|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
158-822 |
2.73e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 2.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 158 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTILQKK 237
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 238 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQH 317
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 318 CKEDSERLMEqqgaLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ------AQ 391
Cdd:TIGR02168 435 LKELQAELEE----LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvKA 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 392 LRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEqlKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDL 471
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEGYEAAIEAALG--GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQG 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 472 YVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVtdlvnqqqtleeKMREDRDSLVERLHRQTAEYSAFKLENERLK 551
Cdd:TIGR02168 589 NDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV------------LVVDDLDNALELAKKLRPGYRIVTLDGDLVR 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 552 ASF--------------------APMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENK 611
Cdd:TIGR02168 657 PGGvitggsaktnssilerrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 612 ILKdemnKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKH 691
Cdd:TIGR02168 737 RLE----AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 692 QASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAiEDARRQVEQTKEH 771
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALAL 891
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1191704925 772 ALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQS---RLQDLKDRL 822
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGlevRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-824 |
1.21e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 233 ILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDL 312
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 313 LREQhcKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELlqeiqcekaqaktaselsksmesmrghlQAQL 392
Cdd:COG1196 311 RREL--EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA----------------------------EAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 393 RSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKgdrdKESLKKAIRAQKERAEKSEEYAEQLHVQLadkdly 472
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLEEELEELEEAL------ 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 473 vAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKA 552
Cdd:COG1196 431 -AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 553 SFAP-MEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRL-EADEVAAQLERCDKENKilkdemnkeieAARRQFQS 630
Cdd:COG1196 510 VKAAlLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVAAAAIEYLKAAK-----------AGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 631 QLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELER 710
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 711 KLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQL 790
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1191704925 791 SRTKTELSQLRRSRDDADRR------YQSRLQDLKDRLEQ 824
Cdd:COG1196 739 EELLEEEELLEEEALEELPEppdleeLERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
285-846 |
1.48e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 285 INTLTRQKELLLQklstFEETNRTLRDL------LREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVE 358
Cdd:TIGR02168 202 LKSLERQAEKAER----YKELKAELRELelallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 359 ELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK 438
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 439 ESLKKAIRAQKERAEKSEEYAEQLHvQLADKdlyVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTL 518
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLE-TLRSK---VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 519 E-EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKS------QVMK 591
Cdd:TIGR02168 434 ElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 592 TRLEAD----------EVAAQLERC--------------DKENKILKD-EMNKEIEAARRQF------------QSQLAD 634
Cdd:TIGR02168 514 NQSGLSgilgvlseliSVDEGYEAAieaalggrlqavvvENLNAAKKAiAFLKQNELGRVTFlpldsikgteiqGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 635 LQQLPDILKITeAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQ-------------GDKL----------EMAREKH 691
Cdd:TIGR02168 594 LKNIEGFLGVA-KDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAkklrpgyrivtldGDLVrpggvitggsAKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 692 QASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAiedarRQVEQTKEH 771
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-----EAEVEQLEE 747
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1191704925 772 ALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANV 846
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
212-836 |
3.17e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 3.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 212 EHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTC-TDINTLTR 290
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 291 QKELLLQKLstfEETNRTLRDLL-REQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKA 369
Cdd:TIGR02169 302 EIASLERSI---AEKERELEDAEeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 370 QAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKA----- 444
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQewkle 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 445 -IRAQKERAEKS----EEYAEQLHVQLADKDLYVAEALSTLESWRSR------------------YNQV-----VKEKGD 496
Cdd:TIGR02169 459 qLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraveevlkasiqgvHGTVaqlgsVGERYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 497 LELEI--------IVLND-----------------RVTDL----VNQQQTLEEKMRED---------------------- 525
Cdd:TIGR02169 539 TAIEVaagnrlnnVVVEDdavakeaiellkrrkagRATFLplnkMRDERRDLSILSEDgvigfavdlvefdpkyepafky 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 526 --RDSLV----ERLHRQTAEYSAFKLENERLKAS-------FAPMEDKLNQAHL--EVQQLKASVKNYEGMIDNYKSQVM 590
Cdd:TIGR02169 619 vfGDTLVvediEAARRLMGKYRMVTLEGELFEKSgamtggsRAPRGGILFSRSEpaELQRLRERLEGLKRELSSLQSELR 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 591 KTRLEADEVAAQLERCDKENKilkdEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAII 670
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIG----EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 671 SDLRSRIEHQGDKLEMAR-----EKHQASQKENKQLSLKVDELERKLEATS--------------AQNIEFLQVIAKREE 731
Cdd:TIGR02169 775 HKLEEALNDLEARLSHSRipeiqAELSKLEEEVSRIEARLREIEQKLNRLTlekeylekeiqelqEQRIDLKEQIKSIEK 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 732 AIHQSQLRLEEKTRECGTLA---RQLESAIEDARRQVEQTKEHAlskeRAAQNKILDLETQLSRTKTELSQLrrsrddad 808
Cdd:TIGR02169 855 EIENLNGKKEELEEELEELEaalRDLESRLGDLKKERDELEAQL----RELERKIEELEAQIEKKRKRLSEL-------- 922
|
730 740
....*....|....*....|....*...
gi 1191704925 809 rryQSRLQDLKDRLEQSESTNRSMQNYV 836
Cdd:TIGR02169 923 ---KAKLEALEEELSEIEDPKGEDEEIP 947
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
504-827 |
7.90e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 7.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 504 LNDRVTDLVNQQQTLEEKMR--EDRDSLVERLHRQTAEYSAFKLEneRLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 581
Cdd:COG1196 191 LEDILGELERQLEPLERQAEkaERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 582 IDNYKSQVMKTRLEADEVAAQLERCDKEnkilKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 661
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAE----LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 662 KNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQniefLQVIAKREEAIHQSQLRLE 741
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 742 EKTRECGTLARQLESAIEDARRQVEQTKEHAL---SKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDL 818
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAeleEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
....*....
gi 1191704925 819 KDRLEQSES 827
Cdd:COG1196 501 ADYEGFLEG 509
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
206-713 |
9.31e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.81 E-value: 9.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 206 HELAETEHENTVLRHniERMKEEKDFTILQKKhlQQEKECLMSKLVEAEmdgaaaaKQVMALKDTIGKLKTEKQMTCTDI 285
Cdd:TIGR04523 180 KEKLNIQKNIDKIKN--KLLKLELLLSNLKKK--IQKNKSLESQISELK-------KQNNQLKDNIEKKQQEINEKTTEI 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 286 NTLTRQKELLLQklstfeETNRTLRDLLREQHCKEDSERLMEQqgaLLKRLAEADSE-KARLLLLLQDKDKEVEELLQEI 364
Cdd:TIGR04523 249 SNTQTQLNQLKD------EQNKIKKQLSEKQKELEQNNKKIKE---LEKQLNQLKSEiSDLNNQKEQDWNKELKSELKNQ 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 365 QCEKAQAKTasELSKSMESMrghlqaqlrskeaenSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKgdrdKESLKKA 444
Cdd:TIGR04523 320 EKKLEEIQN--QISQNNKII---------------SQLNEQISQLKKELTNSESENSEKQRELEEKQNE----IEKLKKE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 445 IRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLE---EK 521
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKN 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 522 MREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAA 601
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 602 QLErcDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKnidltaiISDLRSRIEHQG 681
Cdd:TIGR04523 539 KIS--DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE-------KKDLIKEIEEKE 609
|
490 500 510
....*....|....*....|....*....|..
gi 1191704925 682 DKLEMAREKHQASQKENKQLSLKVDELERKLE 713
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
325-824 |
9.38e-11 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.02 E-value: 9.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 325 LMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-----SELSKSMESMRGHLQAQLRSKEAEN 399
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAvakdrSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 400 SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyvaeALST 479
Cdd:pfam12128 347 EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAED-------DLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 480 LES-WRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQ-TLEEKMR-EDRDSLVER----LHRQTAEYSAFKLENERLKA 552
Cdd:pfam12128 420 LESeLREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATaTPELLLQlENFDERIERareeQEAANAEVERLQSELRQARK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 553 SFAPMEDKLNQAHLEVQQLKASVKNYEGMID----------NYKSQVMKTRLEADEVAAQLERCDkenkiLKDEMNKEIE 622
Cdd:pfam12128 500 RRDQASEALRQASRRLEERQSALDELELQLFpqagtllhflRKEAPDWEQSIGKVISPELLHRTD-----LDPEVWDGSV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 623 AARRQFQSQLADLQQL--PDILKITEAklaecqdqlqgyerknidltaiisdLRSRIEHQGDKLEMAREKHQASQKENKQ 700
Cdd:pfam12128 575 GGELNLYGVKLDLKRIdvPEWAASEEE-------------------------LRERLDKAEEALQSAREKQAAAEEQLVQ 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 701 LSLKVDELERKLEatsaqnieflqvIAKReeAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKehalsKERAAQ 780
Cdd:pfam12128 630 ANGELEKASREET------------FART--ALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERL-----NSLEAQ 690
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1191704925 781 NKILDLETQ--LSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQ 824
Cdd:pfam12128 691 LKQLDKKHQawLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKA 736
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
291-742 |
1.47e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.14 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 291 QKELLLQKLSTFEETNRTLRDLLRE-QHCKEDSERLMEQQGALLK-RLAEADSEKARLLLLLQDKDKEVEELL------- 361
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSELREaKRMYEDKIEELEKQLVLANsELTEARTERDQFSQESGNLDDQLQKLLadlhkre 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 362 QEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERS-GNQHKAEVEAI------MEQLKELKQKG 434
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIqgknesLEKVSSLTAQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 435 DRDKESLKKAIR---AQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYN------QVVKEKGD------LEL 499
Cdd:pfam15921 471 ESTKEMLRKVVEeltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQHLKNEGDhlrnvqTEC 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 500 EIIVLN---------------DRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQA 564
Cdd:pfam15921 551 EALKLQmaekdkvieilrqqiENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 565 HLE--------VQQLKAsVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQ 636
Cdd:pfam15921 631 ELEkvklvnagSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 637 QLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMA-REKHQASQKENK------QLSLKVDELE 709
Cdd:pfam15921 710 QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAnKEKHFLKEEKNKlsqelsTVATEKNKMA 789
|
490 500 510
....*....|....*....|....*....|...
gi 1191704925 710 RKLEATSAQNIEFLQVIAKREEAIHQSQLRLEE 742
Cdd:pfam15921 790 GELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
592-830 |
6.22e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 6.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 592 TRLEA--DEVAAQLERCDKE-------NKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 662
Cdd:COG1196 189 ERLEDilGELERQLEPLERQaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 663 NIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEE 742
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 743 KTRECGTLARQLESAiEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRL 822
Cdd:COG1196 349 AEEELEEAEAELAEA-EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
....*...
gi 1191704925 823 EQSESTNR 830
Cdd:COG1196 428 EALAELEE 435
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
260-788 |
2.95e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.82 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 260 AAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETnrtlrdLLREQHCKEDSERLMEQQGALLKRLAEA 339
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV------LEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 340 DSEKARLLLLLQDKDKEVEELLQEiqcekaqaktaselsksmesmRGHLQAQLRSKEAENSRLCMQIKNLERSgnqhKAE 419
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEE---------------------RDDLLAEAGLDDADAEAVEARREELEDR----DEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 420 VEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLH-------VQLADKDLYVAEALSTLESWRSRYNQVVK 492
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELEseleearEAVEDRREEIEELEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 493 EKGDLE--LEIIV-----LNDRVTDLVNQQQTLEEKMREDRDSL-----------------VERLHRQTAEYSAFKLENE 548
Cdd:PRK02224 406 DLGNAEdfLEELReerdeLREREAELEATLRTARERVEEAEALLeagkcpecgqpvegsphVETIEEDRERVEELEAELE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 549 RLKASFAPMEDKLNQA------HLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQlercdkenkilKDEMNKEIE 622
Cdd:PRK02224 486 DLEEEVEEVEERLERAedlveaEDRIERLEERREDLEELIAERRETIEEKRERAEELRER-----------AAELEAEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 623 AARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNiDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLS 702
Cdd:PRK02224 555 EKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR-TLLAAIADAEDEIERLREKREALAELNDERRERLAEKR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 703 LKVDELERKLEatsAQNIEFLQviAKREEAiHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEhaLSKERAA-QN 781
Cdd:PRK02224 634 ERKRELEAEFD---EARIEEAR--EDKERA-EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE--LRERREAlEN 705
|
....*..
gi 1191704925 782 KILDLET 788
Cdd:PRK02224 706 RVEALEA 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
506-841 |
8.82e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 8.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 506 DRVTDLVN----QQQTLEEKMRedrdsLVERLHRQTAEYSAfkLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 581
Cdd:TIGR02168 189 DRLEDILNelerQLKSLERQAE-----KAERYKELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 582 IDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNkEIEAARRQFQSQLADLQQlpdilkiteaKLAECQDQLQGYER 661
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLER----------QLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 662 KNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEAtsaqnieflqviAKREEAIHQSQLRLE 741
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET------------LRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 742 EKTREcgtlarQLESAIEDARRQVEQTKEHALSKERAAQ-NKILDLETQLSRTKTELSQLRRSRDDAdrryQSRLQDLKD 820
Cdd:TIGR02168 399 NNEIE------RLEARLERLEDRRERLQQEIEELLKKLEeAELKELQAELEELEEELEELQEELERL----EEALEELRE 468
|
330 340
....*....|....*....|.
gi 1191704925 821 RLEQSESTNRSMQNYVQFLKS 841
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQA 489
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
223-833 |
1.15e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 223 ERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTF 302
Cdd:pfam15921 92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 303 EETNRTLRdLLREQHCKEDSERLMEQQGALLKRLAEADSekaRLLLLLQDKDKEVEELLQEIQCEkaqaktASELSKSME 382
Cdd:pfam15921 172 IEQLRKMM-LSHEGVLQEIRSILVDFEEASGKKIYEHDS---MSTMHFRSLGSAISKILRELDTE------ISYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 383 SMRGHLQAqLRSKEAENSRLCMQIKN--LERSGNQHKAEVEAIMEQLKELKQKGDrdkeslkkAIRAQKERAEKSEEYAE 460
Cdd:pfam15921 242 PVEDQLEA-LKSESQNKIELLLQQHQdrIEQLISEHEVEITGLTEKASSARSQAN--------SIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 461 QLHV-QLADKDLYVAEALSTLESWRSRYNQVVKEkgdLELEIIVLNDRVTDLVNQQQTLEEK---MREDRDSLVERLHRQ 536
Cdd:pfam15921 313 SMYMrQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 537 TAEYSAFKLENERL-------KASFAPMEDKLNQAHLEVQQLKASVKnyegmidnyksqVMKTRLEAdEVAAQLERCDKE 609
Cdd:pfam15921 390 EKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLK------------AMKSECQG-QMERQMAAIQGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 610 NKILK--DEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMA 687
Cdd:pfam15921 457 NESLEkvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 688 R---EKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVI--------------AKREEAIHQSQLRLEE----KTRE 746
Cdd:pfam15921 537 KnegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRLELQEfkilKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 747 CGTLaRQLESAIED-----------------ARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADR 809
Cdd:pfam15921 617 DAKI-RELEARVSDlelekvklvnagserlrAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN 695
|
650 660
....*....|....*....|....
gi 1191704925 810 RYQSRLQDLKDRLEQSESTNRSMQ 833
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSME 719
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
331-763 |
3.96e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 3.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 331 ALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLE 410
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 411 --RSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYN 488
Cdd:COG4717 130 lyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 489 QVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPM----------- 557
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllall 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 558 -------EDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVM-KTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQ 629
Cdd:COG4717 290 flllareKASLGKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 630 SQLADLQQLPDIlkITEAKLAECQDQLQGYErkniDLTAIISDLRSRIEHQGDKLEMAREKHQAsqkenKQLSLKVDELE 709
Cdd:COG4717 370 QEIAALLAEAGV--EDEEELRAALEQAEEYQ----ELKEELEELEEQLEELLGELEELLEALDE-----EELEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1191704925 710 RKLEATSAQNIEFLQVIAKREEAIHQ--SQLRLEEKTRECGTLARQLESAIEDARR 763
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
596-831 |
4.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 4.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 596 ADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRS 675
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 676 RIEHQGDKL-EMAREKHQASQKENKQLSLKVDELERKLEATSAQNiEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQL 754
Cdd:COG4942 98 ELEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1191704925 755 ESAIEDARRQVEQtkehaLSKERAAQNKIL-DLETQLSRTKTELSQLRRSrddadrryQSRLQDLKDRLEQSESTNRS 831
Cdd:COG4942 177 EALLAELEEERAA-----LEALKAERQKLLaRLEKELAELAAELAELQQE--------AEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
284-776 |
5.53e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 284 DINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQqgalLKRLAEADSEKARLLLLLQDKDKEVEELLQE 363
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK----LLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 364 IQCEKAQAKTASELSKSMESMRGHLQAQLR----SKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdke 439
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ--- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 440 slkkaIRAQKERAEKSEEYAEQLHVQLAdkdlyVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLE 519
Cdd:COG4717 232 -----LENELEAAALEERLKEARLLLLI-----AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 520 EKMREDRDSLVERlhrqtaeysafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYegmidnyksQVMKTRLEADEV 599
Cdd:COG4717 302 KEAEELQALPALE-----------ELEEEELEELLAALGLPPDLSPEELLELLDRIEEL---------QELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 600 AAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLpdilkitEAKLAECQDQLQGYERKNIDLTAIIS--DLRSRI 677
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL-------KEELEELEEQLEELLGELEELLEALDeeELEEEL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 678 EHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEatsaqnieflqvIAKREEAIHQSQLRLEEKTRECGTLaRQLESA 757
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEDGE------------LAELLQELEELKAELRELAEEWAAL-KLALEL 501
|
490
....*....|....*....
gi 1191704925 758 IEDARRQVEQTKEHALSKE 776
Cdd:COG4717 502 LEEAREEYREERLPPVLER 520
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
427-722 |
7.17e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 7.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 427 LKELKQKGDRDKESLKKAIRAQKERAEKSE-EYAEQLH------VQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLEL 499
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKekealeRQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 500 EIIVLNDRVTDLV-NQQQTLEEKMREdRDSLVERLHRQTAEYsafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY 578
Cdd:TIGR02169 273 LLEELNKKIKDLGeEEQLRVKEKIGE-LEAEIASLERSIAEK---ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 579 EGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMN---KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQ 655
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrEKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 656 LQGYERKNIDLTAIISDLRSRIEHQGDKLEMA--------------REKHQASQKENKQLSLKVDELERKLEATSAQNIE 721
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLaadlskyeqelydlKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
.
gi 1191704925 722 F 722
Cdd:TIGR02169 509 G 509
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
316-843 |
1.21e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.82 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 316 QHCKEDSERLMEQQgallKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRS- 394
Cdd:TIGR00606 412 QLCADLQSKERLKQ----EQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREl 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 395 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEE-------YAEQLHVQLA 467
Cdd:TIGR00606 488 SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrHSDELTSLLG 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 468 DKDlYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMR------------EDRDSLVERLHR 535
Cdd:TIGR00606 568 YFP-NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSsyedklfdvcgsQDEESDLERLKE 646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 536 Q--------------TAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKN----YEGMIDNYKSQVMKTRLEAD 597
Cdd:TIGR00606 647 EieksskqramlagaTAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSklrlAPDKLKSTESELKKKEKRRD 726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 598 EVAAQLERcdKENKIlkDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTaIISDLRSRI 677
Cdd:TIGR00606 727 EMLGLAPG--RQSII--DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT-IMERFQMEL 801
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 678 EHQGDKLEMAREKHQAS--QKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQsqlrLEEKTRECGTLARQLE 755
Cdd:TIGR00606 802 KDVERKIAQQAAKLQGSdlDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH----LKSKTNELKSEKLQIG 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 756 SAIEDARRQVEQTKEhaLSKE--------RAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSES 827
Cdd:TIGR00606 878 TNLQRRQQFEEQLVE--LSTEvqslireiKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
570
....*....|....*.
gi 1191704925 828 TNRSMQNYVQFLKSSY 843
Cdd:TIGR00606 956 YMKDIENKIQDGKDDY 971
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
302-837 |
1.25e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 302 FEETNRTLRDLLREQHCKEDSERLMEQQGALLK---RLAEADSEKA-----RLLLLLQDKDKEVEELLQEIQCEKAQAKT 373
Cdd:COG4913 234 FDDLERAHEALEDAREQIELLEPIRELAERYAAareRLAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 374 ASELSKSMESMRGHLQAQLRSKEAEN-SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERA 452
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 453 EKSEEYAEQLHVQLADkdlyvaealstlesWRSRYNQVVKEKGDLELEIIVLNDRVT----DLVNQQQTLEEKMREDRDS 528
Cdd:COG4913 394 EALEEELEALEEALAE--------------AEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALAEALGLDEAE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 529 L-------------------VER-LHRQtaeysAFKL--ENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMidnyk 586
Cdd:COG4913 460 LpfvgelievrpeeerwrgaIERvLGGF-----ALTLlvPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERP----- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 587 sqvmktRLEADEVAAQLERcdKENKI---LKDEMNKEIEAAR----RQFQ------------SQLADLQQLPDILKI--- 644
Cdd:COG4913 530 ------RLDPDSLAGKLDF--KPHPFrawLEAELGRRFDYVCvdspEELRrhpraitragqvKGNGTRHEKDDRRRIrsr 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 645 ------TEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAR--EKHQASQKENKQLSLKVDELERKLEATS 716
Cdd:COG4913 602 yvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLD 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 717 AQNIEfLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHAlskERAAQNKILDLETQLSRTKTE 796
Cdd:COG4913 682 ASSDD-LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLARLELRALLEERFAA 757
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1191704925 797 LSQlRRSRDDADRRYQSRLQDLKDRLEQSEST-NRSMQNYVQ 837
Cdd:COG4913 758 ALG-DAVERELRENLEERIDALRARLNRAEEElERAMRAFNR 798
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
424-838 |
1.30e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 424 MEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAE-QLHVQLADKDLyvaEALSTLESWRSRYnqvvKEKGDLELEII 502
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELEEELEElEAELEELREEL---EKLEKLLQLLPLY----QELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 503 VLNDRVTDLVNQQQTLEEKMREdrdslVERLHRQTAEYSAfKLENERLKASFApMEDKLNQAHLEVQQLKASVKNYEGMI 582
Cdd:COG4717 143 ELPERLEELEERLEELRELEEE-----LEELEAELAELQE-ELEELLEQLSLA-TEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 583 DNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADL--------------------------- 635
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLlsliltiagvlflvlgllallflllar 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 636 QQLPDILKITEAKLAECQDQLQGYERKNI--DLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERK-- 711
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELlaALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAal 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 712 LEATSAQNIEFLQVIAKREEaihqsqlRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALskeraaQNKILDLETQLS 791
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAE-------EYQELKEELEELEEQLEELLGELEELLEALDEEEL------EEELEELEEELE 442
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1191704925 792 RTKTELSQLrrsrddadrryQSRLQDLKDRLEQSESTNRSMQNYVQF 838
Cdd:COG4717 443 ELEEELEEL-----------REELAELEAELEQLEEDGELAELLQEL 478
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-745 |
1.78e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 333 LKRLAEADSEKARLLLLLQDKDKEVEEL---------LQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLC 403
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 404 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK--ESLKKAIRAQK-ERAEKSEEYAEQLHVQLADkDLYVAEALSTL 480
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKaDEAKKAEEAKKADEAKKAE-EKKKADELKKA 1554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 481 ESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQqqtLEEKMREDRDSLVERLHRQTAEySAFKLENERLKASfapmedk 560
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAE------- 1623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 561 lnqahlEVQQLKASVKNYEGMIDNYKSQVMKtrleadevAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQqlpD 640
Cdd:PTZ00121 1624 ------ELKKAEEEKKKVEQLKKKEAEEKKK--------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE---D 1686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 641 ILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELER-KLEATSAQN 719
Cdd:PTZ00121 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKkKIAHLKKEE 1766
|
410 420
....*....|....*....|....*.
gi 1191704925 720 IEFLQVIAKREEAIHQSQLRLEEKTR 745
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
299-827 |
1.78e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 299 LSTFEETNRTLRDLLRE-QHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASEL 377
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEiKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 378 SKSMESmrghLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQ-KGDRDK-ESLKKAIRAQKERAEKS 455
Cdd:PRK03918 237 KEEIEE----LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 456 EEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVtDLVNQQQTLEEKMREDRDSL----VE 531
Cdd:PRK03918 313 EKRLSRLEEEING----IEERIKELEEKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLtgltPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 532 RLHRQTAEYSAFKLENER----LKASFAPMEDKLNQAHLEVQQLKAS-----VKNYEGMIDNYKSQVMKTRLEADEVAAQ 602
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEeiskITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 603 LERCDKENKILKDEMnKEIEAARRQfQSQLADLQQLPDILKITEAKLAECQ--------DQLQGYERKNIDLTAIISDLR 674
Cdd:PRK03918 468 LKEIEEKERKLRKEL-RELEKVLKK-ESELIKLKELAEQLKELEEKLKKYNleelekkaEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 675 SRIEhqgdKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQ-------SQLRLEEKTREC 747
Cdd:PRK03918 546 KELE----KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNeylelkdAEKELEREEKEL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 748 GTLARQLESA----------IEDARRQVEQ-TKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADrryqSRLQ 816
Cdd:PRK03918 622 KKLEEELDKAfeelaetekrLEELRKELEElEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK----KTLE 697
|
570
....*....|.
gi 1191704925 817 DLKDRLEQSES 827
Cdd:PRK03918 698 KLKEELEEREK 708
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-777 |
2.13e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 536 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKEnkilKD 615
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE----IA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 616 EMNKEIEAARRQFQSQLADLQQLPdilKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQ 695
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 696 KENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSK 775
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
..
gi 1191704925 776 ER 777
Cdd:COG4942 251 LK 252
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-823 |
2.75e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 504 LNDRVTDLVNQQQTLEEKMRE---DRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG 580
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRienRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 581 MIDNYKSQVMKTRLEADEVAAQLERC-DKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGY 659
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 660 ERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLR 739
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 740 LEEKTRECGTLARQLeSAIEDARRQVEQTKEHALSKEraaqnkilDLETQLSRTKTELSQLRRSRDDADRRYQS---RLQ 816
Cdd:TIGR02169 919 LSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLE--------DVQAELQRVEEEIRALEPVNMLAIQEYEEvlkRLD 989
|
....*..
gi 1191704925 817 DLKDRLE 823
Cdd:TIGR02169 990 ELKEKRA 996
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
353-676 |
5.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 5.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 353 KDKEVEELLQEIQCEKAQAKtASELSKSMESMRghlqAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL-- 430
Cdd:TIGR02169 205 REREKAERYQALLKEKREYE-GYELLKEKEALE----RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnk 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 431 --KQKGDRDKESLKKAIR---AQKERAEKS----EEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEI 501
Cdd:TIGR02169 280 kiKDLGEEEQLRVKEKIGeleAEIASLERSiaekERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 502 IVLNDRVTDLVNQQQTLEEKMREDRDSLVERlhrqTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 581
Cdd:TIGR02169 360 AELKEELEDLRAELEEVDKEFAETRDELKDY----REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 582 IdnyksqvmkTRLEADevaaqlercdkenkilKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 661
Cdd:TIGR02169 436 I---------NELEEE----------------KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330
....*....|....*
gi 1191704925 662 KNIDLTAIISDLRSR 676
Cdd:TIGR02169 491 ELAEAEAQARASEER 505
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
258-816 |
7.59e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 7.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 258 AAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhckEDSERLMEQQGALLKRLA 337
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE---IHIRDAHEVATSIREISC 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 338 EADSEKARLLLLLQDK--DKEVEELL-QEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQ---IKNLER 411
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKttLTQKLQSLcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaaaITCTAQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 412 SGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQ--------LHVQLADKDLYVAEALStlesw 483
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcplcgscIHPNPARQDIDNPGPLT----- 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 484 rSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDS---LVERLHRQTAEYSAFKLENERLKaSFAPMEDK 560
Cdd:TIGR00618 528 -RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSfsiLTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 561 L-------NQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRqfQSQLA 633
Cdd:TIGR00618 606 AedmlaceQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR--QLALQ 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 634 DLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKE-NKQLSLKVDELERKL 712
Cdd:TIGR00618 684 KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAH 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 713 EATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLArQLESAIEDARRQVEQTKE---HALSKERAA-QNKILDLET 788
Cdd:TIGR00618 764 FNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-TLEAEIGQEIPSDEDILNlqcETLVQEEEQfLSRLEEKSA 842
|
570 580
....*....|....*....|....*...
gi 1191704925 789 QLSRTKTELSQLRRSRDDADRRYQSRLQ 816
Cdd:TIGR00618 843 TLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
388-777 |
1.79e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 1.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 388 LQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKE----------------- 450
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkkikelekqlnqlks 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 451 -----RAEKSEEYAEQLHVQLADKDlyvaEALSTLESWRSRYNQVVKEkgdLELEIIVLNDRVTDLVNQQQTLEEKMREd 525
Cdd:TIGR04523 296 eisdlNNQKEQDWNKELKSELKNQE----KKLEEIQNQISQNNKIISQ---LNEQISQLKKELTNSESENSEKQRELEE- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 526 RDSLVERLHRQTAEYsafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY-------EGMIDNYKSQVMKTRLEADE 598
Cdd:TIGR04523 368 KQNEIEKLKKENQSY---KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLqqekellEKEIERLKETIIKNNSEIKD 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 599 VA---AQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRS 675
Cdd:TIGR04523 445 LTnqdSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 676 RIEhqgdklEMAREKhqaSQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLE 755
Cdd:TIGR04523 525 KIE------KLESEK---KEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
410 420
....*....|....*....|..
gi 1191704925 756 SAIEDARRQVEQTKEHALSKER 777
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEK 617
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
277-822 |
2.47e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 277 EKQMTCTDINTLTRQKELLLQKLStfEETNRTLRDLLREQHCK-EDSERLMEQQGALLKRLAEADSEKARLLLLLqdkdK 355
Cdd:COG3096 240 ENRMTLEAIRVTQSDRDLFKHLIT--EATNYVAADYMRHANERrELSERALELRRELFGARRQLAEEQYRLVEMA----R 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 356 EVEELlqeiqcekaqAKTASELSKSMESMRGHL---QAQLRSKEAensrlcmqiknLERsgnqHKAEVEAIMEQLKElkQ 432
Cdd:COG3096 314 ELEEL----------SARESDLEQDYQAASDHLnlvQTALRQQEK-----------IER----YQEDLEELTERLEE--Q 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 433 KGDRdKESLKKAIRAQkERAEKSEEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVKEKGDL-------ELEIIVLN 505
Cdd:COG3096 367 EEVV-EEAAEQLAEAE-ARLEAAEEEVDSLKSQLAD----YQQALDVQQTRAIQYQQAVQALEKAralcglpDLTPENAE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 506 DRVTDLVNQQQTLEEKMR--EDRDSLVERLHRQTAEysAFKLenerlkasfapmedklnqahleVQQLKASVknyegmid 583
Cdd:COG3096 441 DYLAAFRAKEQQATEEVLelEQKLSVADAARRQFEK--AYEL----------------------VCKIAGEV-------- 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 584 nyksqvmkTRLEADEVAAQLERCDKENKILkdemnkeieAARR-QFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 662
Cdd:COG3096 489 --------ERSQAWQTARELLRRYRSQQAL---------AQRLqQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 663 NIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELerkleatsaqnieflqviAKREEAIHQSQLRLEe 742
Cdd:COG3096 552 AEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKEL------------------AARAPAWLAAQDALE- 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 743 ktrecgTLARQLESAIEDArRQVEQTKEHALSKERAAQNkildLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRL 822
Cdd:COG3096 613 ------RLREQSGEALADS-QEVTAAMQQLLEREREATV----ERDELAARKQALESQIERLSQPGGAEDPRLLALAERL 681
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
582-845 |
3.89e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 3.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 582 IDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNK---EIEAARR--QFQSQLADLQQ--LPDILKITEAKLAECQD 654
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERlrrEREKAERyqALLKEKREYEGyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 655 QLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQA-SQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAI 733
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 734 HQSQLRLEEKTREcgtlARQLESAIEDARRQVEQTKEHALSKE---RAAQNKILDLETQLSRTKTELSQlrrsrddadrr 810
Cdd:TIGR02169 325 AKLEAEIDKLLAE----IEELEREIEEERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDELKD----------- 389
|
250 260 270
....*....|....*....|....*....|....*
gi 1191704925 811 YQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYAN 845
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
201-841 |
9.92e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 9.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 201 LEEVAHELAE-----TEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEmdgaaaakqvMALKDTIGKLK 275
Cdd:pfam02463 178 LIEETENLAEliidlEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE----------ERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 276 TEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDK 355
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 356 EVEELLQEIQCEKAQAKTASELSKSM--ESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQK 433
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAeeEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 434 GDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLAD--KDLYVAEALSTLESWRSRYNQVVKEKGDLELEIivlndrvtdl 511
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKqgKLTEEKEELEKQELKLLKDELELKKSEDLLKET---------- 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 512 VNQQQTLEEKMREDRDSLVERLHRQTAeysafklENERLKASFAPMEDKLNQAHLEVQQLKasvKNYEGMIDNYKSQVMK 591
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESK-------ARSGLKVLLALIKDGVGGRIISAHGRL---GDLGVAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 592 TRLEADEVAAQLERCDKENKILKDEMNkeIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTA--- 668
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELP--LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkvv 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 669 -IISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTREC 747
Cdd:pfam02463 626 eGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 748 GTLARQLESAIEDARRQVEQTKEhalSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSES 827
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQ---EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK 782
|
650
....*....|....
gi 1191704925 828 TNRSMQNYVQFLKS 841
Cdd:pfam02463 783 TEKLKVEEEKEEKL 796
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
600-797 |
1.15e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 600 AAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKnidltaiisdlRSRIEH 679
Cdd:COG4717 55 ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE-----------LEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 680 QGDKLEMAREKHQAsQKENKQLSLKVDELERKLEATSaqniEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIE 759
Cdd:COG4717 124 LLQLLPLYQELEAL-EAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLA 198
|
170 180 190
....*....|....*....|....*....|....*...
gi 1191704925 760 DARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTEL 797
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
200-796 |
2.74e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 200 ELEEVAHELAETEHENTVLRHNIERMKEEKdftilqkkhlqQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQ 279
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEV-----------KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 280 MTCTDINTLtRQKELLLQKLSTFEETNRTLRDLLRE-----QHCKEDSERLMEQQGALLKRLAEADSEKARLllllqdkd 354
Cdd:PRK03918 270 ELKKEIEEL-EEKVKELKELKEKAEEYIKLSEFYEEyldelREIEKRLSRLEEEINGIEERIKELEEKEERL-------- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 355 KEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQaQLRSKEAENS--RLCMQIKNLERSGNQHKAEVEAIMEQLKELKQ 432
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTpeKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 433 KgdrdKESLKKAIRAQKE--------RAEKSEEYAEQLhvqLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVL 504
Cdd:PRK03918 420 E----IKELKKAIEELKKakgkcpvcGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 505 ND--RVTDLVNQQQTLEEKMREDRdslVERLHRQTAEYSAFKLENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMI 582
Cdd:PRK03918 493 SEliKLKELAEQLKELEEKLKKYN---LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 583 DNYKSqvmktrlEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSqladLQQLPDILKITEAKLAECQDQLQGYERK 662
Cdd:PRK03918 566 DELEE-------ELAELLKELEELGFESVEELEERLKELEPFYNEYLE----LKDAEKELEREEKELKKLEEELDKAFEE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 663 NIDLTAIISDLRSRIEHQG-----DKLEMAREKHQASQKENKQLSLKVDELERKLEaTSAQNIEFLQviaKREEAIHQSQ 737
Cdd:PRK03918 635 LAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRRE-EIKKTLEKLK---EELEEREKAK 710
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1191704925 738 LRLEektrecgtlarQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTE 796
Cdd:PRK03918 711 KELE-----------KLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTE 758
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
504-832 |
2.92e-05 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 46.84 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 504 LNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAE----YSAFKLENERLKASF-------APMEDKLNQAHLEVQQLK 572
Cdd:pfam00038 9 LNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEpsrlYSLYEKEIEDLRRQLdtltverARLQLELDNLRLAAEDFR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 573 ASVKNYEGMIDNYKSQVMKTRLEADEvaAQLERCDKENKIlkDEMNKEIEAARRQFQSQLADLQqlpdilkiteAKLAEC 652
Cdd:pfam00038 89 QKYEDELNLRTSAENDLVGLRKDLDE--ATLARVDLEAKI--ESLKEELAFLKKNHEEEVRELQ----------AQVSDT 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 653 QDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENkqlslkvdelerkLEATSAQNIEFLQviAKREEa 732
Cdd:pfam00038 155 QVNVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEE-------------LQQAAARNGDALR--SAKEE- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 733 IHQSQLRLEEKTRECGTLARQLESaIEDARRQVEQTKEHALSKeraAQNKILDLETQLSRTKTELSQLrrsrddaDRRYQ 812
Cdd:pfam00038 219 ITELRRTIQSLEIELQSLKKQKAS-LERQLAETEERYELQLAD---YQELISELEAELQETRQEMARQ-------LREYQ 287
|
330 340
....*....|....*....|
gi 1191704925 813 SrLQDLKDRLEQSESTNRSM 832
Cdd:pfam00038 288 E-LLNVKLALDIEIATYRKL 306
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
552-780 |
3.08e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 552 ASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILK---DEMNKEIEAARRQF 628
Cdd:COG3883 9 PTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQaeiAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 629 QSQLADLQQLPDILKITEAKLAecQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDEL 708
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLG--SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1191704925 709 ERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQ 780
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-564 |
3.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 351 QDKDKEVEELLQEIQcekAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL 430
Cdd:COG4942 19 ADAAAEAEAELEQLQ---QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 431 KQKGDRDKESLKKAIRAQKERAEKSE-------EYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIV 503
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPlalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191704925 504 LNDRVTDLVNQQQTLEEKMREdRDSLVERLHRQTAEYSAfklENERLKASFAPMEDKLNQA 564
Cdd:COG4942 176 LEALLAELEEERAALEALKAE-RQKLLARLEKELAELAA---ELAELQQEAEELEALIARL 232
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
546-800 |
3.54e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 46.98 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 546 ENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENkilkdemnkeiEAAR 625
Cdd:pfam19220 4 RNELLRVRLGEMADRLE----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAY-----------GKLR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 626 RQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKV 705
Cdd:pfam19220 69 RELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 706 DELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLAR---QLESAIEDARRQVEQTkEHALSKERAAQNK 782
Cdd:pfam19220 149 QAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRrlaELETQLDATRARLRAL-EGQLAAEQAERER 227
|
250
....*....|....*....
gi 1191704925 783 IL-DLETQLSRTKTELSQL 800
Cdd:pfam19220 228 AEaQLEEAVEAHRAERASL 246
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
277-822 |
4.36e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 277 EKQMTCTDINTlTRQKELLLQKLSTfEETNRTLRDLLREQhckedSERLMEQQGALLKRLAEADSEKARLLLllqdkdke 356
Cdd:PRK04863 241 ENRMTLEAIRV-TQSDRDLFKHLIT-ESTNYVAADYMRHA-----NERRVHLEEALELRRELYTSRRQLAAE-------- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 357 vEELLQEIQCE-KAQAKTASELSKSMESMRGHL---QAQLRSKEaensrlcmQIKnlersgnQHKAEVEAIMEQLKELKQ 432
Cdd:PRK04863 306 -QYRLVEMARElAELNEAESDLEQDYQAASDHLnlvQTALRQQE--------KIE-------RYQADLEELEERLEEQNE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 433 KgdrDKESLKKAIRAQkERAEKSEEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVK--EK-----GDLELEIIVLN 505
Cdd:PRK04863 370 V---VEEADEQQEENE-ARAEAAEEEVDELKSQLAD----YQQALDVQQTRAIQYQQAVQalERakqlcGLPDLTADNAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 506 DRVTDLVNQQQTLEEKMR--EDRDSLVERLHRQTAEysAFKLenerlkasfapmedklnqahleVQQLKASVknyegmid 583
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLslEQKLSVAQAAHSQFEQ--AYQL----------------------VRKIAGEV-------- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 584 nyksqvmkTRLEADEVAAQLERCDKENKILkdemnkeieAARR-QFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 662
Cdd:PRK04863 490 --------SRSEAWDVARELLRRLREQRHL---------AEQLqQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 663 NIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELErkleatsaqnieflqviaKREEAIHQSQLRLEE 742
Cdd:PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA------------------ARAPAWLAAQDALAR 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 743 ktrecgtLARQLESAIEDArRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADrryqSRLQDLKDRL 822
Cdd:PRK04863 615 -------LREQSGEEFEDS-QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSED----PRLNALAERF 682
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
676-831 |
5.21e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 5.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 676 RIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQnieflqvIAKREEAIHQSQLRLEEKTRECGTLARQLE 755
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-------LEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191704925 756 SAIEDaRRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRS 831
Cdd:COG1196 306 RLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
170-666 |
6.54e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 170 MNAVGCLKSEVKMQKGERQMAKRFLEERkeeleevaheLAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSK 249
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDK----------IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 250 LVEAEMDGAAAAKQVMALKD-------TIGKLKTEkqmtCTDINTLTRQKELLLQKLSTfeetnrtlrdllreqHCKEDS 322
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRE----LDDRNMEVQRLEALLKAMKS---------------ECQGQM 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 323 ERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRL 402
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 403 CMQIKNLERSGNQ--HKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYA-------EQLHVQLADKDLYV 473
Cdd:pfam15921 527 DLKLQELQHLKNEgdHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAgamqvekAQLEKEINDRRLEL 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 474 AEALSTLESWRSRYNQVVKEKGDLELEIIVL----NDRVTDLVNQQQTLEEKMREDRDSLVErLHRQTAEYSA----FKL 545
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNE-LNSLSEDYEVlkrnFRN 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 546 ENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG-------MIDNYKSQVMKTRLEADEVAAQLE-------RCDKENK 611
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamkVAMGMQKQITAKRGQIDALQSKIQfleeamtNANKEKH 765
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1191704925 612 ILKDEMNK-----------------EIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL 666
Cdd:pfam15921 766 FLKEEKNKlsqelstvateknkmagELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
405-656 |
6.57e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.97 E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 405 QIKNLERSGNQHKAE-VEAIMEQLKELkqkgDRDKESLKKAIRAQK---ERAEKSEEYAEQLhVQLADKDLYVAEALSTl 480
Cdd:PRK10929 31 ELEQAKAAKTPAQAEiVEALQSALNWL----EERKGSLERAKQYQQvidNFPKLSAELRQQL-NNERDEPRSVPPNMST- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 481 eswrsrynqvvkekGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPmEDK 560
Cdd:PRK10929 105 --------------DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTP-NTP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 561 LNQAHL-----EVQQLKASVKNYE--GMIDNYKSQVmkTRLEADEVAAQLERCDKENKILKDEMNkeieaARRQFQSQLA 633
Cdd:PRK10929 170 LAQAQLtalqaESAALKALVDELElaQLSANNRQEL--ARLRSELAKKRSQQLDAYLQALRNQLN-----SQRQREAERA 242
|
250 260
....*....|....*....|...
gi 1191704925 634 dlqqlpdiLKITEaKLAECQDQL 656
Cdd:PRK10929 243 --------LESTE-LLAEQSGDL 256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-826 |
6.91e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 523 REDRDSLVERLHRQTAEysafKLENERLKAsfapmedklnqahLEVQQLKASVKNYEGMIDNYKSQVMKTRLEAdeVAAQ 602
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLE----RLRREREKA-------------ERYQALLKEKREYEGYELLKEKEALERQKEA--IERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 603 LERCDKENKILK---DEMNKEIEAARrqfqsqladlQQLPDILKITEAKLAECQDQLQgyeRKNIDLTAIISDLRSRIEH 679
Cdd:TIGR02169 246 LASLEEELEKLTeeiSELEKRLEEIE----------QLLEELNKKIKDLGEEEQLRVK---EKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 680 QGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLesaiE 759
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL----K 388
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1191704925 760 DARRQVEQTKEHALSKERaAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSE 826
Cdd:TIGR02169 389 DYREKLEKLKREINELKR-ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
205-455 |
8.88e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 205 AHELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTD 284
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 285 INTLTRQKELLLQKLSTFEETNRtLRDLLREQHCKEDSERLMeqqgaLLKRLAEADSEKArlllllqdkdkevEELlqei 364
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPP-LALLLSPEDFLDAVRRLQ-----YLKYLAPARREQA-------------EEL---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 365 qceKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKA 444
Cdd:COG4942 156 ---RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
250
....*....|.
gi 1191704925 445 IRAQKERAEKS 455
Cdd:COG4942 233 EAEAAAAAERT 243
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
509-800 |
1.42e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.33 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 509 TDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERlkASFAPMEDKLNQAHLEVQQLKASVKNYEGMID----- 583
Cdd:COG5185 234 ALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENA--ESSKRLNENANNLIKQFENTKEKIAEYTKSIDikkat 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 584 NYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKIT--EAKLAECQDQLqgyER 661
Cdd:COG5185 312 ESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSksSEELDSFKDTI---ES 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 662 KNIDLTAIISDLRSRIEhqgDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKRE-EAIHQSQLRL 740
Cdd:COG5185 389 TKESLDEIPQNQRGYAQ---EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMrEADEESQSRL 465
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 741 EEKTREcgtLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQL 800
Cdd:COG5185 466 EEAYDE---INRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQV 522
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
618-841 |
1.83e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 618 NKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIehqgdklemarekhQASQKE 697
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL--------------AALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 698 NKQLSLKVDELERKLEATSAQNIEFLQVIAKREEaihQSQLRLEEKTRECGTLARQLE--SAIEDARRQVEQTKEHALSK 775
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGR---QPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191704925 776 ERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKS 841
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
315-817 |
2.02e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 315 EQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASE----LSKSMESMRGHLQA 390
Cdd:pfam05483 228 EEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhLTKELEDIKMSLQR 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 391 QLRSKEAENSRLCMQIKNLersgNQHKAEVEAIMEQLKELK-------QKGDRDKESLKKAIRAQKERAEKSEEYAEQLH 463
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTI----CQLTEEKEAQMEELNKAKaahsfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKIIT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 464 VQLADKDLYVAE----------ALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLV--- 530
Cdd:pfam05483 384 MELQKKSSELEEmtkfknnkevELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTaik 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 531 --ERLHRQTAEYSAFKLENERLKASfaPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDK 608
Cdd:pfam05483 464 tsEEHYLKEVEDLKTELEKEKLKNI--ELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 609 ENKILKDEMnkeiEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAR 688
Cdd:pfam05483 542 KEMNLRDEL----ESVREEFIQKGDEVKCK---LDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELH 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 689 EKHQASQK----ENKQLS---LKVDELERKLEATSaqnieflqviAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDA 761
Cdd:pfam05483 615 QENKALKKkgsaENKQLNayeIKVNKLELELASAK----------QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIA 684
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1191704925 762 RRQVEQTKEhalsKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQD 817
Cdd:pfam05483 685 DEAVKLQKE----IDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQE 736
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
419-846 |
2.51e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 419 EVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHvqlADKDLYvAEAlstlESWRSRynqVVKEKGDLE 498
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQ---AETELC-AEA----EEMRAR---LAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 499 LEIIVLNDRV---TDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASV 575
Cdd:pfam01576 75 EILHELESRLeeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 576 KNYEGMIDNYKSQVM----------KTRLEADEVAAQLERCDKENKILKDEMNK---EIEAARRQFQSQLADLQQLPDIL 642
Cdd:pfam01576 155 KLLEERISEFTSNLAeeeekakslsKLKNKHEAMISDLEERLKKEEKGRQELEKakrKLEGESTDLQEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 643 KITEAK----LAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVD----ELERKLEA 714
Cdd:pfam01576 235 RAQLAKkeeeLQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEalktELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 715 TSAQNieflQVIAKREEAIHQSQLRLEEKTR----ECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNkildLETQL 790
Cdd:pfam01576 315 TAAQQ----ELRSKREQEVTELKKALEEETRsheaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQA----LESEN 386
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1191704925 791 SRTKTE---LSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANV 846
Cdd:pfam01576 387 AELQAElrtLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESV 445
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
620-785 |
2.51e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 620 EIEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMARekhqaSQKENK 699
Cdd:COG1579 21 RLEHRLKELPAELAELEDE---LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-----NNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 700 QLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQtkehaLSKERAA 779
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEE-----LEAEREE 167
|
....*.
gi 1191704925 780 QNKILD 785
Cdd:COG1579 168 LAAKIP 173
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
629-828 |
3.91e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 629 QSQLAD-LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDE 707
Cdd:pfam07888 33 QNRLEEcLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 708 LERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTREcgtlarqLESAIEDARRQVEQTKEHAlSKERAAQNKILDLE 787
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETE-------LERMKERAKKAGAQRKEEE-AERKQLQAKLQQTE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1191704925 788 TQLSRTKTELSQLRRSRDDADRRYQsRLQDLKDRLEQSEST 828
Cdd:pfam07888 185 EELRSLSKEFQELRNSLAQRDTQVL-QLQDTITTLTQKLTT 224
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
205-767 |
4.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 205 AHELAETEHENTVLRHNIERMKEEKDftilqkkhlqqekeclmskLVEAEMDGAAAakqvmalkDTIGKLKTEkqmtctd 284
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELD-------------------ELEAQIRGNGG--------DRLEQLERE------- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 285 INTLTRQKELLLQKLSTFEETNRTL-------RDLLREQHckedsERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEV 357
Cdd:COG4913 347 IERLERELEERERRRARLEALLAALglplpasAEEFAALR-----AEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 358 EELLQEIQcekAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLC--MQIKNLERS---------GNQ---------HK 417
Cdd:COG4913 422 RELEAEIA---SLERRKSNIPARLLALRDALAEALGLDEAELPFVGelIEVRPEEERwrgaiervlGGFaltllvppeHY 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 418 AEVEAIMEQLKeLKQK--GDRDKESLKKAIRAQKER---AEKSE----EYAEQLHVQLADKDLYV----AEALS------ 478
Cdd:COG4913 499 AAALRWVNRLH-LRGRlvYERVRTGLPDPERPRLDPdslAGKLDfkphPFRAWLEAELGRRFDYVcvdsPEELRrhprai 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 479 TLE----SWRSRYnqvvkEKGD----LELEIIVLN--DRVTDLVNQQQTLEEKMREdRDSLVERLHRQTAEYSAFKLENE 548
Cdd:COG4913 578 TRAgqvkGNGTRH-----EKDDrrriRSRYVLGFDnrAKLAALEAELAELEEELAE-AEERLEALEAELDALQERREALQ 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 549 RLkASFAPMEDKLNQAHLEVQQLKASVKNyegmIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEM---NKEIEAAR 625
Cdd:COG4913 652 RL-AEYSWDEIDVASAEREIAELEAELER----LDASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlEKELEQAE 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 626 RQFQSQLADLQQLPDILKITEAKLAE------CQDQLQGYERKNidLTAIISDLRSRIEHQGDKLEMAREKHQASQKENk 699
Cdd:COG4913 727 EELDELQDRLEAAEDLARLELRALLEerfaaaLGDAVERELREN--LEERIDALRARLNRAEEELERAMRAFNREWPAE- 803
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191704925 700 qlslkVDELERKLEAtsaqNIEFLQVIAK-REEAIHQ-----SQLRLEEKTRECGTLARQLESAIEDARRQVEQ 767
Cdd:COG4913 804 -----TADLDADLES----LPEYLALLDRlEEDGLPEyeerfKELLNENSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
320-782 |
4.70e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 320 EDSERLMEQQGALLKRLAEA-----DSEKARLLLLLQDKDKeVEELLQEIQCEKAQAKTASELSKSMESMRghlQAQLRS 394
Cdd:PTZ00121 1161 EDARKAEEARKAEDAKKAEAarkaeEVRKAEELRKAEDARK-AEAARKAEEERKAEEARKAEDAKKAEAVK---KAEEAK 1236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 395 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQK-ERAEKSEEyaeqlhVQLADKDLYV 473
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKaDEAKKAEE------KKKADEAKKK 1310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 474 AEALSTLESWRSRYNQVVKEKGDLeleiivlndrvtdlvnQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKAS 553
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAA----------------KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 554 FAPME-DKLNQAHLEVQQLKASVKNYEGmiDNYKSQVMKTRLEADEVAAQLERcDKENKILKDEMNKEIEAARR--QFQS 630
Cdd:PTZ00121 1375 EAKKKaDAAKKKAEEKKKADEAKKKAEE--DKKKADELKKAAAAKKKADEAKK-KAEEKKKADEAKKKAEEAKKadEAKK 1451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 631 QLADLQQLPDILKITE--------AKLAECQDQLQGYERKNIDLTAIISDLRSRIE--HQGDKLEMAREKHQASQKENKQ 700
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEeakkadeaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakKKADEAKKAEEAKKADEAKKAE 1531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 701 LSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQ 780
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
..
gi 1191704925 781 NK 782
Cdd:PTZ00121 1612 AK 1613
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
418-728 |
5.33e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 418 AEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQL---HVQLADKDLYVAE-ALSTLESWR--SRYNQVV 491
Cdd:TIGR01612 540 KEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLfdkYLEIDDEIIYINKlKLELKEKIKniSDKNEYI 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 492 KEKGDLElEIIVLND------------RVTDLVNQQQT--------LEEKMREDRDSLVERLHRQTAEYSafkLENERLK 551
Cdd:TIGR01612 620 KKAIDLK-KIIENNNayidelakispyQVPEHLKNKDKiystikseLSKIYEDDIDALYNELSSIVKENA---IDNTEDK 695
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 552 ASFAPMEDKLNQAHLEVQQLK-ASVKNYEGMIDNYKSQVMKTRLEADEVAAQlERCDKENKILKDEMNKEieaarRQFQS 630
Cdd:TIGR01612 696 AKLDDLKSKIDKEYDKIQNMEtATVELHLSNIENKKNELLDIIVEIKKHIHG-EINKDLNKILEDFKNKE-----KELSN 769
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 631 QLADLQQLPDILKITEAKLAECQDQLQgyERKNIDLTaiisdlrsriehqgdKLEMAREKHQASQKENKQLSLKVDELER 710
Cdd:TIGR01612 770 KINDYAKEKDELNKYKSKISEIKNHYN--DQINIDNI---------------KDEDAKQNYDKSKEYIKTISIKEDEIFK 832
|
330
....*....|....*...
gi 1191704925 711 KLEATSAQNIEFLQVIAK 728
Cdd:TIGR01612 833 IINEMKFMKDDFLNKVDK 850
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
158-457 |
5.38e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 158 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERqmAKRFLEERKEELEEVAHEL--AETEHENTVLRHNIERMKEEKDFTILQ 235
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 236 KKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDintlTRQKELLLQKLSTFEETNRTLRDLLRE 315
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE----AKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 316 QHCKEDSERLMEQQGAL----LKRLAEADSEKARLLLLLQDKDKEVEELLQEiqcEKAQAKTASELSKSMESMRGHLQaQ 391
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK---EAEEAKKAEELKKKEAEEKKKAE-E 1720
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191704925 392 LRSKEAENSrlcMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEE 457
Cdd:PTZ00121 1721 LKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
618-839 |
5.95e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 618 NKEIEAARRQFQSQLADLQQlpdilkiteaKLAECQDQLQGYERKN--IDLTAIISDLRSRIEHQGDKLEMAREKHQASQ 695
Cdd:COG3206 170 REEARKALEFLEEQLPELRK----------ELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 696 KenkqlslKVDELERKLEATSAQNIEFLQ--VIAKREEAIHQSQLRLEEKTRECG--------------TLARQLESAIE 759
Cdd:COG3206 240 A-------RLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTpnhpdvialraqiaALRAQLQQEAQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 760 DARRQVEQTKEHALSKERAAQNKILDLETQ---LSRTKTELSQLRRSRDDADRRYQSrlqdLKDRLEQSESTNRSMQNYV 836
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARlaeLPELEAELRRLEREVEVARELYES----LLQRLEEARLAEALTVGNV 388
|
...
gi 1191704925 837 QFL 839
Cdd:COG3206 389 RVI 391
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
648-800 |
7.19e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 7.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 648 KLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQ-----NIEF 722
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1191704925 723 LQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQL 800
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
501-702 |
8.53e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 501 IIVLNDRVTDLVNQQQTLEEKMREDRDsLVERLHRQTAEysafklENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG 580
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNK-NIEEQRKKNGE------NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 581 MIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDemNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYE 660
Cdd:PHA02562 249 DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK--GGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1191704925 661 RKNIDLTAI---ISDLRSRIEHQGDKLEMAREKHQASQKENKQLS 702
Cdd:PHA02562 327 EIMDEFNEQskkLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
206-632 |
1.14e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 206 HELAETEHENTVLRHNIERMKEEKDF--TILQKKHLQQEKECLMSKLVEAEmdgaaaaKQVMALKDtigkLKTEKQMTCT 283
Cdd:COG4717 102 EELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLEELE-------ERLEELRE----LEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 284 DINTLTRQKELLLQKLStfeetnrtLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQD--KDKEVEELL 361
Cdd:COG4717 171 ELAELQEELEELLEQLS--------LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQleNELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 362 QEIQCEKAQAKTAS----------ELSKSMESMRGHLQAQL-------RSKEAENSRLCMQIKNLERSGNQHKAEVEAIM 424
Cdd:COG4717 243 ERLKEARLLLLIAAallallglggSLLSLILTIAGVLFLVLgllallfLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 425 EQLKELKQKGDRDKESLKKAIRAQKE------RAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVvkekgdle 498
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIEElqellrEAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-------- 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 499 leiivlnDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEysAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY 578
Cdd:COG4717 395 -------EEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1191704925 579 EGmidnyKSQVMKTRLEADEVAAQLERCDKE---NKILKDEMNKEIEAARRQFQSQL 632
Cdd:COG4717 466 EE-----DGELAELLQELEELKAELRELAEEwaaLKLALELLEEAREEYREERLPPV 517
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
635-826 |
1.66e-03 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 41.17 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 635 LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEA 714
Cdd:pfam00261 3 MQQIKEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRRIQLLEEELERTEERLAEALEKLEEAEKAADESERGRKV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 715 TSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLesaiedarRQVEQTKEHALSKERAAQNKILDLETQLSRTK 794
Cdd:pfam00261 83 LENRALKDEEKMEILEAQLKEAKEIAEEADRKYEEVARKL--------VVVEGDLERAEERAELAESKIVELEEELKVVG 154
|
170 180 190
....*....|....*....|....*....|....*
gi 1191704925 795 TELSQLRRSRDDADR---RYQSRLQDLKDRLEQSE 826
Cdd:pfam00261 155 NNLKSLEASEEKASEredKYEEQIRFLTEKLKEAE 189
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
353-485 |
1.82e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 353 KDKEVEELLQEIQcEKAQAKTASELSK-SMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK 431
Cdd:PRK09039 51 KDSALDRLNSQIA-ELADLLSLERQGNqDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEK 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1191704925 432 QKGDRDKESLK------KAIRAQKERAEK----SEEYAEQLHVQLAD--KDLYVAEA--LSTLESWRS 485
Cdd:PRK09039 130 QVSARALAQVEllnqqiAALRRQLAALEAaldaSEKRDRESQAKIADlgRRLNVALAqrVQELNRYRS 197
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
223-494 |
1.87e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 223 ERMKEEKdFTILQKKHLQQEKECLMS------KLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEL-- 294
Cdd:pfam17380 286 ERQQQEK-FEKMEQERLRQEKEEKAReverrrKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELer 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 295 -LLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKT 373
Cdd:pfam17380 365 iRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 374 ASELS--KSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQ-LKELKQKG----------DRDKES 440
Cdd:pfam17380 445 AREMErvRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKeLEERKQAMieeerkrkllEKEMEE 524
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1191704925 441 LKKAIRAQKERAEKSEEYAEQLHVQLADKdlyVAEALSTLESWRSRYNQVVKEK 494
Cdd:pfam17380 525 RQKAIYEEERRREAEEERRKQQEMEERRR---IQEQMRKATEERSRLEAMERER 575
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
232-468 |
2.05e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 232 TILQKKHLQQEkeclmskLVEAEMD-GAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLlQKLSTFEETNRTLR 310
Cdd:PRK10929 21 TAPDEKQITQE-------LEQAKAAkTPAQAEIVEALQSALNWLEERKG-------SLERAKQYQ-QVIDNFPKLSAELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 311 DLLREQHCKEDSERLMEQQGALLKRLAEADS---EKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-SELSKSMESMRG 386
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTDALEQEILQVSSqllEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQlNEIERRLQTLGT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 387 ----HLQAQLRSKEAENSRLCMQIKNLER---SGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKER-AEKSEEY 458
Cdd:PRK10929 166 pntpLAQAQLTALQAESAALKALVDELELaqlSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQReAERALES 245
|
250
....*....|
gi 1191704925 459 AEQLHVQLAD 468
Cdd:PRK10929 246 TELLAEQSGD 255
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
379-638 |
2.31e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 379 KSMESMRGHLQAQLRSKEAENSRLcMQIKnlERSGNQHKAE--VEAIMEQLkeLKQKGDRDKESLKKAIRAQKERAEKSE 456
Cdd:COG3206 114 ASREAAIERLRKNLTVEPVKGSNV-IEIS--YTSPDPELAAavANALAEAY--LEQNLELRREEARKALEFLEEQLPELR 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 457 EYAEQLHVQLADkdlYVAEA-LSTLESwrsRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLhr 535
Cdd:COG3206 189 KELEEAEAALEE---FRQKNgLVDLSE---EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL-- 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 536 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMID--------NYKSQVMKTRLEADEVAAQLERCD 607
Cdd:COG3206 261 QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQqeaqrilaSLEAELEALQAREASLQAQLAQLE 340
|
250 260 270
....*....|....*....|....*....|....*..
gi 1191704925 608 KENKILKD------EMNKEIEAARRQFQSQLADLQQL 638
Cdd:COG3206 341 ARLAELPEleaelrRLEREVEVARELYESLLQRLEEA 377
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
290-550 |
2.39e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 290 RQKELLLQKLSTFEETNRTLRDLLRE-QHCKEDSERLMEQQGALLKRLAEA-DSEKARLLLLLQDKDKEVEELLQEIQCE 367
Cdd:pfam12128 622 AAEEQLVQANGELEKASREETFARTAlKNARLDLRRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAQLKQLDKKHQAW 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 368 KAQAK-TASELSKSMESMRGHLQAQLRSKEAensRLCMQIKNLErsgNQHKAEVEAIMEQLK-ELKQKG-DRDKES-LKK 443
Cdd:pfam12128 702 LEEQKeQKREARTEKQAYWQVVEGALDAQLA---LLKAAIAARR---SGAKAELKALETWYKrDLASLGvDPDVIAkLKR 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 444 AIR---AQKERAEKSEEYAEQLHVQLAdkdlyvaealstlESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEE 520
Cdd:pfam12128 776 EIRtleRKIERIAVRRQEVLRYFDWYQ-------------ETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRA 842
|
250 260 270
....*....|....*....|....*....|
gi 1191704925 521 KMREDRDSLVERLHRQTAEYSAFKLENERL 550
Cdd:pfam12128 843 KLEMERKASEKQQVRLSENLRGLRCEMSKL 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
319-524 |
2.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 319 KEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAE 398
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 399 NSRlcmQIKNLERSGNQHKAEV-------EAIMEQLKELKQKGDRDKESLkKAIRAQKERAEKSEEYAEQLHVQLADKDL 471
Cdd:COG4942 106 LAE---LLRALYRLGRQPPLALllspedfLDAVRRLQYLKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1191704925 472 YVAEALSTLESWRSRYNQVVKEkgdLELEIIVLNDRVTDLVNQQQTLEEKMRE 524
Cdd:COG4942 182 ELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
406-770 |
4.04e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 406 IKNLERSGNQHKAEVEAIMEQLKELKqkgdrdkeslkKAIRAQKERAEKSEEYAEqlhvqladkdlyvaEALSTLESWRS 485
Cdd:pfam06160 109 LDELLESEEKNREEVEELKDKYRELR-----------KTLLANRFSYGPAIDELE--------------KQLAEIEEEFS 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 486 RYNQVvKEKGD-LELEIIVLNdrvtdLVNQQQTLEEKMrEDRDSLVERLHrqtaeySAFKLENERLKASFAPMEDKlnQA 564
Cdd:pfam06160 164 QFEEL-TESGDyLEAREVLEK-----LEEETDALEELM-EDIPPLYEELK------TELPDQLEELKEGYREMEEE--GY 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 565 HLEVQQLKASVKNYEGMIDNYKSQVmkTRLEADEVAAQLERCDKENKILKDEMNKEIEAaRRQFQSQLA----DLQQLPD 640
Cdd:pfam06160 229 ALEHLNVDKEIQQLEEQLEENLALL--ENLELDEAEEALEEIEERIDQLYDLLEKEVDA-KKYVEKNLPeiedYLEHAEE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 641 ILKITEAKLAECQD-----------------QLQGYERKNIDLTAII-------SDLRSRIEHQGDKLEMAREKH----- 691
Cdd:pfam06160 306 QNKELKEELERVQQsytlnenelervrglekQLEELEKRYDEIVERLeekevaySELQEELEEILEQLEEIEEEQeefke 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 692 --QASQKENKQLSLKVDELERKLEAT----SAQNI-----EFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIED 760
Cdd:pfam06160 386 slQSLRKDELEAREKLDEFKLELREIkrlvEKSNLpglpeSYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLDEAQDD 465
|
410
....*....|
gi 1191704925 761 ARRQVEQTKE 770
Cdd:pfam06160 466 VDTLYEKTEE 475
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
332-714 |
4.19e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 332 LLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKtasELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLER 411
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWE---RQRRELESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 412 SGNQHKAEVEAIMEQLKELKQK---GDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDlyvaealSTLESWRSRYN 488
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAHEARireLEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEE-------AERKQLQAKLQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 489 QVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERlHRQTAeysafklENERLKASFAPMEDKLNQAHLEV 568
Cdd:pfam07888 182 QTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTA-HRKEA-------ENEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 569 QQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAK 648
Cdd:pfam07888 254 EGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEER 333
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1191704925 649 LAECQDQLQGYErknIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDEL---ERKLEA 714
Cdd:pfam07888 334 LQEERMEREKLE---VELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELleyIRQLEQ 399
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
164-626 |
4.42e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 164 KKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEK 243
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 244 -ECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdintltRQKELLLQKLSTFEETNRTLRDLLREQHCKEDS 322
Cdd:PTZ00121 1446 aDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA----------KKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 323 ERLMEQQGALLKRLAE----ADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLqaqlrSKEAE 398
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE-----AKKAE 1590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 399 NSRLCMQIKNLERSgNQHKAEvEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALS 478
Cdd:PTZ00121 1591 EARIEEVMKLYEEE-KKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 479 TLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQ----TLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASF 554
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkkkEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1191704925 555 APMEDKLNQahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLErCDKENKILKDEMNKEIEAARR 626
Cdd:PTZ00121 1749 AKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME-VDKKIKDIFDNFANIIEGGKE 1816
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
446-838 |
4.50e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 4.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 446 RAQKERAEKSEEYAEQLHVQLADKDLYVAEaLSTLESWRSRY---NQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKM 522
Cdd:COG3096 781 AAREKRLEELRAERDELAEQYAKASFDVQK-LQRLHQAFSQFvggHLAVAFAPDPEAELAALRQRRSELERELAQHRAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 523 ---REDRDSLVER---LHRQTAEYSAFKLE--NERLKASFAPMeDKLNQAHLEVQQLKASVKNYEGMIDNYKSqvmkTRL 594
Cdd:COG3096 860 qqlRQQLDQLKEQlqlLNKLLPQANLLADEtlADRLEELREEL-DAAQEAQAFIQQHGKALAQLEPLVAVLQS----DPE 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 595 EADEVAAQLERCDKENKILKdemnKEIEA-----ARR---------QFQSQLADL-QQLPDILKITEAKLAECQDQLQGY 659
Cdd:COG3096 935 QFEQLQADYLQAKEQQRRLK----QQIFAlsevvQRRphfsyedavGLLGENSDLnEKLRARLEQAEEARREAREQLRQA 1010
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 660 ERKNIDLTAIISDLRSRiehqgdkLEMAREKHQASQKENKQLSLKVD------------ELERKLEATSAQNIEFLQVIA 727
Cdd:COG3096 1011 QAQYSQYNQVLASLKSS-------RDAKQQTLQELEQELEELGVQADaeaeerarirrdELHEELSQNRSRRSQLEKQLT 1083
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 728 KREEAIHQSQLRLeektrecgtlaRQLESAIEDARRQVEQTKEHALSKERAAQNKilDLETQLSRTKT------ELSQLR 801
Cdd:COG3096 1084 RCEAEMDSLQKRL-----------RKAERDYKQEREQVVQAKAGWCAVLRLARDN--DVERRLHRRELaylsadELRSMS 1150
|
410 420 430
....*....|....*....|....*....|....*..
gi 1191704925 802 RSRDDADRRYQSRLQDLKDRLEQSEStNRSMQNYVQF 838
Cdd:COG3096 1151 DKALGALRLAVADNEHLRDALRLSED-PRRPERKVQF 1186
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
207-532 |
5.11e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 207 ELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTctDIN 286
Cdd:TIGR02169 717 KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 287 TLTRQKELLLQKLSTFEETNRTL-RDLLREQHCKEDSERLMEQqgaLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIq 365
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIeQKLNRLTLEKEYLEKEIQE---LQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL- 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 366 cEKAQAKTaselsKSMESMRGHLQAQLRSKEAensrlcmQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAI 445
Cdd:TIGR02169 871 -EELEAAL-----RDLESRLGDLKKERDELEA-------QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 446 RAQKERAEKSEEYAEQLHVQLadKDLYVAEALSTLESwrsrynqvVKEKGDLELEIIVlnDRVTDLVNQQQTLEekmrED 525
Cdd:TIGR02169 938 DPKGEDEEIPEEELSLEDVQA--ELQRVEEEIRALEP--------VNMLAIQEYEEVL--KRLDELKEKRAKLE----EE 1001
|
....*..
gi 1191704925 526 RDSLVER 532
Cdd:TIGR02169 1002 RKAILER 1008
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
326-482 |
5.15e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 326 MEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ---AQLRSKEAENSRL 402
Cdd:COG1579 2 MPEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEleiEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 403 CMQIKNLErsgnqhkaEVEAIMEQLKELKqkgdRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLES 482
Cdd:COG1579 82 LGNVRNNK--------EYEALQKEIESLK----RRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
214-666 |
5.26e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 40.59 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 214 ENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAE---MDGAAAAKQVMALKDTIgkLKTEKQMTcTDINTLTR 290
Cdd:PTZ00440 729 KYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDkdlPDGKNTYEEFLQYKDTI--LNKENKIS-NDINILKE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 291 QKELLLQKLSTFEETNRTLRDLLREQHckEDSERLMEQQGALLKRLAEADSEKarlllLLQDKDKEVEELLQEIQCEKAQ 370
Cdd:PTZ00440 806 NKKNNQDLLNSYNILIQKLEAHTEKND--EELKQLLQKFPTEDENLNLKELEK-----EFNENNQIVDNIIKDIENMNKN 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 371 AKTASELSKSMESMRGHLQAqlrskeaensrlcmqIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKE 450
Cdd:PTZ00440 879 INIIKTLNIAINRSNSNKQL---------------VEHLLNNKIDLKNKLEQHMKIINTDNIIQKNEKLNLLNNLNKEKE 943
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 451 RAEK--SEEYAEQLHVQLADKDLYVAEA-----------LSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQt 517
Cdd:PTZ00440 944 KIEKqlSDTKINNLKMQIEKTLEYYDKSkeningndgthLEKLDKEKDEWEHFKSEIDKLNVNYNILNKKIDDLIKKQH- 1022
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 518 leEKMREDRDSLVERLHRQTAEYSAFKLEN-ERLKASFAPME-------DKLNQAHLEVQQLKASVKNYEGMIDNYKSQV 589
Cdd:PTZ00440 1023 --DDIIELIDKLIKEKGKEIEEKVDQYISLlEKMKTKLSSFHfnidikkYKNPKIKEEIKLLEEKVEALLKKIDENKNKL 1100
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1191704925 590 MKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDIL-KITEAKLAECQdqlqgYERKNIDL 666
Cdd:PTZ00440 1101 IEIKNKSHEHVVNADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDiTLNEVNEIEIE-----YERILIDH 1173
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
379-800 |
5.84e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 379 KSMESMRGHLQAQLRSKEAEnsrlcmqIKNLERSGNQHKAEVEAIMEQLKELKQ-----------------KGDRDKESL 441
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKE-------LKNLDKNLNKDEEKINNSNNKIKILEQqikdlndklkknkdkinKLNSDLSKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 442 KKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEAL-------STLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQ 514
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLteikkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 515 QQTLEEKMREDRDSLVErLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRL 594
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSN-LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 595 EADEVAAQLERCDKENKILKDEMNK---EIEAARRQFQSQLadLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIIS 671
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQKEQDW--NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 672 DLRSRIEHqgdklemarekhqaSQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQsqlrLEEKTRECGTLA 751
Cdd:TIGR04523 346 QLKKELTN--------------SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND----LESKIQNQEKLN 407
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1191704925 752 RQLESAIEDARRQVEQ-TKEHALSKERAAQNK--ILDLETQLSRTKTELSQL 800
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELlEKEIERLKETIIKNNseIKDLTNQDSVKELIIKNL 459
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
201-774 |
6.03e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 201 LEEVAHELAETEhentvlrhniermkeekdftilqkkhlqqekeclmSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQM 280
Cdd:PRK02224 253 LETLEAEIEDLR-----------------------------------ETIAETEREREELAEEVRDLRERLEELEEERDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 281 TCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREqhCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEEl 360
Cdd:PRK02224 298 LLAEAGLDDADAEAVEARREELEDRDEELRDRLEE--CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 361 lqeiqCEKAQAKTASELSKsmesmrghLQAQLRSKEAENSRLCMQIKNLErsgnqhkAEVEAIMEQLKELKQKgdrdKES 440
Cdd:PRK02224 375 -----AREAVEDRREEIEE--------LEEEIEELRERFGDAPVDLGNAE-------DFLEELREERDELRER----EAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 441 LKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLN---DRVTDLVNQQQT 517
Cdd:PRK02224 431 LEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEerlERAEDLVEAEDR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 518 LeEKMREDRDSLVERLHRQTAEysafkLENERLKAsfapmedklnqahlevQQLKASVKNYEGMIDNYKSQVMKTRLEAD 597
Cdd:PRK02224 511 I-ERLEERREDLEELIAERRET-----IEEKRERA----------------EELRERAAELEAEAEEKREAAAEAEEEAE 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 598 EVAAQLERCDKEnkilKDEMNKEIEAARRqFQSQLADLQQLpdilkitEAKLAECQDQLQGYERKNIDLTAIISDLRSRI 677
Cdd:PRK02224 569 EAREEVAELNSK----LAELKERIESLER-IRTLLAAIADA-------EDEIERLREKREALAELNDERRERLAEKRERK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 678 -----EHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQ------NIEFLQVIAKREEAIHQSQLRLEEKTRE 746
Cdd:PRK02224 637 releaEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigavenELEELEELRERREALENRVEALEALYDE 716
|
570 580
....*....|....*....|....*...
gi 1191704925 747 cgtlARQLESAIEDARRQVEQTKEHALS 774
Cdd:PRK02224 717 ----AEELESMYGDLRAELRQRNVETLE 740
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
206-769 |
7.22e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 7.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 206 HELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEmdgaaaakqvmALKDTIGKLKTEKQMTCTDI 285
Cdd:PRK01156 204 KQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKN-----------RYESEIKTAESDLSMELEKN 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 286 NTLTRQKELLLQKLSTFEETNRT-LRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQD---KDKEVEELL 361
Cdd:PRK01156 273 NYYKELEERHMKIINDPVYKNRNyINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDyikKKSRYDDLN 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 362 QEIQCEKAQAKTASELSKSMESmrghLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESL 441
Cdd:PRK01156 353 NQILELEGYEMDYNSYLKSIES----LKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 442 KKAIRAQKERAEKSEEYAEQLHVQ----LADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQT 517
Cdd:PRK01156 429 NQRIRALRENLDELSRNMEMLNGQsvcpVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 518 LEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASfapmEDKLNQAHLEVQQLKasvknyegmIDNYKSQvmktRLEAD 597
Cdd:PRK01156 509 LESEEINKSINEYNKIESARADLEDIKIKINELKDK----HDKYEEIKNRYKSLK---------LEDLDSK----RTSWL 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 598 EVAAQLERCDKEN-KILKDEMNKEIEAARRQFQSQLADlqqLPDILKITEAKLAECQDQLQGYERKN---IDLTAIISDL 673
Cdd:PRK01156 572 NALAVISLIDIETnRSRSNEIKKQLNDLESRLQEIEIG---FPDDKSYIDKSIREIENEANNLNNKYneiQENKILIEKL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 674 RSRIEHQgdKLEMAREKhqASQKENKQLSLKVDELERKLEATSaqnieflqviaKREEAIHQSQLRLEEKTRECGTLARQ 753
Cdd:PRK01156 649 RGKIDNY--KKQIAEID--SIIPDLKEITSRINDIEDNLKKSR-----------KALDDAKANRARLESTIEILRTRINE 713
|
570
....*....|....*.
gi 1191704925 754 LESAIEDARRQVEQTK 769
Cdd:PRK01156 714 LSDRINDINETLESMK 729
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
258-444 |
7.47e-03 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 40.05 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 258 AAAAKQVMALKDTIGKLKTEKQmtctdINTLTRQKELLLQKLSTFEETNRTLRDLLREQhckedsERLMEQQGALL--KR 335
Cdd:COG4192 68 VAALPEFAAATNTTERSQLRNQ-----LNTQLADIEELLAELEQLTQDAGDLRAAVADL------RNLLQQLDSLLtqRI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 336 LAEADSEKA--RLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENsrlcmQIKNL--ER 411
Cdd:COG4192 137 ALRRRLQELleQINWLHQDFNSELTPLLQEASWQQTRLLDSVETTESLRNLQNELQLLLRLLAIEN-----QIVSLlrEV 211
|
170 180 190
....*....|....*....|....*....|...
gi 1191704925 412 SGNQHKAEVEAIMEQLKELKQKGDRDKESLKKA 444
Cdd:COG4192 212 AAARDQADVDNLFDRLQYLKDELDRNLQALKNY 244
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
287-634 |
7.93e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 287 TLTRQKELLLQKLSTFEETNRTLR-----------DLLREQHCKEDSERLMEQQGALLK-RLAEADSE------------ 342
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRaemedlvsskdDVGKNVHELERSKRALEQQVEEMKtQLEELEDElqatedaklrle 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 343 ------KARLLLLLQDKD-----------KEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRS-----KEA--E 398
Cdd:pfam01576 720 vnmqalKAQFERDLQARDeqgeekrrqlvKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAankgrEEAvkQ 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 399 NSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGD-------RDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDL 471
Cdd:pfam01576 800 LKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKnleaellQLQEDLAASERARRQAQQERDELADEIASGASGKSA 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 472 yVAEALSTLESwrsRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDR------DSLVERLHRQTAEYSA--- 542
Cdd:pfam01576 880 -LQDEKRRLEA---RIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERstsqksESARQQLERQNKELKAklq 955
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 543 ---------FKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKIL 613
Cdd:pfam01576 956 emegtvkskFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQL 1035
|
410 420
....*....|....*....|....*..
gi 1191704925 614 K------DEMNKEIEAARRQFQSQLAD 634
Cdd:pfam01576 1036 KrqleeaEEEASRANAARRKLQRELDD 1062
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
313-460 |
8.99e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 39.40 E-value: 8.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 313 LREQHCKEDSERLMEQQGALLKRLAEADSEK-ARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQ 391
Cdd:PRK09510 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERlAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191704925 392 LRSKEAENSRLCM-QIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAE 460
Cdd:PRK09510 160 AKKAAAEAKKKAEaEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
|
|
| |
