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Conserved domains on  [gi|1190246666|ref|NP_001338304|]
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small ribosomal subunit protein uS14 isoform 3 [Homo sapiens]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 2116)

uS14 family ribosomal protein such as bacterial 30S ribosomal protein S14, and eukaryotic 40S ribosomal protein S29

Gene Ontology:  GO:0003735

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsN super family cl00355
30S ribosomal protein S14; Reviewed
 19-53 3.96e-17

30S ribosomal protein S14; Reviewed


The actual alignment was detected with superfamily member PTZ00218:

Pssm-ID: 469739  Cd Length: 54  Bit Score: 66.63  E-value: 3.96e-17
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1190246666 19 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 53
Cdd:PTZ00218  20 RVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 19-53 3.96e-17

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 66.63  E-value: 3.96e-17
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1190246666 19 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 53
Cdd:PTZ00218  20 RVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 19-51 1.10e-06

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 40.08  E-value: 1.10e-06
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1190246666 19 RVCSNRHGLIRKYGlnMCRQCFRQYAKD---IGFIK 51
Cdd:pfam00253 19 RLTGRPRGVIRKFG--LCRICFRELALKgeiPGVKK 52
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 19-53 3.96e-17

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 66.63  E-value: 3.96e-17
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1190246666 19 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 53
Cdd:PTZ00218  20 RVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 19-53 2.18e-11

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 51.82  E-value: 2.18e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 1190246666 19 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 53
Cdd:PRK05766  18 QRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 19-51 1.10e-06

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 40.08  E-value: 1.10e-06
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1190246666 19 RVCSNRHGLIRKYGlnMCRQCFRQYAKD---IGFIK 51
Cdd:pfam00253 19 RLTGRPRGVIRKFG--LCRICFRELALKgeiPGVKK 52
rpsN PRK08061
type Z 30S ribosomal protein S14;
19-44 6.57e-03

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 30.61  E-value: 6.57e-03
                         10        20
                 ....*....|....*....|....*.
gi 1190246666 19 RVCSNRHGLIRKYGlnMCRQCFRQYA 44
Cdd:PRK08061  25 ERCGRPHSVYRKFG--LCRICFRELA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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