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Conserved domains on  [gi|1217322622|ref|NP_001340563|]
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NEDD4-binding protein 2-like 1 isoform 12 [Homo sapiens]

Protein Classification

ATP-binding protein( domain architecture ID 12153064)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain may function as an ATPase; similar to NEDD4-binding protein 2-like 1/2 (N4BP2L1 and N4BP2L2), whose functions are not clear

Gene Ontology:  GO:0005524
PubMed:  15037234|18208389

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 44-130 7.31e-16

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


:

Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 69.65  E-value: 7.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  44 LYLLRGLPGSGKTTLARQLqHDFPRALIFSTDDFFFR----EDGAYEFNPDFLEEAHEWNQKRARKAMRNGIsPIIIDNT 119
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRL-LEELGAVRLSSDDERKRlfgeGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90
                  ....*....|.
gi 1217322622 120 NLHAWEMKPYA 130
Cdd:pfam13671  79 NLRRDERARLL 89
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 44-130 7.31e-16

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 69.65  E-value: 7.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  44 LYLLRGLPGSGKTTLARQLqHDFPRALIFSTDDFFFR----EDGAYEFNPDFLEEAHEWNQKRARKAMRNGIsPIIIDNT 119
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRL-LEELGAVRLSSDDERKRlfgeGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90
                  ....*....|.
gi 1217322622 120 NLHAWEMKPYA 130
Cdd:pfam13671  79 NLRRDERARLL 89
COG4639 COG4639
Predicted kinase [General function prediction only];
41-129 1.36e-14

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 66.39  E-value: 1.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  41 RKHLYLLRGLPGSGKTTLARQLqhdFPRALIFSTDDF---FFREDGAYEFNPDFLEEAHEwnqkRARKAMRNGIsPIIID 117
Cdd:COG4639     1 MLSLVVLIGLPGSGKSTFARRL---FAPTEVVSSDDIralLGGDENDQSAWGDVFQLAHE----IARARLRAGR-LTVVD 72

                          90
                  ....*....|..
gi 1217322622 118 NTNLHAWEMKPY 129
Cdd:COG4639    73 ATNLQREARRRL 84
pseT PHA02530
polynucleotide kinase; Provisional
 42-125 1.45e-07

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 49.25  E-value: 1.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  42 KHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFF-----REDGAYEFNPDFLEEAHEWNQKRARKAMRNGISpIII 116
Cdd:PHA02530    2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQslfghGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS-VII 80

                          90
                  ....*....|....
gi 1217322622 117 DNTNL-----HAWE 125
Cdd:PHA02530   81 SDTNLnperrRKWK 94
NRK1 cd02024
Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide ...
 47-82 4.27e-05

Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.


Pssm-ID: 238982 [Multi-domain]  Cd Length: 187  Bit Score: 41.54  E-value: 4.27e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1217322622  47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFRED 82
Cdd:cd02024     4 ISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPED 39
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 41-118 1.22e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.66  E-value: 1.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622   41 RKHLYLLRGLPGSGKTTL----ARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAM----RNGIS 112
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLaralARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALalarKLKPD 80


                   ....*.
gi 1217322622  113 PIIIDN 118
Cdd:smart00382  81 VLILDE 86
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 44-130 7.31e-16

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 69.65  E-value: 7.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  44 LYLLRGLPGSGKTTLARQLqHDFPRALIFSTDDFFFR----EDGAYEFNPDFLEEAHEWNQKRARKAMRNGIsPIIIDNT 119
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRL-LEELGAVRLSSDDERKRlfgeGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90
                  ....*....|.
gi 1217322622 120 NLHAWEMKPYA 130
Cdd:pfam13671  79 NLRRDERARLL 89
COG4639 COG4639
Predicted kinase [General function prediction only];
41-129 1.36e-14

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 66.39  E-value: 1.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  41 RKHLYLLRGLPGSGKTTLARQLqhdFPRALIFSTDDF---FFREDGAYEFNPDFLEEAHEwnqkRARKAMRNGIsPIIID 117
Cdd:COG4639     1 MLSLVVLIGLPGSGKSTFARRL---FAPTEVVSSDDIralLGGDENDQSAWGDVFQLAHE----IARARLRAGR-LTVVD 72

                          90
                  ....*....|..
gi 1217322622 118 NTNLHAWEMKPY 129
Cdd:COG4639    73 ATNLQREARRRL 84
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
44-125 3.41e-09

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 52.22  E-value: 3.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  44 LYLLRGLPGSGKTTLARQLQHDFPrALIFSTDDF---FFRED-GAYEFNPDFLEEAHEWNQKRARKAMRNGISpIIIDNT 119
Cdd:COG0645     1 LILVCGLPGSGKSTLARALAERLG-AVRLRSDVVrkrLFGAGlAPLERSPEATARTYARLLALARELLAAGRS-VILDAT 78


                  ....*.
gi 1217322622 120 NLHAWE 125
Cdd:COG0645    79 FLRRAQ 84
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
 44-135 1.59e-08

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 50.88  E-value: 1.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  44 LYLLRGLPGSGKTTLARQLQHDFPR----ALIFSTDDffFREDGAYEFNPD-----FLEEAHEwnqKRARKAMRNGISpI 114
Cdd:COG4088     6 LLILTGPPGSGKTTFAKALAQRLYAegiaVALLHSDD--FRRFLVNESFPKetyeeVVEDVRT---TTADNALDNGYS-V 79

                          90       100
                  ....*....|....*....|.
gi 1217322622 115 IIDNTNLHAWEMKPYAVMKKH 135
Cdd:COG4088    80 IVDGTFYYRSWQRDFRNLAKH 100
pseT PHA02530
polynucleotide kinase; Provisional
 42-125 1.45e-07

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 49.25  E-value: 1.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  42 KHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFF-----REDGAYEFNPDFLEEAHEWNQKRARKAMRNGISpIII 116
Cdd:PHA02530    2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQslfghGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS-VII 80

                          90
                  ....*....|....
gi 1217322622 117 DNTNL-----HAWE 125
Cdd:PHA02530   81 SDTNLnperrRKWK 94
Zeta_toxin pfam06414
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ...
 41-119 5.54e-06

Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.


Pssm-ID: 428926  Cd Length: 192  Bit Score: 43.89  E-value: 5.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  41 RKHLYLLRGLPGSGKTTLARQLQHDFPR---ALIFSTDDF--FFRE-DGAYEFNPD-----FLEEAHEWNQKRARKAMRN 109
Cdd:pfam06414  10 RPKAILLGGQPGAGKTELARALLDELGRqgnVVRIDPDDFreLHPHyRELQAADPKtaseyTQPDASRWVEKLLQHAIEN 89

                          90
                  ....*....|
gi 1217322622 110 GISpIIIDNT 119
Cdd:pfam06414  90 GYN-IILEGT 98
NRK1 cd02024
Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide ...
 47-82 4.27e-05

Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.


Pssm-ID: 238982 [Multi-domain]  Cd Length: 187  Bit Score: 41.54  E-value: 4.27e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1217322622  47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFRED 82
Cdd:cd02024     4 ISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPED 39
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 49-98 5.44e-05

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 41.36  E-value: 5.44e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1217322622  49 GLPGSGKTTLARQLQHDFP--RALIFSTDDFFF-REDGAYE--FNPDFLE-EAHEW 98
Cdd:COG0572    14 GPSGSGKTTFARRLAEQLGadKVVVISLDDYYKdREHLPLDerGKPNFDHpEAFDL 69
KaiC-like_N cd19488
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ...
 41-61 1.05e-04

N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.


Pssm-ID: 410896 [Multi-domain]  Cd Length: 225  Bit Score: 40.80  E-value: 1.05e-04
                          10        20
                  ....*....|....*....|.
gi 1217322622  41 RKHLYLLRGLPGSGKTTLARQ 61
Cdd:cd19488    18 PRRLYLVEGAPGTGKTTLALQ 38
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 41-118 1.22e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.66  E-value: 1.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622   41 RKHLYLLRGLPGSGKTTL----ARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAM----RNGIS 112
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLaralARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALalarKLKPD 80


                   ....*.
gi 1217322622  113 PIIIDN 118
Cdd:smart00382  81 VLILDE 86
COG4185 COG4185
Predicted ABC-type ATPase or kinase [General function prediction only];
41-112 3.16e-04

Predicted ABC-type ATPase or kinase [General function prediction only];


Pssm-ID: 443339  Cd Length: 197  Bit Score: 39.10  E-value: 3.16e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1217322622  41 RKHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDgaYEFNPDF-LEEAHEWNQKRARKAMRNGIS 112
Cdd:COG4185     3 MPRLYIIAGPNGAGKSTFARTILPEELGGLEFVNADLIARGL--SPFNPETaAYEAGRLALERREELLAAGRS 73
PRK06762 PRK06762
hypothetical protein; Provisional
 44-71 5.27e-04

hypothetical protein; Provisional


Pssm-ID: 235858  Cd Length: 166  Bit Score: 38.03  E-value: 5.27e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1217322622  44 LYLLRGLPGSGKTTLARQLQHDFPR--ALI 71
Cdd:PRK06762    4 LIIIRGNSGSGKTTIAKQLQERLGRgtLLV 33
AAA_24 pfam13479
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
 45-137 1.03e-03

AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.


Pssm-ID: 433243  Cd Length: 199  Bit Score: 37.69  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  45 YLLRGLPGSGKTTLARQlqhdFPRALIFSTDDFFFREDGA-------YEFNPDFLEEAHEwnqkrARKAMRNGISPIIID 117
Cdd:pfam13479   5 ILIYGPSGIGKTTFAKT----LPKPLFLDTEKGSKALDGDrfpdiviRDSWQDFLDAIDE-----LTAAELADYKTIVID 75

                          90       100
                  ....*....|....*....|
gi 1217322622 118 NTNlHAWEMKPYAVMKKHSW 137
Cdd:pfam13479  76 TVD-WLERLCLAYICKQNGK 94
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 41-62 1.77e-03

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 37.07  E-value: 1.77e-03
                          10        20
                  ....*....|....*....|..
gi 1217322622  41 RKHLyLLRGLPGSGKTTLARQL 62
Cdd:COG0714    31 GGHL-LLEGVPGVGKTTLAKAL 51
COG1373 COG1373
Predicted ATPase, AAA+ superfamily [General function prediction only];
46-117 2.79e-03

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440984 [Multi-domain]  Cd Length: 405  Bit Score: 36.85  E-value: 2.79e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1217322622  46 LLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREdgAYEFNPDFLEEAHewnqkrarKAMRNGISPIIID 117
Cdd:COG1373    24 VITGPRQVGKTTLLKQLAKELENILYINLDDPRLRA--LAEEDPDDLLEAL--------KELYPGKTYLFLD 85
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 45-117 3.78e-03

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 35.58  E-value: 3.78e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1217322622  45 YLLRGLPGSGKTTLAR----QLQHDFPRALIFSTDDFFFREDGAyefnpdFLEEAHEWNQKRARKAMRNGiSPIIID 117
Cdd:cd00009    22 LLLYGPPGTGKTTLARaianELFRPGAPFLYLNASDLLEGLVVA------ELFGHFLVRLLFELAEKAKP-GVLFID 91
PRK08233 PRK08233
hypothetical protein; Provisional
 49-79 4.71e-03

hypothetical protein; Provisional


Pssm-ID: 181310 [Multi-domain]  Cd Length: 182  Bit Score: 35.49  E-value: 4.71e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1217322622  49 GLPGSGKTTLARQLQHDFPRALIFSTDDFFF 79
Cdd:PRK08233   10 AVSGGGKTTLTERLTHKLKNSKALYFDRYDF 40
AAA_18 pfam13238
AAA domain;
46-122 5.21e-03

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 35.10  E-value: 5.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1217322622  46 LLRGLPGSGKTTLARQLQhdfpRALIFSTD--DFFFREDGAYEFNPDFLE--EAHEWNQKRARKAMRNGIS-----PIII 116
Cdd:pfam13238   2 LITGTPGVGKTTLAKELS----KRLGFGDNvrDLALENGLVLGDDPETREskRLDEDKLDRLLDLLEENAAleeggNLII 77


                  ....*.
gi 1217322622 117 DNTNLH 122
Cdd:pfam13238  78 DGHLAE 83
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 38-69 7.14e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 35.17  E-value: 7.14e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1217322622  38 HSFRKHLYLLRGLPGSGKTTLARQLQHDFPRA 69
Cdd:pfam13191  20 RSGRPPSVLLTGEAGTGKTTLLRELLRALERD 51
AAA_17 pfam13207
AAA domain;
49-81 9.00e-03

AAA domain;


Pssm-ID: 463810 [Multi-domain]  Cd Length: 136  Bit Score: 34.52  E-value: 9.00e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1217322622  49 GLPGSGKTTLARQLQH--DFPralIFSTDDFFFRE 81
Cdd:pfam13207   2 GVPGSGKTTQLKKLAEklGFP---HISAGDLLREE 33
RAD55 COG0467
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
40-95 9.64e-03

RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];


Pssm-ID: 440235 [Multi-domain]  Cd Length: 221  Bit Score: 34.89  E-value: 9.64e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1217322622  40 FRKHLYLLRGLPGSGKTTLARQ-----LQHDFpRALIFSTD---DFFFREDGAYEFNPDFLEEA 95
Cdd:COG0467    18 PRGSSTLLSGPPGTGKTTLALQflaegLRRGE-KGLYVSFEespEQLLRRAESLGLDLEEYIES 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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