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Conserved domains on  [gi|1595488069|ref|NP_001356060|]
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eukaryotic translation initiation factor 4 gamma 3 isoform 7 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14954 super family cl33039
DNA polymerase III subunits gamma and tau; Provisional
 153-235 3.29e-03

DNA polymerase III subunits gamma and tau; Provisional


The actual alignment was detected with superfamily member PRK14954:

Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 38.39  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1595488069 153 SQPVYQSAPIIVPTQ--QQPPPAKREKKTIRirdpnqggkDITEEIMSGGGSRNPTPPIGRPASTPTPPQISPTPAISKS 230
Cdd:PRK14954  387 SPDVKKKAPEPDLPQpdRHPGPAKPEAPGAR---------PAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                  ....*
gi 1595488069 231 SNIID 235
Cdd:PRK14954  458 KPGVD 462
 
Name Accession Description Interval E-value
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 153-235 3.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 38.39  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1595488069 153 SQPVYQSAPIIVPTQ--QQPPPAKREKKTIRirdpnqggkDITEEIMSGGGSRNPTPPIGRPASTPTPPQISPTPAISKS 230
Cdd:PRK14954  387 SPDVKKKAPEPDLPQpdRHPGPAKPEAPGAR---------PAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                  ....*
gi 1595488069 231 SNIID 235
Cdd:PRK14954  458 KPGVD 462
 
Name Accession Description Interval E-value
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 153-235 3.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 38.39  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1595488069 153 SQPVYQSAPIIVPTQ--QQPPPAKREKKTIRirdpnqggkDITEEIMSGGGSRNPTPPIGRPASTPTPPQISPTPAISKS 230
Cdd:PRK14954  387 SPDVKKKAPEPDLPQpdRHPGPAKPEAPGAR---------PAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                  ....*
gi 1595488069 231 SNIID 235
Cdd:PRK14954  458 KPGVD 462
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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