|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
8.78e-35 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 8.78e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
4.32e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 4.32e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
2.68e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 2.68e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1317840703 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
1.82e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 1.82e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1317840703 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-1078 |
1.22e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.96 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 351 ALQEALKEKQ-----QHIEQLLAERDLERAEVAKATSHVGEIEQELALArdghDQHVLELEAKMDQLRTMVEAADREKVE 425
Cdd:TIGR02168 217 ELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQEL----EEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 426 LLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQEI 505
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE--AELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 506 SALQEKLEAIHTDHQGEMTSLKEHFG---AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLET 582
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIAslnNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK----------ELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 583 AIASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEME 646
Cdd:TIGR02168 441 ELEELEEELEELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 647 TMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDT--------------------LNKLQEAEIKVKELEVLQA--- 703
Cdd:TIGR02168 520 GILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAakkaiaflkqnelgrvtflpLDSIKGTEIQGNDREILKNieg 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 704 ---------KYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEG-------------------------------KLEL 743
Cdd:TIGR02168 600 flgvakdlvKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGyrivtldgdlvrpggvitggsaktnssilerRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 744 ETLRQQLEGAEKQIKNLETERNAessKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 823
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 824 KEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQksigeVTLKAEQS 903
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR-----ERLESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 904 QQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYE---KASSETKTKHEEILQNLQKMLADTEDKLKAAQEANR 980
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELEselEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 981 DLMQDMEELKTQADKAKAAQT-------------AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKT 1047
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEglevridnlqerlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAA 991
|
810 820 830
....*....|....*....|....*....|.
gi 1317840703 1048 VEELNKSKELLSVENQKMEEFKKEIETLKQA 1078
Cdd:TIGR02168 992 IEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-1127 |
2.01e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 2.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 401 HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVA 480
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 481 ELRRRLESSKppGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRS 560
Cdd:TIGR02168 313 NLERQLEELE--AQLEELESKLDELAEELAELEEKLEELKEELESLEA----ELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 561 KLDHANKE----NSDVIALwKSKLETAIASHQQAMEELKVSFSKgigTDSAEFAELKTQIERLRldyqHEIESLQsKQDS 636
Cdd:TIGR02168 387 KVAQLELQiaslNNEIERL-EARLERLEDRRERLQQEIEELLKK---LEEAELKELQAELEELE----EELEELQ-EELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 637 ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSaedqhLVEMEDTLNKLQEAEIKV-KELEVLQAKYTEQSEVIgNF 715
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDS-----LERLQENLEGFSEGVKALlKNQSGLSGILGVLSELI-SV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 716 TSQLSAVKEKLL----------DLDALRKA------NSEGK---LELETLR-QQLEGAEKQIKNLETERNAESSKKEKFA 775
Cdd:TIGR02168 532 DEGYEAAIEAALggrlqavvveNLNAAKKAiaflkqNELGRvtfLPLDSIKgTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 776 STSEEAVS---AQTRMQDTV----NKLHQKEEQFNVLS---------------------------SELEKLRENLTDMEA 821
Cdd:TIGR02168 612 PKLRKALSyllGGVLVVDDLdnalELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilerrREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 822 KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAE 901
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 902 QSQQQAARkheeekkeLEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRD 981
Cdd:TIGR02168 772 EAEEELAE--------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE-AANLRERLESLERRIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 982 LMQDMEELKTQADKAKAAQtaEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE 1061
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEI--EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1317840703 1062 NQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvtSHQKLEEERSVLNNQLLEM 1127
Cdd:TIGR02168 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED--DEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-1066 |
9.19e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.33 E-value: 9.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 333 GLLTETSSRYARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKAtshvGEIEQELALARDGHDQHVLELEAKMD 410
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAEDARKAEEARK----AEDAKRVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 411 QLRTMVEAADREKVELLNQLE--EEKRKVEDLQFRVEEESITKG-DLEVATVSEKSRIMELEKDLALRAQEVAELRRRLE 487
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRkaEDARKAEAARKAEEERKAEEArKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 488 SSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAL---HTATEKLSKENESLRSKLDH 564
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKaeeAKKADEAKKKAEEAKKKADA 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 565 ANKENSDVialwKSKLETAIASHQQAMEELKVSFSKgigtdsAEFAELKTQIERLRLDYQHEiESLQSKQDSERSAHAKE 644
Cdd:PTZ00121 1334 AKKKAEEA----KKAAEAAKAEAEAAADEAEAAEEK------AEAAEKKKEEAKKKADAAKK-KAEEKKKADEAKKKAEE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 645 METMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKE---LEVLQAKYTEQSEvignfTSQLSA 721
Cdd:PTZ00121 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKK-----ADEAKK 1477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 722 VKEKLLDLDALRKANSEGKLELETLRQqlegAEKQIKNLETERNAESSKKEKFASTSEEAvsaqtRMQDTVNKLHQKEEQ 801
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKK----AAEAKKKADEAKKAEEAKKADEAKKAEEA-----KKADEAKKAEEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 802 FNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE------------ 869
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEeakikaeelkka 1628
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 870 ----RSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKmetsynQCQDLKAKYEK 945
Cdd:PTZ00121 1629 eeekKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA------EALKKEAEEAK 1702
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 946 ASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQD---MEELKT-QADKAKAAQTAEDAMQIMEQMTKEKTETLA 1021
Cdd:PTZ00121 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDkkkAEEAKKdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1317840703 1022 SLEDTKQTNARLQNELDTLK-ENNLKTVEELNKSKELLSVENQKME 1066
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDiFDNFANIIEGGKEGNLVINDSKEME 1828
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
1.08e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.49 E-value: 1.08e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1317840703 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
350-849 |
2.86e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 74.33 E-value: 2.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEqELALARDGHDQHVLELEAKMDQLRTMVEaadrEKVELLNQ 429
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIE----ELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 430 LEEEKRKVEDLQfRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISALQ 509
Cdd:PRK03918 278 LEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-----ELKKKLKELE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 510 EKLEAIHTDHQ---------GEMTSLKEHFGARE-EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD----VIAL 575
Cdd:PRK03918 352 KRLEELEERHElyeeakakkEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKElkkaIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 576 WKSKLETAIASH---QQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAH--AKEMETMQA 650
Cdd:PRK03918 432 KKAKGKCPVCGReltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR-ELEKVLKKESELIKLKelAEQLKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 651 KLMKI----IKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKVKELEV-LQAKYTEQSEVIGNFTSQ-LSAVKE 724
Cdd:PRK03918 511 KLKKYnleeLEKKAEEYEKLKEKLIKLKGE-IKSLKKELEKLEELKKKLAELEKkLDELEEELAELLKELEELgFESVEE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 725 KLLDLDALRKANSEgKLELETLRQQLEGAEKQIKNLETERnaeSSKKEKFASTSEEAVSAQTRMQDTVNKLhqKEEQFNV 804
Cdd:PRK03918 590 LEERLKELEPFYNE-YLELKDAEKELEREEKELKKLEEEL---DKAFEELAETEKRLEELRKELEELEKKY--SEEEYEE 663
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1317840703 805 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 849
Cdd:PRK03918 664 LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-1066 |
3.41e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.79 E-value: 3.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 344 RKISGTTALQEALK-EKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARD--GHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:PTZ00121 1194 RKAEDARKAEAARKaEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEerNNEEIRKFEEARMAHFARRQAAIK 1273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 421 REKVELLNQLE--EEKRKVEDLQfrvEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMS 498
Cdd:PTZ00121 1274 AEEARKADELKkaEEKKKADEAK---KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 499 LS--LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEafQKEIKALHTATEKLSKENESLRSKldHANKENSDVIALW 576
Cdd:PTZ00121 1351 EAeaAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE--KKKADEAKKKAEEDKKKADELKKA--AAAKKKADEAKKK 1426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 577 KSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKII 656
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 657 KEKEDSLEAVKAR-LDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLdldALRKA 735
Cdd:PTZ00121 1507 EAKKKADEAKKAEeAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM---ALRKA 1583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 736 NSEGKLELETLRQQLEGAEKqiknlETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREN 815
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEE-----EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 816 LTDMEAKFKEKDDREDQLVKAKEKLENDiaeimkmSGDNSSQLTKMNDElrlkERSVEELQLKLTKANENASFLQKSIGE 895
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEED-------EKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEE 1727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 896 VTLKAEQSQQQA---ARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKL 972
Cdd:PTZ00121 1728 NKIKAEEAKKEAeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 973 KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNArlqnELDTLKENNLKT--VEE 1050
Cdd:PTZ00121 1808 ANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNK----EADFNKEKDLKEddEEE 1883
|
730
....*....|....*.
gi 1317840703 1051 LNKSKELLSVENQKME 1066
Cdd:PTZ00121 1884 IEEADEIEKIDKDDIE 1899
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
388-1133 |
4.98e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 4.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 388 EQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVEllnqleeEKRKVEDLQfRVEEESITKGD--LEVATVSEKSRI 465
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-------EARKAEDAR-KAEEARKAEDAkrVEIARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 466 MELEKDlALRAQEVAELRRRLESSKPpgdvdmslsllQEISALQEKLEAIHTDHQGEMTSLKEhfgAREEAFQKEIKALH 545
Cdd:PTZ00121 1166 AEEARK-AEDAKKAEAARKAEEVRKA-----------EELRKAEDARKAEAARKAEEERKAEE---ARKAEDAKKAEAVK 1230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 546 TATEKLSKENESLRSKLDHANKE----NSDVIALWKSKLETAIASHQQAMEELKVSFSKGiGTDSAEFAELKTQIERLRL 621
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEirkfEEARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAEEKKKADEAKK 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 622 DYQheieslQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEAEIKVKELEVL 701
Cdd:PTZ00121 1310 KAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD----EAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 702 QAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKL--ELETLRQQLEGAEKQIKNLETERNAESSKK---EKFAS 776
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEAKKKAEEAKKADEAKKkaeEAKKA 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 777 TSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdREDQLVKAKEKLENDIAEimkmsgdnSS 856
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEAK--------KA 1530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 857 QLTKMNDELRLKE--RSVEELQlkltKANENASFLQKSIGEVTLKAEQSQQQAARKheeeKKELEEKLLELEKKMETSYN 934
Cdd:PTZ00121 1531 EEAKKADEAKKAEekKKADELK----KAEELKKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKAEEARIEEVMKLYE 1602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 935 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTK 1014
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1015 EKTETLASLEDTKQtnarlqneldtlKENNLKTVEELNKSKEllsVENQKMEEFKKEIETLKQaaaqKSQQLSALQEENV 1094
Cdd:PTZ00121 1683 AEEDEKKAAEALKK------------EAEEAKKAEELKKKEA---EEKKKAEELKKAEEENKI----KAEEAKKEAEEDK 1743
|
730 740 750
....*....|....*....|....*....|....*....
gi 1317840703 1095 KLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRLKK 1133
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
469-1140 |
1.04e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 469 EKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTAT 548
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQ--EELKEAEEELEELTAELQELEEKLEELRLEVSELEE----EIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 549 EKLSKENESLRSKLDHANKEN---SDVIALWKSKLETAI---ASHQQAMEELKVSFsKGIGTDSAEFAELKTQIERLRLD 622
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLeelEAQLEELESKLDELAeelAELEEKLEELKEEL-ESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 623 YQHEIESLQSKQDS---ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKL-QEAEIKVKEL 698
Cdd:TIGR02168 377 LEEQLETLRSKVAQlelQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELeEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 699 EVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKAnsegkleLETLRQQLEGAEKQIKNLETERNAES------SKKE 772
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDS-------LERLQENLEGFSEGVKALLKNQSGLSgilgvlSELI 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 773 KFASTSEEAVSA--QTRMQD-TVNKLHQKEEQFNVLSSELE--------------KLRENLTDMEAKFKEKDDREDQLVK 835
Cdd:TIGR02168 530 SVDEGYEAAIEAalGGRLQAvVVENLNAAKKAIAFLKQNELgrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 836 AKEKLENDIAEIMkmSG----DNSSQLTKMNDELRLKERSVEELQLKLT----------KANENASFLQKSIGEVTLKAE 901
Cdd:TIGR02168 610 FDPKLRKALSYLL--GGvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaKTNSSILERRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 902 QSQQQAARKHEEEKKELEEKLLelekkMETSYNQCQDLKAKYEKASSETKT---KHEEILQNLQKMLADTEDKLKAAQEA 978
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEE-----LEEELEQLRKELEELSRQISALRKdlaRLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 979 NRDLMQDMEELKTQ-----ADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNK 1053
Cdd:TIGR02168 763 IEELEERLEEAEEElaeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1054 SKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE----VTSHQKLEEERSVLNNQLLEMKK 1129
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEleelSEELRELESKRSELRRELEELRE 922
|
730
....*....|.
gi 1317840703 1130 RLKKVYPRYNK 1140
Cdd:TIGR02168 923 KLAQLELRLEG 933
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
3.90e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.48 E-value: 3.90e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317840703 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
718-1101 |
7.28e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 7.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 718 QLSAVKEKLLDLDALRkanSEGKLELETLRQQLEGAEK--QIKNLETERNAESSKKeKFASTSEEAVSAQTRMQDTVNKL 795
Cdd:COG1196 180 KLEATEENLERLEDIL---GELERQLEPLERQAEKAERyrELKEELKELEAELLLL-KLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 796 HQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 875
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 876 QLKLTKANENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleekllelekkmetsynqcqdLKAKYEKASSETKTKHE 955
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLE-----------------------------AEAELAEAEEELEELAE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 956 EILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAmqimeqmtkEKTETLASLEDTKQTNARLQN 1035
Cdd:COG1196 387 ELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE---------EEEEEEEALEEAAEEEAELEE 456
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1317840703 1036 ELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG 1101
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-1132 |
7.67e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 7.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 467 ELEKDL------ALRAQEVAELRRRLEsskppgDVDMSLSLLqEISALQEKLEAIhtdhQGEMTSLKEhfgaREEAFQKE 540
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 541 IKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGigtdSAEFAELKTQIERLR 620
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 621 LDY---QHEIESLQSKQDSERSAHAKEMETMQAkLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEIKVKE 697
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQ----IASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 698 LEVLQAKYTEQSEvignftsqlsavkekLLDLDALRKANSEGKLELETLRQQLEGAEKQiknLETERNAESSKKEKFAST 777
Cdd:TIGR02168 412 LEDRRERLQQEIE---------------ELLKKLEEAELKELQAELEELEEELEELQEE---LERLEEALEELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 778 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLReNLTDMEAKFKEKDDREDQLVKAKEK----LENDIAEIMKMSGD 853
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLSELISVDEGyeaaIEAALGGRLQAVVV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 854 NSSQLTKMNDELRLKERSVEELQLKLTKANENAsfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLE-LEKKMETS 932
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTE--IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 933 YNQCQDLKAKYE--------------------KASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQ 992
Cdd:TIGR02168 631 LDNALELAKKLRpgyrivtldgdlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 993 ADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEI 1072
Cdd:TIGR02168 707 LEELE--EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1073 ETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRLK 1132
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLRERLESLERRIAATERRLE 841
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-1061 |
1.32e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.38 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 425 ELLNQLEEekrkvedlQFRVEEESITKGDLEVATVSEKSRIM--ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLL 502
Cdd:pfam15921 342 DKIEELEK--------QLVLANSELTEARTERDQFSQESGNLddQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 503 ------------QEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKE---IKALHTATEKLSKENESLRSK---LDH 564
Cdd:pfam15921 414 idhlrrelddrnMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVsslTAQLESTKEMLRKVVEELTAKkmtLES 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 565 ANKENSDVIALWKSKLETAIASHQQAME-----ELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHE---IESLQSKQDS 636
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKdkvIEILRQQIEN 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 637 ERS---AHAKEMETMQAKLMKIIKEKEDSleavkaRLDSAEDQHLVEMEDTlnKLQEAEIKVKELEVlqakytEQSEVIG 713
Cdd:pfam15921 574 MTQlvgQHGRTAGAMQVEKAQLEKEINDR------RLELQEFKILKDKKDA--KIRELEARVSDLEL------EKVKLVN 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 714 NFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEKfastseEAVSAQTRMQDTVN 793
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM------QLKSAQSELEQTRN 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 794 KLHQ---------------------KEEQFNVLSSELEKLRENLTDMEakfKEKDDREDQLVKAKEKLENDIAEIMKMSG 852
Cdd:pfam15921 714 TLKSmegsdghamkvamgmqkqitaKRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 853 DNssqltkmnDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEkllelekkmeTS 932
Cdd:pfam15921 791 EL--------EVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQG----------PG 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 933 YNQCQDLKAKYEKASSETKTkHEEI--LQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKakaaqtaEDAMQIM 1009
Cdd:pfam15921 853 YTSNSSMKPRLLQPASFTRT-HSNVpsSQSTASFLSHHSRKTNALKEdPTRDLKQLLQELRSVINE-------EPTVQLS 924
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 1010 EQMTKEKTETLASLEDTKQ---TNARLQNELDTLKENNLKTveELNKSKELLSVE 1061
Cdd:pfam15921 925 KAEDKGRAPSLGALDDRVRdciIESSLRSDICHSSSNSLQT--EGSKSSETCSRE 977
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-908 |
1.55e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 431 EEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgDVDMSLSLLQEISALQE 510
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE--ELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 511 KLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQA 590
Cdd:COG1196 369 EAEAELAEAEEELEELAE----ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 591 MEELKvsfskgigtDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEmETMQAKLMKIIKEKEDSLEAVKARL 670
Cdd:COG1196 445 EEAAE---------EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 671 DSAEDQHL---VEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLR 747
Cdd:COG1196 515 LLAGLRGLagaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 748 QQLEGAEKQIKNLETERNAESSkkeKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 827
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYY---VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 828 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQA 907
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
.
gi 1317840703 908 A 908
Cdd:COG1196 752 A 752
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
644-1076 |
2.03e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 2.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 644 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQLSAVK 723
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ----LNQLKDEQNKI---KKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 724 EKLLDLDALRKAN--SEGKLELETLRQQLEGAEKQIKNLE---TERNAESSKKEKFASTSE-EAVSAQTRMQDTVNKLHQ 797
Cdd:TIGR04523 295 SEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEK 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 798 KEEQFNVLSSELEKLRENLTDMEAKF-------KEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER 870
Cdd:TIGR04523 375 LKKENQSYKQEIKNLESQINDLESKIqnqeklnQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 871 SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQdLKAKYEKASSET 950
Cdd:TIGR04523 455 IIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISS-LKEKIEKLESEK 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 951 KTKHEEILQNLQKMLADTEDKLKAAQEANRD-LMQDMEELKTQADKAKAAQTAEDamQIMEQMTKEKTETLASLEDTKQT 1029
Cdd:TIGR04523 534 KEKESKISDLEDELNKDDFELKKENLEKEIDeKNKEIEELKQTQKSLKKKQEEKQ--ELIDQKEKEKKDLIKEIEEKEKK 611
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1317840703 1030 NARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLK 1076
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
655-1135 |
4.26e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.37 E-value: 4.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 655 IIKEKEDSLEAVKARLDSAEDQHLVemeDTLNKLQ------EAEIKVKELEVLQAKYT--EQSEVIGNFTSQLSAVKEKL 726
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLH---ERLNGLEselaelDEEIERYEEQREQARETrdEADEVLEEHEERREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 727 LDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEkFASTSEEAVSAQ-----TRMQDTVNKLHQKEEQ 801
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG-LDDADAEAVEARreeleDRDEELRDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 802 FNVLSSELEKLRENLTDMEAKFKEK----DDREDQLVKAKEK----------LENDIAEIMKMSGDNSSQLTKMNDELRL 867
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELreeaAELESELEEAREAvedrreeieeLEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 868 KERSVEELQLKLTKANENASFLQKSI--GEVTLKA----EQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA 941
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVeeAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 942 KYEKASSETKT-----KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD-KAKAAQTAEDAMQIMEQMT-- 1013
Cdd:PRK02224 497 RLERAEDLVEAedrieRLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAREEVae 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1014 --------KEKTETLASLEDTKQTNARLQNELDTLKEnNLKTVEELN-KSKELLS------------VENQKMEEFKKEI 1072
Cdd:PRK02224 577 lnsklaelKERIESLERIRTLLAAIADAEDEIERLRE-KREALAELNdERRERLAekrerkreleaeFDEARIEEAREDK 655
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317840703 1073 ETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLemkkRLKKVY 1135
Cdd:PRK02224 656 ERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE----ALEALY 714
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
351-905 |
9.16e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.22 E-value: 9.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELalardghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR--------EELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 431 EEEKRKVEDLQFRVEE--ESITKGDLEVATVSEksRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISAL 508
Cdd:PRK02224 282 RDLRERLEELEEERDDllAEAGLDDADAEAVEA--RREELEDRDEELRDRLEECRVAAQAHNEEAE-----SLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 509 QEKLEAIHT---DHQGEMTSLKEHFGARE---EAFQKEIKALH-------TATEKLSKENESLRSKLDHANKENSDVIAL 575
Cdd:PRK02224 355 EERAEELREeaaELESELEEAREAVEDRReeiEELEEEIEELRerfgdapVDLGNAEDFLEELREERDELREREAELEAT 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 576 WKSkLETAIASHQQAMEELKV----------SFSKGIGTDSAEFAELKTQIERLRLdyqhEIESLQSKQDSERSAH--AK 643
Cdd:PRK02224 435 LRT-ARERVEEAEALLEAGKCpecgqpvegsPHVETIEEDRERVEELEAELEDLEE----EVEEVEERLERAEDLVeaED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 644 EMETMQAK---LMKIIKEKEDSLEAVKARLDS---AEDQHLVEMEDTLNKLQEAEIKVKelevlqakytEQSEVIGNFTS 717
Cdd:PRK02224 510 RIERLEERredLEELIAERRETIEEKRERAEElreRAAELEAEAEEKREAAAEAEEEAE----------EAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 718 QLSAVKEKLLDLDALRKANSegklELETLRQQLEGAEKQIKNLeTERNAESskKEKFASTSEeavsaqtRMQDTVNKLhq 797
Cdd:PRK02224 580 KLAELKERIESLERIRTLLA----AIADAEDEIERLREKREAL-AELNDER--RERLAEKRE-------RKRELEAEF-- 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 798 KEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnssqltkmnDELRLKERSVEELQL 877
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL---------------EELRERREALENRVE 708
|
570 580
....*....|....*....|....*...
gi 1317840703 878 KLTKANENASFLQKSIGEvtLKAEQSQQ 905
Cdd:PRK02224 709 ALEALYDEAEELESMYGD--LRAELRQR 734
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
655-1007 |
1.54e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 655 IIKEKEDSLEAVKaRLDSAEDqHLVEMEDTLNklqEAEIKVKELEvLQAKYTEQsevignFTSQLSAVKEKLLDLDALRK 734
Cdd:TIGR02168 167 ISKYKERRKETER-KLERTRE-NLDRLEDILN---ELERQLKSLE-RQAEKAER------YKELKAELRELELALLVLRL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 735 anSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKE----KFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELE 810
Cdd:TIGR02168 235 --EELREELEELQEELKEAEEELEELTAELQELEEKLEelrlEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 811 KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ 890
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 891 KSIgevTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEkassetktKHEEILQNLQKMLADTED 970
Cdd:TIGR02168 393 LQI---ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE--------ELEEELEELQEELERLEE 461
|
330 340 350
....*....|....*....|....*....|....*..
gi 1317840703 971 KLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ 1007
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1076 |
1.63e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 1.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQeLALARDGHDQH--VLELEAKMDQLRTMVEAADR 421
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEaeIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 422 EKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEK-------SRIMELEKDLALRAQEVAELRRRLESSKPPGD 494
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 495 vdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE---HFGAREEAFQKEIKA----LHTATEKLSKENES---LRSK 561
Cdd:TIGR02169 403 -----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAkinELEEEKEDKALEIKKqewkLEQLAADLSKYEQElydLKEE 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 562 LDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS--KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK------ 633
Cdd:TIGR02169 478 YDRVEKELSKL----QRELAEAEAQARASEERVRGGRAveEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 634 -QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEME------------DTL--NKLQEAE 692
Cdd:TIGR02169 554 vEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFavDLVEFDpkyepafkyvfgDTLvvEDIEAAR 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 693 ---IKVKeLEVLQAKYTEQSEVI--GNFTSQLSAVKEKLLDLDALRKANSEGKL--ELETLRQQLEGAEKQIKNLETERN 765
Cdd:TIGR02169 634 rlmGKYR-MVTLEGELFEKSGAMtgGSRAPRGGILFSRSEPAELQRLRERLEGLkrELSSLQSELRRIENRLDELSQELS 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 766 AESSKKEKFastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAkfkEKDDREDQLVKAKEKLENDIA 845
Cdd:TIGR02169 713 DASRKIGEI---EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA---RIEELEEDLHKLEEALNDLEA 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 846 EImkmsgdNSSQLTKMNDELRL--KERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAArkheeekkelEEKLL 923
Cdd:TIGR02169 787 RL------SHSRIPEIQAELSKleEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL----------KEQIK 850
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 924 ELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEE----LKTQADKAKAA 999
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAQLRELERKIEELEAQIEKkrkrLSELKAKLEAL 929
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1000 QTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEE----------LNKSKELLSVENQKMEEFK 1069
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEyeevlkrldeLKEKRAKLEEERKAILERI 1009
|
....*..
gi 1317840703 1070 KEIETLK 1076
Cdd:TIGR02169 1010 EEYEKKK 1016
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1131 |
1.77e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESITKGDLE------VATVSEKSRIMELEKDLAL----- 474
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESNELHEKQKfylrqsVIDLQTKLQEMQMERDAMAdirrr 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 475 RAQEVAELRRRLESSKPPGDVDMSLS--LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI----------- 541
Cdd:pfam15921 136 ESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdsmstmhf 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 542 KALHTATEKLSKENESLRSKLdhankenSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaeFAELKTQIERLRL 621
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYL-------KGRIFPVEDQLEALKSESQNKIELL--------------LQQHQDRIEQLIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 622 DYQHEIESLQSKQDSERS---AHAKEMETMQ-------AKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEA 691
Cdd:pfam15921 275 EHEVEITGLTEKASSARSqanSIQSQLEIIQeqarnqnSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 692 EIKVKELEVLQAKYTEQSeviGNFTSQLSAV------KEKLLDLDA-----LRKANSEGKLELETLRQQLEGAEKQIKNL 760
Cdd:pfam15921 355 NSELTEARTERDQFSQES---GNLDDQLQKLladlhkREKELSLEKeqnkrLWDRDTGNSITIDHLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 761 ETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKL-HQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEK 839
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLtAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 840 LENDIAEIMKMSGDNSSQLTKMN------DELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEE 913
Cdd:pfam15921 512 IEATNAEITKLRSRVDLKLQELQhlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 914 EKKELEEKLLELEKKMETSYnqcqdLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQa 993
Cdd:pfam15921 592 KAQLEKEINDRRLELQEFKI-----LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTS- 665
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 994 dKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKeNNLKTVEELNKSKELLSVENQK--------M 1065
Cdd:pfam15921 666 -RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTR-NTLKSMEGSDGHAMKVAMGMQKqitakrgqI 743
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1317840703 1066 EEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTrdeVTSHQKLEEERSVLNNQLLEMKKRL 1131
Cdd:pfam15921 744 DALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTV---ATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
531-1075 |
1.86e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.45 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 531 GAREEAFQKEIKALHTATEKLSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELKVsfskgIGTDSAEFA 610
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE-EQREQARETRDEADEVLEEHEERREELET-----LEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 611 ELKTQIERLRLDYQHEIESLQSKQDSER-------------SAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH 677
Cdd:PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEeerddllaeagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 678 LVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAlRKANSEGKLE-----LETLRQQLEG 752
Cdd:PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE-RFGDAPVDLGnaedfLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 753 AEKQIKNLETE-RNAESSKKEkfASTSEEAVSAQTRMQDT-----VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFkek 826
Cdd:PRK02224 424 LREREAELEATlRTARERVEE--AEALLEAGKCPECGQPVegsphVETIEEDRERVEELEAELEDLEEEVEEVEERL--- 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 827 dDREDQLVKAKEKLENdiaeimkmSGDNSSQLTKMNDElrlKERSVEELQLKLTKANENASFLQKSiGEVTLKAEQSQQQ 906
Cdd:PRK02224 499 -ERAEDLVEAEDRIER--------LEERREDLEELIAE---RRETIEEKRERAEELRERAAELEAE-AEEKREAAAEAEE 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 907 AARKHEEEKKELEEKLLELEKKMEtSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANRDLMQDM 986
Cdd:PRK02224 566 EAEEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREK-REALAELNDERRERLAEKRERKRELEAEF 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 987 EEL---KTQADKAKAAQTAEDAMQIMEQMTKEKTEtlasledtkqtnarLQNELDTLkENNLKTVEELNKSKELLSVENQ 1063
Cdd:PRK02224 644 DEArieEAREDKERAEEYLEQVEEKLDELREERDD--------------LQAEIGAV-ENELEELEELRERREALENRVE 708
|
570
....*....|..
gi 1317840703 1064 KMEEFKKEIETL 1075
Cdd:PRK02224 709 ALEALYDEAEEL 720
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-847 |
3.33e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGH---DQHVLELEAKMDQ 411
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskp 491
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE---- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 492 pgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD 571
Cdd:COG1196 404 --------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 572 VIALWKSKLETAIAS----HQQAMEELKVSFSKG--------------------IGTDSAEFAELKTQIERLRLDYQHEI 627
Cdd:COG1196 476 EAALAELLEELAEAAarllLLLEAEADYEGFLEGvkaalllaglrglagavavlIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 628 ESLQSKQDSERSAHAKEMET----MQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQA 703
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 704 KYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVS 783
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317840703 784 AQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 847
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
588-1137 |
6.78e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 6.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 588 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMQAKLMKIIKEKeDSLE 664
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEALERQKEAIERQL-ASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 665 AVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKEL---EVLQAKyTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKL 741
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeEQLRVK-EKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 742 ELETLRQQLEGAEKQI--------------KNLETERNAESSKKE----KFASTSEEAVSAQTRMQDTVNKLH------- 796
Cdd:TIGR02169 330 EIDKLLAEIEELEREIeeerkrrdklteeyAELKEELEDLRAELEevdkEFAETRDELKDYREKLEKLKREINelkreld 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 797 QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ 876
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 877 LKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLkAK 942
Cdd:TIGR02169 490 RELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIEL-LK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 943 YEKASSET-----KTKHEEILQNLQKM---------LADTEDKLKAA-------------QEANRDLM------------ 983
Cdd:TIGR02169 569 RRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAfkyvfgdtlvvedIEAARRLMgkyrmvtlegel 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 984 -------------QDMEELKTQADKAKAAQTAED----------AMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTL 1040
Cdd:TIGR02169 649 feksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelssLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1041 KENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR-DEVTSH-QKLEEERS 1118
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAElSKLEEEVS 808
|
650
....*....|....*....
gi 1317840703 1119 VLNNQLLEMKKRLKKVYPR 1137
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLE 827
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
412-1133 |
1.05e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.07 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVsEKSRIMELEKDLALRAQEVAELRRRLESSKp 491
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE-EYLLYLDYLKLNEERIDLLQELLRDEQEEI- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 492 pgdvdmsLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD 571
Cdd:pfam02463 254 -------ESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 572 VIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAK 651
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 652 LMKIIKEKEDSLEAVKARldSAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDA 731
Cdd:pfam02463 398 ELKSEEEKEAQLLLELAR--QLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 732 LRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQT------------------------- 786
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAhgrlgdlgvavenykvaistavive 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 787 RMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR 866
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 867 LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKA 946
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL----EIQELQEKAESELAKEEILRRQLEIKKKEQRE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 947 SSETKTKHEEILQNLQKMLADTEDK----LKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 1022
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKineeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKV 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1023 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1102
Cdd:pfam02463 789 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750
....*....|....*....|....*....|.
gi 1317840703 1103 TRDEVTSHQKLEEERSVLNNQLLEMKKRLKK 1133
Cdd:pfam02463 869 LQELLLKEEELEEQKLKDELESKEEKEKEEK 899
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
527-1078 |
1.37e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 527 KEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKsKLEtAIASHQQAMEELKVSFSKGIGTDS 606
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK-ELE-ELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 607 AEFAELKTQIERLRLdyqhEIESLQSKQdsERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLN 686
Cdd:PRK03918 259 EKIRELEERIEELKK----EIEELEEKV--KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE-INGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 687 KLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKanSEGKLELETLRQQLEGAEKQIKNLETERNA 766
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK--RLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 767 ESSKKEKFASTSEEavsaqtrMQDTVNKLHQKEEQFNVLSSEL---------EKLRENLTDMEAKFKEKDDREDQLVKAK 837
Cdd:PRK03918 410 ITARIGELKKEIKE-------LKKAIEELKKAKGKCPVCGRELteehrkellEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 838 EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKHEEEKK 916
Cdd:PRK03918 483 RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 917 ELEEKLLELEKKMETSYNQ------------CQDLKAKYEKASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQ 984
Cdd:PRK03918 563 KKLDELEEELAELLKELEElgfesveeleerLKELEPFYNEYLELKDAEKE--LEREEKELKKLEEELDKAFEELAETEK 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 985 DMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETlasledtkqtnARLQNELDTLKennlKTVEELNKSKELLSVENQK 1064
Cdd:PRK03918 641 RLEELRKELEELEKKYSEEEYEELREEYLELSREL-----------AGLRAELEELE----KRREEIKKTLEKLKEELEE 705
|
570
....*....|....
gi 1317840703 1065 MEEFKKEIETLKQA 1078
Cdd:PRK03918 706 REKAKKELEKLEKA 719
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-848 |
2.10e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 2.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 353 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 432 EEKRKVEDLQFRVEEES-ITKGDLEvatvsekSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMSLSLLQEISAL 508
Cdd:COG4913 320 ALREELDELEAQIRGNGgDRLEQLE-------REIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 509 QEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALhtateklSKENESLRSkldhaNKEN--SDVIALwKSKLETAIAS 586
Cdd:COG4913 393 LEALEEELEALEEALAEAE----AALRDLRRELREL-------EAEIASLER-----RKSNipARLLAL-RDALAEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 587 HQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQH-------------EIES 629
Cdd:COG4913 456 DEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERvrtglpdperprlDPDS 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 630 LQSKQDSERSAHAKEMETMQAKLMKIIK-EKEDSLE----AV-------------------------------KARLDSA 673
Cdd:COG4913 536 LAGKLDFKPHPFRAWLEAELGRRFDYVCvDSPEELRrhprAItragqvkgngtrhekddrrrirsryvlgfdnRAKLAAL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 674 EDQhLVEMEDTLNKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQ------LSAVKEKLLDLDALRKANSEGKLELETLR 747
Cdd:COG4913 616 EAE-LAELEEELAEAEER---LEALEAELDALQERREALQRLAEYswdeidVASAEREIAELEAELERLDASSDDLAALE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 748 QQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnVLSSELEKLRENL--TDMEAKFKE 825
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL--ELRALLEERFAAAlgDAVERELRE 769
|
570 580
....*....|....*....|....
gi 1317840703 826 K-DDREDQLVKAKEKLENDIAEIM 848
Cdd:COG4913 770 NlEERIDALRARLNRAEEELERAM 793
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
352-1106 |
2.93e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.67 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMV---EAADREKVELLN 428
Cdd:pfam15921 115 LQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMlshEGVLQEIRSILV 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 429 QLEE-------EKRKVEDLQFRVEEESITKgdlevatvseksRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSL 501
Cdd:pfam15921 195 DFEEasgkkiyEHDSMSTMHFRSLGSAISK------------ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 502 LQEisalQEKLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLE 581
Cdd:pfam15921 263 QQH----QDRIEQLISEHEVEITGLTE----KASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 582 TAIASHQQAMEELKvsfsKGIGTDSAEFAELKTQierlRLDYQHEIESLQSkqdsersahakEMETMQAKLMKiiKEKED 661
Cdd:pfam15921 335 EAKRMYEDKIEELE----KQLVLANSELTEARTE----RDQFSQESGNLDD-----------QLQKLLADLHK--REKEL 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 662 SLEAVK-ARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAkyTEQSEVIGNFTSQLSAVKEKlldldalrkanSEGK 740
Cdd:pfam15921 394 SLEKEQnKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLK--AMKSECQGQMERQMAAIQGK-----------NESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 741 LELETLRQQLEGAEKQIKNLETERNAESSKKEkfasTSEEAVSaqtrmqDTVNKLHQKEEQFNVLSSELEKLRENLTDME 820
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLE----SSERTVS------DLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 821 AKFKEKDDREDQLVKAKEKLE---------NDIAEIMKMSGDNSSQLT-------------KMNDELRLKERSVEELQLK 878
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTECEalklqmaekDKVIEILRQQIENMTQLVgqhgrtagamqveKAQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 879 LTKANENASFLQKSIGEVTLKAEQSQQ-QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI 957
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM 690
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMladtEDKLKAAQ---EANRDLMQDMEELKTQADKAkaaqtaedAMQIMEQMTKEKTETLAsledtkqtnarLQ 1034
Cdd:pfam15921 691 ETTTNKL----KMQLKSAQselEQTRNTLKSMEGSDGHAMKV--------AMGMQKQITAKRGQIDA-----------LQ 747
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317840703 1035 NELDTLKEnnlkTVEELNKSKELLSVENQKMeefkkeietlkqaaaqkSQQLSALQEENVKLAEELGRTRDE 1106
Cdd:pfam15921 748 SKIQFLEE----AMTNANKEKHFLKEEKNKL-----------------SQELSTVATEKNKMAGELEVLRSQ 798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-1133 |
4.30e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 4.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 352 LQEALKEKQQHIEQLLAERD--------LERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRTMVEAADREK 423
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREkaeryqalLKEKREYEGYELLKEKEALERQKEAIERQ-LASLEEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 424 VELLNQLEEEKRKVEDLqfrveeesitkGDLEVATVSEKSRIMELEKDLALRAQEVAELR-RRLESSKPPGDVDMSlSLL 502
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDL-----------GEEEQLRVKEKIGELEAEIASLERSIAEKERElEDAEERLAKLEAEID-KLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 503 QEISALQEKLEaihtDHQGEMTSLKEHFGARE---EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSK 579
Cdd:TIGR02169 336 AEIEELEREIE----EERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 580 LETAIASHQQaMEELKVSFsKGIGTDSAEF-AELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETmQAKLMKIIKE 658
Cdd:TIGR02169 412 QEELQRLSEE-LADLNAAI-AGIEAKINELeEEKEDKALEIKKQEW-KLEQLAADLSKYEQELYDLKEE-YDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 659 KEDSLEAVKARLDSAEDQHL--VEMEDTLNK-------LQEAEIKVKE-----LEV-----LQAKYTEQSEV-------- 711
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRggRAVEEVLKAsiqgvhgTVAQLGSVGEryataIEVaagnrLNNVVVEDDAVakeaiell 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 712 ----IGNFTS-QLSAVKEKLLDLDALRKANSEG-KLELETLRQQLEGAEKQI-------KNLETER-------------- 764
Cdd:TIGR02169 568 krrkAGRATFlPLNKMRDERRDLSILSEDGVIGfAVDLVEFDPKYEPAFKYVfgdtlvvEDIEAARrlmgkyrmvtlege 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 765 ------------NAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQ 832
Cdd:TIGR02169 648 lfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 833 LVKAKEKLENDIAEIMkmsgdnsSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHE 912
Cdd:TIGR02169 728 LEQEEEKLKERLEELE-------EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 913 EEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI----------LQNLQKMLADTEDKLKAAQEANRDL 982
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqiksiekeIENLNGKKEELEEELEELEAALRDL 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 983 MQDMEELKTQADKAKAAqtaedamqiMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnNLKTVEELNKSKELLSVEN 1062
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQ---------LRELERKIEELEAQIEKKRKRLSELKAKLEALEE-ELSEIEDPKGEDEEIPEEE 950
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 1063 QKMEEFKKEIETLKQAaaqksqqLSALQEENVK----LAEELGRTRDEVTSHQKLEEERSVLnNQLLEMKKRLKK 1133
Cdd:TIGR02169 951 LSLEDVQAELQRVEEE-------IRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAI-LERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
416-844 |
4.72e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 4.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 416 VEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdlevatVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdv 495
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDE------------KRQQLERLRREREKAERYQALLKEKREYEGYE----- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 496 dmslsLLQEISALQEKLEAIhtdhQGEMTSLKEHFgareEAFQKEIkalhtatEKLSKENESLRSKLDHANKENSDVial 575
Cdd:TIGR02169 228 -----LLKEKEALERQKEAI----ERQLASLEEEL----EKLTEEI-------SELEKRLEEIEQLLEELNKKIKDL--- 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 576 wkskletaiashqqaMEELKVSFSKGIGTDSAEFAELKTQIErLRLDYQHEIESLQSKQDSERSAHAKEMEtmqaKLMKI 655
Cdd:TIGR02169 285 ---------------GEEEQLRVKEKIGELEAEIASLERSIA-EKERELEDAEERLAKLEAEIDKLLAEIE----ELERE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 656 IKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLdaLRKA 735
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKE----ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE--LQRL 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 736 NSegklELETLRQQLEGAEKQIKNLETERnaeSSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREN 815
Cdd:TIGR02169 419 SE----ELADLNAAIAGIEAKINELEEEK---EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
410 420
....*....|....*....|....*....
gi 1317840703 816 LTDMEAKFKEKDDREDQLVKAKEKLENDI 844
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
646-1140 |
7.50e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 7.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 646 ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemedtlNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEK 725
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIE--------ELIKEKE---KELEEVLREINEISSELPELREELEKLEKE 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 726 LLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLEtERNAESSKK-----------EKFASTSEEAVSAQTRMQDTVNK 794
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELE-ERIEELKKEieeleekvkelKELKEKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 795 LHQKEEQFNVLSSELEKLRENLTDMEakfkEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER---- 870
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltgl 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 871 SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYE---KAS 947
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTaelKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 948 SETKTKHEEILQNLQKMLADTEDKLKAAQE--ANRDLMQDMEELKTQA---DKAKAAQTAEDAMQIMEQMTKEKTETLAS 1022
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLkkyNLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1023 LEDTKQTNArLQNELDTLkENNLKTVEELNKS--KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEEL 1100
Cdd:PRK03918 545 KKELEKLEE-LKKKLAEL-EKKLDELEEELAEllKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE----LEREE 618
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1317840703 1101 GRTRDEVTSHQKLEEERSVLNNQLLEMKKRLKKVYPRYNK 1140
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
538-1132 |
9.34e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 59.74 E-value: 9.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 538 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 601
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 602 IGTDSAEFAELKTQIERLRLDYQHEIeslqsKQDSERSAHAKEmetmqaKLMKIIKEKEDSLEAVKARLDSAEDQhlveM 681
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK----M 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 682 EDTLNKLQEAEIKVKELE---VLQAKYTEQS-EVIGNFTSQLSAVKEKLLDLDALRKANSEG-KLELETLRQQLEGAEKQ 756
Cdd:pfam05483 257 KDLTFLLEESRDKANQLEektKLQDENLKELiEKKDHLTKELEDIKMSLQRSMSTQKALEEDlQIATKTICQLTEEKEAQ 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 757 IKNLETERNAESSKKEKFASTSeeaVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMeAKFKEKDDREDQLVKA 836
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATT---CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEM-TKFKNNKEVELEELKK 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 837 ----KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQqaarKHE 912
Cdd:pfam05483 413 ilaeDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKL----KNI 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 913 EEKKELEEKLLELEKKMETSYNQCQDLKaKYEKASSETKTKHEEILQNLQKmLADTEDKLKAAQEANRdlmqdmEELKTQ 992
Cdd:pfam05483 489 ELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQEERMLKQIEN-LEEKEMNLRDELESVR------EEFIQK 560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 993 ADKAKAAQtaedamqimeqmtkektetlasleDTKQTNARLQNELDTLKENNLKTVE-ELNKSKELLSVENQKMEEFKKE 1071
Cdd:pfam05483 561 GDEVKCKL------------------------DKSEENARSIEYEVLKKEKQMKILEnKCNNLKKQIENKNKNIEELHQE 616
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 1072 IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE----VTSHQKLEEERSVLNNQLLEMKKRLK 1132
Cdd:pfam05483 617 NKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiIDNYQKEIEDKKISEEKLLEEVEKAK 681
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
467-1134 |
1.32e-08 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 59.07 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 467 ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLlqEISALQEKLEA-------IHTDHQGEMTSLKEHFGAREEAfQK 539
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQL--TIQALQDELRAqrdlnqlLQQDFTTSPVDGEDKFSTPELT-EE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 540 EIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKvsfSKGIGTDSAEF--------AE 611
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEEMELR----IETQKQTLGARDESIKKLLEMLQ---SKGLPKKSGEEdwertrriAE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 612 LKTQIERLR-LDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQE 690
Cdd:pfam10174 190 AEMQLGHLEvLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTED 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 691 AEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLL----DLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNA 766
Cdd:pfam10174 270 REEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLalqtKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDA 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 767 E-----------SSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmeakfKEKDDREDQLVK 835
Cdd:pfam10174 350 LrlrleekesflNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQL-------RDKDKQLAGLKE 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 836 AKEKLENDiaeimkmSGDNSSQLTKMNDELRLKERSVEELQLKltKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEK 915
Cdd:pfam10174 423 RVKSLQTD-------SSNTDTALTTLEEALSEKERIIERLKEQ--REREDRERLEELESLKKENKDLKEKVSALQPELTE 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 916 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK 995
Cdd:pfam10174 494 KESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEE 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 996 AKAAQT-AEDAMQIMEQMTKEKT---ETLASLEDTKQTNARLQNeldtLKENNLKTVEELNKSKELlsvenQKMEEFKKE 1071
Cdd:pfam10174 574 SGKAQAeVERLLGILREVENEKNdkdKKIAELESLTLRQMKEQN----KKVANIKHGQQEMKKKGA-----QLLEEARRR 644
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317840703 1072 IETLKQAAAQksQQLSALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKRLKKV 1134
Cdd:pfam10174 645 EDNLADNSQQ--LQLEELMGALEKTRQELDATKARLSSTQQsLAEKDGHLTNLRAERRKQLEEI 706
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
676-1117 |
2.99e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 676 QHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEklLDLDALRK-----ANSEGKLELETLRQQL 750
Cdd:PTZ00121 1030 EELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKD--FDFDAKEDnradeATEEAFGKAEEAKKTE 1107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 751 EG-AEKQIKNLETERNAESSKKEKFASTSEEAVSAQ-TRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 828
Cdd:PTZ00121 1108 TGkAEEARKAEEAKKKAEDARKAEEARKAEDARKAEeARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEV 1187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 829 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKE-RSVEELQLK---LTKANENASFLQKSIGEVTLKAEQSQ 904
Cdd:PTZ00121 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAvKKAEEAKKDaeeAKKAEEERNNEEIRKFEEARMAHFAR 1267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 905 QQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQ 984
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 985 DMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETL--ASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELL---S 1059
Cdd:PTZ00121 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAkkKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkA 1427
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1317840703 1060 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTshQKLEEER 1117
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK--KKAEEAK 1483
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
718-1130 |
9.09e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 9.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 718 QLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERnaesskkekfastseEAVSAQTRMQDTVNKLHQ 797
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL---------------EKLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 798 KEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiAEIMKMSGDNSSQLTKMNDELRLKERSVEELQL 877
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 878 KLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL------------------ 939
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgllallflll 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 940 -KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMT 1013
Cdd:COG4717 294 aREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1014 K-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFKKEIETLKQAAAQKSQQL 1086
Cdd:COG4717 374 AllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELEEELEELEEELEELEEEL 448
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1317840703 1087 SALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEMKKR 1130
Cdd:COG4717 449 EELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
743-1118 |
1.26e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.21 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 743 LETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLT---DM 819
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSkimKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 820 EAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMND-ELRLKERSVEELQLKLTKANENASFLQKSIGEVTL 898
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQrTVREKERELVDCQRELEKLNKERRLLNQEKTELLV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 899 KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEA 978
Cdd:TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 979 NRDLMQDMEELKTQADKAKaaqtaedamqimEQMTKEKTETLASLEDTKQTNARLQNELDtLKENNLKTVEELNKSKELL 1058
Cdd:TIGR00606 428 ADEIRDEKKGLGRTIELKK------------EILEKKQEELKFVIKELQQLEGSSDRILE-LDQELRKAERELSKAEKNS 494
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317840703 1059 SVENQKMEE--FKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERS 1118
Cdd:TIGR00606 495 LTETLKKEVksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKS 556
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
626-1134 |
1.56e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 626 EIESLQSKQDSERSAHAKEMETMQaKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLN----KLQEAEIKVKELEVL 701
Cdd:PRK03918 211 EISSELPELREELEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEK-IRELEERIEelkkEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 702 QAKYTEQSEvignftsqLSAVKEKLLDldalrkANSEGKLELETLRQQLEGAEKQIKNLEternaesSKKEKFASTSEEA 781
Cdd:PRK03918 289 KEKAEEYIK--------LSEFYEEYLD------ELREIEKRLSRLEEEINGIEERIKELE-------EKEERLEELKKKL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 782 VSAQTRMQDtVNKLHQKEEQFNVLSSELEKLRENLTDMEakfKEKDDRE-DQLVKAKEKLENDIAEIMKMSGD---NSSQ 857
Cdd:PRK03918 348 KELEKRLEE-LEERHELYEEAKAKKEELERLKKRLTGLT---PEKLEKElEELEKAKEEIEEEISKITARIGElkkEIKE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 858 LTKMNDELR------------LKERSVEELQLKLTKANENASFLQKSIGEV--TLKAEQSQQQAARKHEEE--------- 914
Cdd:PRK03918 424 LKKAIEELKkakgkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKerKLRKELRELEKVLKKESEliklkelae 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 915 --KKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI--LQNLQKMLADTEDKLKAAQEANRDLMQDMEELK 990
Cdd:PRK03918 504 qlKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELekLEELKKKLAELEKKLDELEEELAELLKELEELG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 991 TqadkaKAAQTAEDAMQIMEQMTKEKTEtlasLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKK 1070
Cdd:PRK03918 584 F-----ESVEELEERLKELEPFYNEYLE----LKDAEKELEREEKELKKLEE-------ELDKAFEELAETEKRLEELRK 647
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317840703 1071 EIETLKQAAAQKSQQlsALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRLKKV 1134
Cdd:PRK03918 648 ELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
866-1140 |
4.12e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 866 RLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAaRKHEEEKKELEEKLLELEKKMEtsynqcqDLKAKYEK 945
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL-AELEAELEELRLELEELELELE-------EAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 946 ASSEtKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAmqimeqmtkEKTETLASLED 1025
Cdd:COG1196 293 LLAE-LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---------ELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1026 TKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1105
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270
....*....|....*....|....*....|....*
gi 1317840703 1106 EVTSHQKLEEERSVLNNQLLEMKKRLKKVYPRYNK 1140
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
800-1134 |
4.80e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 800 EQFNVLSSELEKLRENLtdMEAKFKEKDDREDQLVKAKEKLENDIAEIMKmsgdnssqltkmndELRLKERSVEELQLKL 879
Cdd:COG1196 213 ERYRELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEA--------------ELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 880 TKANEnasflqksigevtlkAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKyEKASSETKTKHEEILQ 959
Cdd:COG1196 277 EELEL---------------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE-LAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 960 NLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK--AKAAQTAEDAMQIMEQMTKEKTEtLASLEDTKQTNARLQNEL 1037
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEaeEELEELAEELLEALRAAAELAAQ-LEELEEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1038 DTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEER 1117
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
330
....*....|....*..
gi 1317840703 1118 SVLNNQLLEMKKRLKKV 1134
Cdd:COG1196 500 EADYEGFLEGVKAALLL 516
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
355-1135 |
4.83e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 355 ALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKvELLNQLEEEK 434
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE-ELKSELLKLE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 435 RKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgdvDMSLSLLQEISALQEKLEA 514
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE--------ELEKLQEKLEQLEEELLAK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 515 IHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEEL 594
Cdd:pfam02463 379 KKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 595 KvsfsKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKAR----- 669
Cdd:pfam02463 459 K----LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGrlgdl 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 670 -----LDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELE 744
Cdd:pfam02463 535 gvaveNYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 745 TLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQ----------TRMQDTVNKLHQKEEQFNVLSSELEKLRE 814
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEeglaeksevkASLSELTKELLEIQELQEKAESELAKEEI 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 815 NLTDMEAKFKEKDdREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDElRLKERSVEELQLKLTKANENASFLQKSIG 894
Cdd:pfam02463 695 LRRQLEIKKKEQR-EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQ-KIDEEEEEEEKSRLKKEEKEEEKSELSLK 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 895 EVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKA 974
Cdd:pfam02463 773 EKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 975 AQEANRDLmqdmEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKtvEELNKS 1054
Cdd:pfam02463 853 EEELERLE----EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE--ERIKEE 926
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1055 KELLSVENQKMEEFKKEIETLKQAAAQKSQQL----SALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKR 1130
Cdd:pfam02463 927 AEILLKYEEEPEELLLEEADEKEKEENNKEEEeernKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
....*
gi 1317840703 1131 LKKVY 1135
Cdd:pfam02463 1007 LIRAI 1011
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
520-1098 |
7.80e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.37 E-value: 7.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 520 QGEMTSLKEHFGAREEAFQKEIKALhtatEKLSKENESLRSKLDHANKENSDVialwkSKLETAIASHQQAMEELKvsfs 599
Cdd:PRK01156 137 QGEMDSLISGDPAQRKKILDEILEI----NSLERNYDKLKDVIDMLRAEISNI-----DYLEEKLKSSNLELENIK---- 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 600 KGIGTDSAEFAELKTQIERLRLDYQHEIESLQskqdsersaHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--H 677
Cdd:PRK01156 204 KQIADDEKSHSITLKEIERLSIEYNNAMDDYN---------NLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKnnY 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 678 LVEMEDTLNKLQEAEIKVKELEV-----LQAKYTEQSEVIGNFTSQLS---AVKEKLLDLDALRKANSEGKLELETLRQQ 749
Cdd:PRK01156 275 YKELEERHMKIINDPVYKNRNYIndyfkYKNDIENKKQILSNIDAEINkyhAIIKKLSVLQKDYNDYIKKKSRYDDLNNQ 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 750 LEGAEKQIKNLETERNAESSKKEKFastsEEAVSAQTRMQDTVNK-LHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 828
Cdd:PRK01156 355 ILELEGYEMDYNSYLKSIESLKKKI----EEYSKNIERMSAFISEiLKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQ 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 829 REDQLVKAKEKLENDiAEIMKMSGDNSSQLTKMNDELrlKERSVEELQLKLTKANENASFLQKSIGEVTlkaEQSQQQAA 908
Cdd:PRK01156 431 RIRALRENLDELSRN-MEMLNGQSVCPVCGTTLGEEK--SNHIINHYNEKKSRLEEKIREIEIEVKDID---EKIVDLKK 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 909 RKheeekkelEEKLLELEKKMETSYNQCQDLKAKYEKassetktkheeiLQNLQKMLADTEDKLKAAQEANRDL-MQDME 987
Cdd:PRK01156 505 RK--------EYLESEEINKSINEYNKIESARADLED------------IKIKINELKDKHDKYEEIKNRYKSLkLEDLD 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 988 ELKTQADKAKAAQTAEDAMQIMEQmTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEE----LNKSKELLSVENQ 1063
Cdd:PRK01156 565 SKRTSWLNALAVISLIDIETNRSR-SNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENeannLNNKYNEIQENKI 643
|
570 580 590
....*....|....*....|....*....|....*
gi 1317840703 1064 KMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAE 1098
Cdd:PRK01156 644 LIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRIND 678
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
865-1130 |
8.73e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 8.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 865 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 934
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 935 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 1014
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1015 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1094
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270
....*....|....*....|....*....|....*.
gi 1317840703 1095 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKR 1130
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELK 436
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
360-1095 |
9.60e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 9.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 360 QQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVED 439
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 440 LQFRVEEESITKGDL--EVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEIsalQEKLEAIHT 517
Cdd:TIGR00618 231 LREALQQTQQSHAYLtqKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAH---IKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 518 DHQGEMTSLKEHFGAREEAFQKeiKALHTATEKLSKENESLRSKLDHANKENSDviALWKSKLETAIASHQQAMEELKVS 597
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMK--RAAHVKQQSSIEEQRRLLQTLHSQEIHIRD--AHEVATSIREISCQQHTLTQHIHT 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 598 FSKGIGTDSAEFAELKTQIERLRlDYQHEIESLQSKQDSERS--AHAKEMETMQaklmkiiKEKEDSLEAVKARLDSAED 675
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQ-REQATIDTRTSAFRDLQGqlAHAKKQQELQ-------QRYAELCAAAITCTAQCEK 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 676 QHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSA----VKEKLLDLDALRKANSEGKLELETLRQQLE 751
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEepcpLCGSCIHPNPARQDIDNPGPLTRRMQRGEQ 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 752 GAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREnLTDMEAKFKEKDDRED 831
Cdd:TIGR00618 536 TYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQ 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 832 QLVKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ--------KSIGEVTLKAEQS 903
Cdd:TIGR00618 615 HALLRKLQPEQDLQDV-------RLHLQQCSQELALKLTALHALQLTLTQERVREHALSirvlpkelLASRQLALQKMQS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 904 QQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEAN-RDL 982
Cdd:TIGR00618 688 EKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHfNNN 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 983 MQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE---DTKQTNARLQNELDTLKENNLKT-VEELNKSKELL 1058
Cdd:TIGR00618 768 EEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGqeiPSDEDILNLQCETLVQEEEQFLSrLEEKSATLGEI 847
|
730 740 750
....*....|....*....|....*....|....*..
gi 1317840703 1059 SVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1095
Cdd:TIGR00618 848 THQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
742-1133 |
1.06e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 742 ELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEA 821
Cdd:TIGR04523 153 ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 822 KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAE 901
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 902 QSQQQAARKHEEEKKELEEKLLELEKKMEtsyNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEaNRD 981
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLN---EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQE-IKN 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 982 LMQDMEELKTQADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE 1061
Cdd:TIGR04523 389 LESQINDLESKIQNQE--KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1062 NQKMEEFKKEIETLKQAA-------AQKSQQLSALQEENVKLAEELGRTRDEVTS----HQKLEEERSVLNNQLLEMKKR 1130
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLeqkqkelKSKEKELKKLNEEKKELEEKVKDLTKKISSlkekIEKLESEKKEKESKISDLEDE 546
|
...
gi 1317840703 1131 LKK 1133
Cdd:TIGR04523 547 LNK 549
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
346-893 |
1.10e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 346 ISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQhvleLEAKMDQLRTMVEAADR---- 421
Cdd:PRK01156 182 ISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNN----LKSALNELSSLEDMKNRyese 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 422 ------------EKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMElekDLALRAQEVAELRRRLES- 488
Cdd:PRK01156 258 iktaesdlsmelEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILS---NIDAEINKYHAIIKKLSVl 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 489 SKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREE---------AFQKEIKALHTAT-EKLSKENESL 558
Cdd:PRK01156 335 QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEyskniermsAFISEILKIQEIDpDAIKKELNEI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 559 RSKLDHANkenSDVialwkSKLETAIASHQQAMEELK--VSFSKGIGTDSAEFAELKTQ-IERLRLDYQHEIESLQSKQD 635
Cdd:PRK01156 415 NVKLQDIS---SKV-----SSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGTTLGEEkSNHIINHYNEKKSRLEEKIR 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 636 S-ERSAHAKEMETMQAKLMK--IIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKVKE---------LEVLQA 703
Cdd:PRK01156 487 EiEIEVKDIDEKIVDLKKRKeyLESEEINKSINEYNKIESARAD-LEDIKIKINELKDKHDKYEEiknrykslkLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 704 KYTEQSevigNFTSQLSAVkeklldldalrkansegklELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVS 783
Cdd:PRK01156 566 KRTSWL----NALAVISLI-------------------DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIR 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 784 aqtRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLeNDIAEIMKMSgdnSSQLTKMND 863
Cdd:PRK01156 623 ---EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRI-NDIEDNLKKS---RKALDDAKA 695
|
570 580 590
....*....|....*....|....*....|
gi 1317840703 864 ELRLKERSVEELQLKLTKANENASFLQKSI 893
Cdd:PRK01156 696 NRARLESTIEILRTRINELSDRINDINETL 725
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
543-1129 |
1.14e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.13 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 543 ALHTATEKLSKENESLRSKldHANKENSDVIalwkSKLETAIASHQQAMEELKV-SFSKGIGTDSAEFAELKTQIerlrl 621
Cdd:TIGR01612 1048 AIHTSIYNIIDEIEKEIGK--NIELLNKEIL----EEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADEINKI----- 1116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 622 dyQHEIESLQSKQDSersaHAKEMEtmqaklmKIIKEKEDSLEAVKARLDSAEDqhlveMEDTLNKLQEAEIKVKELEVL 701
Cdd:TIGR01612 1117 --KDDIKNLDQKIDH----HIKALE-------EIKKKSENYIDEIKAQINDLED-----VADKAISNDDPEEIEKKIENI 1178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 702 QAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRK--------ANSEGKLELETLRQQLEGAEKQIKNLETE-RNAESSKKE 772
Cdd:TIGR01612 1179 VTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEvkginlsyGKNLGKLFLEKIDEEKKKSEHMIKAMEAYiEDLDEIKEK 1258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 773 KFASTSEEAVSAQTRMQ-DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMS 851
Cdd:TIGR01612 1259 SPEIENEMGIEMDIKAEmETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHN 1338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 852 GD---------NSSQLTKMN------DELRLKERSVEELQLKLTKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHEE 913
Cdd:TIGR01612 1339 SDinlylneiaNIYNILKLNkikkiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDdINLEECKSKIESTldDKDID 1418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 914 EKKELEEKLLELEKKMETSYNQcqdlkakYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQ 992
Cdd:TIGR01612 1419 ECIKKIKELKNHILSEESNIDT-------YFKNADENNENVLLLFKNIEMADNKSQHILKIKKDnATNDHDFNINELKEH 1491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 993 ADKAKAAQTAEDA--------MQIMEQMTKEKTETLasledTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE--- 1061
Cdd:TIGR01612 1492 IDKSKGCKDEADKnakaieknKELFEQYKKDVTELL-----NKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaek 1566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1062 -NQKMEEFKKEIETLKQAAAQKSQ--------QLSALQEEN--VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEMK 1128
Cdd:TIGR01612 1567 sEQKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkfLKISDIKKKINDCLKETESIEKKISSFsiDSQDTELK 1646
|
.
gi 1317840703 1129 K 1129
Cdd:TIGR01612 1647 E 1647
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
646-1131 |
1.40e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 646 ETMQAK--LMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQ-EAEIKVKELEV---LQAKYTEQSEVIGNFTSQL 719
Cdd:pfam01576 5 EEMQAKeeELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQaETELCAEAEEMrarLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 720 SAVKEKLLDLDALRKANSEGKLELEtlrQQLEGAEKQIKNLETERNAESSKKEKF-----------ASTSEEAVSAQTRM 788
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLE---EQLDEEEAARQKLQLEKVTTEAKIKKLeedillledqnSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 789 QDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLK 868
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 869 ERSVEELQLKLTKANENASFLQKSIGEVT---------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL 939
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEaqiselqedLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQEL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 940 KAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDA-----MQIMEQMTK 1014
Cdd:pfam01576 322 RSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAelqaeLRTLQQAKQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1015 EK-----------TETLASLEDTKQTNA-------RLQNELDTLKeNNLKTVEELN--KSKELLSVENQkMEEFKKEIET 1074
Cdd:pfam01576 402 DSehkrkklegqlQELQARLSESERQRAelaeklsKLQSELESVS-SLLNEAEGKNikLSKDVSSLESQ-LQDTQELLQE 479
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1317840703 1075 LKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRL 1131
Cdd:pfam01576 480 ETRQKLNLSTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
427-1075 |
1.92e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 427 LNQLEEEKRKVEDLQFRVEEEsitkgdlevatvseksrIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEIS 506
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE-----------------IKKKEKELEKLNNKYNDLKKQKEELE-----NELNLLEKEKL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 507 ALQEKLEAIHTDHqgemtSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD---VIALWKSKLETA 583
Cdd:TIGR04523 184 NIQKNIDKIKNKL-----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQL 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 584 IASHQQAMEELK------VSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIK 657
Cdd:TIGR04523 259 KDEQNKIKKQLSekqkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 658 EKEDSLEAVKARLDSAEDqhlvemeDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDalrKANS 737
Cdd:TIGR04523 339 QLNEQISQLKKELTNSES-------ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE---KLNQ 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 738 EGKLELETLRQQLEGAEKQIKNLETER-----------NAESSKKEKFASTSEEAVSAQTRMQDTV-------NKLHQKE 799
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIiknnseikdltNQDSVKELIIKNLDNTRESLETQLKVLSrsinkikQNLEQKQ 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 800 EQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR--LKERSVEELQL 877
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNK 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 878 KLTKANENASFLQKSIGEVTLKAEQSQQQaarkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtKTKHEEI 957
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKE--------KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI-IKNIKSK 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADkakaaqtaeDAMQIMEQMTKEKTETlaslEDTKQTNARLQNEL 1037
Cdd:TIGR04523 640 KNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID---------DIIELMKDWLKELSLH----YKKYITRMIRIKDL 706
|
650 660 670
....*....|....*....|....*....|....*...
gi 1317840703 1038 DTLKENNLKTVEELnkskellsvenQKMEEFKKEIETL 1075
Cdd:TIGR04523 707 PKLEEKYKEIEKEL-----------KKLDEFSKELENI 733
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
742-1004 |
2.23e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 742 ELETLRQQLEGAEKQIKNLETERNAESSKKEkfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEA 821
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEK---ALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 822 KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERSVEELQLKLTKanenasfLQKSIGEVTLKAE 901
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEE-------LRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 902 QSQQQAARKheeekkeleekllelekkmETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADTEDKLKAAQEANRD 981
Cdd:COG4942 168 ELEAERAEL-------------------EALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEE 224
|
250 260
....*....|....*....|...
gi 1317840703 982 LMQDMEELKTQADKAKAAQTAED 1004
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1043 |
3.52e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.38 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQF------------RVEEESITKGDLEVATVSEKSRI 465
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAiagimkirpeftKLQQEFNTLESAELRLSHLHFGY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 466 MELEKDLALRAQEVAELRRRLESSKPPGDVDMSLS---LLQEISAL-------QEKLEAIHTDH----QGEMTSLKEH-- 529
Cdd:pfam12128 268 KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdeLNGELSAAdaavakdRSELEALEDQHgaflDADIETAAADqe 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 530 ----FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSKLE----------TAIASHQQAME-EL 594
Cdd:pfam12128 348 qlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardrqlAVAEDDLQALEsEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 595 KVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhaKEMETMQAKLMKIIKEKEDsLEAVKARLDSAE 674
Cdd:pfam12128 425 REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD--ERIERAREEQEAANAEVER-LQSELRQARKRR 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 675 DQHLVEMEDTLNKLQEAEIKVKELE-VLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLE-- 751
Cdd:pfam12128 502 DQASEALRQASRRLEERQSALDELElQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNly 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 752 GAEKQIKNLETERNAESSKKEKfastsEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDRED 831
Cdd:pfam12128 582 GVKLDLKRIDVPEWAASEEELR-----ERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLR 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 832 QLVKAKE----KLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ--LKLTKANENASFLQKSIG----------- 894
Cdd:pfam12128 657 RLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGaldaqlallka 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 895 -----EVTLKAEQSQQQAARKHEEEKK----ELEEKLLELEKKMETSYNQCQDLKAK------------------YEKAS 947
Cdd:pfam12128 737 aiaarRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEvlryfdwyqetwlqrrprLATQL 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 948 SETKTKHEEILQNLQKMLADTEDKLKAAQ---EANRDLMQDMEELKTQAD--KAKAAQTAEDAMQimEQMTKEKTETLAS 1022
Cdd:pfam12128 817 SNIERAISELQQQLARLIADTKLRRAKLEmerKASEKQQVRLSENLRGLRceMSKLATLKEDANS--EQAQGSIGERLAQ 894
|
730 740
....*....|....*....|.
gi 1317840703 1023 LEDTKQTNARLQNELDTLKEN 1043
Cdd:pfam12128 895 LEDLKLKRDYLSESVKKYVEH 915
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
742-1133 |
3.61e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 742 ELETLRQQLEGAEKQIKNLETERNaesSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEA 821
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLN---KDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 822 KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAE 901
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 902 QSQQ-----QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQ 976
Cdd:TIGR04523 198 KLELllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 977 EANR---DLMQDMEELKTQA---DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDT-------KQTNARLQNELDTLKEN 1043
Cdd:TIGR04523 278 QNNKkikELEKQLNQLKSEIsdlNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNnkiisqlNEQISQLKKELTNSESE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1044 NLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTs 1109
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQIKKLQQEKELLEKEIERLKETII- 436
|
410 420
....*....|....*....|....
gi 1317840703 1110 hqKLEEERSVLNNQLLEMKKRLKK 1133
Cdd:TIGR04523 437 --KNNSEIKDLTNQDSVKELIIKN 458
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
409-863 |
4.21e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 409 MDQLRTMVEA-ADREKVELLNQLEEEKRKVEDLQFRVEEEsitkgdlevatvseKSRIMELEKDLALRAQEVAELRRRLE 487
Cdd:PRK02224 189 LDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQ--------------REQARETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 488 SskppgdvdmslsLLQEISALQEKLEAIHTDhqgemtslkehfgarEEAFQKEIKALHTATEKLSKENESLRSKLDHANK 567
Cdd:PRK02224 255 T------------LEAEIEDLRETIAETERE---------------REELAEEVRDLRERLEELEEERDDLLAEAGLDDA 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 568 EnSDVIALWKSKLETAIASHQQAMEELKVSFSkgigtdsaefaELKTQIERLRldyqHEIESLQSKQDSERSAhAKEMET 647
Cdd:PRK02224 308 D-AEAVEARREELEDRDEELRDRLEECRVAAQ-----------AHNEEAESLR----EDADDLEERAEELREE-AAELES 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 648 MQAKLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLL 727
Cdd:PRK02224 371 ELEEAREAVEDRREEIEELEEEIEELRER----FGDAPVDLGNAE---DFLEELREERDELREREAELEATLRTARERVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 728 DLDALRKA-----------NSEGKLELETLRQQLEGAEKQIKNLETERNAESSK---KEKFASTSEEAVSAQTRMQDTVN 793
Cdd:PRK02224 444 EAEALLEAgkcpecgqpveGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERlerAEDLVEAEDRIERLEERREDLEE 523
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 794 KLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMND 863
Cdd:PRK02224 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER 593
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
941-1133 |
5.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 941 AKYEKASSETKTKHEEI---LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAE--------DAMQIM 1009
Cdd:COG4942 37 AELEKELAALKKEEKALlkqLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQkeelaellRALYRL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1010 EQMTKEKTetLASLEDTKQTNARLQNeLDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSAL 1089
Cdd:COG4942 117 GRQPPLAL--LLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAL 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1317840703 1090 QEENVKLAEELGRTRDEVTSH-QKLEEERSVLNNQLLEMKKRLKK 1133
Cdd:COG4942 194 KAERQKLLARLEKELAELAAElAELQQEAEELEALIARLEAEAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
661-887 |
8.87e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 8.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 661 DSLEAVKARLDSAEDQhLVEMEDTLNKLQEAEIKV-KELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAlrkanseg 739
Cdd:COG4942 20 DAAAEAEAELEQLQQE-IAELEKELAALKKEEKALlKQLAALERRIAALARRIRALEQELAALEAELAELEK-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 740 klELETLRQQLEGAEKQIKNL--ETERNAESSKkEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLT 817
Cdd:COG4942 91 --EIAELRAELEAQKEELAELlrALYRLGRQPP-LALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 818 DMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 887
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-1118 |
9.76e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 9.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERA-------EVAKATSHVGEIEQELALARDGHDQHVLELE 406
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAarqklqlEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 407 AKMDQLRTMVE--AADREKVELLNQLEEEKRKV-EDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELR 483
Cdd:pfam01576 156 LLEERISEFTSnlAEEEEKAKSLSKLKNKHEAMiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 484 RRLesSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLD 563
Cdd:pfam01576 236 AQL--AKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLD 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 564 HANKENSdvialWKSKLETAIASHQQAMEELKVSFSKGIG----TDSAEFAELKTQIERLRLDYQHeIESLQSKQDSERS 639
Cdd:pfam01576 314 TTAAQQE-----LRSKREQEVTELKKALEEETRSHEAQLQemrqKHTQALEELTEQLEQAKRNKAN-LEKAKQALESENA 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 640 AHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQ-EAEIKVKELEVLQAKYTEQSEVIGNF 715
Cdd:pfam01576 388 ELQAELRTLQQAKQDSehkRKKLEGQLQELQARLSESERQR-AELAEKLSKLQsELESVSSLLNEAEGKNIKLSKDVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 716 TSQLSAVKEkLLDLDALRKANSEGKL-----ELETLRQQLE-------GAEKQIKNLETERNAESSKKEKFASTSEEAVS 783
Cdd:pfam01576 467 ESQLQDTQE-LLQEETRQKLNLSTRLrqledERNSLQEQLEeeeeakrNVERQLSTLQAQLSDMKKKLEEDAGTLEALEE 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 784 AQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMND 863
Cdd:pfam01576 546 GKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERD 625
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 864 ELRLKERSVEELQLKLTKANENASFLQKSIGEVT--LKAEQ----SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQ 937
Cdd:pfam01576 626 RAEAEAREKETRALSLARALEEALEAKEELERTNkqLRAEMedlvSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELE 705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 938 D------------------LKAKYEKASSETKTKHEEILQNLQKMLADTEDKLK-------AAQEANRDLMQDMEELKTQ 992
Cdd:pfam01576 706 DelqatedaklrlevnmqaLKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEderkqraQAVAAKKKLELDLKELEAQ 785
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 993 ADKAKAAQtaEDAMQIMEQMTKEKTETLASLEDTKQTNARLqneLDTLKENN--LKTVE-ELNKSKELLSVENQKMEEFK 1069
Cdd:pfam01576 786 IDAANKGR--EEAVKQLKKLQAQMKDLQRELEEARASRDEI---LAQSKESEkkLKNLEaELLQLQEDLAASERARRQAQ 860
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1317840703 1070 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvtshqkLEEERS 1118
Cdd:pfam01576 861 QERDELADEIASGASGKSALQDEKRRLEARIAQLEEE------LEEEQS 903
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-568 |
1.02e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 431 EEEKRKVEDL---QFRVEEESITKGDLEVATVSEKSRIMELEKDLA-LRAQEVAELRRRLESSKppgdvdmslSLLQEIS 506
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRADLAELA---------ALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 507 ALQEKLEAIHTDHQGEMTSLKEHFGAREEA---FQKEIKALHTATEKLSKENESLRSKLDHANKE 568
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-528 |
1.10e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.47 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 421 REKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmsls 500
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEAR-----------SEERREIRKDREISRLDREIERLERELEEER---------- 485
|
170 180 190
....*....|....*....|....*....|..
gi 1317840703 501 llQEISALQEKLE----AIHTDHQGEMTSLKE 528
Cdd:COG2433 486 --ERIEELKRKLErlkeLWKLEHSGELVPVKV 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-594 |
1.91e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 414
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgd 494
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE------- 772
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 495 vdmslsllQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSK-ENESL---RSKLDHANKENS 570
Cdd:COG4913 773 --------ERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLpeyEERFKELLNENS 844
|
250 260
....*....|....*....|....*
gi 1317840703 571 DV-IALWKSKLETAIASHQQAMEEL 594
Cdd:COG4913 845 IEfVADLLSKLRRAIREIKERIDPL 869
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-766 |
2.49e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVL-----ELEAKMDQLRTMVEAADREK---VE 425
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqeleALEAELAELPERLEELEERLeelRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 426 LLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSE--------KSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDM 497
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEELQDlaeeleelQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 498 SLSLLQEISALQEKLEAIHTdHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsDVIALWK 577
Cdd:COG4717 241 LEERLKEARLLLLIAAALLA-LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL--PALEELE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 578 SKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEiESLQSKQDSERSAHAKEMETMQAKLMKiiK 657
Cdd:COG4717 318 EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE-ELEQEIAALLAEAGVEDEEELRAALEQ--A 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 658 EKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLdalrkans 737
Cdd:COG4717 395 EEYQELKEELEELEEQLEELLGELEELLEALDEEELE-EELEELEEELEELEEELEELREELAELEAELEQL-------- 465
|
410 420
....*....|....*....|....*....
gi 1317840703 738 EGKLELETLRQQLEGAEKQIKNLETERNA 766
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
587-1140 |
2.50e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 587 HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAv 666
Cdd:TIGR01612 669 YEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHG- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 667 karldsaedqhlvEMEDTLNK-LQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKlelet 745
Cdd:TIGR01612 748 -------------EINKDLNKiLEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDA----- 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 746 lRQQLEGAEKQIKNLETERNaESSK--------KEKFASTSEEAVSAQTRMQDTVNKLHqkeEQFNVLSSEL--EKLREN 815
Cdd:TIGR01612 810 -KQNYDKSKEYIKTISIKED-EIFKiinemkfmKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELTNKIkaEISDDK 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 816 LTDMEAKFKEKddredqlvkakEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGe 895
Cdd:TIGR01612 885 LNDYEKKFNDS-----------KSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNID- 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 896 vTLKAEQSQQQAARKHEEekkeleekllelekkmETSYNQCQDLKAKYEKAS-SETKTKHEEILQ---NLQKMLADTEDK 971
Cdd:TIGR01612 953 -TIKESNLIEKSYKDKFD----------------NTLIDKINELDKAFKDASlNDYEAKNNELIKyfnDLKANLGKNKEN 1015
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 972 LKAAQ-----EANRDLMQDMEELKTQADKAKAAqTAEDAMQIMEQMTKEKTETLASLE-------DTKQTN-------AR 1032
Cdd:TIGR01612 1016 MLYHQfdekeKATNDIEQKIEDANKNIPNIEIA-IHTSIYNIIDEIEKEIGKNIELLNkeileeaEINITNfneikekLK 1094
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1033 LQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSAlqeenvkLAEELGRTRDEVTSHQK 1112
Cdd:TIGR01612 1095 HYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKA-------QINDLEDVADKAISNDD 1167
|
570 580
....*....|....*....|....*...
gi 1317840703 1113 LEEERSVLNNQLLEMKKRlKKVYPRYNK 1140
Cdd:TIGR01612 1168 PEEIEKKIENIVTKIDKK-KNIYDEIKK 1194
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
607-1015 |
2.59e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 607 AEFAELKTQIERLRldyqHEIESLQSKQDS-ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEdQHLVEMEDTL 685
Cdd:COG4717 88 EEYAELQEELEELE----EELEELEAELEElREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE-ERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 686 NKLQEAEikvKELEVLQAKYTEQSEVIGNftSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 765
Cdd:COG4717 163 EELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 766 AEsSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNV-----------------LSSELEKLRENLTDMEAKFKEKDD 828
Cdd:COG4717 238 AA-ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgllallfllLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 829 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ---KSIGEVTLKAEQSQQ 905
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEagvEDEEELRAALEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 906 QAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLADTEDKLKAAQEANR--DLM 983
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELAELEAELEQLEEDGElaELL 475
|
410 420 430
....*....|....*....|....*....|...
gi 1317840703 984 QDMEELKTQ-ADKAKAAQTAEDAMQIMEQMTKE 1015
Cdd:COG4717 476 QELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
409-985 |
2.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 409 MDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQfrveeESITKGDLEVATVseksRIMELEKDLALRAQEVAELRRRL 486
Cdd:COG4913 234 FDDLERAHEALEdaREQIELLEPIRELAERYAAAR-----ERLAELEYLRAAL----RLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 487 ESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAlhtateklskenesLRSKLDhan 566
Cdd:COG4913 305 AR------------LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIER--------------LERELE--- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 567 kensdvialwksKLETAIASHQQAMEELKVSFSkgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHakeme 646
Cdd:COG4913 356 ------------ERERRRARLEALLAALGLPLP----ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL----- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 647 tmqAKLMKIIKEKEDSLEAVKARlDSAEDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKYTEQS-----E-VIGNF- 715
Cdd:COG4913 415 ---RDLRRELRELEAEIASLERR-KSNIPARLLALRDALA--EALGLDEAELpfvgELIEVRPEEERwrgaiErVLGGFa 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 716 ------TSQLSAVKEKL--------LDLDALRKANSE------------GKLELET------LRQQLEgaekQIKNLETE 763
Cdd:COG4913 489 ltllvpPEHYAAALRWVnrlhlrgrLVYERVRTGLPDperprldpdslaGKLDFKPhpfrawLEAELG----RRFDYVCV 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 764 RNAESSKKEKFASTSEEAVSAQTRM----------------QDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 827
Cdd:COG4913 565 DSPEELRRHPRAITRAGQVKGNGTRhekddrrrirsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 828 DREDQLVKAKEKLENDI------AEImkmsGDNSSQLTKM---NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTL 898
Cdd:COG4913 645 ERREALQRLAEYSWDEIdvasaeREI----AELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEK 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 899 KAEQSQQQAARKHEEEKKELEEKLLELEkkmetsynqcQDLKAKYEKASSETKTKheEILQNLQKMLADTEDKLKAAQEA 978
Cdd:COG4913 721 ELEQAEEELDELQDRLEAAEDLARLELR----------ALLEERFAAALGDAVER--ELRENLEERIDALRARLNRAEEE 788
|
....*..
gi 1317840703 979 NRDLMQD 985
Cdd:COG4913 789 LERAMRA 795
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
352-1099 |
3.92e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 352 LQEALKEKQQHIEQLLAERDlERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR00606 211 YLKQYKEKACEIRDQITSKE-AQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 432 EekrKVEDLQFRVEEESITKGDLEVATVSEKSR-IMELEKDLALRAQEvaelRRRLESSKPPGDVDMSLSLLQEiSALQE 510
Cdd:TIGR00606 290 L---KMEKVFQGTDEQLNDLYHNHQRTVREKEReLVDCQRELEKLNKE----RRLLNQEKTELLVEQGRLQLQA-DRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 511 KLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTatekLSKENESLRSKLdhankensdvIALWKSKLETAIASHQQA 590
Cdd:TIGR00606 362 HIRARDSLIQSLATRLELDGFERGPFSERQIKNFHT----LVIERQEDEAKT----------AAQLCADLQSKERLKQEQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 591 MEELKVSFSKGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARL 670
Cdd:TIGR00606 428 ADEIRDEKKGLGRTIELKKEILEKKQEELK----FVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEV 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 671 DSAEDQHLVEMEDTLNKLQEAEIKVKELEVLqakyteqsevignfTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQL 750
Cdd:TIGR00606 504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTTR--------------TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYF 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 751 EGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ--------FNVLSSE-----LEKLRENL- 816
Cdd:TIGR00606 570 PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQlssyedklFDVCGSQdeesdLERLKEEIe 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 817 ------------TDMEAKFKEKDDREDQ--------LVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQ 876
Cdd:TIGR00606 650 ksskqramlagaTAVYSQFITQLTDENQsccpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 877 LKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKkmETSYNQCQDLKAKYEKASSETKTKHEE 956
Cdd:TIGR00606 730 GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE--EESAKVCLTDVTIMERFQMELKDVERK 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 957 ILQNLQKMlaDTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNE 1036
Cdd:TIGR00606 808 IAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317840703 1037 LDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEE 1099
Cdd:TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKE 948
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
633-1056 |
4.52e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.51 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 633 KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLD------SAEDQHLVEMEDTLN-KLQEAEIKVKELEVLQAKY 705
Cdd:pfam10174 275 KQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLEtltnqnSDCKQHIEVLKESLTaKEQRAAILQTEVDALRLRL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 706 TEQSEVIGNFTSQLSAVKE-------KLLDL-DAL----RKANSEGKlELETLRQQLEGAEKQIKNLE---TERNAESSK 770
Cdd:pfam10174 355 EEKESFLNKKTKQLQDLTEekstlagEIRDLkDMLdvkeRKINVLQK-KIENLQEQLRDKDKQLAGLKervKSLQTDSSN 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 771 KEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnVLSSELEKLRENLTDMEAKF----KEKDDREDQLVKAKEKLENDIAE 846
Cdd:pfam10174 434 TDTALTTLEEALSEKERIIERLKEQREREDR--ERLEELESLKKENKDLKEKVsalqPELTEKESSLIDLKEHASSLASS 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 847 IMKmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIgEVTLKAEQSQQQAARKHEEEKKELEEKLLELE 926
Cdd:pfam10174 512 GLK----KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNP-EINDRIRLLEQEVARYKEESGKAQAEVERLLG 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 927 KKMETSyNQCQDLKAKYEKASSETKTKH-EEILQNLQKMLADTEDKLKAAQEanrdlMQDMEELKTQADKAKAAQTAEDA 1005
Cdd:pfam10174 587 ILREVE-NEKNDKDKKIAELESLTLRQMkEQNKKVANIKHGQQEMKKKGAQL-----LEEARRREDNLADNSQQLQLEEL 660
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1317840703 1006 MQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE 1056
Cdd:pfam10174 661 MGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
828-1042 |
5.87e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 828 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK-AEQSQQQ 906
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 907 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA----KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 982
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 983 MQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1042
Cdd:COG4942 180 LAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
729-847 |
7.88e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 729 LDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLhQKEEQFNVLSSE 808
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV-RNNKEYEALQKE 97
|
90 100 110
....*....|....*....|....*....|....*....
gi 1317840703 809 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 847
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAEL 136
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
381-763 |
8.48e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.75 E-value: 8.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 381 TSHVGEIEQELALARDGHDQ-HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEesiTKGDLEVA-- 457
Cdd:PRK04778 78 TNSLPDIEEQLFEAEELNDKfRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQ---LKDLYRELrk 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 458 TVSEKS-----RIMELEKDLALRAQEVAELRRRLESskppGDV----DMSLSLLQEISALQEKLEAI-------HTDHQG 521
Cdd:PRK04778 155 SLLANRfsfgpALDELEKQLENLEEEFSQFVELTES----GDYvearEILDQLEEELAALEQIMEEIpellkelQTELPD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 522 EMTSLK--------EHFGAREEAFQKEIKALHTATEKLSKENESLrsKLDHANKENSDV---IALWKSKLETAIASHQQA 590
Cdd:PRK04778 231 QLQELKagyrelveEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIqerIDQLYDILEREVKARKYV 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 591 MEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQ---HEIESLQSkqdsersaHAKEMETMQAKLMKIIK---------- 657
Cdd:PRK04778 309 EKNSDT-LPDFLEHAKEQNKELKEEIDRVKQSYTlneSELESVRQ--------LEKQLESLEKQYDEITEriaeqeiays 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 658 EKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQEAEIKVKE-LEVLQAK------YTEQSEVIGNFTSQLSAVKEKLLDLD 730
Cdd:PRK04778 380 ELQEELEEILKQLEEIEKEQ-EKLSEMLQGLRKDELEAREkLERYRNKlheikrYLEKSNLPGLPEDYLEMFFEVSDEIE 458
|
410 420 430
....*....|....*....|....*....|...
gi 1317840703 731 ALRKANSEGKLELETLRQQLEGAEKQIKNLETE 763
Cdd:PRK04778 459 ALAEELEEKPINMEAVNRLLEEATEDVETLEEE 491
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
937-1086 |
9.42e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 46.09 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 937 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 1014
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317840703 1015 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1086
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
364-836 |
1.02e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 364 EQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQ 441
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELE----AELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 442 FRVEEesitkgdlevatvseksrIMELEKDLALRAQEVAELRRRLESSKppgdVDMSLSLLQEISALQEKLEAIHtdhqg 521
Cdd:COG4717 153 ERLEE------------------LRELEEELEELEAELAELQEELEELL----EQLSLATEEELQDLAEELEELQ----- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 522 emtslkehfgAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKG 601
Cdd:COG4717 206 ----------QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 602 IGTDSAEFAELKTQIERLRldyqheieslqskqdSERSAHAKEMETMQAkLMKIIKEKEDSLEAVKARLDSAEDQHLVEM 681
Cdd:COG4717 276 AGVLFLVLGLLALLFLLLA---------------REKASLGKEAEELQA-LPALEELEEEELEELLAALGLPPDLSPEEL 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 682 EDTLNKLQEAEIKVKELEVLQAKYtEQSEVIGNFTSQLSAVKEKllDLDALRKAnSEGKLELETLRQQLEGAEKQIKNLE 761
Cdd:COG4717 340 LELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVE--DEEELRAA-LEQAEEYQELKEELEELEEQLEELL 415
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1317840703 762 TERNAESSKKEKfASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREN--LTDMEAKFKEKDDREDQLVKA 836
Cdd:COG4717 416 GELEELLEALDE-EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAEE 491
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
778-1090 |
1.50e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.06 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 778 SEEAVSAQTrmqDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 857
Cdd:PRK11281 37 TEADVQAQL---DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 858 LTKmndelRLKERSVEELQLKLTKANENASFLQKSIGEVT--LKAEQSQQQAARKheeekkeleekllelekKMETSYNQ 935
Cdd:PRK11281 114 TRE-----TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNsqLVSLQTQPERAQA-----------------ALYANSQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 936 CQDLKA--KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMeeLKTQADKAKAAQTAEDAMQIMEQ-- 1011
Cdd:PRK11281 172 LQQIRNllKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQea 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1012 -------MTKEKTETLASLEDT--KQTNARLQNELDT---LKENNLKTVEELNKskelLSVENQKMeefKKEIETLKQAA 1079
Cdd:PRK11281 250 inskrltLSEKTVQEAQSQDEAarIQANPLVAQELEInlqLSQRLLKATEKLNT----LTQQNLRV---KNWLDRLTQSE 322
|
330
....*....|.
gi 1317840703 1080 AQKSQQLSALQ 1090
Cdd:PRK11281 323 RNIKEQISVLK 333
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
535-838 |
1.50e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 535 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAE----FA 610
Cdd:COG5185 242 ESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEeqlaAA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 611 ELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsLEAVKARLDSAEDQHLVEMEDTLNKLQE 690
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE--LSKSSEELDSFKDTIESTKESLDEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 691 AEIKVKE-LEVLQAKYTEQSEVIGNFTSQLSAVKEKLldldalrKANSEGKLELETLRQQLEGAEKQIKNLETERNAESS 769
Cdd:COG5185 400 QRGYAQEiLATLEDTLKAADRQIEELQRQIEQATSSN-------EEVSKLLNELISELNKVMREADEESQSRLEEAYDEI 472
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 770 KKEKfASTSEEAVSAQTRMQDTVNKLHQKEEQFNV-LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE 838
Cdd:COG5185 473 NRSV-RSKKEDLNEELTQIESRVSTLKATLEKLRAkLERQLEGVRSKLDQVAESLKDFMRARGYAHILAL 541
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
588-1115 |
1.54e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 588 QQAMEELKVSFSKGIGTDSAEFAELKTQIERLR---LDYQHEIESLQSKQdSERSAHAKEMETMQAKLMKIIKEKEDSLE 664
Cdd:TIGR00606 229 KEAQLESSREIVKSYENELDPLKNRLKEIEHNLskiMKLDNEIKALKSRK-KQMEKDNSELELKMEKVFQGTDEQLNDLY 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 665 AVKARLDSAEDQHLVEMEDTLNKLQeaeikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSegklele 744
Cdd:TIGR00606 308 HNHQRTVREKERELVDCQRELEKLN------KERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA------- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 745 tLRQQLEGAEKqikNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmeakfk 824
Cdd:TIGR00606 375 -TRLELDGFER---GPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI-------- 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 825 ekDDREDQLVKAKEKLENDIAEIMKMSGdNSSQLTKMNDELRLKERsveelqlKLTKANENASFLQKSIGEVTLKAEQSQ 904
Cdd:TIGR00606 443 --ELKKEILEKKQEELKFVIKELQQLEG-SSDRILELDQELRKAER-------ELSKAEKNSLTETLKKEVKSLQNEKAD 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 905 QQAARKHEEEKKELEEKLLELEKKME-------TSYNQCQDLKAKYEK--------------------ASSETKTKHEEI 957
Cdd:TIGR00606 513 LDRKLRKLDQEMEQLNHHTTTRTQMEmltkdkmDKDEQIRKIKSRHSDeltsllgyfpnkkqledwlhSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMLADTE---------DKLKAAQEAN-----------RDLMQDMEELKTQADKAK---AAQTAEDAM--QIMEQM 1012
Cdd:TIGR00606 593 LAKLNKELASLEqnknhinneLESKEEQLSSyedklfdvcgsQDEESDLERLKEEIEKSSkqrAMLAGATAVysQFITQL 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1013 TKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEE 1092
Cdd:TIGR00606 673 TDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNK 752
|
570 580
....*....|....*....|...
gi 1317840703 1093 NVKLAEELGRTRDEVTSHQKLEE 1115
Cdd:TIGR00606 753 LQKVNRDIQRLKNDIEEQETLLG 775
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
352-1098 |
2.16e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHV-GEIEQELALARDGhdqhvlELEAKMDQLRTMVEAADREKVEllnql 430
Cdd:TIGR01612 625 LKKIIENNNAYIDELAKISPYQVPEHLKNKDKIySTIKSELSKIYED------DIDALYNELSSIVKENAIDNTE----- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 431 eeEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDlalraqevaelrrrlesskppgdvdmslsllQEISALQE 510
Cdd:TIGR01612 694 --DKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKN-------------------------------ELLDIIVE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 511 KLEAIHTDHQGEMTSLKEHFGAREeafqkeiKALHTATEKLSKENESL---RSKLDHANKENSDVIALWKSKLETAIASH 587
Cdd:TIGR01612 741 IKKHIHGEINKDLNKILEDFKNKE-------KELSNKINDYAKEKDELnkyKSKISEIKNHYNDQINIDNIKDEDAKQNY 813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 588 QQAMEELK---------------VSFSK-------------------GIGTDSAEFAELKTQI------ERLRlDYQHEI 627
Cdd:TIGR01612 814 DKSKEYIKtisikedeifkiineMKFMKddflnkvdkfinfennckeKIDSEHEQFAELTNKIkaeisdDKLN-DYEKKF 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 628 ESLQSKQDSERSAHAKEMETMQAklmkiIKEKEDSLEAVKARLDSAEDQHlvEMEDTLNKLQEAEIKV-KELEVLQAKYT 706
Cdd:TIGR01612 893 NDSKSLINEINKSIEEEYQNINT-----LKKVDEYIKICENTKESIEKFH--NKQNILKEILNKNIDTiKESNLIEKSYK 965
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 707 EQSE--VIGNFTSQLSAVKEklLDLDALRKANSE------------GKLELETLRQQLEGAEKQIKNLETErnaeSSKKE 772
Cdd:TIGR01612 966 DKFDntLIDKINELDKAFKD--ASLNDYEAKNNElikyfndlkanlGKNKENMLYHQFDEKEKATNDIEQK----IEDAN 1039
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 773 KFASTSEEAV--SAQTRMQDTVNKLHQKEEQFNvlSSELEKLRENLTDMEaKFKEK------DD--REDQLVKAKE--KL 840
Cdd:TIGR01612 1040 KNIPNIEIAIhtSIYNIIDEIEKEIGKNIELLN--KEILEEAEINITNFN-EIKEKlkhynfDDfgKEENIKYADEinKI 1116
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 841 ENDIAEIMKMSGDNSSQLTKMNDElrlKERSVEELQLKLTK---------ANENASFLQKSIGEVTLKAEQsqqqaaRKH 911
Cdd:TIGR01612 1117 KDDIKNLDQKIDHHIKALEEIKKK---SENYIDEIKAQINDledvadkaiSNDDPEEIEKKIENIVTKIDK------KKN 1187
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 912 EEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASS--------ETKTKHEEILQNLQKMLADTEDKLKAAQEANR--- 980
Cdd:TIGR01612 1188 IYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGklflekidEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENemg 1267
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 981 ---DLMQDMEELKTQADKAKAAQTA------------EDAMQIMEQMTKE------KTETLASLEDTKQTNARLQNELDT 1039
Cdd:TIGR01612 1268 iemDIKAEMETFNISHDDDKDHHIIskkhdenisdirEKSLKIIEDFSEEsdindiKKELQKNLLDAQKHNSDINLYLNE 1347
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317840703 1040 LkeNNLKTVEELNKSKELLSvenqKMEEFKKEIETLKQ---AAAQKSQQLSALQEENVKLAE 1098
Cdd:TIGR01612 1348 I--ANIYNILKLNKIKKIID----EVKEYTKEIEENNKnikDELDKSEKLIKKIKDDINLEE 1403
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
404-1067 |
2.32e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 404 ELEAKMDQLRTMVEAADRekvelLNQLEEEKRKVEDLQFRVEEESITKgDLEVATVSEKSRIMELEKDLALRAQEVAELR 483
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDR-----ILELDQELRKAERELSKAEKNSLTE-TLKKEVKSLQNEKADLDRKLRKLDQEMEQLN 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 484 RRLESSKppgdvdMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAReeafqkeiKALHTATEKLSKENESLRSKLD 563
Cdd:TIGR00606 529 HHTTTRT------QMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK--------KQLEDWLHSKSKEINQTRDRLA 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 564 HANKENSDVialwkSKLETAIASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYqheieslqsKQDSERSAHAK 643
Cdd:TIGR00606 595 KLNKELASL-----EQNKNHINNELESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEI---------EKSSKQRAMLA 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 644 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELE-VLQAKYTEQSEVIGNFTSQLSAV 722
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTEsELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 723 KEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETErnaesskkEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 802
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE--------EESAKVCLTDVTIMERFQMELKDVERKIAQQ 811
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 803 nVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMS-----------------GDNSSQLTKMNDEL 865
Cdd:TIGR00606 812 -AAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIqhlksktnelkseklqiGTNLQRRQQFEEQL 890
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 866 RLKERSVEELQLKLTKANENASFLQKSIGevtlKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEK 945
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLE----KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 946 ASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaedaMQIMEQMTKEKTETLAS--- 1022
Cdd:TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT----LRKRENELKEVEEELKQhlk 1042
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1317840703 1023 ------LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE 1067
Cdd:TIGR00606 1043 emgqmqVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
622-1137 |
2.48e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 622 DYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKaRLDSAEDQHLveMEDTLNKLQEAEIKVKELevl 701
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKK-RFSLLKKETI--YLQSAQRVELAERQLQEL--- 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 702 qakyteQSEVignftSQLSAVKEKLLDLD--ALRKANSEGKLELETLRQQLEGAEKQIKNLETernaesskkekfaSTSE 779
Cdd:COG5022 888 ------KIDV-----KSISSLKLVNLELEseIIELKKSLSSDLIENLEFKTELIARLKKLLNN-------------IDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 780 EAVSAQTRMQDTVNKLHQKEeqfnvlsSELEKLRENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLT 859
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVE-------SKLKETSEEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQ 1012
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 860 KMNDELRLKERSVEELQLKLTKANENASFL------QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSY 933
Cdd:COG5022 1013 ESTKQLKELPVEVAELQSASKIISSESTELsilkplQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTE 1090
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 934 NQCQDLKAKYEKASSETKTKHEEILQNLqkmladtedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--Q 1011
Cdd:COG5022 1091 NLLKTINVKDLEVTNRNLVKPANVLQFI------------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQ 1153
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1012 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQ 1090
Cdd:COG5022 1154 LELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVP 1233
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1317840703 1091 EENVKLAEELGRTRDEVTSHQKL--EEERSVLN--NQLLEMKKRLKKVYPR 1137
Cdd:COG5022 1234 TEYSTSLKGFNNLNKKFDTPASMsnEKLLSLLNsiDNLLSSYKLEEEVLPA 1284
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
386-814 |
2.55e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 386 EIEQELALARDGHDQHvLELEAKMDQLRTMVEAADREKVELLNQLEEeKRKVEDLQFRVEEESITKGDLEvatvSEKSRI 465
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAELEELREELEK-LEKLLQLLPLYQELEALEAELA----ELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 466 MELEKdlalRAQEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 545
Cdd:COG4717 149 EELEE----RLEELRELEEELEE------------LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 546 TATEKLSKENESLRSKLD-------HANKENSDVIALWKSKLETAIASHQQAMEELKVSFSK---------GIGTDSAEF 609
Cdd:COG4717 213 EELEEAQEELEELEEELEqleneleAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 610 AELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH----LVEMEDTL 685
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeelqLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 686 NKLQeAEIKVKELEVLQAKYTEQSEVIgNFTSQLSAVKEKLLDLDALRKANSEG------KLELETLRQQLEGAEKQIKN 759
Cdd:COG4717 373 AALL-AEAGVEDEEELRAALEQAEEYQ-ELKEELEELEEQLEELLGELEELLEAldeeelEEELEELEEELEELEEELEE 450
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 760 LETERNAESSKKEKfASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRE 814
Cdd:COG4717 451 LREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
785-1132 |
3.33e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 785 QTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEA------KFKEKDDREDQL-----VKAKEKLENDIAEIMKMSGD 853
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERqaekaeRYKELKAELRELelallVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 854 NSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEkkeleekllelekkmetsy 933
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL------------------- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 934 nqcQDLKAKYEKAssetktkhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQtaEDAMQIMEQMT 1013
Cdd:TIGR02168 312 ---ANLERQLEEL--------EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL--EELESRLEELE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1014 KEKTETLASLEDTKQTNARLQNELdtlkENNLKTVEELNKSKELLSVENQK--MEEFKKEIETLKQAAAQKSQQLSALQE 1091
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEI----ERLEARLERLEDRRERLQQEIEEllKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1317840703 1092 ENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRLK 1132
Cdd:TIGR02168 455 ELERLEEALEELREEL---EEAEQALDAAERELAQLQARLD 492
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
778-1133 |
3.75e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 778 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 844
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 845 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 922
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 923 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDKlkAAQEANRDLMQDMEELKTQADKA 996
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSRS--EAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 997 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKM 1065
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSE-------SVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 1066 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGR---TRDEVTSH--QKLEEERS--VLNNQLLEMKKRLKK 1133
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSGEefeDSQDVTEYmqQLLEREREltVERDELAARKQALDE 659
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-683 |
6.70e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 331 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEA 407
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-----------NVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 408 KMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSekSRIMELEKDLALRaqevaELRRRLE 487
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE--ARLREIEQKLNRL-----TLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 488 SSKPPGDVDMSLSLLQEISALQEKLEAIHTDhqgemtslKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 567
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGK--------KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 568 EnsdvialwKSKLETAIASHQQAMEELKVsfskgigTDSAEFAELKtQIERLRLDYQHEIESLQSKQD--SERSAHAKEM 645
Cdd:TIGR02169 904 K--------IEELEAQIEKKRKRLSELKA-------KLEALEEELS-EIEDPKGEDEEIPEEELSLEDvqAELQRVEEEI 967
|
330 340 350
....*....|....*....|....*....|....*...
gi 1317840703 646 ETMQAKLMKIIKEKEDsleaVKARLDSAEDQHLVEMED 683
Cdd:TIGR02169 968 RALEPVNMLAIQEYEE----VLKRLDELKEKRAKLEEE 1001
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
771-879 |
7.62e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.69 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 771 KEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKAKEKLENDI-- 844
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEARSEERREIrk 463
|
90 100 110
....*....|....*....|....*....|....*.
gi 1317840703 845 -AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 879
Cdd:COG2433 464 dREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
459-870 |
9.44e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 9.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 459 VSEKSRIMELEKDLAlraqEVAELRRRLESskppgDVDMS---LSLLQEISALQEKLEAIHTDhQGEMTS-LKEHFGARE 534
Cdd:COG3096 302 AEEQYRLVEMARELE----ELSARESDLEQ-----DYQAAsdhLNLVQTALRQQEKIERYQED-LEELTErLEEQEEVVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 535 EAfQKEIKALHTATEKLSKENESLRSKLdhankensdviALWKSKLET----AIASHQ--QAMEELKVSFskGIGTDSAE 608
Cdd:COG3096 372 EA-AEQLAEAEARLEAAEEEVDSLKSQL-----------ADYQQALDVqqtrAIQYQQavQALEKARALC--GLPDLTPE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 609 FAELKTQIERLRLDYQHEiESLQSKQD-SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKAR---LDSAEDQHLVEMEDT 684
Cdd:COG3096 438 NAEDYLAAFRAKEQQATE-EVLELEQKlSVADAARRQFEKAYELVCKIAGEVERSQAWQTARellRRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 685 LnklqeaEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRkanSEGKLELETLRQQLEGAEKQIKNLETER 764
Cdd:COG3096 517 L------RAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELL---AELEAQLEELEEQAAEAVEQRSELRQQL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 765 NAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKfkekddrEDQLVKAKEKLENDI 844
Cdd:COG3096 588 EQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVE-------RDELAARKQALESQI 660
|
410 420
....*....|....*....|....*.
gi 1317840703 845 AEIMKMSGDNSSQLtkmndeLRLKER 870
Cdd:COG3096 661 ERLSQPGGAEDPRL------LALAER 680
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
357-1131 |
9.95e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 9.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 357 KEKQQHIEQLLAERDLERAEVAKATSHVGE---IEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQEqlqAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 434 KRK----VEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRrlESSKPPGDVDMSLSLLQEISALQ 509
Cdd:pfam01576 98 KKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSK--ERKLLEERISEFTSNLAEEEEKA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 510 EKLEAIHTDHQGEMTSLkehfgarEEAFQKEikalhtatEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQ 589
Cdd:pfam01576 176 KSLSKLKNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 590 AMEELKVSFSKgigtdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMET---MQAKLMKIIKEKEDSLE-- 664
Cdd:pfam01576 241 KEEELQAALAR-----LEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdLGEELEALKTELEDTLDtt 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 665 AVKARLDSAEDQHLVEMEDTLnklqEAEIKVKELEVLQAKyTEQSEVIGNFTSQLSAVKEKLLDLD----ALRKANSEGK 740
Cdd:pfam01576 316 AAQQELRSKREQEVTELKKAL----EEETRSHEAQLQEMR-QKHTQALEELTEQLEQAKRNKANLEkakqALESENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 741 LELETLRQQLEGAEKQIKNLET---ERNAESSKKEKFASTSEEAVS-AQTRMQDTVNKLHQKEEQFNVLSSELEKLRENL 816
Cdd:pfam01576 391 AELRTLQQAKQDSEHKRKKLEGqlqELQARLSESERQRAELAEKLSkLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 817 TDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMsgdnssqltkmndeLRLKERSVEELQLKLTKANENASFLQKSIGEV 896
Cdd:pfam01576 471 QDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQ--------------LEEEEEAKRNVERQLSTLQAQLSDMKKKLEED 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 897 TLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEKASSETKTKHEEI------LQNLQKMLADTED 970
Cdd:pfam01576 537 AGTLEALEEGKKR---------------LQRELEALTQQLEEKAAAYDKLEKTKNRLQQELddllvdLDHQRQLVSNLEK 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 971 KLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQImeQMTKEKTETLASLEDTKQTNARLQNELDTL---KENNLKT 1047
Cdd:pfam01576 602 KQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRAL--SLARALEEALEAKEELERTNKQLRAEMEDLvssKDDVGKN 679
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1048 VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELgRTRDEvtshqKLEEERSVLNNQLLE 1126
Cdd:pfam01576 680 VHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVnMQALKAQFERDL-QARDE-----QGEEKRRQLVKQVRE 753
|
....*
gi 1317840703 1127 MKKRL 1131
Cdd:pfam01576 754 LEAEL 758
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
404-563 |
1.26e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVE--EESITKGDLEVATVSEK-----SRIMEL--EKDLAL 474
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEdlEKEIKRLELEIEEVEARikkyeEQLGNVrnNKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 475 RAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIhtdhQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKE 554
Cdd:COG1579 94 LQKEIESLKRRISDLE-----DEILELMERIEELEEELAEL----EAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
....*....
gi 1317840703 555 NESLRSKLD 563
Cdd:COG1579 165 REELAAKIP 173
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
958-1132 |
1.51e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 1026
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1027 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1097
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....*
gi 1317840703 1098 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKRLK 1132
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRLE 375
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
535-773 |
1.86e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 535 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKsKLETAIASHQQAMEELKvsfskgigtdsAEFAELKT 614
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELE-----------KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 615 QIERLRLDYQHEIESLQ--SKQD-------SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTL 685
Cdd:COG4942 98 ELEAQKEELAELLRALYrlGRQPplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 686 NKLQEAEIKVKELEVLQAkytEQSEVIGNFTSQLSAVKEKLLDLDAlrkansegklELETLRQQLEGAEKQIKNLETERN 765
Cdd:COG4942 178 ALLAELEEERAALEALKA---ERQKLLARLEKELAELAAELAELQQ----------EAEELEALIARLEAEAAAAAERTP 244
|
....*...
gi 1317840703 766 AESSKKEK 773
Cdd:COG4942 245 AAGFAALK 252
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
644-825 |
1.92e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 644 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNftsqlsaVK 723
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTEL----EDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-------NK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 724 EklldLDALRKansegklELETLRQQLEGAEKQIKNLETERNAessKKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFN 803
Cdd:COG1579 90 E----YEALQK-------EIESLKRRISDLEDEILELMERIEE---LEEELAELEAELAELEAELEEKKAEL---DEELA 152
|
170 180
....*....|....*....|..
gi 1317840703 804 VLSSELEKLRENLTDMEAKFKE 825
Cdd:COG1579 153 ELEAELEELEAEREELAAKIPP 174
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
626-849 |
1.94e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 626 EIESLQSKQDsersaHAKEMETMQAKLMKIIKEKEDsleAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKY 705
Cdd:PHA02562 182 QIQTLDMKID-----HIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 706 TEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEG---KLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAV 782
Cdd:PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1317840703 783 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 849
Cdd:PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
958-1140 |
1.95e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAE----DAMQIMEQMTkEKTETLASLEDTKQTNARL 1033
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeiDVASAEREIA-ELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1034 QNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV-KLAEELGRTRDEVTSHQK 1112
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLeERFAAALGDAVERELREN 770
|
170 180
....*....|....*....|....*...
gi 1317840703 1113 LEEERSVLNNQLLEMKKRLKKVYPRYNK 1140
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
350-799 |
1.98e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATShvgEIEQelalardgHDQHVLELEAKMDQLRTMVEAADREKV----- 424
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK---ELEQ--------NNKKIKELEKQLNQLKSEISDLNNQKEqdwnk 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 425 ELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGD--VDMSLSLL 502
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsyKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 503 QEISALQEKLEAIHTDHQgemtslkehfgareeAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLET 582
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQ---------------QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 583 AIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLrldyQHEIESlQSKQDSERSAHAKEMETMQAKLMKII---KEK 659
Cdd:TIGR04523 455 IIKNLDNTRESLE----TQLKVLSRSINKIKQNLEQK----QKELKS-KEKELKKLNEEKKELEEKVKDLTKKIsslKEK 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 660 EDSLEAVKARLDSaedqHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEG 739
Cdd:TIGR04523 526 IEKLESEKKEKES----KISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 740 KLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRMQDTVNKLHQKE 799
Cdd:TIGR04523 602 IKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKW 661
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
958-1133 |
2.02e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1034
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1035 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQE--ENVKL-----AEELGRTRDEV 1107
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAllAALGLplpasAEEFAALRAEA 389
|
170 180
....*....|....*....|....*..
gi 1317840703 1108 TSH-QKLEEERSVLNNQLLEMKKRLKK 1133
Cdd:COG4913 390 AALlEALEEELEALEEALAEAEAALRD 416
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
637-844 |
2.14e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.94 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 637 ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAE---DQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVig 713
Cdd:pfam05667 311 EAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLEssiQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKV-- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 714 nftsqlsavKEKLLDLdalrkansegkleletlrqqLEGAEKQIKNLETERNAESSKKEKFASTSEEA------------ 781
Cdd:pfam05667 389 ---------KKKTLDL--------------------LPDAEENIAKLQALVDASAQRLVELAGQWEKHrvplieeyralk 439
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1317840703 782 VSAQTRMQDTVNKLhqkeeqfnvlsSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDI 844
Cdd:pfam05667 440 EAKSNKEDESQRKL-----------EEIKELREKIKEVAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1029-1131 |
2.15e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1029 TNARLQNELDTLKENNLKTVEE------LNKSKELLsvenQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELG- 1101
Cdd:PRK11281 37 TEADVQAQLDALNKQKLLEAEDklvqqdLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDe 112
|
90 100 110
....*....|....*....|....*....|..
gi 1317840703 1102 --RTRDEVTSHQKLEEERSVLNNQLLEMKKRL 1131
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQNAQNDL 144
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
740-874 |
2.59e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 740 KLELETLRQQLEGAEKQIKNLETERNAesSKKEKFASTSEEAVSaqtrmqdtvnklhqkeeqfnvLSSELEKLRENLTDM 819
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQLEIEKEA--LKKEQDEASFERLAE---------------------LRDELAELEEELEAL 459
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1317840703 820 EAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEE 874
Cdd:COG0542 460 KARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVTE 514
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
955-1135 |
2.73e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.75 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 955 EEILQNLQKMLA--------DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKE---------KT 1017
Cdd:PRK04778 233 QELKAGYRELVEegyhldhlDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREvkarkyvekNS 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1018 ETLAS-LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELlsvENQkMEEFKKEIETLKQAAAQKSQQLSALQ---EEN 1093
Cdd:PRK04778 313 DTLPDfLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQL---EKQ-LESLEKQYDEITERIAEQEIAYSELQeelEEI 388
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1317840703 1094 VKLAEELGRTRDEVTSH-QKLEEERSVLNNQLLEMKKRLKKVY 1135
Cdd:PRK04778 389 LKQLEEIEKEQEKLSEMlQGLRKDELEAREKLERYRNKLHEIK 431
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
867-1100 |
3.23e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 867 LKERSVEELQLKLTKAN-ENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEK 945
Cdd:PRK11281 48 LNKQKLLEAEDKLVQQDlEQTLALLDKIDRQKEETEQLKQQLAQ---------------APAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 946 ASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAedAMQIMEQMTKEKTETLASLED 1025
Cdd:PRK11281 113 ETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA--NSQRLQQIRNLLKGGKVGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1026 TKQT-----NARL-----QNELD-TLKENNLKTVEELNKSKELLSVENQKMEEF----------KKEIETLKQAAAQKSQ 1084
Cdd:PRK11281 189 LRPSqrvllQAEQallnaQNDLQrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQlqllqeainsKRLTLSEKTVQEAQSQ 268
|
250
....*....|....*.
gi 1317840703 1085 QLSALQEENVKLAEEL 1100
Cdd:PRK11281 269 DEAARIQANPLVAQEL 284
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
350-732 |
3.30e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 350 TALQEALKEKQQHIEQLLAERDleraevaKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQ 429
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQE-------AANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 430 LEEEKRKVEDLqfrveeeSITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgDVDMSLSLLQEISALQ 509
Cdd:pfam07888 103 YKELSASSEEL-------SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKE--RAKKAGAQRKEEEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 510 EKLEAIHTDHQGEMTSL-KEHFGAREEAFQKEIKALhtateKLSKENESLRSKLDHANKENSDVIALWK--SKLETAIAS 586
Cdd:pfam07888 174 KQLQAKLQQTEEELRSLsKEFQELRNSLAQRDTQVL-----QLQDTITTLTQKLTTAHRKEAENEALLEelRSLQERLNA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 587 HQQAMEELKVSFSKGIGTDSAEFAEL-KTQIERLRLDYQHEIESLQSKQDseRSAHAKEMETMQ----------AKLMKI 655
Cdd:pfam07888 249 SERKVEGLGEELSSMAAQRDRTQAELhQARLQAAQLTLQLADASLALREG--RARWAQERETLQqsaeadkdriEKLSAE 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 656 IKEKEDSL-------EAVKARLDSAEDQHLVEMEDTLNKLQE--AEIKV--KELEVLQAKYTEQSEVIGNFTSQLSAVKE 724
Cdd:pfam07888 327 LQRLEERLqeermerEKLEVELGREKDCNRVQLSESRRELQElkASLRVaqKEKEQLQAEKQELLEYIRQLEQRLETVAD 406
|
....*...
gi 1317840703 725 KLLDLDAL 732
Cdd:pfam07888 407 AKWSEAAL 414
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
404-1134 |
3.37e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEE--ESITKGDLEVATVSE-KSRIMELEKDLALRAQEV- 479
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDlfDKYLEIDDEIIYINKlKLELKEKIKNISDKNEYIk 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 480 --AELRRRLESSKPPGDVDMSLSLLQEISALQEKlEAIHTDHQGEMTSLkehfgareeaFQKEIKALHTATEKLSKENes 557
Cdd:TIGR01612 621 kaIDLKKIIENNNAYIDELAKISPYQVPEHLKNK-DKIYSTIKSELSKI----------YEDDIDALYNELSSIVKEN-- 687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 558 lrsklDHANKENsdvialwKSKLEtaiashqqameelkvsfskgigtdsaefaELKTQIERlrldyqhEIESLQSKQDSE 637
Cdd:TIGR01612 688 -----AIDNTED-------KAKLD-----------------------------DLKSKIDK-------EYDKIQNMETAT 719
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 638 RSAHAKEMETMQAKLMKIIKEKEDSLEAvkarldsaedqhlvEMEDTLNK-LQEAEIKVKELEVLQAKYTEQSEVIGNFT 716
Cdd:TIGR01612 720 VELHLSNIENKKNELLDIIVEIKKHIHG--------------EINKDLNKiLEDFKNKEKELSNKINDYAKEKDELNKYK 785
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 717 SQLSAVKEKLLDLDALRKANSegklelETLRQQLEGAEKQIKNLETERNaESSK--------KEKFASTSEEAVSAQTRM 788
Cdd:TIGR01612 786 SKISEIKNHYNDQINIDNIKD------EDAKQNYDKSKEYIKTISIKED-EIFKiinemkfmKDDFLNKVDKFINFENNC 858
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 789 QDTVNKLHqkeEQFNVLSSEL--EKLRENLTDMEAKFKEkddredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELR 866
Cdd:TIGR01612 859 KEKIDSEH---EQFAELTNKIkaEISDDKLNDYEKKFND-----------SKSLINEINKSIEEEYQNINTLKKVDEYIK 924
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 867 LKERSVEELQLKLTKANENASFLQKSIGevTLKAEQSqqqaarkheeekkeleekllelekkMETSYnqcqdlKAKYEKA 946
Cdd:TIGR01612 925 ICENTKESIEKFHNKQNILKEILNKNID--TIKESNL-------------------------IEKSY------KDKFDNT 971
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 947 SSETKTKHEEILQNLQkmLADTEDKlkaaqeaNRDLMQDMEELKTQADKAKAA------QTAEDAMQIMEQMTKEKTETL 1020
Cdd:TIGR01612 972 LIDKINELDKAFKDAS--LNDYEAK-------NNELIKYFNDLKANLGKNKENmlyhqfDEKEKATNDIEQKIEDANKNI 1042
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1021 ASLEDTKQTNarLQNELDTLKENNLKTVEELNksKELLSVENQKMEEFKKEIETLKQAAAQksqqlSALQEENVKLAEEL 1100
Cdd:TIGR01612 1043 PNIEIAIHTS--IYNIIDEIEKEIGKNIELLN--KEILEEAEINITNFNEIKEKLKHYNFD-----DFGKEENIKYADEI 1113
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1317840703 1101 GRTRDEV-TSHQK-------LEEERSVLNNQLLEMKKRLKKV 1134
Cdd:TIGR01612 1114 NKIKDDIkNLDQKidhhikaLEEIKKKSENYIDEIKAQINDL 1155
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
747-866 |
3.60e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 747 RQQLEGAEKQIKNL--ETERNAESSKKEKFASTSEEAVSAQTRMQDTV-----------NKLHQKEEQFNVLSSELEKLR 813
Cdd:PRK12704 30 EAKIKEAEEEAKRIleEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerrnelqkleKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1317840703 814 ENLtdmEAKFKEKDDREDQLVKAKEKLENDIAE-------IMKMSGDNSSQ--LTKMNDELR 866
Cdd:PRK12704 110 EEL---EKKEKELEQKQQELEKKEEELEELIEEqlqelerISGLTAEEAKEilLEKVEEEAR 168
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
958-1133 |
3.73e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 958 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 1036
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1037 LDTLKennlKTVEELNksKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTshQKLEEE 1116
Cdd:COG1579 98 IESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE--AEREEL 168
|
170
....*....|....*..
gi 1317840703 1117 RSVLNNQLLEMKKRLKK 1133
Cdd:COG1579 169 AAKIPPELLALYERIRK 185
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-910 |
4.04e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDqlr 413
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 414 tmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLE---SSK 490
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQrsmSTQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 491 PPGDVDMSLS------LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKL---SKENESLRSK 561
Cdd:pfam05483 313 KALEEDLQIAtkticqLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLkiiTMELQKKSSE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 562 LDHANK---------ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIG---TDSAEFAELKTQIERLRLDYQHEIES 629
Cdd:pfam05483 393 LEEMTKfknnkevelEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFllqAREKEIHDLEIQLTAIKTSEEHYLKE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 630 LQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlvemEDTLNKLQEAEIKVKELEVLQAKYTeqs 709
Cdd:pfam05483 473 VEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ-----EDIINCKKQEERMLKQIENLEEKEM--- 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 710 evigNFTSQLSAVKEKLLDL-DALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAVSAQTRM 788
Cdd:pfam05483 545 ----NLRDELESVREEFIQKgDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKAL 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 789 QdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE--LR 866
Cdd:pfam05483 621 K---KKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEidKR 697
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1317840703 867 LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 910
Cdd:pfam05483 698 CQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAK 741
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
955-1117 |
4.25e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 955 EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQImEQMTKEKTETLASLEDTKQTNARLQ 1034
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-EQLEREIERLERELEERERRRARLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 1035 NELDTL-----------KENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRT 1103
Cdd:COG4913 366 ALLAALglplpasaeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
170
....*....|....
gi 1317840703 1104 RDEVTSHQKLEEER 1117
Cdd:COG4913 446 RDALAEALGLDEAE 459
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
462-693 |
4.41e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 462 KSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMslsLLQEISALQEKLEAIhtdhQGEMTSLKehfgAREEAFQKEI 541
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEA----RAELAEAE----ARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 542 KALHTATEKLSkeneslrskldhankeNSDVIAlwksKLETAIASHQQAMEELKVSFskgiGTDSAEFAELKTQIERLRL 621
Cdd:COG3206 250 GSGPDALPELL----------------QSPVIQ----QLRAQLAELEAELAELSARY----TPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1317840703 622 DYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEI 693
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARL 379
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
744-1105 |
4.95e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 744 ETLRQQLEGAEKQIKNLETERNAESSKKEKfasTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKF 823
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREK---EKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 824 KEKDDREDQLVKAKEKLendiaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS 903
Cdd:pfam07888 104 KELSASSEELSEEKDAL-------LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 904 QqqaarkheeekkeleeklleleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLM 983
Cdd:pfam07888 177 Q----------------------AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 984 QDMEELKTQADKAKAAQTAEDAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELL 1058
Cdd:pfam07888 234 ALLEELRSLQERLNASERKVEGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQER 306
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1317840703 1059 SVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1105
Cdd:pfam07888 307 ETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
969-1095 |
5.52e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 969 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1044
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1317840703 1045 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1095
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK 156
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
662-908 |
5.61e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 662 SLEAVKARLDSAEDQhlvemedtlnKLQEAEIK--VKELEvlqakyteqsevignftsqlsavkEKLLDLDALRKAnseg 739
Cdd:PRK11281 37 TEADVQAQLDALNKQ----------KLLEAEDKlvQQDLE------------------------QTLALLDKIDRQ---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 740 KLELETLRQQLEGAEKQIKNLETE-----RNAESSKKEKFASTSEEAVsaQTRMQDTVNKLHQKEEQFNVLSSELEKLR- 813
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAElealkDDNDEETRETLSTLSLRQL--ESRLAQTLDQLQNAQNDLAEYNSQLVSLQt 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 814 ----------ENLTDMEA----KFKEKDDREDQLVKAKEKLENDIAEIMkMSGDNSSQLTKMNDELR-LKERSVEELQLK 878
Cdd:PRK11281 157 qperaqaalyANSQRLQQirnlLKGGKVGGKALRPSQRVLLQAEQALLN-AQNDLQRKSLEGNTQLQdLLQKQRDYLTAR 235
|
250 260 270
....*....|....*....|....*....|
gi 1317840703 879 LTKANENASFLQKSIGEVTLkaEQSQQQAA 908
Cdd:PRK11281 236 IQRLEHQLQLLQEAINSKRL--TLSEKTVQ 263
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
645-1100 |
7.14e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 40.59 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 645 METMQAKLMKIIKEKEDSLEAVKARLDsaEDQHLVEMEDTLNKLQEAEIKVKelevlqakYTEQSEVIGNFTSQLsavKE 724
Cdd:PTZ00440 398 SEYFISKYTNIISLSEHTLKAAEDVLK--ENSQKIADYALYSNLEIIEIKKK--------YDEKINELKKSINQL---KT 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 725 KLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKKEKFASTSEEAvsaqtrmqdtvNKLHQKEEQFNV 804
Cdd:PTZ00440 465 LISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNNF-----------KNIEDYYITIEG 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 805 LSSELEKLRENLTDMEAKFKEKDDREdqlvKAKEKLENDIAEIMKMSGDNSSQLTKM---NDELRLKERSVEELqlkltk 881
Cdd:PTZ00440 534 LKNEIEGLIELIKYYLQSIETLIKDE----KLKRSMKNDIKNKIKYIEENVDHIKDIislNDEIDNIIQQIEEL------ 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 882 ANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKTKHEEILQNL 961
Cdd:PTZ00440 604 INEALFNKEKFINEKNDLQEKVKYILNKFYKGDLQELLDELSHFLDDHKYLYHE-AKSKEDLQTLLNTSKNEYEKLEFMK 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 962 QKMLADTEDKLKAAqeanrdlMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLK 1041
Cdd:PTZ00440 683 SDNIDNIIKNLKKE-------LQNLLSLKENIIKKQLNNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVYKHQII 755
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1317840703 1042 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEEL 1100
Cdd:PTZ00440 756 NRKNEFILHLYENDKDLPDGKNTYEEFLQYKDTILNKENKISNDINILKENKKNNQDLL 814
|
|
| LXG |
pfam04740 |
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of ... |
642-825 |
7.94e-03 |
|
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.
Pssm-ID: 428100 [Multi-domain] Cd Length: 202 Bit Score: 39.15 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 642 AKEMETMQAKLMKIIKEKEDSLEAVKARLdsaedQHLVEMEDTLNKlqEAEIKVKE-LEVLQAKYTEQ-SEVIGNFTSQL 719
Cdd:pfam04740 5 VSELIEGIDQTISELKELRDQLEKVKKAI-----EGLANLEDSLKG--KGGEAIKNfYSELHLPFLDFlQDFIDEYIEFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 720 SAVKEKLLDLDAlrkaNSEGKLELETLRQQLEG----AEKQIKNLETERNAESSKKEKFAST---SEEAV-----SAQTR 787
Cdd:pfam04740 78 EQIKAALESFEP----SSNAFIDESFLEHELENglkkAKEKTEELTDEINSILASVSDIVSLpklSDSEVqdslqKAKKK 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1317840703 788 MQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKE 825
Cdd:pfam04740 154 VKDTIEKLYDFDQE---QTSELSELEADLQALKTYVSE 188
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
948-1087 |
8.62e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.56 E-value: 8.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 948 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 1022
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1317840703 1023 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1087
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
689-841 |
9.23e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.12 E-value: 9.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 689 QEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAEs 768
Cdd:pfam07111 63 QQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRE- 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 769 skKEKFASTSEEAVSAQTRMQdtvnklhqkEEQFNVLSSELEKLRENLTDMEAKF-----------KEKDDREDQLVKAK 837
Cdd:pfam07111 142 --LEEIQRLHQEQLSSLTQAH---------EEALSSLTSKAEGLEKSLNSLETKRageakqlaeaqKEAELLRKQLSKTQ 210
|
....
gi 1317840703 838 EKLE 841
Cdd:pfam07111 211 EELE 214
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
635-884 |
9.68e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 9.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 635 DSERSAHAKEMETMQAKLMKIikekEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEvlqakYTEQSEVIGn 714
Cdd:PLN03229 414 DPERKVNMKKREAVKTPVREL----EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLE-----YTEAVIAMG- 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 715 FTSQLSAVKEKLLdldalrKANSEGKLELETLRQQLEGAEKQI-KNLETERNAESSKKE-------KFASTSEEAVSAQT 786
Cdd:PLN03229 484 LQERLENLREEFS------KANSQDQLMHPVLMEKIEKLKDEFnKRLSRAPNYLSLKYKldmlnefSRAKALSEKKSKAE 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317840703 787 RMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEA-KFKEKDDR-EDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 864
Cdd:PLN03229 558 KLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGAsSGDELDDDlKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKD 637
|
250 260
....*....|....*....|
gi 1317840703 865 LrLKERSVEELQLKLTKANE 884
Cdd:PLN03229 638 T-AEQTPPPNLQEKIESLNE 656
|
|
| |
