NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1391723824|ref|NP_001350584|]
View 

programmed cell death protein 2 isoform 7 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PDCD2_C super family cl04443
Programmed cell death protein 2, C-terminal putative domain;
238-292 1.85e-20

Programmed cell death protein 2, C-terminal putative domain;


The actual alignment was detected with superfamily member pfam04194:

Pssm-ID: 461221  Cd Length: 111  Bit Score: 84.19  E-value: 1.85e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1391723824 238 DKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIPQ-EKDIPDCP-CGAKRILEFQ 292
Cdd:pfam04194   1 DKTFQKFQKRIAANPEQVLRYSFGGKPLWYSSEGRPSlASDIPNCEnCGGPRVFEFQ 57
zf-MYND pfam01753
MYND finger;
135-172 7.12e-09

MYND finger;


:

Pssm-ID: 460312  Cd Length: 39  Bit Score: 50.50  E-value: 7.12e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1391723824 135 CRVCGC--LGPKTCSRCHKAYYCSKEHQTLDWrLGHKQAC 172
Cdd:pfam01753   1 CAVCGKeaLKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
 
Name Accession Description Interval E-value
PDCD2_C pfam04194
Programmed cell death protein 2, C-terminal putative domain;
238-292 1.85e-20

Programmed cell death protein 2, C-terminal putative domain;


Pssm-ID: 461221  Cd Length: 111  Bit Score: 84.19  E-value: 1.85e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1391723824 238 DKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIPQ-EKDIPDCP-CGAKRILEFQ 292
Cdd:pfam04194   1 DKTFQKFQKRIAANPEQVLRYSFGGKPLWYSSEGRPSlASDIPNCEnCGGPRVFEFQ 57
zf-MYND pfam01753
MYND finger;
135-172 7.12e-09

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 50.50  E-value: 7.12e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1391723824 135 CRVCGC--LGPKTCSRCHKAYYCSKEHQTLDWrLGHKQAC 172
Cdd:pfam01753   1 CAVCGKeaLKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
 
Name Accession Description Interval E-value
PDCD2_C pfam04194
Programmed cell death protein 2, C-terminal putative domain;
238-292 1.85e-20

Programmed cell death protein 2, C-terminal putative domain;


Pssm-ID: 461221  Cd Length: 111  Bit Score: 84.19  E-value: 1.85e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1391723824 238 DKIFQKFKTQIALEPEQILRYGRGIAPIWISGENIPQ-EKDIPDCP-CGAKRILEFQ 292
Cdd:pfam04194   1 DKTFQKFQKRIAANPEQVLRYSFGGKPLWYSSEGRPSlASDIPNCEnCGGPRVFEFQ 57
zf-MYND pfam01753
MYND finger;
135-172 7.12e-09

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 50.50  E-value: 7.12e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1391723824 135 CRVCGC--LGPKTCSRCHKAYYCSKEHQTLDWrLGHKQAC 172
Cdd:pfam01753   1 CAVCGKeaLKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH