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Conserved domains on  [gi|1488045806|ref|NP_001353440|]
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repulsive guidance molecule B isoform 3 [Homo sapiens]

Protein Classification

repulsive guidance molecule family protein( domain architecture ID 10534812)

repulsive guidance molecule (RGM) family protein may have several functions in the developing and adult nervous system, including regulation of cephalic neural tube closure, inhibition of neurite outgrowth and cortical neuron branching, and the formation of mature synapses

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RGM_C pfam06534
Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and ...
 266-440 1.10e-105

Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


:

Pssm-ID: 461939  Cd Length: 171  Bit Score: 311.48  E-value: 1.10e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 266 CTDQKVYQAVTDDLPAAFVDGTTSGGDSD-AKSLRIVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYE 344
Cdd:pfam06534   1 CTDQKVYQAETDDLPAAFVDGTTNGGDRDgGNSLRILEKEPGRHVEIHARYIGTTIIVRQVGRYLTFAIRMPEEVANALE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 345 ESQDLQLCVNGCPLSERIDDGqgqvsAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANF 424
Cdd:pfam06534  81 EDQDLQLCVNGCPRSERIDYR-----TLLAEPVKRTACYQPRVAFTLESATAKCRESLPVEDVYFQSCVFDLLTTGDANF 155

                         170
                  ....*....|....*.
gi 1488045806 425 TAAAHSALEDVEALHP 440
Cdd:pfam06534 156 TLAAYSALEDVKRLHP 171
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 94-261 7.07e-90

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


:

Pssm-ID: 461940  Cd Length: 165  Bit Score: 271.15  E-value: 7.07e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806  94 CRIQKCTTDFVSLTSHLNSaVDGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPE 173
Cdd:pfam06535   1 CKILKCNSEYVAATSALGG-GPEPNEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPRPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 174 -----VTHDPCNYHShagarehRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 248
Cdd:pfam06535  80 sppasPSPDICTYEG-------RFSKGKPPEYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGS 152

                         170
                  ....*....|...
gi 1488045806 249 SATATNKITIIFK 261
Cdd:pfam06535 153 LATATTKLTVIFK 165
 
Name Accession Description Interval E-value
RGM_C pfam06534
Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and ...
 266-440 1.10e-105

Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461939  Cd Length: 171  Bit Score: 311.48  E-value: 1.10e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 266 CTDQKVYQAVTDDLPAAFVDGTTSGGDSD-AKSLRIVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYE 344
Cdd:pfam06534   1 CTDQKVYQAETDDLPAAFVDGTTNGGDRDgGNSLRILEKEPGRHVEIHARYIGTTIIVRQVGRYLTFAIRMPEEVANALE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 345 ESQDLQLCVNGCPLSERIDDGqgqvsAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANF 424
Cdd:pfam06534  81 EDQDLQLCVNGCPRSERIDYR-----TLLAEPVKRTACYQPRVAFTLESATAKCRESLPVEDVYFQSCVFDLLTTGDANF 155

                         170
                  ....*....|....*.
gi 1488045806 425 TAAAHSALEDVEALHP 440
Cdd:pfam06534 156 TLAAYSALEDVKRLHP 171
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 94-261 7.07e-90

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461940  Cd Length: 165  Bit Score: 271.15  E-value: 7.07e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806  94 CRIQKCTTDFVSLTSHLNSaVDGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPE 173
Cdd:pfam06535   1 CKILKCNSEYVAATSALGG-GPEPNEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPRPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 174 -----VTHDPCNYHShagarehRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 248
Cdd:pfam06535  80 sppasPSPDICTYEG-------RFSKGKPPEYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGS 152

                         170
                  ....*....|...
gi 1488045806 249 SATATNKITIIFK 261
Cdd:pfam06535 153 LATATTKLTVIFK 165
 
Name Accession Description Interval E-value
RGM_C pfam06534
Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and ...
 266-440 1.10e-105

Repulsive guidance molecule (RGM) C-terminus; This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461939  Cd Length: 171  Bit Score: 311.48  E-value: 1.10e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 266 CTDQKVYQAVTDDLPAAFVDGTTSGGDSD-AKSLRIVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYE 344
Cdd:pfam06534   1 CTDQKVYQAETDDLPAAFVDGTTNGGDRDgGNSLRILEKEPGRHVEIHARYIGTTIIVRQVGRYLTFAIRMPEEVANALE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 345 ESQDLQLCVNGCPLSERIDDGqgqvsAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANF 424
Cdd:pfam06534  81 EDQDLQLCVNGCPRSERIDYR-----TLLAEPVKRTACYQPRVAFTLESATAKCRESLPVEDVYFQSCVFDLLTTGDANF 155

                         170
                  ....*....|....*.
gi 1488045806 425 TAAAHSALEDVEALHP 440
Cdd:pfam06534 156 TLAAYSALEDVKRLHP 171
RGM_N pfam06535
Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of ...
 94-261 7.07e-90

Repulsive guidance molecule (RGM) N-terminus; This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Swiss:Q8JG54 from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.


Pssm-ID: 461940  Cd Length: 165  Bit Score: 271.15  E-value: 7.07e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806  94 CRIQKCTTDFVSLTSHLNSaVDGFDSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPE 173
Cdd:pfam06535   1 CKILKCNSEYVAATSALGG-GPEPNEAYCSALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMKQHNCSKVGPTSPPRPR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488045806 174 -----VTHDPCNYHShagarehRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 248
Cdd:pfam06535  80 sppasPSPDICTYEG-------RFSKGKPPEYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNPYLSVQVTNSPVVPGS 152

                         170
                  ....*....|...
gi 1488045806 249 SATATNKITIIFK 261
Cdd:pfam06535 153 LATATTKLTVIFK 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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