDLTRAEAEIELLqnllrqKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLD 1099
Cdd:pfam15921 751 QFLEEAMTNANKEKHFL------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1321-1591 |
3.35e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKREERWMR-------ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1393
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRdeadevlEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1394 IDGNVESLMTELEIEKSlkHHEDIVDEIEciekTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1473
Cdd:PRK02224 291 LEEERDDLLAEAGLDDA--DAEAVEARRE----ELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1474 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKD 1553
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 1554 IEMAER--------------NEDHHLQVLKESEVLLQAKRAELEKLKSQVTS 1591
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1346-1559 |
3.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 3.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1346 RASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKHHEDIVDEieci 1424
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaELRAELEAQKEELAE---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1425 ektLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT-ESDAEELERRAQETAVNLVKADQQLRSLQA 1503
Cdd:COG4942 109 ---LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 1504 DAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1559
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1321-1596 |
4.23e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1401 LMTELeiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:TIGR02168 314 LERQL---------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1481 ERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERN 1560
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270
....*....|....*....|....*....|....*.
gi 1622996213 1561 EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1596
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1319-1559 |
4.56e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1319 HNLENEVSRLED--IMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDG 1396
Cdd:TIGR02169 775 HKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1397 NVESLMTEL-EIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTES 1475
Cdd:TIGR02169 855 EIENLNGKKeELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1476 DAEELERRAQETAVNLVKAD---QQLRSLQADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQK 1552
Cdd:TIGR02169 935 EIEDPKGEDEEIPEEELSLEdvqAELQRVEEEIRALEPVNMLAIQEYEEVLK-------RLDELKEKRAKLEEERKAILE 1007
|
....*..
gi 1622996213 1553 DIEMAER 1559
Cdd:TIGR02169 1008 RIEEYEK 1014
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1472-1669 |
4.80e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1472 QTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQ 1551
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1552 KDIE-----MAERNEDHHLQVLKESEVLLQAKRAeLEKLKSQVTSQQQEMAVLDRQLghkkEELHLLQGSMVQAKADLQE 1626
Cdd:COG4942 104 EELAellraLYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1622996213 1627 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1669
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
416-773 |
4.91e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 416 MEPDEQLRNDHMNLrghtpLDTQLEDKEKkISAAQTRLSELHDEIEKAEQQILRATEefkQLEEAIQLKKISEAGKDLLY 495
Cdd:COG3096 325 LEQDYQAASDHLNL-----VQTALRQQEK-IERYQEDLEELTERLEEQEEVVEEAAE---QLAEAEARLEAAEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 496 KQLSGRlqlvnklrQEALD------LELQMEKQKQEIAGKQKEIKDLqiaidSLDSKDPKHSHMKAQKS-------GKEQ 562
Cdd:COG3096 396 SQLADY--------QQALDvqqtraIQYQQAVQALEKARALCGLPDL-----TPENAEDYLAAFRAKEQqateevlELEQ 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 563 QLDIMNKQYQQLESRLdEILSRIAKETEEikdleeqlTEGQIAANEALK-----KDLEGVISGLQEYLGTIKgQATQAQN 637
Cdd:COG3096 463 KLSVADAARRQFEKAY-ELVCKIAGEVER--------SQAWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQ 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 638 ECRKLRDEketLLQRLTEVEQERDQLEIVAMDAEnmrKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR----LN 713
Cdd:COG3096 533 NAERLLEE---FCQRIGQQLDAAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLA 606
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 714 LRDAeANQLKEEL-EKVTRLTQLeQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 773
Cdd:COG3096 607 AQDA-LERLREQSgEALADSQEV-TAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-733 |
5.10e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 5.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 482 QLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksg 559
Cdd:COG4942 18 QADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL---------------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 560 kEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEalkkDLEGVISGLQeYLGTIkgqATQAQNEC 639
Cdd:COG4942 82 -EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE----DFLDAVRRLQ-YLKYL---APARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 640 RKLRDEKETLLQRLTEVEQERDQLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEA 719
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEAL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
250
....*....|....
gi 1622996213 720 NQLKEELEKVTRLT 733
Cdd:COG4942 230 ARLEAEAAAAAERT 243
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
507-1091 |
6.19e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 507 KLRQEALDLELQMEkqkQEIAGKQKeikdLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIA 586
Cdd:pfam01576 100 KMQQHIQDLEEQLD---EEEAARQK----LQLEKVTTEAKIKK---LEEDILLLEDQNSKLSKERKLLEERISEFTSNLA 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 587 KETEEIK--------------DLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLL 650
Cdd:pfam01576 170 EEEEKAKslsklknkheamisDLEERLKkeEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 651 QRLTEVEQERDQLEIVAMDAENMRKELAE-LESALQEQHEVNASLQQTQGDLSAYEAELEARLNL----------RDAEA 719
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTELEDTLDTtaaqqelrskREQEV 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 720 NQLKEELEKVTR--------LTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQD-------DNNL 784
Cdd:pfam01576 330 TELKKALEEETRsheaqlqeMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQakqdsehKRKK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 785 LKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGTGEMN-IHSPSDVLGKSLADLQKQF---SEILARSKWERDE 860
Cdd:pfam01576 410 LEGQLQELQARLS---ESERQRAELAEKLSKLQSELESVSSLLNeAEGKNIKLSKDVSSLESQLqdtQELLQEETRQKLN 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 861 AQVRERKLQEEMALQQEKLATgQEEFRQACERALEArMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEA 940
Cdd:pfam01576 487 LSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLST-LQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 941 DEEKERILAQLREL--EKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAeltiakdqlkslhgtvmkinqERAEE 1018
Cdd:pfam01576 565 AAAYDKLEKTKNRLqqELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISA---------------------RYAEE 623
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 1019 LQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEME-----KTGVGtganSQVLEIEKLNETMERQRTEI 1091
Cdd:pfam01576 624 RDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEdlvssKDDVG----KNVHELERSKRALEQQVEEM 697
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
6.61e-06 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 44.54 E-value: 6.61e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1622996213 126 KLEVLNLSYNLIGKIEKLDKLLKLRELNLSYN-KISKIEGIEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1317-1672 |
7.55e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 7.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1317 EHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQK-----RQ 1388
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdekLLDEKKQFEKIAEELKGKEQElifllQA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1389 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1468
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE---LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1469 SLLQTESDAEELErRAQETAVNLVKADQQLRSLQADAKDLEQHKI-KQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1547
Cdd:pfam05483 525 CKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1548 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVL----DRQLGHKKEELHLLQGSMVQAKAD 1623
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAI 683
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1624 LQEALRLgETEVTEKCNH-IREVKSLLEELSFQKGELnvqISERKTQLTL 1672
Cdd:pfam05483 684 ADEAVKL-QKEIDKRCQHkIAEMVALMEKHKHQYDKI---IEERDSELGL 729
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1417-1660 |
7.70e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 7.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1417 IVDEIECIEKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL-ERRAQETAVNLVKAD 1495
Cdd:TIGR02169 158 IIDEIAGVAEFDRKKEKALEELEEV-EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1496 QQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE--------LQKLQKDIEMAERNEDHHLQV 1567
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1568 LKESEvllqakrAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKS 1647
Cdd:TIGR02169 317 LEDAE-------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250
....*....|...
gi 1622996213 1648 LLEELSFQKGELN 1660
Cdd:TIGR02169 390 YREKLEKLKREIN 402
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1317-1659 |
7.76e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 7.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1317 EHHNLENEVSRLEDIMQHLKSKKREERWMRASKR--QSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKdfi 1394
Cdd:PRK03918 359 ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEleELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK--- 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1395 dGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKE--KTKNAVEKFTDAKRSLlq 1472
Cdd:PRK03918 436 -GKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKL-- 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1473 TESDAEELERRAQE---TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQK 1549
Cdd:PRK03918 513 KKYNLEELEKKAEEyekLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1550 LQKDIEMAERNedhhLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAK-------- 1621
Cdd:PRK03918 593 RLKELEPFYNE----YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeelreey 668
|
330 340 350
....*....|....*....|....*....|....*...
gi 1622996213 1622 ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGEL 1659
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1321-1670 |
7.77e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 7.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKRE--ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV-----QKRQQQKDF 1393
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1394 ID--GNVESLMTEL--EIEKSLKHHEDivdEIECIEKTLLKRRSELREA------------------DRLLAE---AESE 1448
Cdd:pfam15921 316 MRqlSDLESTVSQLrsELREAKRMYED---KIEELEKQLVLANSELTEArterdqfsqesgnlddqlQKLLADlhkREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1449 LSCTKEKTKNAVEKFTDAKRSL--LQTESDAEELERRAQETAVNLVKAD------QQLRSLQAdakdleqhkikQEEILK 1520
Cdd:pfam15921 393 LSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEcqgqmeRQMAAIQG-----------KNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1521 EINKIVAAKDSDFQCLskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLd 1600
Cdd:pfam15921 462 KVSSLTAQLESTKEML----RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL- 536
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1601 rqlghKKEELHLLQgsmVQAKAdlqEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQL 1670
Cdd:pfam15921 537 -----KNEGDHLRN---VQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL 595
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1419-1629 |
9.55e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 9.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1419 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1498
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1499 RSLQADAKDL--EQHKIKQEEILKEINKIVAAKDS--DFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVL 1574
Cdd:COG4942 100 EAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 1575 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALR 1629
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIA 230
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1320-1653 |
1.15e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1320 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnve 1399
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1400 slmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESElsctKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1480 LER-RAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKdSDFQCLSKKKEKLTEELQKLQKDIEMAE 1558
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1559 R--NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsMVQAKADLQEALR-LGETEV 1635
Cdd:PRK03918 443 RelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKkYNLEEL 520
|
330
....*....|....*...
gi 1622996213 1636 TEKCNHIREVKSLLEELS 1653
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLK 538
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
572-729 |
1.25e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.38 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 572 QQLESRLDEILSRIAKETEEIKDLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE-- 647
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAalEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEye 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 648 TLLQRLTEVEQERDQLEivamdaENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE 727
Cdd:COG1579 93 ALQKEIESLKRRISDLE------DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
..
gi 1622996213 728 KV 729
Cdd:COG1579 167 EL 168
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
439-963 |
1.32e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 439 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE--EAIQLKKISEAGKDllYKQLSGRLQLVNKLRQEALDLE 516
Cdd:PRK01156 171 LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEksHSITLKEIERLSIE--YNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 517 LQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLE 596
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAII 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 597 EQLTEGQIAANEALKK-----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQerdQLEIVAMDAE 671
Cdd:PRK01156 329 KKLSVLQKDYNDYIKKksrydDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISE---ILKIQEIDPD 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAE------ANQLKEE-LEKVTRLTQLEQSALQAEL 744
Cdd:PRK01156 406 AIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEkSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 745 EK-ERQALKNALGKAQFSEEKEQENSElhaKLKHLQDDNNLLKQ---QLKDFQNHLNHVVDGLVRPEEVAAR-----VDE 815
Cdd:PRK01156 486 REiEIEVKDIDEKIVDLKKRKEYLESE---EINKSINEYNKIESaraDLEDIKIKINELKDKHDKYEEIKNRykslkLED 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 816 LRRKLKLGTGEM---------NIHSPSDVLGKSLADLQKQFSEILAR---------SKWERDEAQVR----ERKLQEEMA 873
Cdd:PRK01156 563 LDSKRTSWLNALavislidieTNRSRSNEIKKQLNDLESRLQEIEIGfpddksyidKSIREIENEANnlnnKYNEIQENK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 874 LQQEKLATGQEEFRQacERALEARMNFDKRQHEARIQQMENEIHY----LQENLKSMEEIQGLTDLQLQEADEEKERILA 949
Cdd:PRK01156 643 ILIEKLRGKIDNYKK--QIAEIDSIIPDLKEITSRINDIEDNLKKsrkaLDDAKANRARLESTIEILRTRINELSDRIND 720
|
570
....*....|....
gi 1622996213 950 QLRELEKKKKLEDA 963
Cdd:PRK01156 721 INETLESMKKIKKA 734
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
1.33e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.77 E-value: 1.33e-05
10 20 30
....*....|....*....|....*....|..
gi 1622996213 148 KLRELNLSYNKISKIEGIENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1478-1693 |
1.46e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1478 EELERRAQETAVNLVKAD-------QQLRSLQADAKDLEQHK-IKQEEILKEINKIVAAKDSdfqcLSKKKEKLTEELQK 1549
Cdd:COG1196 175 EEAERKLEATEENLERLEdilgeleRQLEPLERQAEKAERYReLKEELKELEAELLLLKLRE----LEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1550 LQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALR 1629
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 1630 LGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSK 1693
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
572-759 |
2.23e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 572 QQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE 647
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 648 TLLQRLTEVEQERDQL----EIVAMDAE--NMRKELAELESALQEQHEvnaslqqtqgDLSAYEAELEARLNLRDAEANQ 721
Cdd:COG3206 244 ALRAQLGSGPDALPELlqspVIQQLRAQlaELEAELAELSARYTPNHP----------DVIALRAQIAALRAQLQQEAQR 313
|
170 180 190
....*....|....*....|....*....|....*...
gi 1622996213 722 LKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 759
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1328-1585 |
2.29e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1328 LEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfidgNVESLMTELE- 1406
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE----NVKSELKELEa 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1407 ------------------IEKSLKHH--EDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDA 1466
Cdd:TIGR02169 766 rieeleedlhkleealndLEARLSHSriPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1467 K--RSLLQTESDA-----EELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKK 1539
Cdd:TIGR02169 846 KeqIKSIEKEIENlngkkEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1622996213 1540 KEKLTEELQKLQKDIEmAERNEDHHLQVLKESEVLLQAKRAELEKL 1585
Cdd:TIGR02169 926 LEALEEELSEIEDPKG-EDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1327-1653 |
3.42e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1327 RLEDIMQHLKSKKREERWMRAskrQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELE 1406
Cdd:TIGR00606 302 QLNDLYHNHQRTVREKERELV---DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1407 IEkSLKHHEDIVDEIECIEKTLLKRRS-ELREADRLLAEAESELSCTKEktknAVEKFTDAKRSLLQTESDAEELERRAQ 1485
Cdd:TIGR00606 379 LD-GFERGPFSERQIKNFHTLVIERQEdEAKTAAQLCADLQSKERLKQE----QADEIRDEKKGLGRTIELKKEILEKKQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1486 ETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNedHHL 1565
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN--HHT 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1566 QVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKK---EELHLLQGSMVQAKADLQEaLRLGETEVTEKCNHI 1642
Cdd:TIGR00606 532 TTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKqleDWLHSKSKEINQTRDRLAK-LNKELASLEQNKNHI 610
|
330
....*....|..
gi 1622996213 1643 R-EVKSLLEELS 1653
Cdd:TIGR00606 611 NnELESKEEQLS 622
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-728 |
3.69e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 245 RSLESLEGQPVTTQDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEeamlqkqsCEEL 324
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE--------IEKR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 325 KSDLNTKNELLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIdkapdespyigksrykrnmfatesyi 404
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLK--ELEKRLEELEERHELYEEA-------------------------- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 405 idsaqavqikkMEPDEQLRNDHMNLRGHTPldtqlEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI-QL 483
Cdd:PRK03918 368 -----------KAKKEELERLKKRLTGLTP-----EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 484 KK-----------ISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKE----IKDLQIA--IDSLDSK 546
Cdd:PRK03918 432 KKakgkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKeselIKLKELAeqLKELEEK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 547 DPKHSHMKAQKSGKE-----QQLDIMNKQYQQLES---RLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVI 618
Cdd:PRK03918 512 LKKYNLEELEKKAEEyeklkEKLIKLKGEIKSLKKeleKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 619 SGLQEyLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQ 698
Cdd:PRK03918 592 ERLKE-LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE 670
|
490 500 510
....*....|....*....|....*....|....*
gi 1622996213 699 --GDLSAYEAELEARLNLRD---AEANQLKEELEK 728
Cdd:PRK03918 671 lsRELAGLRAELEELEKRREeikKTLEKLKEELEE 705
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
561-967 |
3.74e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 561 EQQLDIMNKQYQQLESRLDE--ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGV-----ISGLQEYLGTIKgQAT 633
Cdd:COG3096 285 ERALELRRELFGARRQLAEEqyRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALrqqekIERYQEDLEELT-ERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 634 QAQNECRKLRDEKETLLQ-RLTEVEQERDQLeivamdaenmRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-AR 711
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEaRLEAAEEEVDSL----------KSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGlPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 712 LNLRDAEANQ--LKEELEKVT-RLTQLEQ-----SALQAELEKERQALKNALGKAQFSE--EKEQENSELHAKLKHLQDD 781
Cdd:COG3096 434 LTPENAEDYLaaFRAKEQQATeEVLELEQklsvaDAARRQFEKAYELVCKIAGEVERSQawQTARELLRRYRSQQALAQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 782 NNLLKQQLKdfqnhlnhvvdglvrpeevaarvdELRRKLklgtgemnihspsdvlgKSLADLQKQFSEILARSKWERDEA 861
Cdd:COG3096 514 LQQLRAQLA------------------------ELEQRL-----------------RQQQNAERLLEEFCQRIGQQLDAA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 862 QVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQ 938
Cdd:COG3096 553 EELEELLAE----LEAQLEELEEQAAEAVEQRSELRQQLE--QLRARIKELAArapAWLAAQDALERLREQSGEALADSQ 626
|
410 420
....*....|....*....|....*....
gi 1622996213 939 EADEEKERILAQLRELEKKKKLEDAKSQE 967
Cdd:COG3096 627 EVTAAMQQLLEREREATVERDELAARKQA 655
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
277-803 |
3.76e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 277 RDLEKKMIETEElksKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDL-------NTKNELLKQKTIELTRACQKQ 349
Cdd:TIGR04523 57 KNLDKNLNKDEE---KINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLskinseiKNDKEQKNKLEVELNKLEKQK 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 350 YELEQELAFYK--IDAKFEPLNYYPSEYAEIDKApdespyigKSRYKRNMFATESYIIDSAQAVQIKKmepdEQLRNDHM 427
Cdd:TIGR04523 134 KENKKNIDKFLteIKKKEKELEKLNNKYNDLKKQ--------KEELENELNLLEKEKLNIQKNIDKIK----NKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 428 NLrghtpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNK 507
Cdd:TIGR04523 202 LL-------SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------TQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 508 LRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmKAQKSGKE--QQLDIMNKQYQQLESRLDEILSRI 585
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ-------KEQDWNKElkSELKNQEKKLEEIQNQISQNNKII 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 586 AKETEEIKDLEEQLTEGQiAANEALKKDLEGVISGLQeylgTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSE-SENSEKQRELEEKQNEIE----KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 666 vamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL---TQLEQSALQA 742
Cdd:TIGR04523 413 ---QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQK 489
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 743 ELEKERQALKNALGKAQFSEEK----EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGL 803
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKvkdlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-597 |
3.86e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 270 EEVERLERDLEKKMIETEELK----------SKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDlntknelLKQKT 339
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIEnrldelsqelSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEED-------LSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 340 IELTRACQKQYELEQElafykIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQ--IKKME 417
Cdd:TIGR02169 751 QEIENVKSELKELEAR-----IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEqkLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 418 PDEQLRNDHMN--LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeaiqlKKISEAGKDLly 495
Cdd:TIGR02169 826 LEKEYLEKEIQelQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----KERDELEAQL-- 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 496 KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQL----DIMNK-- 569
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIralePVNMLai 978
|
330 340
....*....|....*....|....*....
gi 1622996213 570 -QYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:TIGR02169 979 qEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
569-1123 |
4.19e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 569 KQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIKGQATQAQNECRKLRDEKET 648
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPE--------LREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 649 LLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEK 728
Cdd:PRK03918 257 LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 729 VTRLTQLEQsaLQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNnlLKQQLKDFQNHLNHVVDGLVRPEE 808
Cdd:PRK03918 337 EERLEELKK--KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 809 VAARVDELRRKLKLGTGEM-NIHSPSDVLGKSL-----ADLQKQFSEILARSKWERDEAQVRERKLQE-----EMALQQE 877
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELkKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKelrelEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 878 KLATGQEEFRQACERALEARMNFDKRQHEARIQQMENeihyLQENLKSME-EIQGLTD--LQLQEADEEKERILAQLREL 954
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKgEIKSLKKelEKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 955 EKKKKLEDAKSQEQVFGLDKELKKLKKAVAT------SDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRK 1028
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1029 AAQAARDLTRAEAEiELLQNLLRQKGEQFRLEMEKtgvgTGANSQVLEIEKLNETMERQRTEIARLQNVLDLtgsdnkgg 1108
Cdd:PRK03918 649 LEELEKKYSEEEYE-ELREEYLELSRELAGLRAEL----EELEKRREEIKKTLEKLKEELEEREKAKKELEK-------- 715
|
570
....*....|....*
gi 1622996213 1109 FENVLEEIAELRREV 1123
Cdd:PRK03918 716 LEKALERVEELREKV 730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
437-950 |
4.53e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 437 TQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkisEAG---KDLLYKQLSGRLQLVNKLRQEAL 513
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR-----GNGgdrLEQLEREIERLERELEERERRRA 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 514 DLELQMEKQKQEIAGKQKEIKDLQIAIdsldskdpkhshmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIK 593
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAALRAEA-------------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 594 DLEEQ---LTEGQIAANEALKKDLEGVISGLQ---EYLgtikgqatQAQNECRKLRDEKETLL--QRLT---EVEQERDQ 662
Cdd:COG4913 430 SLERRksnIPARLLALRDALAEALGLDEAELPfvgELI--------EVRPEEERWRGAIERVLggFALTllvPPEHYAAA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 663 LEIVamDAENMRKEL------AELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLR-------DAEanQLKEELEKV 729
Cdd:COG4913 502 LRWV--NRLHLRGRLvyervrTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRfdyvcvdSPE--ELRRHPRAI 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 730 TRLTQLEQS-----------------------ALQAELEKERQALKNALGKAQfseekeQENSELHAKLKHLQDdnnlLK 786
Cdd:COG4913 578 TRAGQVKGNgtrhekddrrrirsryvlgfdnrAKLAALEAELAELEEELAEAE------ERLEALEAELDALQE----RR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 787 QQLKDFQNHLNHVVDglvrPEEVAARVDELRRKLKlgtgemNIHSPSDVLgKSLADLQKQFSEILARSKWERDEAQVRER 866
Cdd:COG4913 648 EALQRLAEYSWDEID----VASAEREIAELEAELE------RLDASSDDL-AALEEQLEELEAELEELEEELDELKGEIG 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 867 KLQEEMALQQEKLATGQEEFRQACERA-LEARMNFDKRQHEARIQQMENEIhylQENLKsmEEIQGLTDlQLQEADEEKE 945
Cdd:COG4913 717 RLEKELEQAEEELDELQDRLEAAEDLArLELRALLEERFAAALGDAVEREL---RENLE--ERIDALRA-RLNRAEEELE 790
|
....*
gi 1622996213 946 RILAQ 950
Cdd:COG4913 791 RAMRA 795
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
560-957 |
4.59e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 560 KEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL---TEGQIAANE------ALKKDLEGVISGLQEYLGTIKG 630
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqaeTELCAEAEEmrarlaARKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 631 QATQAQNECRKLRDEKETLLQRLTEVEQERD--QLEIVAMDAE-----------------------NMRKELAELESALQ 685
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklQLEKVTTEAKikkleedillledqnsklskerkLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 686 EQHEVNASLQQTQGDLSAYEAELEARLNlrdaEANQLKEELEKVTRLTQLEQSALQ---AELEKERQALKNALGKaqfse 762
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQLAK----- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 763 eKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSL 840
Cdd:pfam01576 241 -KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLgeELEALKTELEDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 841 ADLQKQFSEILARSKWERDEAQVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDKRQheariQQMENEIHYLQ 920
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQE----MRQKHTQALEELTEQLEQAKRNKANLEKAK-----QALESENAELQ 390
|
410 420 430
....*....|....*....|....*....|....*..
gi 1622996213 921 ENLKSMEEIQgltdlqlQEADEEKERILAQLRELEKK 957
Cdd:pfam01576 391 AELRTLQQAK-------QDSEHKRKKLEGQLQELQAR 420
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
439-968 |
4.68e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 4.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 439 LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQ 518
Cdd:TIGR00618 302 VTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHI 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 519 MEKQKQEIAGKQKE---------IKDLQIAIDSLDS--------KDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEi 581
Cdd:TIGR00618 382 HTLQQQKTTLTQKLqslckeldiLQREQATIDTRTSafrdlqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH- 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 582 LSRIAKETEEIKDLEEQLTegQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERD 661
Cdd:TIGR00618 461 LQESAQSLKEREQQLQTKE--QIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 662 QLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQ 741
Cdd:TIGR00618 539 QLETS---EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 742 AELEKERQALKN---ALGKAQFSEEKEQENSELHAKLKHL------------QDDNNLLKQQLKDFQNHLNHVVDGLVRP 806
Cdd:TIGR00618 616 ALLRKLQPEQDLqdvRLHLQQCSQELALKLTALHALQLTLtqervrehalsiRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 807 EEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSLADLQKQfsEILARSKWERDEAQVRERKLQEEMALQQEKLATGQE 884
Cdd:TIGR00618 696 KEMLAQCQTLLRELetHIEEYDREFNEIENASSSLGSDLAAR--EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 885 EFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQeadEEKERILAQLRELEKK------- 957
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV---QEEEQFLSRLEEKSATlgeithq 850
|
570
....*....|..
gi 1622996213 958 -KKLEDAKSQEQ 968
Cdd:TIGR00618 851 lLKYEECSKQLA 862
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
667-893 |
5.07e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTR---LTQLEQSALQAE 743
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 744 LEKERQALKNALGKAQFSEEKEQENSELHAK--------LKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDE 815
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 816 LRRKLKlgtgemnihspsdVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERA 893
Cdd:COG4942 179 LLAELE-------------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
515-724 |
5.40e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 5.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhshmkaQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKD 594
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVDLSE--------EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGS 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 595 LEEQLTE-GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNecrkLRDEKETLLQRL-TEVEQERDQLEIvamDAEN 672
Cdd:COG3206 252 GPDALPElLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIA----LRAQIAALRAQLqQEAQRILASLEA---ELEA 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 673 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKE 724
Cdd:COG3206 325 LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
435-969 |
5.55e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.89 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRAT----EEFKQLEeaiqlkkiseagkdlLYKQLSGRLQlvNKlrq 510
Cdd:pfam10174 231 LQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTedreEEIKQME---------------VYKSHSKFMK--NK--- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 511 ealdlelqMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSH----MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIA 586
Cdd:pfam10174 291 --------IDQLKQELSKKESELLALQTKLETLTNQNSDCKQhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 587 KETEEIKDLEEQltEGQIAANEALKKD-----------LEGVISGLQEYLGTIKGQATQAQNECRKLRDEK---ETLLQR 652
Cdd:pfam10174 363 KKTKQLQDLTEE--KSTLAGEIRDLKDmldvkerkinvLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSsntDTALTT 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 653 LTEVEQERDQLeIVAMDAENMRKE---LAELESALQEQHEVNASLQQTQGDLSAYEAELearLNLRDAEANQLKEELEKV 729
Cdd:pfam10174 441 LEEALSEKERI-IERLKEQREREDrerLEELESLKKENKDLKEKVSALQPELTEKESSL---IDLKEHASSLASSGLKKD 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 730 TRLTQLEqsalqAELEKERQ---ALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRP 806
Cdd:pfam10174 517 SKLKSLE-----IAVEQKKEecsKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREV 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 807 EEvaarvDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQ-EKLATGQEE 885
Cdd:pfam10174 592 EN-----EKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQlEELMGALEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 886 FRQACErALEARMNFDKRQHEARIQQMENeihYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKledaKS 965
Cdd:pfam10174 667 TRQELD-ATKARLSSTQQSLAEKDGHLTN---LRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSKKK----KT 738
|
....
gi 1622996213 966 QEQV 969
Cdd:pfam10174 739 QEEV 742
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-220 |
7.88e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 42.13 E-value: 7.88e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 170 NLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL--QDISKLKPLQDL 220
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspGAFSGLPSLRYL 54
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1349-1601 |
8.47e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 8.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1349 KRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESlmteleiekslkhhEDIVDEIECIEKTL 1428
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA--------------KLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1429 LKRRSELREADRLLAEAESELSCTKEKTKNAVEK--FTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQAdak 1506
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1507 dleqhkikqeEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEV---LLQAKRAELE 1583
Cdd:COG3206 306 ----------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVareLYESLLQRLE 375
|
250
....*....|....*...
gi 1622996213 1584 KLKSQVTSQQQEMAVLDR 1601
Cdd:COG3206 376 EARLAEALTVGNVRVIDP 393
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
76-205 |
8.80e-05 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 47.09 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 76 SHAGVRYITEALikkltkQDNLALiKSLNLSLSKDGGKKFKYI-ENLEKCVKLEVLNLSYNLIGK------IEKLDKLLK 148
Cdd:COG5238 277 GAEGAIALAKAL------QGNTTL-TSLDLSVNRIGDEGAIALaEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTT 349
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 149 LRELNLSYNKISK------IEGIENMCNLQKLNLAGNEI-EHIPVWLGKKLK--SLRVLNLKGNKI 205
Cdd:COG5238 350 LHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQtnRLHTLILDGNLI 415
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
76-181 |
9.40e-05 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 46.58 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 76 SHAGVRYITEALikklTKQDNLALIKSLNLSLSKDGGKKFKyiENLEKCVKLEVLNLSYNLIGK--IEKLDKLLK----- 148
Cdd:cd00116 178 GDAGIRALAEGL----KANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDagAAALASALLspnis 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 1622996213 149 LRELNLSYNKI------SKIEGIENMCNLQKLNLAGNEI 181
Cdd:cd00116 252 LLTLSLSCNDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
455-1100 |
9.63e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 9.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 455 ELHDEIEKAEQQI-------------LRATEEFKQLEEAIQLKKISEAGK-DLLYKQLSGRLQLVNKLRQEALDLELQME 520
Cdd:pfam02463 174 ALKKLIEETENLAeliidleelklqeLKLKEQAKKALEYYQLKEKLELEEeYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 521 KQKQEIAGKQKEIKDLQIAIDSLDSKdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT 600
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEK--EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 601 EGQIAANEALKKDLEGVISglQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERD-QLEIVAMDAENM------ 673
Cdd:pfam02463 332 KEKEEIEELEKELKELEIK--REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAkLKEEELELKSEEekeaql 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 674 -----RKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQ-SALQAELEKE 747
Cdd:pfam02463 410 llelaRQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQlVKLQEQLELL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 748 RQALKNALGKAQFSEEKEQENS-----------------------------ELHAKLKHLQDDNNLLKQQLKDFQnHLNH 798
Cdd:pfam02463 490 LSRQKLEERSQKESKARSGLKVllalikdgvggriisahgrlgdlgvavenYKVAISTAVIVEVSATADEVEERQ-KLVR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 799 VVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKW------ERDEAQVRERKLQEEM 872
Cdd:pfam02463 569 ALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEgilkdtELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 873 ALQQEKLATGQEEFRQACERALEARMNFDKRQhEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLR 952
Cdd:pfam02463 649 RKGVSLEEGLAEKSEVKASLSELTKELLEIQE-LQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 953 ELEKKKKLEDAKSQEQVFGLDKELKK--LKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERfSRKAA 1030
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEksRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE-ELRAL 806
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1031 QAARDLTRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDL 1100
Cdd:pfam02463 807 EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKE 876
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
438-793 |
1.04e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKqleeaIQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 515
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLK-----KNKDKINKLNSDLskINSEIKNDKEQKNKLEVELNKL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 516 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhSHMKAQKSGKEQQLDIMNKQYQQLESRLDEI----------LSRI 585
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKELEKLNNKY---NDLKKQKEELENELNLLEKEKLNIQKNIDKIknkllklellLSNL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 586 AKETEEIKDLEEQLTEGQiAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR04523 207 KKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 666 VAMDAENMRKELAELESALQEQ--HEVNASLQQTQGDLSAYEAELeARLNLRDAEANQLKEELEKVTRLTQLEQSALQAE 743
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQI-SQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 744 LEKERQALKNAL----GKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:TIGR04523 365 LEEKQNEIEKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-601 |
1.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 350 YELEQEL-----AFYKIDAKFEPLNyypseyAEIDKAPDEspyigksrykrnmFATESYIIDSAQA--------VQIKKM 416
Cdd:TIGR02168 764 EELEERLeeaeeELAEAEAEIEELE------AQIEQLKEE-------------LKALREALDELRAeltllneeAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 417 EPDEQLRNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYK 496
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 497 QLSGRL----QLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLqiAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQ-- 570
Cdd:TIGR02168 905 ELESKRselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEE--YSLTLEEAEALENKIEDDEEEARRRLKRLENKik 982
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1622996213 571 ------------YQQLESRLDEILSRIAKETEEIKDLEEQLTE 601
Cdd:TIGR02168 983 elgpvnlaaieeYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1453-1671 |
1.15e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1453 KEKTKNAVEKFTDAKRSLLQTESDAEELERraqetavnlvkadqQLRSLQADAKDLEQHKIKQEEiLKEINKIVAAKDsd 1532
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELER--------------QLKSLERQAEKAERYKELKAE-LRELELALLVLR-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1533 FQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHL 1612
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 1613 LQGSMVQAKA----------DLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLT 1671
Cdd:TIGR02168 314 LERQLEELEAqleeleskldELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1352-1666 |
1.50e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1352 SEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfiDGNVESLMTELE-------IEKSLKHHEDIVDEIECI 1424
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVEgsphvetIEEDRERVEELEAELEDL 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1425 EKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAvnlVKADQQlrslQAD 1504
Cdd:PRK02224 488 EEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE---AEAEEK----REA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1505 AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSK------KKEKLTEELQKLQ-KDIEMAERNEDH--HLQVLKESEVLL 1575
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAEDEIERLReKREALAELNDERreRLAEKRERKREL 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1576 QAK--RAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGS--MVQAKADLQEALRLGETEVTEKCNHIREVKSLLEE 1651
Cdd:PRK02224 640 EAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigAVENELEELEELRERREALENRVEALEALYDEAEE 719
|
330
....*....|....*
gi 1622996213 1652 LSFQKGELNVQISER 1666
Cdd:PRK02224 720 LESMYGDLRAELRQR 734
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1428-1687 |
1.69e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1428 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQetavnlvKADQQLRSLQADAKD 1507
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-------KLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1508 LEQHKikqeeilkeinkivAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLqvlkesevlLQAKRAELEKLKS 1587
Cdd:TIGR02169 749 LEQEI--------------ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR---------IPEIQAELSKLEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1588 QVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1667
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLE----KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
250 260
....*....|....*....|
gi 1622996213 1668 TQLTLIKQEIEKEEENLQVV 1687
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLREL 901
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1487-1672 |
1.91e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1487 TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQ 1566
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1567 VLKES--------------EVLLQAK-------RAE-LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADL 1624
Cdd:COG3883 87 ELGERaralyrsggsvsylDVLLGSEsfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1622996213 1625 QEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTL 1672
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
420-755 |
1.95e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 420 EQLRNDHMNLRGHTPLDTQLEDKEKKISAAQTRLSEL---HDEIEKAEQQILRATEEFKQLEEAIQlkkiseagkDLLYK 496
Cdd:COG4717 115 REELEKLEKLLQLLPLYQELEALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELE---------ELLEQ 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 497 QLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDI---------- 566
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglg 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 567 ---------------------------MNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALK--KDLEGV 617
Cdd:COG4717 266 gsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelLELLDR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 618 ISGLQEYLGTIKGQATQAQNECrkLRDEKETLLQR--LTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASL- 694
Cdd:COG4717 346 IEELQELLREAEELEEELQLEE--LEQEIAALLAEagVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELl 422
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 695 -QQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNAL 755
Cdd:COG4717 423 eALDEEELEEELEELEEELEELEEELEELREELAELeAELEQLEEDGELAELLQELEELKAEL 485
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
483-788 |
2.10e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 483 LKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDS-----------LDSKDPKHS 551
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEkenkmkdltflLEESRDKAN 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 552 HMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE----------QLTEGQIAANEALKKDLEGVISGL 621
Cdd:pfam05483 272 QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEdlqiatkticQLTEEKEAQMEELNKAKAAHSFVV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 622 QEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEV---NASLQQTQ 698
Cdd:pfam05483 352 TEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 699 GDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQL---EQSALQAELEKERqaLKNALGKAQFS----EEKE--QENS 769
Cdd:pfam05483 432 EELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHylkEVEDLKTELEKEK--LKNIELTAHCDklllENKEltQEAS 509
|
330
....*....|....*....
gi 1622996213 770 ELHAKLKHLQDDNNLLKQQ 788
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQ 528
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
569-961 |
2.35e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 569 KQYQQLESRLDEILSRIAKETEEIKDLE------EQLTEGQIAAneALKKDLEGVISGLQEYLGTIKGQATQAQNECRKL 642
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQrlhqafSRFIGSHLAV--AFEADPEAELRQLNRRRVELERALADHESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 643 RDEKETLLQRLTEVEQERDQLEIvaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEArlnLRDAEAN-- 720
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNL--LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV---LQSDPEQfe 938
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 721 QLKEELEKVTrlTQLEQSALQAELEKERQALKNALG--KAQFSEEKEQENSE-LHAKLKHLQDDNNLLKQQLKDFQNHL- 796
Cdd:PRK04863 939 QLKQDYQQAQ--QTQRDAKQQAFALTEVVQRRAHFSyeDAAEMLAKNSDLNEkLRQRLEQAEQERTRAREQLRQAQAQLa 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 797 --NHVVDGLVRPEEVAAR-VDELRRKLKlgtgEMNIHSPSDVLGKSLADlQKQFSEILARSKWERDEAQVRERKLQEEMA 873
Cdd:PRK04863 1017 qyNQVLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMD 1091
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 874 LQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIH-----YLQ-ENLKSMEEIqGLTDLQLQEADEEKERi 947
Cdd:PRK04863 1092 NLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHrrelaYLSaDELRSMSDK-ALGALRLAVADNEHLR- 1169
|
410
....*....|....
gi 1622996213 948 lAQLRELEKKKKLE 961
Cdd:PRK04863 1170 -DVLRLSEDPKRPE 1182
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
439-667 |
2.41e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 439 LEDKEKKISAAQTRLSELHDE----IEKAEQQILRATEEFKQLEeaIQLKKISEAgkdllykqlsgrlqlVNKLRQEALD 514
Cdd:PHA02562 204 IEEQRKKNGENIARKQNKYDElveeAKTIKAEIEELTDELLNLV--MDIEDPSAA---------------LNKLNTAAAK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 515 LELQMEKQkqeiagkQKEIKDLQ------IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:PHA02562 267 IKSKIEQF-------QKVIKMYEkggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 589 TEEIKDLEEQltEGQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEVEQERDQLEIVA 667
Cdd:PHA02562 340 LELKNKISTN--KQSLITLVDKAKKVKAAIEELQAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1424-1584 |
2.90e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1424 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ--ETAVNLVKADQQLRSL 1501
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1502 QADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAernedhhLQVLKESEVLLQAKRAE 1581
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 1622996213 1582 LEK 1584
Cdd:COG1579 168 LAA 170
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
553-757 |
3.01e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 553 MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALK--KDLEGVISGLQ--EYLGTI 628
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 629 KGQATQAQNECRKLRDEKETLLqrltEVEQERDQLEIVAM----DAENMRKELAELEsaLQEQHEvnaslqQTQGDLSAY 704
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLG--FERLEL------EEEGTPSEL 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 705 EAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAEL--EKERQALKNALGK 757
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLeiELERAEALSKFLK 271
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
507-764 |
3.45e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 507 KLRQEALDLEL--QMEK-QKQEIAGKQKEIKDLQIAIDSLDSKdpkhshMKAQKSGKEQQldimNKQYQQLESRLDEILS 583
Cdd:PHA02562 154 KLVEDLLDISVlsEMDKlNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQ----RKKNGENIARKQNKYD 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 584 RIAKETEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE--TLLQ-------RLT 654
Cdd:PHA02562 224 ELVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 655 EVEQERDQLEIVAMDAENMRKELAELESALQEQ----HEVNASLQQTQGDLSAYeaelearlnlrDAEANQLKEELEKVT 730
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKISTNKQSLITL-----------VDKAKKVKAAIEELQ 371
|
250 260 270
....*....|....*....|....*....|....
gi 1622996213 731 RLTQLEQSALqAELEKERQALKNAlgKAQFSEEK 764
Cdd:PHA02562 372 AEFVDNAEEL-AKLQDELDKIVKT--KSELVKEK 402
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
438-961 |
3.70e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEA-------IQLKKISEAGKDLLYKQLSGRLQLVNK-LR 509
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKkdhltkeLEDIKMSLQRSMSTQKALEEDLQIATKtIC 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 510 QEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKdPKHSHMKAQKSgkEQQLDIMNKQYQQLESRLDEILSRIAKET 589
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL-LRTEQQRLEKN--EDQLKIITMELQKKSSELEEMTKFKNNKE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 590 EEIKDLEEQLTEGQ--IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA 667
Cdd:pfam05483 405 VELEELKKILAEDEklLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 668 MD----AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARL----NLRDAEANqLKEELEKVtrltqleqsa 739
Cdd:pfam05483 485 LKnielTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLkqieNLEEKEMN-LRDELESV---------- 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 740 lQAELEKERQALKNALGKAQFSEEK-EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRR 818
Cdd:pfam05483 554 -REEFIQKGDEVKCKLDKSEENARSiEYEVLKKEKQMKILENKCNNLKKQIENKNKNI----------EELHQENKALKK 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 819 KLKLGTGEMNIHS-PSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQ---EKLATGQEEFRQACERAL 894
Cdd:pfam05483 623 KGSAENKQLNAYEiKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKaiaDEAVKLQKEIDKRCQHKI 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 895 E---ARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLR-ELEKKKKLE 961
Cdd:pfam05483 703 AemvALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEiEKEEKEKLK 773
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1317-1512 |
4.66e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1317 EHHNLENEVSRLEDIMQHLKSKKREERWmraskRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDG 1396
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRL-----ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1397 NveslmtelEIEkSLKHhedivdEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKftdAKRSLLQTESD 1476
Cdd:COG4913 338 D--------RLE-QLER------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|....*.
gi 1622996213 1477 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1512
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
442-537 |
4.76e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 442 KEKKISAAQtrlSELHDEIEKAEQQILRATEEFKQLEEAIQLKKiseagkdllyKQLSGRLQLVNKLRQEALDLELQMEK 521
Cdd:PRK12704 55 KKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEKRLLQKE----------ENLDRKLELLEKREEELEKKEKELEQ 121
|
90
....*....|....*.
gi 1622996213 522 QKQEIAGKQKEIKDLQ 537
Cdd:PRK12704 122 KQQELEKKEEELEELI 137
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
572-789 |
5.15e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 572 QQLESRLDEILSRIAKETEE---IKDLEEQLTegQIAANEALKKDLEgvisglqeylgTIKGQATQAQNECRKLRDEket 648
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDklvQQDLEQTLA--LLDKIDRQKEETE-----------QLKQQLAQAPAKLRQAQAE--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 649 lLQRLTEveqerDQLEIVAMDAENMrkELAELESALQEqheVNASLQQTQGDLSAYEAE--------------------- 707
Cdd:PRK11281 103 -LEALKD-----DNDEETRETLSTL--SLRQLESRLAQ---TLDQLQNAQNDLAEYNSQlvslqtqperaqaalyansqr 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 708 -------------------------LEARLNLRDAEANQLKEELEKVTRLTQLEQS------ALQAELEKERQALKNALG 756
Cdd:PRK11281 172 lqqirnllkggkvggkalrpsqrvlLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKqrdyltARIQRLEHQLQLLQEAIN 251
|
250 260 270
....*....|....*....|....*....|....*..
gi 1622996213 757 --KAQFSEE--KEQENSELHAKLKHlqddNNLLKQQL 789
Cdd:PRK11281 252 skRLTLSEKtvQEAQSQDEAARIQA----NPLVAQEL 284
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1353-1591 |
5.17e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1353 EKEMEELHHNIDDLLQEKKSLECEVEELH----RTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTL 1428
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEeqreQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1429 LKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLlqtESDAEELERRAQETAVNLVKADQQLRSLQADAKDL 1508
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1509 EQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEelqkLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ 1588
Cdd:PRK02224 355 EERAEELREEAAELESELEEAREA---VEDRREEIEE----LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
...
gi 1622996213 1589 VTS 1591
Cdd:PRK02224 428 EAE 430
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
435-976 |
5.22e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 435 LDTQLEDKEKKISAA---QTRLSELHDEIEKAEQQILRATEEFKQLEEaiQLKKISEagkdlLYKQLSGRLQLVNKLRQE 511
Cdd:PRK03918 174 IKRRIERLEKFIKRTeniEELIKEKEKELEEVLREINEISSELPELRE--ELEKLEK-----EVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 512 ALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKaqksGKEQQLDIMNKQYQQLESRLDEILSRIAKETEE 591
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK----EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 592 IKDLEEQLTEGQiaANEALKKDLEGVISGLQEYLGTIKGQAtQAQNECRKLRDEKETLLQRLTEVEQERDQLEIvamdaE 671
Cdd:PRK03918 323 INGIEERIKELE--EKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKEL-----E 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 672 NMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA---------RLNLRDAEANQLKEELEKVTRLtqleqSALQA 742
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgRELTEEHRKELLEEYTAELKRI-----EKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 743 ELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDdnnlLKQQLKDFQnhlnhvvdglvrPEEVAARVDELRR-KLK 821
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE----LEEKLKKYN------------LEELEKKAEEYEKlKEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 822 LGTGEMNIHSPSDVLgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARmnfd 901
Cdd:PRK03918 534 LIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK---- 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 902 krQHEARIQQMENEIHYLQENLKSMEEiqgltdlQLQEADEEKERILAQLRELEKK--------KKLEDAKSQEQVFGLD 973
Cdd:PRK03918 609 --DAEKELEREEKELKKLEEELDKAFE-------ELAETEKRLEELRKELEELEKKyseeeyeeLREEYLELSRELAGLR 679
|
...
gi 1622996213 974 KEL 976
Cdd:PRK03918 680 AEL 682
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
589-797 |
5.38e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.04 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 589 TEEIKDLEEQLTEGQIAANEALkkdlEGVISGLQEYlgtiKGQATQAQnECRKLRDEKETLLQRL-TEVEQERDQLEIVA 667
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEAL----QSALNWLEER----KGSLERAK-QYQQVIDNFPKLSAELrQQLNNERDEPRSVP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 668 --MDAENMRKELAELESAL--------QEQ---HEVNASLQQTQGDLSayeaelEARLNLRDAEaNQLKEELEKVTRLTQ 734
Cdd:PRK10929 100 pnMSTDALEQEILQVSSQLleksrqaqQEQdraREISDSLSQLPQQQT------EARRQLNEIE-RRLQTLGTPNTPLAQ 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 735 LEQSALQAELEKeRQALKNALGKAQFSEEKEQENSELHAKLkhLQDDNNLLKQQLKDFQNHLN 797
Cdd:PRK10929 173 AQLTALQAESAA-LKALVDELELAQLSANNRQELARLRSEL--AKKRSQQLDAYLQALRNQLN 232
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1321-1529 |
5.44e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDL-LQEKKSLECEVEELhrtvqkrqqqKDFIDGNVE 1399
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKEL----------EPFYNEYLE 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1400 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSctKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE 684
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1480 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAK 1529
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1315-1667 |
5.44e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1315 VPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV---------- 1384
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleerhely 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1385 --------QKRQQQKDFIDGNVESLMTELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSC---- 1451
Cdd:PRK03918 365 eeakakkeELERLKKRLTGLTPEKLEKELEeLEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgre 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1452 -TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKiKQEEILKEINKIVAAKD 1530
Cdd:PRK03918 445 lTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK-ELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1531 sdfqclSKKKEKLTEELQKLQKDIEMAERnEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAV-----LDRQLGh 1605
Cdd:PRK03918 524 ------AEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFesveeLEERLK- 595
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 1606 KKEELHLLQGSMVQAKADLQ---EALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1667
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEreeKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1324-1581 |
5.66e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 5.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1324 EVSRLEDIMQHLKSKKREERWMRASKRQSE--KEMEELH--HNIDDLLQEKKSLECEVEELHRTVQKRQQQKdfidGNVE 1399
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADelKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE----ARIE 1595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1400 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1480 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQK-DIEMAE 1558
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEE 1755
|
250 260
....*....|....*....|...
gi 1622996213 1559 RNEDHHLQVLKESEVLLQAKRAE 1581
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
468-967 |
6.56e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 6.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 468 LRATEEFK-----QLEEAIQLKKISEAGKDLLYKQLSgrlQLVNKLRQEALDLELQMEkqkqeiaGKQKEIKDLQIAIDS 542
Cdd:pfam01576 491 LRQLEDERnslqeQLEEEEEAKRNVERQLSTLQAQLS---DMKKKLEEDAGTLEALEE-------GKKRLQRELEALTQQ 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 543 LDSKDPKHSHMKAQKSGKEQQLD--IMNKQYQ-QLESRLDEILSRIAKETEEIKDLEEQLTEGQIAAnEALKKDLEGVIS 619
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDdlLVDLDHQrQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRA-EAEAREKETRAL 639
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 620 GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE----IVAMDAENMRKELAELESALQEQHEVNASLQ 695
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELErskrALEQQVEEMKTQLEELEDELQATEDAKLRLE 719
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 696 QTqgdLSAYEAELEARLNLRDAEANQLKEELEKVTRltqleqsALQAELEKERQALKNAL-GKAQFSEEKEQENSELHAK 774
Cdd:pfam01576 720 VN---MQALKAQFERDLQARDEQGEEKRRQLVKQVR-------ELEAELEDERKQRAQAVaAKKKLELDLKELEAQIDAA 789
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 775 LKHLQDDNNLLKQ---QLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGTGEMnihspsdvlgksladlqKQFSEIL 851
Cdd:pfam01576 790 NKGREEAVKQLKKlqaQMKDLQRELE---EARASRDEILAQSKESEKKLKNLEAEL-----------------LQLQEDL 849
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 852 ARSKWERDEAQVRERKLQEEMALQQEKLATGQEEfrqaceralearmnfdKRQHEARIQQMENEIHYLQENLKSMEEIQG 931
Cdd:pfam01576 850 AASERARRQAQQERDELADEIASGASGKSALQDE----------------KRRLEARIAQLEEELEEEQSNTELLNDRLR 913
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1622996213 932 LTDLQLQEADEE--KERILAQLRE-----LEKKKKLEDAKSQE 967
Cdd:pfam01576 914 KSTLQVEQLTTElaAERSTSQKSEsarqqLERQNKELKAKLQE 956
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1336-1667 |
6.59e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1336 KSKKREERWMRASKRQSEKEMEELHHNIDDLlqEKKSLEC-EVEELHRTVQKRQQQKDFIDGNVESLMTELEIEK---SL 1411
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAA--KKKAEEKkKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKkaeEK 1430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1412 KHHEDIVDEIECIEKT--LLKRRSELREADRLLAEAESelsctKEKTKNAVEKFTDAKRsllqtesdAEELERRAQETAv 1489
Cdd:PTZ00121 1431 KKADEAKKKAEEAKKAdeAKKKAEEAKKAEEAKKKAEE-----AKKADEAKKKAEEAKK--------ADEAKKKAEEAK- 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1490 nlVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKL-----TEELQKLQ--KDIEMAERNED 1562
Cdd:PTZ00121 1497 --KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdelkkAEELKKAEekKKAEEAKKAEE 1574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1563 HHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAvldRQLghKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHI 1642
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA---EEA--KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
330 340
....*....|....*....|....*
gi 1622996213 1643 REVKSLLEELSFQKGELNVQISERK 1667
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDK 1674
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1397-1661 |
6.66e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1397 NVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEaesELSCTKEKTKNAVEKFTDAKRSLLqtesd 1476
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE---VLIQKFGRSLKAKKRFSLLKKETI----- 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1477 aeelerrAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEELQKLQKDIEM 1556
Cdd:COG5022 870 -------YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD---LIENLEFKTELIARLKKLLNN 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1557 AERNEDHHLQVLKESEVL-LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSM---VQAKADLQEALRLGE 1632
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELaelSKQYGALQESTKQLK 1019
|
250 260 270
....*....|....*....|....*....|..
gi 1622996213 1633 ---TEVTEKCNHIREVKSLLEELSFQKGELNV 1661
Cdd:COG5022 1020 elpVEVAELQSASKIISSESTELSILKPLQKL 1051
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1493-1596 |
6.71e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1493 KADQQLRSLQADAKD-LEQHKIKQEEILKEinKIVAAKD------SDFQCLSKKKEKlteELQKLQKDIEMAERNEDHHL 1565
Cdd:PRK12704 28 IAEAKIKEAEEEAKRiLEEAKKEAEAIKKE--ALLEAKEeihklrNEFEKELRERRN---ELQKLEKRLLQKEENLDRKL 102
|
90 100 110
....*....|....*....|....*....|.
gi 1622996213 1566 QVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1596
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEEL 133
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
458-728 |
6.81e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 458 DEIEKAEQQILRATEEFKQLEEAIQ--LKKISE-AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIagkqKEIK 534
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTelLNKYSAlAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI----KEIK 1575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 535 DLQIAIDsldskDPKHSHMKAQKSGKEQQLDIMNKQYQQLesRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDL 614
Cdd:TIGR01612 1576 KEKFRIE-----DDAAKNDKSNKAAIDIQLSLENFENKFL--KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKEN 1648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 615 EGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENmrkelaelESALQEQHEvnasL 694
Cdd:TIGR01612 1649 GDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIK--------EIAIANKEE----I 1716
|
250 260 270
....*....|....*....|....*....|....
gi 1622996213 695 QQTQGDLSAYEAELEARLNLRDAEANQLKEELEK 728
Cdd:TIGR01612 1717 ESIKELIEPTIENLISSFNTNDLEGIDPNEKLEE 1750
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
6.90e-04 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.77 E-value: 6.90e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1622996213 170 NLQKLNLAGNEIEHIPvwLGKKLKSLRVLNLKGN-KISSLQDISK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
436-725 |
7.36e-04 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 44.59 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 436 DTQLEDKEKKISAAQTRLSEL------HDEIEKAEQQILRATEEF-KQLEEaiQLKKISEAGKDLLYKQLsgrlqlvNKL 508
Cdd:pfam13779 481 DGDLSDAERRLRAAQERLSEAlergasDEEIAKLMQELREALDDYmQALAE--QAQQNPQDLQQPDDPNA-------QEM 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 509 RQEALDlelQMEKQKQEIA--GKQKEIKD----LQIAIDSLDSKDPKHSHMKAQKSGKEQQ---LDIMNKQyQQLesrLD 579
Cdd:pfam13779 552 TQQDLQ---RMLDRIEELArsGRRAEAQQmlsqLQQMLENLQAGQPQQQQQQGQSEMQQAMdelGDLLREQ-QQL---LD 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 580 EILSRIAKETEEIKDLEEQltEGQiaanealkkDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQe 659
Cdd:pfam13779 625 ETFRQLQQQGGQQQGQPGQ--QGQ---------QGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQALRRRLEELQD- 692
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 660 rdqlEIVAMDAENMRKELAElesALQEQHEVNASLQQTQGDlSAYEAELEARLNLRD---AEANQLKEE 725
Cdd:pfam13779 693 ----ELKELGGKEPGQALGD---AGRAMRDAEEALGQGDLA-GAVDAQGRALEALRKgaqQLAEAMQQQ 753
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1321-1587 |
7.45e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKREERWMRASK-------RQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1393
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTenieeliKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1394 IDgnvESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAEsELSCTKEKTKNAVEKFTDAKRSLLQT 1473
Cdd:PRK03918 240 IE---ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1474 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDsDFQCLSKKK-----EKLTEELQ 1548
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE-ELERLKKRLtgltpEKLEKELE 394
|
250 260 270
....*....|....*....|....*....|....*....
gi 1622996213 1549 KLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKS 1587
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-216 |
8.44e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 43.50 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 86 ALIKKLTKQDNLALIKSLNLSLSKDGGKKFkyIENLEKCV-KLEVLNLSYNLI--GKIEKLDKLL----KLRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALranrDLKELNLANNG 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 159 ISKiEGIENMC-------NLQKLNLAGNEIEHIPV----WLGKKLKSLRVLNLKGNKISSLqDISKLKP 216
Cdd:cd00116 177 IGD-AGIRALAeglkancNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDA-GAAALAS 243
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
550-729 |
8.87e-04 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 42.20 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 550 HSHMKAQKSGKEQQLDiMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISgLQEYLGTIK 629
Cdd:pfam13851 22 RNNLELIKSLKEEIAE-LKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEE--------LRKQLENYEK-DKQSLKNLK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 630 GQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKEL---AELESALQEQhevnaSLQQTQGDLSAYEA 706
Cdd:pfam13851 92 ARLKVLEKELKDLKWEHEVLEQRFEKVERERDELY---DKFEAAIQDVqqkTGLKNLLLEK-----KLQALGETLEKKEA 163
|
170 180
....*....|....*....|....*.
gi 1622996213 707 ELE---ARLNLRDAEANQLKEELEKV 729
Cdd:pfam13851 164 QLNevlAAANLDPDALQAVTEKLEDV 189
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
730-1121 |
1.03e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 730 TRLTQLEQSALQAELEKERQALKNALGKAqfSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEV 809
Cdd:COG4717 37 STLLAFIRAMLLERLEKEADELFKPQGRK--PELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 810 AARVDELRRKLKLGTgemnihspsdvLGKSLADLQKQFSEILARskWERDEAQVRERK-LQEEMALQQEKLATGQEEFRQ 888
Cdd:COG4717 115 REELEKLEKLLQLLP-----------LYQELEALEAELAELPER--LEELEERLEELReLEEELEELEAELAELQEELEE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 889 ACERALEArmnfdkrqHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQ 968
Cdd:COG4717 182 LLEQLSLA--------TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 969 VFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQN 1048
Cdd:COG4717 254 IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 1049 LLRQKGEQFRLEMEKtgvgtgANSQVLEIEKLNETMERQRTEiARLQNVLDLTGSDNKGGFENVLEEIAELRR 1121
Cdd:COG4717 334 LSPEELLELLDRIEE------LQELLREAEELEEELQLEELE-QEIAALLAEAGVEDEEELRAALEQAEEYQE 399
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-731 |
1.27e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 298 EEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAE 377
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 378 IDKapdespyigksryKRNMFATESYIIDSaQAVQIKK-MEPDEQLRNDHmnlrghtpldtqledKEKKIsaaqTRLSEL 456
Cdd:COG5022 890 DVK-------------SISSLKLVNLELES-EIIELKKsLSSDLIENLEF---------------KTELI----ARLKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 457 HDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDL--LYKQLsgrlqlvNKLRQEALDLELQMEKQKQEIAGKQKEIK 534
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYedLLKKS-------TILVREGNKANSELKNFKKELAELSKQYG 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 535 DLQIAIDSLDSKD----PKHSHMK---AQKSGKEQQLDI------MNKQYQQLESRLDEILSRiaKETEEIKDLEE---Q 598
Cdd:COG5022 1010 ALQESTKQLKELPvevaELQSASKiisSESTELSILKPLqklkglLLLENNQLQARYKALKLR--RENSLLDDKQLyqlE 1087
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 599 LTEGQIAANEALKKDLEGVIS-GLQEYLGTIKGQATQAQNecrkLRDEKETLLQRLTEVEQERDQLEIVAMDAENMrKEL 677
Cdd:COG5022 1088 STENLLKTINVKDLEVTNRNLvKPANVLQFIVAQMIKLNL----LQEISKFLSQLVNTLEPVFQKLSVLQLELDGL-FWE 1162
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 678 AELESALQEQHEVNaslqqTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTR 731
Cdd:COG5022 1163 ANLEALPSPPPFAA-----LSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFS 1211
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
581-1123 |
1.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 581 ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLgtikgqatQAQNECRKLRDEKETLLQRLTEVEQER 660
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYA--------ELQEELEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 661 DQLEIvamdaenmrkeLAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSAL 740
Cdd:COG4717 119 EKLEK-----------LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 741 QAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvRPEEVAARVDELRRKL 820
Cdd:COG4717 188 LATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEEELEQLENEL--------EAAALEERLKEARLLL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 821 KLGTGEMNIHSPSDVLGKSLADLQK----------QFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRqaC 890
Cdd:COG4717 253 LIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG--L 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 891 ERALEARMNFDKRQHEARIQQMENEIHYLQENLK---SMEEIQGLTDLQLQEADEEKERILAQLRELEKKKkledaksqe 967
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLAEAGVEDEEELRAALEQAEEYQELK--------- 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 968 qvfgldkelkklkkavatsdklatAELTIAKDQLKSLHGtvmkinqeraeelqeaerfSRKAAQAARDLTRAEAEIELLQ 1047
Cdd:COG4717 402 ------------------------EELEELEEQLEELLG-------------------ELEELLEALDEEELEEELEELE 438
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 1048 NllrqkgeqfrlemektgvgtgansqvlEIEKLNETMERQRTEIARLQNVLDLTGSDNKggFENVLEEIAELRREV 1123
Cdd:COG4717 439 E---------------------------ELEELEEELEELREELAELEAELEQLEEDGE--LAELLQELEELKAEL 485
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
145-206 |
1.37e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.27 E-value: 1.37e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 145 KLLKLRELNLSYNKIskiEG-----IENMCNLQKLNLAGNEIE-HIPVWLGKkLKSLRVLNLKGNKIS 206
Cdd:PLN03150 440 KLRHLQSINLSGNSI---RGnippsLGSITSLEVLDLSYNSFNgSIPESLGQ-LTSLRILNLNGNSLS 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
677-928 |
1.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKeELEKVTRLTQLEQSALQAELEKERQALKnalg 756
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 757 kaqfseEKEQENSELHAKLKHLQDDnnlLKQQLKD-FQNHLNHVVDGLVRPEEVAARVDELRRklklgtgeMNIHSPSDv 835
Cdd:COG4942 87 ------ELEKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQY--------LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 836 lgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEfrqacERALEARMNFDKRQHEARIQQMENE 915
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 1622996213 916 IHYLQENLKSMEE 928
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
608-793 |
1.42e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 608 EALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaenmrKELAELESALQEQ 687
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQ----------AEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 688 HEV----NASLQQTQGDLSAYEAELEA--------RLNLRD-----------------AEANQLKEELEKvtrlTQLEQS 738
Cdd:COG3883 85 REElgerARALYRSGGSVSYLDVLLGSesfsdfldRLSALSkiadadadlleelkadkAELEAKKAELEA----KLAELE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 739 ALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:COG3883 161 ALKAELEAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1364-1667 |
1.83e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1364 DDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL----EIEKSLKHHEDIVDEIECIEKTLLKRRSELREAD 1439
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLreinEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1440 RLLAEAESELSCTKEKTKNavekftdAKRSLLQTESDAEELERRAQEtavnlvkadqqLRSLQADAKDLEQHKIKQEEIL 1519
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRE-------LEERIEELKKEIEELEEKVKE-----------LKELKEKAEEYIKLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1520 KEINKIvaakdsdfqclSKKKEKLTEELQKLQKDIEMAERNEDHhlqvLKESEVLLQAKRAELEKLKSQVTSQQQEMAVL 1599
Cdd:PRK03918 307 DELREI-----------EKRLSRLEEEINGIEERIKELEEKEER----LEELKKKLKELEKRLEELEERHELYEEAKAKK 371
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622996213 1600 DRQLGHKKEelhlLQGSMVQAKADLQEALRLGETEVTEKcnhIREVKSLLEELSFQKGELNVQISERK 1667
Cdd:PRK03918 372 EELERLKKR----LTGLTPEKLEKELEELEKAKEEIEEE---ISKITARIGELKKEIKELKKAIEELK 432
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
440-791 |
1.85e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 43.01 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 440 EDKEKKISAAQTRLSELH----------DEIEKAEQQILRATEEF-KQLEEaIQLKKISEAGKDLLYKQLSGRLQlvnKL 508
Cdd:pfam15818 88 EIKEKEIEGLKETLKALQvskyslqkkvSEMEQKLQLHLLAKEDHhKQLNE-IEKYYATITGQFGLVKENHGKLE---QN 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 509 RQEALDLELQM----EKQKQEIAGKQKEIKdlQIAIDSLDSKDPKHSHMKAQKSgkeqQLDIMNKQYQQLESRLDEILSR 584
Cdd:pfam15818 164 VQEAIQLNKRLsalnKKQESEICSLKKELK--KVTSDLIKSKVTCQYKMGEENI----NLTIKEQKFQELQERLNMELEL 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 585 IAKETEEIKDLEE-------------QLTEGQIAANEALKKDLEgvisGLQEylgtiKGQATQAQNECR--KLRDEKETL 649
Cdd:pfam15818 238 NKKINEEITHIQEekqdiiisfqhmqQLLQQQTQANTEMEAELK----ALKE-----NNQTLERDNELQreKVKENEEKF 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 650 LQRLTEVEQerdQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKv 729
Cdd:pfam15818 309 LNLQNEHEK---ALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEHYNKLCNQKKFEEDKKFQNVPEVNNENSEMST- 384
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 730 trlTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKD 791
Cdd:pfam15818 385 ---EKSENLIIQKYNSEQEIREENTKSFCSDTEYRETEKKKGPPVEEIIIEDLQVLEKSFKN 443
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1319-1696 |
1.87e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1319 HNLENEVSRLEdimQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNV 1398
Cdd:TIGR04523 120 NKLEVELNKLE---KQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1399 ESLMTEL-EIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDA 1477
Cdd:TIGR04523 197 LKLELLLsNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1478 EELERRAQETavnlvkaDQQLRSLQADAKDLEQHkiKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMA 1557
Cdd:TIGR04523 277 EQNNKKIKEL-------EKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1558 ERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMavldRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTE 1637
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI----KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 1638 KCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKT 1696
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1318-1602 |
2.19e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1318 HHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKslecevEELHRTVQK--RQQQKDFID 1395
Cdd:TIGR04523 252 QTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKELKSelKNQEKKLEE 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1396 gnveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTES 1475
Cdd:TIGR04523 326 -------IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLES 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1476 DAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE 1555
Cdd:TIGR04523 399 KIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN 478
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1622996213 1556 MAERNEDHHLQVLKEsevllqaKRAELEKLKSQVTSQQQEMAVLDRQ 1602
Cdd:TIGR04523 479 KIKQNLEQKQKELKS-------KEKELKKLNEEKKELEEKVKDLTKK 518
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
304-580 |
2.27e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 304 DKLNKSLKEEAMLQKQSCEELKSDLNTK--------NELLKQKTIELTRAcQKQYELEQELAfYKIDAKFEPLNyypSEY 375
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQiktynkniEEQRKKNGENIARK-QNKYDELVEEA-KTIKAEIEELT---DEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 376 AEIDKaPDESPyiGKSRYKRNMFATESyiidSAQAVQIKKMEpdeqlrndHMNLRGHT-PLDTQ-LEDKEKKISAAQTRL 453
Cdd:PHA02562 244 LNLVM-DIEDP--SAALNKLNTAAAKI----KSKIEQFQKVI--------KMYEKGGVcPTCTQqISEGPDRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 454 SELhdeiekaeqqilraTEEFKQLEEAIQlkkiseagkdllykQLSGRLQLVNKLRQEALDLELQMEKQKQEIAGKQKEI 533
Cdd:PHA02562 309 KEL--------------QHSLEKLDTAID--------------ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKA 360
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1622996213 534 KDLQIAIDSLDSKDPKHshmKAQKSGKEQQLDIMNKQYQQLESRLDE 580
Cdd:PHA02562 361 KKVKAAIEELQAEFVDN---AEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
633-768 |
2.36e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 633 TQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARL 712
Cdd:PRK12705 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 713 NLRDAEANQLKEELEKVTRLTQLEQ-----SALQAELEKERQALKNA-LGKAQFSEEKEQEN 768
Cdd:PRK12705 119 LELEELEKQLDNELYRVAGLTPEQArklllKLLDAELEEEKAQRVKKiEEEADLEAERKAQN 180
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
287-749 |
2.61e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 287 EELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFE 366
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 367 PLNyypSEYAEIDKAPDESPYigksRYKRNMFATESYiidSAQAVQIKKMEPD-EQLRNDHMNLRGHTPLDT--QLEDKE 443
Cdd:COG4717 129 PLY---QELEALEAELAELPE----RLEELEERLEEL---RELEEELEELEAElAELQEELEELLEQLSLATeeELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 444 KKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISE------------------AGKDLLYKQLSGRLQLV 505
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearlllliaaallalLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 506 NKLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpKHSHMKAQKSGKEQQLDIMNKQYQQLEsRLDEILSRI 585
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEE-LEELLAALGLPPDLSPEELLELLDRIE-ELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 586 AKETEEIKdLEEQLTEGQIAANEALKKDLEGVISGLQEYlgtikgqatqaqNECRKLRDEKETLLQRLTEVEQERDQLeI 665
Cdd:COG4717 357 EELEEELQ-LEELEQEIAALLAEAGVEDEEELRAALEQA------------EEYQELKEELEELEEQLEELLGELEEL-L 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 666 VAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEA------NQLKEELEKVTRLTQLEQ-- 737
Cdd:COG4717 423 EALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQeleelkAELRELAEEWAALKLALEll 502
|
490
....*....|..
gi 1622996213 738 SALQAELEKERQ 749
Cdd:COG4717 503 EEAREEYREERL 514
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1324-1669 |
2.99e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1324 EVSRLEDIMQHLKS--KKREERWMRA---------------SKRQSEKEMeeLHHNIDDLLQEKKSLECE---VEELHRT 1383
Cdd:pfam15921 427 EVQRLEALLKAMKSecQGQMERQMAAiqgkneslekvssltAQLESTKEM--LRKVVEELTAKKMTLESSertVSDLTAS 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1384 VQKRQQQKDFIDGNVESLMTELEIE-KSLKHHEDIVDEIECIEKTLLKRRSELREADRLLA------EAESELSCTKEKT 1456
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDLKlQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEilrqqiENMTQLVGQHGRT 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1457 KNAVEkftdAKRSLLQTESDAEELErrAQETAVNLVKADQQLRSLQADAKDLEQHKIK----QEEILKEINKIVAAKD-- 1530
Cdd:pfam15921 585 AGAMQ----VEKAQLEKEINDRRLE--LQEFKILKDKKDAKIRELEARVSDLELEKVKlvnaGSERLRAVKDIKQERDql 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1531 --------SDFQCLSKKKE------------------KLTEELQKLQKDIEMA-------ERNEDHHLQVLKESEVLLQA 1577
Cdd:pfam15921 659 lnevktsrNELNSLSEDYEvlkrnfrnkseemetttnKLKMQLKSAQSELEQTrntlksmEGSDGHAMKVAMGMQKQITA 738
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1578 KRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQ------EALRLGETEVTEKcnhIREVKSLLEE 1651
Cdd:pfam15921 739 KRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNkmagelEVLRSQERRLKEK---VANMEVALDK 815
|
410
....*....|....*...
gi 1622996213 1652 LSFQKGELNvQISERKTQ 1669
Cdd:pfam15921 816 ASLQFAECQ-DIIQRQEQ 832
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
638-1128 |
3.03e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.43 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 638 ECRKLRDE----KETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQtqgdlsAYEAELEarln 713
Cdd:pfam07111 74 ELRRLEEEvrllRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEE------GSQRELE---- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 714 lrdaEANQLKEEleKVTRLTQLEQSALqAELEKERQALKNALGKAQFSEEKEQEnselhaKLKHLQDDNNLLKQQLKDFQ 793
Cdd:pfam07111 144 ----EIQRLHQE--QLSSLTQAHEEAL-SSLTSKAEGLEKSLNSLETKRAGEAK------QLAEAQKEAELLRKQLSKTQ 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 794 NHLNHVVD---------GLVRPEEVAARVDELRRKLKLGTGEMnihspsdvLGKSLADLQKQFsEILarskwerdeaQVR 864
Cdd:pfam07111 211 EELEAQVTlveslrkyvGEQVPPEVHSQTWELERQELLDTMQH--------LQEDRADLQATV-ELL----------QVR 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 865 ERKLQEEMALQQEKLATG-------QEEFRQACER----------ALEARMNFDKRQHEARIQQMENEIHYLQENLKSME 927
Cdd:pfam07111 272 VQSLTHMLALQEEELTRKiqpsdslEPEFPKKCRSllnrwrekvfALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQS 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 928 EIQGLTDLQLQE--ADEEKERILAQLRELEKKKKLEDAKSQEQvfgldkelkklkkAVATSDKLATAELTIAKDQLKSLH 1005
Cdd:pfam07111 352 QEQAILQRALQDkaAEVEVERMSAKGLQMELSRAQEARRRQQQ-------------QTASAEEQLKFVVNAMSSTQIWLE 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1006 GTVMKINQERAEELQEAERFSRKAAQA-------ARDLTRAEAEIE--------------LLQNLLRQKGEQFRLEME-- 1062
Cdd:pfam07111 419 TTMTRVEQAVARIPSLSNRLSYAVRKVhtikglmARKVALAQLRQEscpppppappvdadLSLELEQLREERNRLDAElq 498
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 1063 ------KTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTGSD---NKGGFENVLEEIAELRREVSYQND 1128
Cdd:pfam07111 499 lsahliQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQlevARQGQQESTEEAASLRQELTQQQE 573
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
529-957 |
3.23e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 529 KQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANE 608
Cdd:TIGR00618 161 KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 609 ALKKdlegvisgLQEYLgTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIvAMDAENMRKELAELESALQEQH 688
Cdd:TIGR00618 241 SHAY--------LTQKR-EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR-ARKAAPLAAHIKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 689 EVNASLQQTqgdlsayEAELEARLNLRDAEANQLKEELEKvtrlTQLEQSALQAELEKERQALKNALGKAQFSEEKEQEN 768
Cdd:TIGR00618 311 RIHTELQSK-------MRSRAKLLMKRAAHVKQQSSIEEQ----RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 769 S--ELHAKLKHLQDDNNLLKQQLKDFQNhLNHVVDGL------VRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSL 840
Cdd:TIGR00618 380 HihTLQQQKTTLTQKLQSLCKELDILQR-EQATIDTRtsafrdLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 841 ADLQKQFSEILARSKWERDEAQVRERKlQEEMALQQEKLATGQEEFRQACERALE----ARMNFDKRQHEARIQQMENEI 916
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQIHLQE-TRKKAVVLARLLELQEEPCPLCGSCIHpnpaRQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1622996213 917 HYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKK 957
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-618 |
3.32e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEK 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 350 YELEQELAfyKIDAKFEPLNYYPSEYAEIDKAPD---ESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDH 426
Cdd:TIGR04523 422 ELLEKEIE--RLKETIIKNNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 427 MNLRGHTPLDTQLEDKEKKISaaqtrlsELHDEIEKAEQQILRATEEFKQLEEAIqLKKISEAGKDLLYKQLSGRLQLVN 506
Cdd:TIGR04523 500 KLNEEKKELEEKVKDLTKKIS-------SLKEKIEKLESEKKEKESKISDLEDEL-NKDDFELKKENLEKEIDEKNKEIE 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 507 KLRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKdpkhshmkaqKSGKEQQLDIMNKQYQQLESRLDEILSRIA 586
Cdd:TIGR04523 572 ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK----------ISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
330 340 350
....*....|....*....|....*....|..
gi 1622996213 587 KETEEIKDLEEQLTEGQIAANEALKKDLEGVI 618
Cdd:TIGR04523 642 KLKQEVKQIKETIKEIRNKWPEIIKKIKESKT 673
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
578-686 |
3.49e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 578 LDEILSRIAKET----EEIKDLEEQLTEGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 653
Cdd:COG0542 395 IDEAAARVRMEIdskpEELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELI 470
|
90 100 110
....*....|....*....|....*....|...
gi 1622996213 654 TEVEQERDQLEIVAMDAENMRKELAELESALQE 686
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAE 503
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
509-864 |
3.68e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 509 RQEALDLELQMEKQKQEIAGKQKEIKDLQIaidSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKE 588
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARI---ELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 589 TEEIKDLEEQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAM 668
Cdd:pfam05557 78 NRLKKKYLEALNK-KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 669 DAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELeARLNLRDAEANQLKEELEKVTrltqlEQSALQAELEKER 748
Cdd:pfam05557 157 NLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSEL-ARIPELEKELERLREHNKHLN-----ENIENKLLLKEEV 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 749 QALKNALGKaqfsEEKEQEnselhaKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDEL-RRKLKLGTGEM 827
Cdd:pfam05557 231 EDLKRKLER----EEKYRE------EAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLqQREIVLKEENS 300
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1622996213 828 NIHSPSDVLGKSLADLQKQFSEILA-----RSKWERDEAQVR 864
Cdd:pfam05557 301 SLTSSARQLEKARRELEQELAQYLKkiedlNKKLKRHKALVR 342
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
508-1091 |
3.82e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 508 LRQEALDLELQMEKQKQEIAGKQKEIKDLqiaIDSLDSKDPKhSHMKAQKSGKEQQLDIMNKQYQQLESRLDEilsriaK 587
Cdd:pfam10174 135 LRKTLEEMELRIETQKQTLGARDESIKKL---LEMLQSKGLP-KKSGEEDWERTRRIAEAEMQLGHLEVLLDQ------K 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 588 ETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLrdeKETLLQRLTEVEQERDQLEIVA 667
Cdd:pfam10174 205 EKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQML---KTNGLLHTEDREEEIKQMEVYK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 668 MDAENMRKELAELESALQEQhevnaslqqtQGDLSAYEAELEArLNLRDAEANQ----LKEEL---EKVTRLTQLEQSAL 740
Cdd:pfam10174 282 SHSKFMKNKIDQLKQELSKK----------ESELLALQTKLET-LTNQNSDCKQhievLKESLtakEQRAAILQTEVDAL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 741 QAELEKERQALKNalgKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVaarVDELRRKL 820
Cdd:pfam10174 351 RLRLEEKESFLNK---KTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQ---LAGLKERV 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 821 K-LGTGEMNIHSPSDVLGKSLAD-------LQKQfSEILARSKWERDEAQVRERK-LQEEMALQQEKLATGQEEFRQACE 891
Cdd:pfam10174 425 KsLQTDSSNTDTALTTLEEALSEkeriierLKEQ-REREDRERLEELESLKKENKdLKEKVSALQPELTEKESSLIDLKE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 892 RALEARMNFDKRqhEARIQQMENEIHYLQENLKSMEEiQGLTDLQLQEADEEKERILAQLRELEK---KKKLEDAKSQEQ 968
Cdd:pfam10174 504 HASSLASSGLKK--DSKLKSLEIAVEQKKEECSKLEN-QLKKAHNAEEAVRTNPEINDRIRLLEQevaRYKEESGKAQAE 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 969 VfgldkelkklkkavatsDKLataeLTIAKDQLKSLHGTVMKINQeraeelqeaerFSRKAAQAARDLTRAEAEIELLQN 1048
Cdd:pfam10174 581 V-----------------ERL----LGILREVENEKNDKDKKIAE-----------LESLTLRQMKEQNKKVANIKHGQQ 628
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1622996213 1049 LLRQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEI 1091
Cdd:pfam10174 629 EMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQEL 671
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
601-761 |
3.93e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 41.25 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 601 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaeNMRKELAEL 680
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDL--------ARRRVLAPI 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 681 ESALQEQH-EVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 759
Cdd:pfam00529 136 GGISRESLvTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRAP 215
|
..
gi 1622996213 760 FS 761
Cdd:pfam00529 216 VD 217
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
563-797 |
3.99e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.98 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 563 QLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALKKDLEGVIS---GLQEYLGTIK-GQATQAQne 638
Cdd:pfam05622 184 QLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKL--------EALQKEKERLIIerdTLRETNEELRcAQLQQAE-- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 639 crklrdeketLLQRLTEVEQERDQLEIVAmdAENMRKELAEleSALQEQHEVNASLQQTQGDLSAYEAELEARLNlrdaE 718
Cdd:pfam05622 254 ----------LSQADALLSPSSDPGDNLA--AEIMPAEIRE--KLIRLQHENKMLRLGQEGSYRERLTELQQLLE----D 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 719 ANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLN 797
Cdd:pfam05622 316 ANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQSELQKKKEQIEELEPKQD 394
|
|
| DUF5082 |
pfam16888 |
Domain of unknown function (DUF5082); This entry contains proteins that are uncharacterized. |
508-629 |
4.00e-03 |
|
Domain of unknown function (DUF5082); This entry contains proteins that are uncharacterized.
Pssm-ID: 407125 [Multi-domain] Cd Length: 122 Bit Score: 38.82 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 508 LRQEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNK---------------QYQ 572
Cdd:pfam16888 1 LKTEISRLQAQIAQLRSEIAALEEKIERLKEAKTKLDAEKESLHDKKTKLQGPLNSSESWNGsnennydgirsnletSYQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622996213 573 QLESRLDEILSRIakeTEEIKDLEEQLTEgqiaanealkkdLEGVISGLQEYLGTIK 629
Cdd:pfam16888 81 NYVDELDELIDAI---EEEITRLENQINE------------AQGVIDTLQSQLNSLK 122
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
647-1098 |
4.03e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.82 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 647 ETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQqtqgDLSAYEAELEARLNLRDAEANQLKEEL 726
Cdd:COG5278 79 EPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVI----ALRRAGGLEAALALVRSGEGKALMDEI 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 727 EKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRP 806
Cdd:COG5278 155 RARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALEL 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 807 EEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEF 886
Cdd:COG5278 235 LAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAA 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 887 RQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQ 966
Cdd:COG5278 315 AAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 967 EQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELL 1046
Cdd:COG5278 395 IAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAAL 474
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1622996213 1047 QNLLRQKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVL 1098
Cdd:COG5278 475 AALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALAAALAAALA 526
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
750-1018 |
4.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 750 ALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRRKLKLGTGEMNi 829
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----------AALERRIAALARRIRALEQELA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 830 hspsdVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQAceralEARMNFDKRQHEARI 909
Cdd:COG4942 80 -----ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDA-----VRRLQYLKYLAPARR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 910 QQMEneihYLQENLKSMEEIQgltdLQLQEADEEKERILAQLRelEKKKKLEDAKSQEQvfgldkelkKLKKAVATSDKL 989
Cdd:COG4942 150 EQAE----ELRADLAELAALR----AELEAERAELEALLAELE--EERAALEALKAERQ---------KLLARLEKELAE 210
|
250 260
....*....|....*....|....*....
gi 1622996213 990 ATAELTIAKDQLKSLHGTVMKINQERAEE 1018
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1477-1644 |
4.12e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1477 AEELERRAQ---ETAVNLVKADQQLR-SLQADAKDLEQHKIKQEEILKEI-------NKIVAAKDSDFQCLSKKKEKLTE 1545
Cdd:PRK04863 962 TEVVQRRAHfsyEDAAEMLAKNSDLNeKLRQRLEQAEQERTRAREQLRQAqaqlaqyNQVLASLKSSYDAKRQMLQELKQ 1041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1546 ELQKL--QKDIEMAER---NEDHHLQVLKESevllQAKRAELEKlksQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQA 1620
Cdd:PRK04863 1042 ELQDLgvPADSGAEERaraRRDELHARLSAN----RSRRNQLEK---QLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
170 180
....*....|....*....|....
gi 1622996213 1621 KADLQEALRLGETEVTEKCNHIRE 1644
Cdd:PRK04863 1115 KAGWCAVLRLVKDNGVERRLHRRE 1138
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1369-1696 |
4.44e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1369 EKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEK--------SLKHHEDIVDEIECIEKTLLKRRSELREADR 1440
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKeilekkqeELKFVIKELQQLEGSSDRILELDQELRKAER 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1441 LLAEAE--SELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEI 1518
Cdd:TIGR00606 486 ELSKAEknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1519 LKEINKIVAAKDSdFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLL-------------QAKRAELEKL 1585
Cdd:TIGR00606 566 LGYFPNKKQLEDW-LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLssyedklfdvcgsQDEESDLERL 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1586 KSQVTSQQQEMAVLD----------RQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQ 1655
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAgatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1622996213 1656 KGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKT 1696
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN 765
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1317-1596 |
4.71e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 4.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1317 EHHNLENEVSRLEDIMQHLKSKKR--EERWMRASK------RQSEKEMEELH-----HNIddLLQEKKSLECEVEELHRT 1383
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKalEEDLQIATKticqltEEKEAQMEELNkakaaHSF--VVTEFEATTCSLEELLRT 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1384 VQKRQQQKdfiDGNVESLMTELEIEKSlkhhedivdEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEkf 1463
Cdd:pfam05483 368 EQQRLEKN---EDQLKIITMELQKKSS---------ELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEE-- 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1464 TDAKRSLLQTESDAEELERRAQETAVNLVKADQQ--LRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSdfqcLSKKKE 1541
Cdd:pfam05483 434 LKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEhyLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKE----LTQEAS 509
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1622996213 1542 KLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1596
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1321-1665 |
4.80e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1401 LMTELEIEKslKHHEDIvdeiecieKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:PRK01156 244 LSSLEDMKN--RYESEI--------KTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1481 ERRAQETAVNLVKAD---QQLRSLQADAKDLEQHKIKQEEILKEINKIvAAKDSDFQCLSKKKEKLTEELQKLQKDIEMA 1557
Cdd:PRK01156 311 KQILSNIDAEINKYHaiiKKLSVLQKDYNDYIKKKSRYDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1558 ERNEDHHLQVLKESEVLLQAKRAE----LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMV--------------- 1618
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgttlgeeksnh 469
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 1619 ------QAKADLQEALRLGETEVTEKCNHIREVKSLLEELsfQKGELNVQISE 1665
Cdd:PRK01156 470 iinhynEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL--ESEEINKSINE 520
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
1449-1663 |
5.14e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 41.57 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1449 LSCTKEKT-------KNAVEKFTDAKRSLLQTES-----DAEELERR-AQETAVNLVKADQQLRSlqadaKDLEQHKIKQ 1515
Cdd:pfam10168 482 LLCSKEDVtvdeplrGLQEDSFEDHIKSILQRSVsnpilSADKLSSPsPQECLQLLSRATQVFRE-----EYLKKHDLAR 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1516 EEILKEINkivaakdsdfqCLSKKKEKLTEELQKLQKD----IEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV-- 1589
Cdd:pfam10168 557 EEIQKRVK-----------LLKLQKEQQLQELQSLEEErkslSERAEKLAEKYEEIKDKQEKLMRRCKKVLQRLNSQLpv 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1590 -TSQQQEMAvldRQLGHKKEELHLLQGSMVQAK----------ADLQEALRLGETEVTEKcnHIREVKSLLEELSFQKGE 1658
Cdd:pfam10168 626 lSDAEREMK---KELETINEQLKHLANAIKQAKkkmnyqryqiAKSQSIRKKSSLSLSEK--QRKTIKEILKQLGSEIDE 700
|
....*
gi 1622996213 1659 LNVQI 1663
Cdd:pfam10168 701 LIKQV 705
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1353-1660 |
5.17e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1353 EKEMEELHHNIDDLLQEKKSLECEVEELHRTVqkrQQQKDFIDGNVeSLMTELEIEKSLKhhedivdeieciektllKRR 1432
Cdd:PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKLQRLH---QAFSRFIGSHL-AVAFEADPEAELR-----------------QLN 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1433 SELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR-----SLLQTESDAEELER------RAQETA-------VNLVKA 1494
Cdd:PRK04863 844 RRRVELERALADHESQEQQQRSQLEQAKEGLSALNRllprlNLLADETLADRVEEireqldEAEEAKrfvqqhgNALAQL 923
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1495 DQQLRSLQADAKDLEQHKIKQEEI-------------LKEINKIVAA-KDSDFQCLSKKKEKLTEelqKLQKDIEMAERN 1560
Cdd:PRK04863 924 EPIVSVLQSDPEQFEQLKQDYQQAqqtqrdakqqafaLTEVVQRRAHfSYEDAAEMLAKNSDLNE---KLRQRLEQAEQE 1000
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1561 EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLdrqlghkKEELHLLQgsmVQAKADLQEALRLGETEVTEKCN 1640
Cdd:PRK04863 1001 RTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQEL-------KQELQDLG---VPADSGAEERARARRDELHARLS 1070
|
330 340
....*....|....*....|.
gi 1622996213 1641 HIREVKSLLE-ELSFQKGELN 1660
Cdd:PRK04863 1071 ANRSRRNQLEkQLTFCEAEMD 1091
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1323-1670 |
5.21e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1323 NEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQqkdfIDGNVESLM 1402
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEA----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1403 TELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREA-DRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:COG4717 146 ERLEeLEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1481 ERRAQETAVNLVKADQQLR---------------SLQADAKDLEQHKIKQEEILKEINKIVAAkdsDFQCLSKKKEKLTE 1545
Cdd:COG4717 226 EEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLAL---LFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1546 ELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQemavLDRQLGHKKEELhLLQGSMVQAKADLQ 1625
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE----LLREAEELEEEL-QLEELEQEIAALLA 377
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1622996213 1626 EALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQL 1670
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL 422
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
566-750 |
5.22e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 566 IMNKQYQQLESRLDEILSRIAKETEEIKdlEEQLTEGQIAaNEALKKDLEGVISGLQEYLgtikgqatqAQNEcRKLRDE 645
Cdd:PRK12704 28 IAEAKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEE-IHKLRNEFEKELRERRNEL---------QKLE-KRLLQK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 646 KETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQE-QHEVNASLQQtqgdLSAYEAElEARLNLRDaeanQLKE 724
Cdd:PRK12704 95 EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEElIEEQLQELER----ISGLTAE-EAKEILLE----KVEE 165
|
170 180
....*....|....*....|....*...
gi 1622996213 725 EL--EKVTRLTQLEQsalQAELEKERQA 750
Cdd:PRK12704 166 EArhEAAVLIKEIEE---EAKEEADKKA 190
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
620-1051 |
5.52e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 41.49 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 620 GLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQG 699
Cdd:COG4995 14 LAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 700 DLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKA-QFSEEKEQENSELHAKLKHL 778
Cdd:COG4995 94 LALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAAlAAAAAAAAAAALLALALALA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 779 QDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWER 858
Cdd:COG4995 174 AAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 859 DEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQ 938
Cdd:COG4995 254 AAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALL 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 939 EADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEE 1018
Cdd:COG4995 334 ALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLL 413
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1622996213 1019 LQEAERFSRKAAQAARDLT-----------RAEAEIELLQNLLR 1051
Cdd:COG4995 414 AALALLLALAAYAAARLALlalieyiilpdRLYAFVQLYQLLIA 457
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1321-1461 |
5.62e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1321 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 1401 LmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVE 1461
Cdd:TIGR02169 446 K--ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASE 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
603-790 |
5.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaenmrKELAELE- 681
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE----------AELAELEk 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 682 --SALQEQhevnasLQQTQGDLS-----AYEAELEARLNL-----------------------RDAEANQLKEELEKVTR 731
Cdd:COG4942 91 eiAELRAE------LEAQKEELAellraLYRLGRQPPLALllspedfldavrrlqylkylapaRREQAEELRADLAELAA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622996213 732 LTQL------EQSALQAELEKERQALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLK 790
Cdd:COG4942 165 LRAEleaeraELEALLAELEEERAALEALKAeRQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1381-1610 |
5.72e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1381 HRTVQKRQQQKDFidgnveslmTELEIEKSLKHHEDIVDEIEciektllkRRSELREADRL-LAEAESELSCTKEKTKNA 1459
Cdd:pfam17380 281 QKAVSERQQQEKF---------EKMEQERLRQEKEEKAREVE--------RRRKLEEAEKArQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1460 VEKFTDAKRslLQTESDAEELER-RAQETAVNLVKADQQLR--------------SLQADAKDLEQHKIKQEEILKEINK 1524
Cdd:pfam17380 344 MERERELER--IRQEERKRELERiRQEEIAMEISRMRELERlqmerqqknervrqELEAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1525 IVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLK-SQVTSQQQEMAVLDRQL 1603
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKrDRKRAEEQRRKILEKEL 501
|
....*..
gi 1622996213 1604 GHKKEEL 1610
Cdd:pfam17380 502 EERKQAM 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1335-1653 |
6.02e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1335 LKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQqkdfidgnveslmtelEIEKSLKHH 1414
Cdd:TIGR04523 316 LKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN----------------EIEKLKKEN 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1415 EDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVEK-FTDAKRSLLQTESDAEELERRAQETAVNLVK 1493
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK-KLQQEKELLEKeIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1494 ADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEV 1573
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1574 LLQAKRAELEKLKSQVTSQQQEMAVLDRQlgHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELS 1653
Cdd:TIGR04523 539 KISDLEDELNKDDFELKKENLEKEIDEKN--KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLE 616
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
643-1047 |
6.03e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 643 RDEKETLLQRLTEVEQERdqleivamdaENMRKELAELESALQEQHEVNASLQQTQGDLsayEAELEA---RLNL-RDAE 718
Cdd:COG3096 277 ANERRELSERALELRREL----------FGARRQLAEEQYRLVEMARELEELSARESDL---EQDYQAasdHLNLvQTAL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 719 ANQlkeelEKVTRLtQLEQSALQAELEKERQALknalgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLN- 797
Cdd:COG3096 344 RQQ-----EKIERY-QEDLEELTERLEEQEEVV----------EEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDv 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 798 ---------HVVDGLVR-----------PEEVAARVDELRRKLKLGTGEmnihspsdVLGK----SLADLQK-QFSEILA 852
Cdd:COG3096 408 qqtraiqyqQAVQALEKaralcglpdltPENAEDYLAAFRAKEQQATEE--------VLELeqklSVADAARrQFEKAYE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 853 ----------RSK-WERDEAQVRERKLQEEMALQQEKLATGQEEFRQACEralearmnfdkRQHEARIQQMENEIHYLQE 921
Cdd:COG3096 480 lvckiageveRSQaWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLR-----------QQQNAERLLEEFCQRIGQQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 922 nLKSMEEIqgltDLQLQEADEEKERILAQLREL-----EKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAElti 996
Cdd:COG3096 549 -LDAAEEL----EELLAELEAQLEELEEQAAEAveqrsELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGE--- 620
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1622996213 997 akdQLKSLHGtVMKINQERAEELQEAERFSRKAAQAARDLtraEAEIELLQ 1047
Cdd:COG3096 621 ---ALADSQE-VTAAMQQLLEREREATVERDELAARKQAL---ESQIERLS 664
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
555-967 |
6.19e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 555 AQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQ 634
Cdd:pfam07888 52 AANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEE-----LEEKYKELSASSEELSEEKDALLAQRAA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 635 AQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQeqhevnASLQQTQGDLSAYEAELEARLNL 714
Cdd:pfam07888 127 HEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ------AKLQQTEEELRSLSKEFQELRNS 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 715 RDAEANQLKEELEKVTRLTQLEQSALQAELEKErqALKNALGKAQFSEEKEQENSELhaklkhlqddnnlLKQQLKDFQN 794
Cdd:pfam07888 201 LAQRDTQVLQLQDTITTLTQKLTTAHRKEAENE--ALLEELRSLQERLNASERKVEG-------------LGEELSSMAA 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 795 HLNHVVDGLvrpeevaarvdelrRKLKLGTGEMNIHspsdvlgksLADLQKQFSEilARSKWerdeAQVRErKLQEEMAL 874
Cdd:pfam07888 266 QRDRTQAEL--------------HQARLQAAQLTLQ---------LADASLALRE--GRARW----AQERE-TLQQSAEA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 875 QQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIhylqenlksmeeiqgltdlQLQEADEEKERILAQLREL 954
Cdd:pfam07888 316 DKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRV-------------------QLSESRRELQELKASLRVA 376
|
410
....*....|...
gi 1622996213 955 EKKKKLEDAKSQE 967
Cdd:pfam07888 377 QKEKEQLQAEKQE 389
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1350-1670 |
7.20e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1350 RQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfidgnveslMTELEIEKSLKHHEDIVDEIECIEKTLL 1429
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN---------RSKEDIPNLQNITVRLQDLTEKLSEAED 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1430 KRRSELREADRLLAEAESELSCTKEKTKNAVEKftdaKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAK-DL 1508
Cdd:TIGR00618 609 MLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL----ALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAlQK 684
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1509 EQHKIKQEEILKEInkiVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ 1588
Cdd:TIGR00618 685 MQSEKEQLTYWKEM---LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTE 761
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1589 VTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKT 1668
Cdd:TIGR00618 762 AHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKS 841
|
..
gi 1622996213 1669 QL 1670
Cdd:TIGR00618 842 AT 843
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
438-771 |
7.25e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLEL 517
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 518 QMEKQKQEIAGKQKEikdlqiaidsldskdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE 597
Cdd:pfam02463 777 AEEREKTEKLKVEEE----------------KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 598 QLTEGQIAANEALKKDLEGVISGLQEYLgtiKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL 677
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEEITKEEL---LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKEN 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 678 AELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGK 757
Cdd:pfam02463 918 EIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEK 997
|
330
....*....|....
gi 1622996213 758 AQFSEEKEQENSEL 771
Cdd:pfam02463 998 ERLEEEKKKLIRAI 1011
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1339-1667 |
7.32e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1339 KREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHH--ED 1416
Cdd:pfam15921 88 KDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1417 IVDEIECIEKTLLKRRSELREADRLLAEAEsELSCTKEKTKNAVEkfTDAKRSLLQTESDA-EELERRAQETAVNLVKAD 1495
Cdd:pfam15921 168 SNTQIEQLRKMMLSHEGVLQEIRSILVDFE-EASGKKIYEHDSMS--TMHFRSLGSAISKIlRELDTEISYLKGRIFPVE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1496 QQLRSLQADAKD-----LEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERnedhhlQVLKE 1570
Cdd:pfam15921 245 DQLEALKSESQNkiellLQQHQDRIEQLISE-------HEVEITGLTEKASSARSQANSIQSQLEIIQE------QARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1571 SEVLLQakraELEKLKSQVTSQQQEMAVLDRQLGHKKEElhlLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLE 1650
Cdd:pfam15921 312 NSMYMR----QLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330
....*....|....*..
gi 1622996213 1651 ELSFQKGELNVQISERK 1667
Cdd:pfam15921 385 DLHKREKELSLEKEQNK 401
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1478-1630 |
7.44e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1478 EELERRAQETAVNLVKADQQLRSLQADAKDLEQHKikqeeilkeiNKIVAAKDSDFQCLskKKEKLTEELQKLQKDIEMA 1557
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERR----------EALQRLAEYSWDEI--DVASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 1558 ERNEDhhlqVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRL 1630
Cdd:COG4913 681 DASSD----DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1496-1666 |
8.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1496 QQLRSLQAdaKDLEQHKIKQEeiLKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLL 1575
Cdd:COG1579 7 RALLDLQE--LDSELDRLEHR--LKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1576 QAKRA--ELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELS 1653
Cdd:COG1579 83 GNVRNnkEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
170
....*....|...
gi 1622996213 1654 FQKGELNVQISER 1666
Cdd:COG1579 163 AEREELAAKIPPE 175
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
445-816 |
9.41e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 445 KISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQ 524
Cdd:COG5185 202 GTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLN 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 525 EIAGKQkeIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQqlDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQI 604
Cdd:COG5185 282 ENANNL--IKQFENTKEKIAEYTKSIDIKKATESLEEQ--LAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 605 AANEALK-KDLEGVISGLQEYLGTIKGQA--------TQAQNECRKLRDEKETLLQRLTEVEQERDQL--EIVAMDAEN- 672
Cdd:COG5185 358 AIKEEIEnIVGEVELSKSSEELDSFKDTIestkesldEIPQNQRGYAQEILATLEDTLKAADRQIEELqrQIEQATSSNe 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 673 -MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDA--EANQLKEELEKVTRLTQLEQSALQAELEKERQ 749
Cdd:COG5185 438 eVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLneELTQIESRVSTLKATLEKLRAKLERQLEGVRS 517
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622996213 750 ALK------NALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDEL 816
Cdd:COG5185 518 KLDqvaeslKDFMRARGYAHILALENLIPASELIQASNAKTDGQAANLRTAVIDELTQYLSTIESQQAREDPI 590
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1326-1530 |
9.42e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1326 SRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL 1405
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1406 -------------EIEKSLKHHEDIVDEI------ECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDA 1466
Cdd:COG4942 107 aellralyrlgrqPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 1467 KRSLLQTESDAEELERRAQEtavNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKD 1530
Cdd:COG4942 187 RAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
637-774 |
9.48e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 637 NECRKLRDEKETLLQRLTEVEQE----RDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQG------DLSAYEA 706
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDElaalEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvrnnkEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622996213 707 ELE-ARLNLRDAEANQL-----KEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK 774
Cdd:COG1579 97 EIEsLKRRISDLEDEILelmerIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1347-1584 |
9.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1347 ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKhheDIVDEIECIE 1425
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELaALEAELA---ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 1426 KTLLKRRSELREadrLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADA 1505
Cdd:COG4942 97 AELEAQKEELAE---LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622996213 1506 KDLEQHKIKQEEILKEInkivaakdsdfqclskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEK 1584
Cdd:COG4942 174 AELEALLAELEEERAAL------------------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
590-773 |
9.84e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.40 E-value: 9.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 590 EEIKDLEEQLT-----EGQIAANEALKKDLEGVISGLQEylGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE 664
Cdd:pfam05701 233 EELQRLNQQLLsakdlKSKLETASALLLDLKAELAAYME--SKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 665 IVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNL--RDAEANQLKEE--LEKVTRL-TQLEQSA 739
Cdd:pfam05701 311 KAKDEVNCLRVAAASLRSELEKEKAELASLRQREGMASIAVSSLEAELNRtkSEIALVQAKEKeaREKMVELpKQLQQAA 390
|
170 180 190
....*....|....*....|....*....|....*
gi 1622996213 740 LQAELEKER-QALKNALGKAQfsEEKEQENSELHA 773
Cdd:pfam05701 391 QEAEEAKSLaQAAREELRKAK--EEAEQAKAAAST 423
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
638-970 |
9.93e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 9.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 638 ECRKLRDEKETLLQrltEVEQERdQLEivamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDA 717
Cdd:pfam17380 297 EQERLRQEKEEKAR---EVERRR-KLE----EAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 718 EANQLKEELEKVTRLT------------QLEQSALQAELEKERQALKNALGKAQFSEEKEQENSElHAKLKHLQDDNNLL 785
Cdd:pfam17380 369 EIAMEISRMRELERLQmerqqknervrqELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-QREVRRLEEERARE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 786 KQQLKDFQNHLNHVVDGLVRPEEvaarvDELRRKLKlgtgemnihspsdvlgksladlqkqfseiLARSKWERDEAQVRE 865
Cdd:pfam17380 448 MERVRLEEQERQQQVERLRQQEE-----ERKRKKLE-----------------------------LEKEKRDRKRAEEQR 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622996213 866 RKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEiqgltdlQLQEADEEKE 945
Cdd:pfam17380 494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE-------QMRKATEERS 566
|
330 340
....*....|....*....|....*
gi 1622996213 946 RILAQLRELEKKKKLEDAKSQEQVF 970
Cdd:pfam17380 567 RLEAMEREREMMRQIVESEKARAEY 591
|
|
| |
