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Conserved domains on  [gi|1320620228|ref|NP_001346385|]
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zinc finger-containing ubiquitin peptidase 1 isoform 3 [Mus musculus]

Protein Classification

C78 family peptidase( domain architecture ID 10546049)

C78 family peptidase is a cysteine peptidase similar to human Ufm1-specific protease 2 (UFSP2) which cleaves the peptide bond at the C-terminal Gly of ubiquitin-fold modifier-1 protein and to human zinc finger-containing ubiquitin peptidase 1 (ZUP1, also known as ZUFSP) which cleaves 'Lys-63'-linked long polyubiquitin chains

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Peptidase_C78 pfam07910
Peptidase family C78; This family formerly known as DUF1671 has been shown to be a cysteine ...
 335-537 1.56e-73

Peptidase family C78; This family formerly known as DUF1671 has been shown to be a cysteine peptidase called (Ufm1)-specific protease.


:

Pssm-ID: 400318  Cd Length: 199  Bit Score: 232.17  E-value: 1.56e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320620228 335 DVRCVWLSTVVDHF-HSSFGDKGWGCGYRNFQMLLSSLLQSDVYgdCLKGMAVPCIPKIQSMIEDAWNEGFDPQGasqln 413
Cdd:pfam07910   2 EVYLVLGSYDYYHYmQDGFNDKGWGCGYRNLQMLLSWLLLNGYT--GKPQFTVPTIPEIQQMLEDAWDKGFDSQG----- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320620228 414 nkLQGTKAWIGACEIYTLLTSL-RVKCRIIDFhKSTGPLGTHPRLFEWILNYYSsetegtpkivCTSKPPIYLQHQGH-- 490
Cdd:pfam07910  75 --FVGSRKWIGTTEASAVLTSLlGVDCKIVDF-KSGSELGTHPELFDEVANYFE----------STSGPPIYLQHQGHvy 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1320620228 491 SRTVVGIEEKKNRTLCLLVFDPGCPSRE--MQKLLKQDMEARKQASQVF 537
Cdd:pfam07910 142 SRTILGVEINANGELNLLILDPHYTGADdsLKLVGDKGWVGWKKGVDFL 190
 
Name Accession Description Interval E-value
Peptidase_C78 pfam07910
Peptidase family C78; This family formerly known as DUF1671 has been shown to be a cysteine ...
 335-537 1.56e-73

Peptidase family C78; This family formerly known as DUF1671 has been shown to be a cysteine peptidase called (Ufm1)-specific protease.


Pssm-ID: 400318  Cd Length: 199  Bit Score: 232.17  E-value: 1.56e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320620228 335 DVRCVWLSTVVDHF-HSSFGDKGWGCGYRNFQMLLSSLLQSDVYgdCLKGMAVPCIPKIQSMIEDAWNEGFDPQGasqln 413
Cdd:pfam07910   2 EVYLVLGSYDYYHYmQDGFNDKGWGCGYRNLQMLLSWLLLNGYT--GKPQFTVPTIPEIQQMLEDAWDKGFDSQG----- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320620228 414 nkLQGTKAWIGACEIYTLLTSL-RVKCRIIDFhKSTGPLGTHPRLFEWILNYYSsetegtpkivCTSKPPIYLQHQGH-- 490
Cdd:pfam07910  75 --FVGSRKWIGTTEASAVLTSLlGVDCKIVDF-KSGSELGTHPELFDEVANYFE----------STSGPPIYLQHQGHvy 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1320620228 491 SRTVVGIEEKKNRTLCLLVFDPGCPSRE--MQKLLKQDMEARKQASQVF 537
Cdd:pfam07910 142 SRTILGVEINANGELNLLILDPHYTGADdsLKLVGDKGWVGWKKGVDFL 190
 
Name Accession Description Interval E-value
Peptidase_C78 pfam07910
Peptidase family C78; This family formerly known as DUF1671 has been shown to be a cysteine ...
 335-537 1.56e-73

Peptidase family C78; This family formerly known as DUF1671 has been shown to be a cysteine peptidase called (Ufm1)-specific protease.


Pssm-ID: 400318  Cd Length: 199  Bit Score: 232.17  E-value: 1.56e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320620228 335 DVRCVWLSTVVDHF-HSSFGDKGWGCGYRNFQMLLSSLLQSDVYgdCLKGMAVPCIPKIQSMIEDAWNEGFDPQGasqln 413
Cdd:pfam07910   2 EVYLVLGSYDYYHYmQDGFNDKGWGCGYRNLQMLLSWLLLNGYT--GKPQFTVPTIPEIQQMLEDAWDKGFDSQG----- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1320620228 414 nkLQGTKAWIGACEIYTLLTSL-RVKCRIIDFhKSTGPLGTHPRLFEWILNYYSsetegtpkivCTSKPPIYLQHQGH-- 490
Cdd:pfam07910  75 --FVGSRKWIGTTEASAVLTSLlGVDCKIVDF-KSGSELGTHPELFDEVANYFE----------STSGPPIYLQHQGHvy 141

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1320620228 491 SRTVVGIEEKKNRTLCLLVFDPGCPSRE--MQKLLKQDMEARKQASQVF 537
Cdd:pfam07910 142 SRTILGVEINANGELNLLILDPHYTGADdsLKLVGDKGWVGWKKGVDFL 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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