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Conserved domains on  [gi|1169640584|ref|NP_001336876|]
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small ribosomal subunit protein eS27 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S27e super family cl00897
Ribosomal protein S27;
1-50 6.15e-31

Ribosomal protein S27;


The actual alignment was detected with superfamily member PLN00209:

Pssm-ID: 445165  Cd Length: 86  Bit Score: 102.19  E-value: 6.15e-31
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1169640584  1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 50
Cdd:PLN00209  35 MDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
 
Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 1-50 6.15e-31

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 102.19  E-value: 6.15e-31
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1169640584  1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 50
Cdd:PLN00209  35 MDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
Ribosomal_S27e pfam01667
Ribosomal protein S27;
1-50 8.42e-22

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 78.27  E-value: 8.42e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1169640584  1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 50
Cdd:pfam01667  6 LDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 3-41 5.47e-10

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 48.73  E-value: 5.47e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1169640584  3 VKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 41
Cdd:COG2051   15 VKCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
 
Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 1-50 6.15e-31

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 102.19  E-value: 6.15e-31
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1169640584  1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 50
Cdd:PLN00209  35 MDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
PTZ00083 PTZ00083
40S ribosomal protein S27; Provisional
 1-50 1.07e-29

40S ribosomal protein S27; Provisional


Pssm-ID: 185434  Cd Length: 85  Bit Score: 98.97  E-value: 1.07e-29
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1169640584  1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 50
Cdd:PTZ00083  34 MDVKCPGCSQITTVFSHAQTVVLCGGCSSQLCQPTGGKAKLTEGCSFRRK 83
Ribosomal_S27e pfam01667
Ribosomal protein S27;
1-50 8.42e-22

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 78.27  E-value: 8.42e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1169640584  1 MDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 50
Cdd:pfam01667  6 LDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 3-41 5.47e-10

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 48.73  E-value: 5.47e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1169640584  3 VKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 41
Cdd:COG2051   15 VKCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
rps27e PRK00415
30S ribosomal protein S27e; Reviewed
 3-41 2.68e-09

30S ribosomal protein S27e; Reviewed


Pssm-ID: 179013  Cd Length: 59  Bit Score: 46.82  E-value: 2.68e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1169640584  3 VKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 41
Cdd:PRK00415  12 VKCPDCGNEQVVFSHASTVVRCLVCGKTLAEPTGGKAKI 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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