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Conserved domains on  [gi|1208397273|ref|NP_001339591|]
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nucleobindin-2 isoform 4 preproprotein [Homo sapiens]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 11467523)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 295-371 2.61e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


:

Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.89  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208397273 295 RLRMREHVM---NETLDQQQffteEELKEYENiialQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKK 371
Cdd:COG3883   120 RLSALSKIAdadADLLEELK----ADKAELEA----KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEE 191
 
Name Accession Description Interval E-value
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 295-371 2.61e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.89  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208397273 295 RLRMREHVM---NETLDQQQffteEELKEYENiialQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKK 371
Cdd:COG3883   120 RLSALSKIAdadADLLEELK----ADKAELEA----KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEE 191
PRK12704 PRK12704
phosphodiesterase; Provisional
 259-370 4.24e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 4.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208397273 259 DGFLDEQELEALFTKElEKVYDPKNEEDDMVEMEEERLRMRehvmNETLDQQqfftEEELKEYENIIALQENELKKKADE 338
Cdd:PRK12704   41 KRILEEAKKEAEAIKK-EALLEAKEEIHKLRNEFEKELRER----RNELQKL----EKRLLQKEENLDRKLELLEKREEE 111

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1208397273 339 LQKQKEELQRQHDQLEAQKLEYHQVIQQMEQK 370
Cdd:PRK12704  112 LEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
 
Name Accession Description Interval E-value
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 295-371 2.61e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.89  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208397273 295 RLRMREHVM---NETLDQQQffteEELKEYENiialQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKK 371
Cdd:COG3883   120 RLSALSKIAdadADLLEELK----ADKAELEA----KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEE 191
PRK12704 PRK12704
phosphodiesterase; Provisional
 259-370 4.24e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 4.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1208397273 259 DGFLDEQELEALFTKElEKVYDPKNEEDDMVEMEEERLRMRehvmNETLDQQqfftEEELKEYENIIALQENELKKKADE 338
Cdd:PRK12704   41 KRILEEAKKEAEAIKK-EALLEAKEEIHKLRNEFEKELRER----RNELQKL----EKRLLQKEENLDRKLELLEKREEE 111

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1208397273 339 LQKQKEELQRQHDQLEAQKLEYHQVIQQMEQK 370
Cdd:PRK12704  112 LEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 315-386 2.69e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.43  E-value: 2.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1208397273 315 EEELKEYENIIALQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKLQQGIPPSGPAGELK 386
Cdd:COG3883   149 KAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
GIM5 COG1730
Prefoldin subunit 5 [Posttranslational modification, protein turnover, chaperones];
312-375 3.15e-03

Prefoldin subunit 5 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441336 [Multi-domain]  Cd Length: 145  Bit Score: 37.58  E-value: 3.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1208397273 312 FFTEEELKEYENIIALQENELKKKADELQKQKEELQRQHDQLEAQkleyhqvIQQMEQKKLQQG 375
Cdd:COG1730    87 VAVEKDLDEAIEYLEKRIKELEKALEKLEEELQELEEEYEELEQQ-------LQQLQQQAQQQQ 143
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 316-374 6.27e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.59  E-value: 6.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1208397273 316 EELKEYENIIALQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKLQQ 374
Cdd:COG4942   153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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