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Conserved domains on  [gi|1220273977|ref|NP_001340795|]
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RE1-silencing transcription factor [Danio rerio]

Protein Classification

zf-H2C2_5 and zf-H2C2_2 domain-containing protein( domain architecture ID 11229165)

zf-H2C2_5 and zf-H2C2_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00121 super family cl31754
MAEBL; Provisional
 432-691 4.77e-08

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 4.77e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  432 AEQAKIMEEL---EDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKLKGKTAVKDT 508
Cdd:PTZ00121  1220 AEDAKKAEAVkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE 1299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  509 EETQTEDTRvNNKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQTQHTPQQNETQENRPEKENRSLTEIDNAK 588
Cdd:PTZ00121  1300 EKKKADEAK-KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  589 DCGKVQTKKPCKKQTKTLKVCGETQNVEEEEIMRQKAGKRKAD---NPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVME 665
Cdd:PTZ00121  1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458

                          250       260
                   ....*....|....*....|....*...
gi 1220273977  666 SESS--EANNASKPDDSIDESQNPPVAE 691
Cdd:PTZ00121  1459 AEEAkkKAEEAKKADEAKKKAEEAKKAD 1486
zf-H2C2_2 pfam13465
Zinc-finger double domain;
306-327 1.63e-05

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.36  E-value: 1.63e-05
                          10        20
                  ....*....|....*....|..
gi 1220273977 306 HLTRHMRTHSGERPFKCDNCSY 327
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGK 22
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
292-316 6.32e-05

C2H2-type zinc-finger domain;


:

Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 40.61  E-value: 6.32e-05
                          10        20
                  ....*....|....*....|....*
gi 1220273977 292 FQCIYCEYSSSQKTHLTRHMRTHSG 316
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
278-303 8.29e-05

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 8.29e-05
                          10        20
                  ....*....|....*....|....*.
gi 1220273977 278 NYIQHIRTHTGERPFQCIYCEYSSSQ 303
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
264-288 6.52e-04

C2H2-type zinc-finger domain;


:

Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 37.53  E-value: 6.52e-04
                          10        20
                  ....*....|....*....|....*
gi 1220273977 264 FTCSQCSYFSDRKNNYIQHIRTHTG 288
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
622-768 3.27e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


:

Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.93  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 622 RQKAGKRKADNPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVMESESSEANNAsKPDDSIDESQNPPVAESRPDVEPQSV 701
Cdd:COG3170   234 RARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVTAAAAAEEADA-LPEAAAELAERLAALEAQLAELQRLL 312

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1220273977 702 PDcpIEKAPAVEEVQRPLEVEISTAAPDAPEVDSGNEMPSPTDSDGAPGFTPTLPLQHKPADAEDDE 768
Cdd:COG3170   313 AL--KNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPAAAAPAPALDNPLLLAGLLRRRKAEADEVDP 377
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 432-691 4.77e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 4.77e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  432 AEQAKIMEEL---EDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKLKGKTAVKDT 508
Cdd:PTZ00121  1220 AEDAKKAEAVkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE 1299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  509 EETQTEDTRvNNKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQTQHTPQQNETQENRPEKENRSLTEIDNAK 588
Cdd:PTZ00121  1300 EKKKADEAK-KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  589 DCGKVQTKKPCKKQTKTLKVCGETQNVEEEEIMRQKAGKRKAD---NPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVME 665
Cdd:PTZ00121  1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458

                          250       260
                   ....*....|....*....|....*...
gi 1220273977  666 SESS--EANNASKPDDSIDESQNPPVAE 691
Cdd:PTZ00121  1459 AEEAkkKAEEAKKADEAKKKAEEAKKAD 1486
zf-H2C2_2 pfam13465
Zinc-finger double domain;
306-327 1.63e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.36  E-value: 1.63e-05
                          10        20
                  ....*....|....*....|..
gi 1220273977 306 HLTRHMRTHSGERPFKCDNCSY 327
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGK 22
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
292-316 6.32e-05

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 40.61  E-value: 6.32e-05
                          10        20
                  ....*....|....*....|....*
gi 1220273977 292 FQCIYCEYSSSQKTHLTRHMRTHSG 316
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
278-303 8.29e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 8.29e-05
                          10        20
                  ....*....|....*....|....*.
gi 1220273977 278 NYIQHIRTHTGERPFQCIYCEYSSSQ 303
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
264-288 6.52e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 37.53  E-value: 6.52e-04
                          10        20
                  ....*....|....*....|....*
gi 1220273977 264 FTCSQCSYFSDRKNNYIQHIRTHTG 288
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
DUF612 pfam04747
Protein of unknown function, DUF612; This family includes several uncharacterized proteins ...
 383-720 1.38e-03

Protein of unknown function, DUF612; This family includes several uncharacterized proteins from Caenorhabditis elegans.


Pssm-ID: 282585 [Multi-domain]  Cd Length: 511  Bit Score: 42.36  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 383 KYAASKKCNLQYHIKSRHPGCKDISMDVSKVRLRVKRSDGDDASPNKLTAEQAKIMEELEDAGPINLSIKKPSKLNAVVE 462
Cdd:pfam04747  75 KKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVK 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 463 TEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKL-KGKTAVKDTEETQTEDTRVNNKKETKKAEKSAEKALKSRQKK 541
Cdd:pfam04747 155 AEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPApEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASV 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 542 EKPVKDSSVQQQSddcEQTQHTPQQNETQENRPEKENRSLTEIDNAKDCGKVQTKKPC---KKQTKTLKVCGETQNVEEE 618
Cdd:pfam04747 235 EQVVEQPKVVTEE---PHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPAsenQKKNKKDKKKSESEKVVEE 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 619 EIMRQ--KAGKRKADNPAEPKQRIKrTKKKDSGKPTTSEANQTNPEVMESESSEANNASKPDDSIDESQNppvAESRPDV 696
Cdd:pfam04747 312 PVQAEapKSKKPTADDNMDFLDFVT-AKEEPKDEPAETPAAPVEEVVENVVENVVEKSTTPPATENKKKN---KKDKKKS 387

                         330       340
                  ....*....|....*....|....
gi 1220273977 697 EPQSVPDCPIEKAPAVEEVQRPLE 720
Cdd:pfam04747 388 ESEKVTEQPVESAPAPPQVEQVVE 411
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
 409-813 1.53e-03

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 42.31  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  409 DVSKVRLRVKRSDGDDASPNKLTAEQAKIMEELEDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSK 488
Cdd:COG5271    335 DEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTD 414

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  489 NEPKEKTAKKLKGKTAVKDTEETQTEDTRVNNKKETKKAEKSAEKALKSRQKKEkpvkDSSVQQQSDDCEQTQhtpqQNE 568
Cdd:COG5271    415 EEEEEADEDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEED----TESAEEDADGDEATD----EDD 486

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  569 TQENRPEKENRSLTEIDNAKDcgkvqtkkpckKQTKTLKVCGETQNVEEEEIMRQKAGKRKADNPAEPKQRIKRTKKKDS 648
Cdd:COG5271    487 ASDDGDEEEAEEDAEAEADSD-----------ELTAEETSADDGADTDAAADPEDSDEDALEDETEGEENAPGSDQDADE 555

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  649 GKPTTSEANQTNPEVMESESSEANNASKPDDSIDESQNPPVAESRPDVEPQSVPDCPIEKAPAVEEVQRPLEVEISTAAP 728
Cdd:COG5271    556 TDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAED 635

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  729 DAPEVDSGNEMPSPTDSDGAPGFTPTLPLQHKPAdaEDDEGIHSNDGGSDISDSASEGSYDSGLMAGAEKLPETPTEERD 808
Cdd:COG5271    636 EAAEPETDASEAADEDADAETEAEASADESEEEA--EDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEAD 713


                   ....*
gi 1220273977  809 ASAAR 813
Cdd:COG5271    714 AEEAD 718
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
622-768 3.27e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.93  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 622 RQKAGKRKADNPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVMESESSEANNAsKPDDSIDESQNPPVAESRPDVEPQSV 701
Cdd:COG3170   234 RARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVTAAAAAEEADA-LPEAAAELAERLAALEAQLAELQRLL 312

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1220273977 702 PDcpIEKAPAVEEVQRPLEVEISTAAPDAPEVDSGNEMPSPTDSDGAPGFTPTLPLQHKPADAEDDE 768
Cdd:COG3170   313 AL--KNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPAAAAPAPALDNPLLLAGLLRRRKAEADEVDP 377
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 432-691 4.77e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 4.77e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  432 AEQAKIMEEL---EDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKLKGKTAVKDT 508
Cdd:PTZ00121  1220 AEDAKKAEAVkkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE 1299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  509 EETQTEDTRvNNKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQTQHTPQQNETQENRPEKENRSLTEIDNAK 588
Cdd:PTZ00121  1300 EKKKADEAK-KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  589 DCGKVQTKKPCKKQTKTLKVCGETQNVEEEEIMRQKAGKRKAD---NPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVME 665
Cdd:PTZ00121  1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458

                          250       260
                   ....*....|....*....|....*...
gi 1220273977  666 SESS--EANNASKPDDSIDESQNPPVAE 691
Cdd:PTZ00121  1459 AEEAkkKAEEAKKADEAKKKAEEAKKAD 1486
PTZ00121 PTZ00121
MAEBL; Provisional
 415-725 4.57e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.99  E-value: 4.57e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  415 LRVKRSDGDDASPNKLTAEQAKimEELEDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEK 494
Cdd:PTZ00121  1475 AKKKAEEAKKADEAKKKAEEAK--KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  495 TAKKLKGKTAVKDTEETQTEDTRVNNKKETKKAEKSAEKA----------LKSRQKKEKPVKDSSVQQQSDDCEQTQHTP 564
Cdd:PTZ00121  1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieevmklyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  565 QQNETQENRPEKENRSLTEIDNAKDCGKVQTKKPCKKQTKTLKVCGETQNVEEEEIMRQKAGKRKadnpAEPKQRIKRTK 644
Cdd:PTZ00121  1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE----AEEAKKAEELK 1708

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  645 KKDSGKPTTSEANQTNPEV-----------MESESSEANNASKPDDSIDESQNPPVAESRPDVEPQSVPDCPIEKAPAVE 713
Cdd:PTZ00121  1709 KKEAEEKKKAEELKKAEEEnkikaeeakkeAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788

                          330
                   ....*....|..
gi 1220273977  714 EVQRPLEVEIST 725
Cdd:PTZ00121  1789 DEKRRMEVDKKI 1800
zf-H2C2_2 pfam13465
Zinc-finger double domain;
306-327 1.63e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.36  E-value: 1.63e-05
                          10        20
                  ....*....|....*....|..
gi 1220273977 306 HLTRHMRTHSGERPFKCDNCSY 327
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGK 22
PTZ00121 PTZ00121
MAEBL; Provisional
 429-679 2.19e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 2.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  429 KLTAEQAKIMEELEDAGPINLS--IKKPSKLNAVVETEKSS----------KKNMDGKANQPQPNEKKSLSKNEPKEKTA 496
Cdd:PTZ00121  1277 ARKADELKKAEEKKKADEAKKAeeKKKADEAKKKAEEAKKAdeakkkaeeaKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  497 KKLKGKTAVKDTEETQTEDTrvnnKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQTQHTPQQNETQENRPEK 576
Cdd:PTZ00121  1357 DEAEAAEEKAEAAEKKKEEA----KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  577 ENRSLTEIDNAKDCGKVQTKKPCKKQTKTLKVCGETQNvEEEEIMRQKAGKRKAD----NPAEPKQRIKRTKKKDSGKPT 652
Cdd:PTZ00121  1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKKAEEAKKADeakkKAEEAKKKADEAKKAAEAKKK 1511

                          250       260
                   ....*....|....*....|....*..
gi 1220273977  653 TSEANQTNPEVMESESSEANNASKPDD 679
Cdd:PTZ00121  1512 ADEAKKAEEAKKADEAKKAEEAKKADE 1538
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
292-316 6.32e-05

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 40.61  E-value: 6.32e-05
                          10        20
                  ....*....|....*....|....*
gi 1220273977 292 FQCIYCEYSSSQKTHLTRHMRTHSG 316
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
PTZ00121 PTZ00121
MAEBL; Provisional
 418-667 6.86e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.67  E-value: 6.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  418 KRSDGDDASPNKLTAEQAKI-MEELEDAGPINLSIKKPSKLNAVVETEKSSKKNMD---------GKANQPQPNEKKSLS 487
Cdd:PTZ00121  1366 AEAAEKKKEEAKKKADAAKKkAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADeakkkaeekKKADEAKKKAEEAKK 1445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  488 KNEPKEKTAKKLKGKTAVKDTEETQTEDTRVNNKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQTQhtpQQN 567
Cdd:PTZ00121  1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE---EAK 1522

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  568 ETQENRPEKENRSLTEIDNAKDcgkvqtkkpcKKQTKTLKVCGETQNVEE----EEIMRQKAGKRKADNPAEPKQRIKRT 643
Cdd:PTZ00121  1523 KADEAKKAEEAKKADEAKKAEE----------KKKADELKKAEELKKAEEkkkaEEAKKAEEDKNMALRKAEEAKKAEEA 1592

                          250       260
                   ....*....|....*....|....
gi 1220273977  644 KKKDSGKPTTSEANQTNPEVMESE 667
Cdd:PTZ00121  1593 RIEEVMKLYEEEKKMKAEEAKKAE 1616
zf-H2C2_2 pfam13465
Zinc-finger double domain;
278-303 8.29e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 8.29e-05
                          10        20
                  ....*....|....*....|....*.
gi 1220273977 278 NYIQHIRTHTGERPFQCIYCEYSSSQ 303
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
PTZ00372 PTZ00372
endonuclease 4-like protein; Provisional
 453-556 1.45e-04

endonuclease 4-like protein; Provisional


Pssm-ID: 240388  Cd Length: 413  Bit Score: 45.09  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 453 KPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSlSKNEPKEKT--AKKLKGKTAVKDTEETQTEDTRVNNKKETKKAEKS 530
Cdd:PTZ00372   10 SFFSGTTQKSKLQPISYIYSNVLVLSKEILSTF-SEEENKVATtsTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88

                          90       100
                  ....*....|....*....|....*.
gi 1220273977 531 AEKALKSRQKKEKPVKDSSVQQQSDD 556
Cdd:PTZ00372   89 TKLGFKTPKKSKKTKKKPPKPKPNED 114
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 433-684 2.08e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 45.04  E-value: 2.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  433 EQAKIMEELEDAGPINlsikKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKLKGKTAVKDTEET- 511
Cdd:PTZ00108  1155 EQRLKSKTKGKASKLR----KPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEe 1230

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  512 -QTEDTRVNNKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQT-QHTPQQNETQENRPEKENRSLTEIDNAKD 589
Cdd:PTZ00108  1231 qKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAvQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  590 cgkvqtKKPCKKQTKTLKVcgetqnveeeeimrQKAGKRKADNPAEPKQRIKRTKKKDSGKPTtseanqTNPEVMESESS 669
Cdd:PTZ00108  1311 ------KKRLEGSLAALKK--------------KKKSEKKTARKKKSKTRVKQASASQSSRLL------RRPRKKKSDSS 1364

                          250
                   ....*....|....*.
gi 1220273977  670 EANN-ASKPDDSIDES 684
Cdd:PTZ00108  1365 SEDDdDSEVDDSEDED 1380
PTZ00121 PTZ00121
MAEBL; Provisional
 432-647 2.26e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 2.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  432 AEQAKIMEELEDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKLKGKTAVKDTEET 511
Cdd:PTZ00121  1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  512 QTEDTRVNNKKETKKAEKSAEKALKSRQKKEKPVKDSSVQQQSDDCEQTQHTPQQNEtqENRPEKENRSLTEiDNAKDCG 591
Cdd:PTZ00121  1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE--EAKKADEAKKKAE-EAKKKAD 1500

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1220273977  592 KVQTKKPCKKQTKTLKVCGETQNVEEeeiMRQKAGKRKADN--PAEPKQRIKRTKKKD 647
Cdd:PTZ00121  1501 EAKKAAEAKKKADEAKKAEEAKKADE---AKKAEEAKKADEakKAEEKKKADELKKAE 1555
PRK10927 PRK10927
cell division protein FtsN;
396-622 4.14e-04

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 43.52  E-value: 4.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 396 IKSRHPGckdismdvskVRLRVKRSDGDDA-SPNKLTAEQAKIMEELEDAgpinlSIKKPSKLNAVVETEKSSKKNMDGK 474
Cdd:PRK10927   89 LESRQPG----------VRAPTEPSAGGEVkTPEQLTPEQRQLLEQMQAD-----MRQQPTQLVEVPWNEQTPEQRQQTL 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 475 ANQPQpneKKSLSKNEPKEKtakklkgktavkdteetQTEDTRVNNKKETKKAEKSaekalkSRQKKEKPVKDSSVQQQS 554
Cdd:PRK10927  154 QRQRQ---AQQLAEQQRLAQ-----------------QSRTTEQSWQQQTRTSQAA------PVQAQPRQSKPASTQQPY 207

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1220273977 555 DDCEQT-QHTPQQNETQENRPekenrslteIDNAKDCGKVQTKKpcKKQTKTLKVCGETQNVEEEEIMR 622
Cdd:PRK10927  208 QDLLQTpAHTTAQSKPQQAAP---------VTRAADAPKPTAEK--KDERRWMVQCGSFRGAEQAETVR 265
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
264-288 6.52e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 37.53  E-value: 6.52e-04
                          10        20
                  ....*....|....*....|....*
gi 1220273977 264 FTCSQCSYFSDRKNNYIQHIRTHTG 288
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
DUF612 pfam04747
Protein of unknown function, DUF612; This family includes several uncharacterized proteins ...
 383-720 1.38e-03

Protein of unknown function, DUF612; This family includes several uncharacterized proteins from Caenorhabditis elegans.


Pssm-ID: 282585 [Multi-domain]  Cd Length: 511  Bit Score: 42.36  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 383 KYAASKKCNLQYHIKSRHPGCKDISMDVSKVRLRVKRSDGDDASPNKLTAEQAKIMEELEDAGPINLSIKKPSKLNAVVE 462
Cdd:pfam04747  75 KKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVK 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 463 TEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKL-KGKTAVKDTEETQTEDTRVNNKKETKKAEKSAEKALKSRQKK 541
Cdd:pfam04747 155 AEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPApEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASV 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 542 EKPVKDSSVQQQSddcEQTQHTPQQNETQENRPEKENRSLTEIDNAKDCGKVQTKKPC---KKQTKTLKVCGETQNVEEE 618
Cdd:pfam04747 235 EQVVEQPKVVTEE---PHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPAsenQKKNKKDKKKSESEKVVEE 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 619 EIMRQ--KAGKRKADNPAEPKQRIKrTKKKDSGKPTTSEANQTNPEVMESESSEANNASKPDDSIDESQNppvAESRPDV 696
Cdd:pfam04747 312 PVQAEapKSKKPTADDNMDFLDFVT-AKEEPKDEPAETPAAPVEEVVENVVENVVEKSTTPPATENKKKN---KKDKKKS 387

                         330       340
                  ....*....|....*....|....
gi 1220273977 697 EPQSVPDCPIEKAPAVEEVQRPLE 720
Cdd:pfam04747 388 ESEKVTEQPVESAPAPPQVEQVVE 411
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
 409-813 1.53e-03

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 42.31  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  409 DVSKVRLRVKRSDGDDASPNKLTAEQAKIMEELEDAGPINLSIKKPSKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSK 488
Cdd:COG5271    335 DEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTD 414

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  489 NEPKEKTAKKLKGKTAVKDTEETQTEDTRVNNKKETKKAEKSAEKALKSRQKKEkpvkDSSVQQQSDDCEQTQhtpqQNE 568
Cdd:COG5271    415 EEEEEADEDASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEED----TESAEEDADGDEATD----EDD 486

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  569 TQENRPEKENRSLTEIDNAKDcgkvqtkkpckKQTKTLKVCGETQNVEEEEIMRQKAGKRKADNPAEPKQRIKRTKKKDS 648
Cdd:COG5271    487 ASDDGDEEEAEEDAEAEADSD-----------ELTAEETSADDGADTDAAADPEDSDEDALEDETEGEENAPGSDQDADE 555

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  649 GKPTTSEANQTNPEVMESESSEANNASKPDDSIDESQNPPVAESRPDVEPQSVPDCPIEKAPAVEEVQRPLEVEISTAAP 728
Cdd:COG5271    556 TDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAED 635

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  729 DAPEVDSGNEMPSPTDSDGAPGFTPTLPLQHKPAdaEDDEGIHSNDGGSDISDSASEGSYDSGLMAGAEKLPETPTEERD 808
Cdd:COG5271    636 EAAEPETDASEAADEDADAETEAEASADESEEEA--EDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEAD 713


                   ....*
gi 1220273977  809 ASAAR 813
Cdd:COG5271    714 AEEAD 718
PTZ00121 PTZ00121
MAEBL; Provisional
 408-683 2.74e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 2.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  408 MDVSKVRLRVKRSDGDDASPNKLTAEQAKIMEELEDAGPINLS-----IKKPSKLNAVVETEKSSKKNMDGKANQPQPNE 482
Cdd:PTZ00121  1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKkeaeeKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  483 KKSLSKNEPKEKTAKKLKGKT--AVKDTEETQTEDTRVNNKKETKKAEK----SAEKALKSRQKKEKPVKDSSVQQQSDD 556
Cdd:PTZ00121  1678 EEAKKAEEDEKKAAEALKKEAeeAKKAEELKKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  557 CEQTQHTPQQNETQENRPEKENRSLTEIDNAKDCGKVQTKKPCK--------------KQTKTLKVCGETQNVEEEEIMR 622
Cdd:PTZ00121  1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKdifdnfaniieggkEGNLVINDSKEMEDSAIKEVAD 1837

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977  623 QKAGKRkadNPAEPKQRIKRTKKKDSGKPTTSEAN----------------------QTNPEVMESESSEANNASKPDDS 680
Cdd:PTZ00121  1838 SKNMQL---EEADAFEKHKFNKNNENGEDGNKEADfnkekdlkeddeeeieeadeieKIDKDDIEREIPNNNMAGKNNDI 1914


                   ...
gi 1220273977  681 IDE 683
Cdd:PTZ00121  1915 IDD 1917
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
622-768 3.27e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 40.93  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 622 RQKAGKRKADNPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVMESESSEANNAsKPDDSIDESQNPPVAESRPDVEPQSV 701
Cdd:COG3170   234 RARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVTAAAAAEEADA-LPEAAAELAERLAALEAQLAELQRLL 312

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1220273977 702 PDcpIEKAPAVEEVQRPLEVEISTAAPDAPEVDSGNEMPSPTDSDGAPGFTPTLPLQHKPADAEDDE 768
Cdd:COG3170   313 AL--KNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPAAAAPAPALDNPLLLAGLLRRRKAEADEVDP 377
PRK08581 PRK08581
amidase domain-containing protein;
455-683 4.22e-03

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 40.54  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 455 SKLNAVVETEKSSKKNMDGKANQPQPNEKKSLSKNEPKEKTAKKLKGKTAVKDTEETQTE-------DTRVNNKKETKKA 527
Cdd:PRK08581   34 STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDfiyknlpQTNINQLLTKNKY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 528 E-------------------KSAEKALKSR--QKKEKPVKDSSVQQQSDDCEQTQHTPQQNETQENRPEKENRSLTEIDN 586
Cdd:PRK08581  114 DdnyslttliqnlfnlnsdiSDYEQPRNSEksTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNS 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220273977 587 AKDCGKVQTKKPCKKQTKTlkvcGETQNVEEEEIMRQKAGKRKADNPAEPKQRIKRTKKKDSGKPTTSEANQTNPEVmeS 666
Cdd:PRK08581  194 PKPTQPNQSNSQPASDDTA----NQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKTETSNTKNPQL--P 267

                         250
                  ....*....|....*..
gi 1220273977 667 ESSEANNASKPDDSIDE 683
Cdd:PRK08581  268 TQDELKHKSKPAQSFEN 284
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 292-314 9.44e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.20  E-value: 9.44e-03
                          10        20
                  ....*....|....*....|...
gi 1220273977 292 FQCIYCEYSSSQKTHLTRHMRTH 314
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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