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Conserved domains on  [gi|1214884392|ref|NP_001340314|]
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uncharacterized protein C16orf90 isoform c [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4644 super family cl21301
Domain of unknown function (DUF4644); This family of proteins is found in eukaryotes. Proteins ...
 1-86 4.69e-19

Domain of unknown function (DUF4644); This family of proteins is found in eukaryotes. Proteins in this family are typically between 143 and 191 amino acids in length.


The actual alignment was detected with superfamily member pfam15486:

Pssm-ID: 406048  Cd Length: 161  Bit Score: 76.20  E-value: 4.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214884392   1 MAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGALPQPSP----SRLRPKRSWGTW 76
Cdd:pfam15486  72 LMGGGCLPPPGGPAWLLLLPGTLGGPNSSCSALLEAQQPPDSLLNSTASSSSDDATGAPSSQPPppegGGRRPKRSWGSL 151

                          90
                  ....*....|
gi 1214884392  77 EEAMCPLCKR 86
Cdd:pfam15486 152 EEMCCPCCKR 161
 
Name Accession Description Interval E-value
DUF4644 pfam15486
Domain of unknown function (DUF4644); This family of proteins is found in eukaryotes. Proteins ...
 1-86 4.69e-19

Domain of unknown function (DUF4644); This family of proteins is found in eukaryotes. Proteins in this family are typically between 143 and 191 amino acids in length.


Pssm-ID: 406048  Cd Length: 161  Bit Score: 76.20  E-value: 4.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214884392   1 MAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGALPQPSP----SRLRPKRSWGTW 76
Cdd:pfam15486  72 LMGGGCLPPPGGPAWLLLLPGTLGGPNSSCSALLEAQQPPDSLLNSTASSSSDDATGAPSSQPPppegGGRRPKRSWGSL 151

                          90
                  ....*....|
gi 1214884392  77 EEAMCPLCKR 86
Cdd:pfam15486 152 EEMCCPCCKR 161
 
Name Accession Description Interval E-value
DUF4644 pfam15486
Domain of unknown function (DUF4644); This family of proteins is found in eukaryotes. Proteins ...
 1-86 4.69e-19

Domain of unknown function (DUF4644); This family of proteins is found in eukaryotes. Proteins in this family are typically between 143 and 191 amino acids in length.


Pssm-ID: 406048  Cd Length: 161  Bit Score: 76.20  E-value: 4.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1214884392   1 MAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGALPQPSP----SRLRPKRSWGTW 76
Cdd:pfam15486  72 LMGGGCLPPPGGPAWLLLLPGTLGGPNSSCSALLEAQQPPDSLLNSTASSSSDDATGAPSSQPPppegGGRRPKRSWGSL 151

                          90
                  ....*....|
gi 1214884392  77 EEAMCPLCKR 86
Cdd:pfam15486 152 EEMCCPCCKR 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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