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Conserved domains on  [gi|1160595254|ref|NP_001336422|]
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PX domain-containing protein kinase-like protein isoform i [Homo sapiens]

Protein Classification

PX domain-containing protein kinase-like protein( domain architecture ID 10160724)

PX domain-containing protein kinase-like protein, also called MONaKA (Modulator of Na,K-ATPase), binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PX_MONaKA cd06871
The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain ...
13-132 7.23e-81

The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


:

Pssm-ID: 132781  Cd Length: 120  Bit Score: 249.20  E-value: 7.23e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  13 LLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSLQIAGLSLPLPPKKLIGNMDREFIAER 92
Cdd:cd06871     1 LLDDTVPLTCVIEASQNIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISGISLPLPPKKLIGNMDREFIAER 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1160595254  93 QKGLQNYLNVITTNHILSNCELVKKFLDPNNYSANYTEIA 132
Cdd:cd06871    81 QQGLQNYLNVILMNPILASCLPVKKFLDPNNYSANFTEIA 120
PKc_like super family cl21453
Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the ...
198-345 1.50e-09

Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases, and choline kinases. These proteins catalyze the transfer of the gamma-phosphoryl group from ATP to hydroxyl groups in specific substrates such as serine, threonine, or tyrosine residues of proteins.


The actual alignment was detected with superfamily member cd00180:

Pssm-ID: 473864 [Multi-domain]  Cd Length: 215  Bit Score: 58.05  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYIYRVTFATANESSALLIRMFNEKGTLKDLIYKakpkdpflkkycnpkKIQGLELQQIKTYGRQILEVLK 277
Cdd:cd00180    42 IEILKKLNHPNIVKLYDVFETENFLYLVMEYCEGGSLKDLLKE---------------NKGPLSEEEALSILRQLLSALE 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 278 FLHDKGFPYGHLHASNVMLDGD---------TCRLLDLENSLLGLPSFYRSYF----SQFRKINTLESVDVHCFGHLLYE 344
Cdd:cd00180   107 YLHSNGIIHRDLKPENILLDSDgtvkladfgLAKDLDSDDSLLKTTGGTTPPYyappELLGGRYYGPKVDIWSLGVILYE 186

                  .
gi 1160595254 345 M 345
Cdd:cd00180   187 L 187
 
Name Accession Description Interval E-value
PX_MONaKA cd06871
The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain ...
13-132 7.23e-81

The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


Pssm-ID: 132781  Cd Length: 120  Bit Score: 249.20  E-value: 7.23e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  13 LLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSLQIAGLSLPLPPKKLIGNMDREFIAER 92
Cdd:cd06871     1 LLDDTVPLTCVIEASQNIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISGISLPLPPKKLIGNMDREFIAER 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1160595254  93 QKGLQNYLNVITTNHILSNCELVKKFLDPNNYSANYTEIA 132
Cdd:cd06871    81 QQGLQNYLNVILMNPILASCLPVKKFLDPNNYSANFTEIA 120
PX pfam00787
PX domain; PX domains bind to phosphoinositides.
44-122 8.11e-16

PX domain; PX domains bind to phosphoinositides.


Pssm-ID: 459940  Cd Length: 84  Bit Score: 72.66  E-value: 8.11e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  44 ISVENSWQIVRRYSDFDLLNNSLQ--IAGLSLP-LPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLD 120
Cdd:pfam00787   3 TFSLEEWSVRRRYSDFVELHKKLLrkFPSVIIPpLPPKRWLGRYNEEFIEKRRKGLEQYLQRLLQHPELRNSEVLLEFLE 82

                  ..
gi 1160595254 121 PN 122
Cdd:pfam00787  83 SD 84
PX smart00312
PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function ...
32-120 3.69e-14

PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.


Pssm-ID: 214610  Cd Length: 105  Bit Score: 68.52  E-value: 3.69e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254   32 SHTEYIIRVQRGISVEnSWQIVRRYSDFDLLNNSLQ--IAGLSLP-LPPKKLIG---NMDREFIAERQKGLQNYLNVITT 105
Cdd:smart00312  11 KHYYYVIEIETKTGLE-EWTVSRRYSDFLELHSKLKkhFPRSILPpLPGKKLFGrlnNFSEEFIEKRRRGLEKYLQSLLN 89
                           90
                   ....*....|....*.
gi 1160595254  106 N-HILSNCELVKKFLD 120
Cdd:smart00312  90 HpELINHSEVVLEFLE 105
PKc cd00180
Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group ...
198-345 1.50e-09

Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.


Pssm-ID: 270622 [Multi-domain]  Cd Length: 215  Bit Score: 58.05  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYIYRVTFATANESSALLIRMFNEKGTLKDLIYKakpkdpflkkycnpkKIQGLELQQIKTYGRQILEVLK 277
Cdd:cd00180    42 IEILKKLNHPNIVKLYDVFETENFLYLVMEYCEGGSLKDLLKE---------------NKGPLSEEEALSILRQLLSALE 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 278 FLHDKGFPYGHLHASNVMLDGD---------TCRLLDLENSLLGLPSFYRSYF----SQFRKINTLESVDVHCFGHLLYE 344
Cdd:cd00180   107 YLHSNGIIHRDLKPENILLDSDgtvkladfgLAKDLDSDDSLLKTTGGTTPPYyappELLGGRYYGPKVDIWSLGVILYE 186

                  .
gi 1160595254 345 M 345
Cdd:cd00180   187 L 187
SPS1 COG0515
Serine/threonine protein kinase [Signal transduction mechanisms];
260-369 4.37e-07

Serine/threonine protein kinase [Signal transduction mechanisms];


Pssm-ID: 440281 [Multi-domain]  Cd Length: 482  Bit Score: 52.71  E-value: 4.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 260 LELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGD-TCRLLDL-------------ENSLLGLPsfyrSYFS--Q 323
Cdd:COG0515   104 LPPAEALRILAQLAEALAAAHAAGIVHRDIKPANILLTPDgRVKLIDFgiaralggatltqTGTVVGTP----GYMApeQ 179
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1160595254 324 FRKINTLESVDVHCFGHLLYEMTYGRPPdsvpvdsFPPAPSMAVVA 369
Cdd:COG0515   180 ARGEPVDPRSDVYSLGVTLYELLTGRPP-------FDGDSPAELLR 218
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
198-351 6.94e-06

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 47.91  E-value: 6.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  198 IKLLPSCLHPYIYRVTFATANESSALLIrM-FNEKGTLKDLIYKAKPkdpflkkycnpkkiqgLELQQIKTYGRQILEVL 276
Cdd:smart00220  48 IKILKKLKHPNIVRLYDVFEDEDKLYLV-MeYCEGGDLFDLLKKRGR----------------LSEDEARFYLRQILSAL 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  277 KFLHDKGFPYGHLHASNVMLDGDT---------CRLLDLE---NSLLGLPsFYRS-------YFSqfrkintlESVDVHC 337
Cdd:smart00220 111 EYLHSKGIVHRDLKPENILLDEDGhvkladfglARQLDPGeklTTFVGTP-EYMApevllgkGYG--------KAVDIWS 181
                          170
                   ....*....|....
gi 1160595254  338 FGHLLYEMTYGRPP 351
Cdd:smart00220 182 LGVILYELLTGKPP 195
COG5391 COG5391
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ...
33-119 9.36e-06

Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];


Pssm-ID: 227680 [Multi-domain]  Cd Length: 524  Bit Score: 48.25  E-value: 9.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  33 HTEY-IIRVQRGISVENS----WQIVRRYSDFDLLNNSL--QIAGLSLP-LPPKKLI-----GNMDREFIAERQKGLQNY 99
Cdd:COG5391   151 HTSYeIITVTNLPSFQLResrpLVVRRRYSDFESLHSILikLLPLCAIPpLPSKKSNseyygDRFSDEFIEERRQSLQNF 230
                          90       100
                  ....*....|....*....|
gi 1160595254 100 LNVITTNHILSNCELVKKFL 119
Cdd:COG5391   231 LRRVSTHPLLSNYKNSKSWE 250
 
Name Accession Description Interval E-value
PX_MONaKA cd06871
The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain ...
13-132 7.23e-81

The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


Pssm-ID: 132781  Cd Length: 120  Bit Score: 249.20  E-value: 7.23e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  13 LLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSLQIAGLSLPLPPKKLIGNMDREFIAER 92
Cdd:cd06871     1 LLDDTVPLTCVIEASQNIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISGISLPLPPKKLIGNMDREFIAER 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1160595254  93 QKGLQNYLNVITTNHILSNCELVKKFLDPNNYSANYTEIA 132
Cdd:cd06871    81 QQGLQNYLNVILMNPILASCLPVKKFLDPNNYSANFTEIA 120
PX_domain cd06093
The Phox Homology domain, a phosphoinositide binding module; The PX domain is a ...
31-120 1.47e-21

The Phox Homology domain, a phosphoinositide binding module; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.


Pssm-ID: 132768 [Multi-domain]  Cd Length: 106  Bit Score: 89.72  E-value: 1.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  31 QSHTEYIIRVQrgISVENSWQIVRRYSDFDLLNNSLQ--IAGLSLP-LPPKKLIGNMDREFIAERQKGLQNYLNVITTNH 107
Cdd:cd06093    15 KKYVVYIIEVT--TQGGEEWTVYRRYSDFEELHEKLKkkFPGVILPpLPPKKLFGNLDPEFIEERRKQLEQYLQSLLNHP 92
                          90
                  ....*....|...
gi 1160595254 108 ILSNCELVKKFLD 120
Cdd:cd06093    93 ELRNSEELKEFLE 105
PX_SNX16 cd07276
The phosphoinositide binding Phox Homology domain of Sorting Nexin 16; The PX domain is a ...
34-119 9.55e-17

The phosphoinositide binding Phox Homology domain of Sorting Nexin 16; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.


Pssm-ID: 132809  Cd Length: 110  Bit Score: 76.29  E-value: 9.55e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  34 TEYIIRVQRgiSVENSWQIVRRYSDFDLLNNSL--QIAGLSLPLPPKKLIG-NMDREFIAERQKGLQNYLNVITTNHILS 110
Cdd:cd07276    21 TVYKIRVEN--KVGDSWFVFRRYTDFVRLNDKLkqMFPGFRLSLPPKRWFKdNFDPDFLEERQLGLQAFVNNIMAHKDIA 98

                  ....*....
gi 1160595254 111 NCELVKKFL 119
Cdd:cd07276    99 KCKLVREFF 107
PX pfam00787
PX domain; PX domains bind to phosphoinositides.
44-122 8.11e-16

PX domain; PX domains bind to phosphoinositides.


Pssm-ID: 459940  Cd Length: 84  Bit Score: 72.66  E-value: 8.11e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  44 ISVENSWQIVRRYSDFDLLNNSLQ--IAGLSLP-LPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLD 120
Cdd:pfam00787   3 TFSLEEWSVRRRYSDFVELHKKLLrkFPSVIIPpLPPKRWLGRYNEEFIEKRRKGLEQYLQRLLQHPELRNSEVLLEFLE 82

                  ..
gi 1160595254 121 PN 122
Cdd:pfam00787  83 SD 84
PX_SNX8_Mvp1p_like cd06866
The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p; The PX ...
33-119 2.66e-14

The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.


Pssm-ID: 132776  Cd Length: 105  Bit Score: 69.18  E-value: 2.66e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  33 HTEYIIRVQRGISvenswQIVRRYSDFDLLNNSLQ---IAGLSLPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHIL 109
Cdd:cd06866    18 HVEYEVSSKRFKS-----TVYRRYSDFVWLHEYLLkryPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVARHPVL 92
                          90
                  ....*....|
gi 1160595254 110 SNCELVKKFL 119
Cdd:cd06866    93 SEDELVRTFL 102
PX smart00312
PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function ...
32-120 3.69e-14

PhoX homologous domain, present in p47phox and p40phox; Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.


Pssm-ID: 214610  Cd Length: 105  Bit Score: 68.52  E-value: 3.69e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254   32 SHTEYIIRVQRGISVEnSWQIVRRYSDFDLLNNSLQ--IAGLSLP-LPPKKLIG---NMDREFIAERQKGLQNYLNVITT 105
Cdd:smart00312  11 KHYYYVIEIETKTGLE-EWTVSRRYSDFLELHSKLKkhFPRSILPpLPGKKLFGrlnNFSEEFIEKRRRGLEKYLQSLLN 89
                           90
                   ....*....|....*.
gi 1160595254  106 N-HILSNCELVKKFLD 120
Cdd:smart00312  90 HpELINHSEVVLEFLE 105
PX_IRAS cd06875
The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor ...
19-101 2.35e-13

The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected; The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132785  Cd Length: 116  Bit Score: 66.53  E-value: 2.35e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  19 PLTAAIEASQSLQSHTEYIIRVQRGisvENSWQIVRRYSDFDLLNNSLqIAGLSLP---LPPKKLIGNMDREFIAERQKG 95
Cdd:cd06875     3 ETKIRIPSAETVEGYTVYIIEVKVG---SVEWTVKHRYSDFAELHDKL-VAEHKVDkdlLPPKKLIGNKSPSFVEKRRKE 78

                  ....*.
gi 1160595254  96 LQNYLN 101
Cdd:cd06875    79 LEIYLQ 84
PX_RUN cd07277
The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX ...
48-142 4.10e-13

The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.


Pssm-ID: 132810  Cd Length: 118  Bit Score: 66.22  E-value: 4.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  48 NSWQIVRRYSDFDLLNNSLQ----IAGlSLPLPPKKLIGNMDREFIAERQKGLQNYLNVItTNHILSNCElvkkfldpnN 123
Cdd:cd07277    30 DEWNVYRRYSEFYELHKKLKkkfpVVR-SFDFPPKKAIGNKDAKFVEERRKRLQVYLRRV-VNTLIQTSP---------E 98
                          90
                  ....*....|....*....
gi 1160595254 124 YSANYTEIALQQVSMFFRS 142
Cdd:cd07277    99 LTACPSKETLIKLLPFFGD 117
PX_SNX13 cd06873
The phosphoinositide binding Phox Homology domain of Sorting Nexin 13; The PX domain is a ...
36-121 9.91e-13

The phosphoinositide binding Phox Homology domain of Sorting Nexin 13; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, through the RGS domain. It preferentially binds phosphatidylinositol-3-phosphate (PI3P) through the PX domain and is localized in early endosomes. SNX13 is involved in endosomal sorting of EGFR into multivesicular bodies (MVB) for delivery to the lysosome.


Pssm-ID: 132783  Cd Length: 120  Bit Score: 64.98  E-value: 9.91e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  36 YIIRVQR--GISVENSWQIVRRYSDFDLLNNSL--QIAGLS-LPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILS 110
Cdd:cd06873    25 YAISVTRiyPNGQEESWHVYRRYSDFHDLHMRLkeKFPNLSkLSFPGKKTFNNLDRAFLEKRRKMLNQYLQSLLNPEVLD 104
                          90
                  ....*....|....*
gi 1160595254 111 NC----ELVKKFLDP 121
Cdd:cd06873   105 ANpglqEIVLDFLEP 119
PX_SNX14 cd06877
The phosphoinositide binding Phox Homology domain of Sorting Nexin 14; The PX domain is a ...
36-122 5.35e-12

The phosphoinositide binding Phox Homology domain of Sorting Nexin 14; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs.


Pssm-ID: 132787  Cd Length: 119  Bit Score: 62.78  E-value: 5.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  36 YIIRVQRGISVEN-----SWQIVRRYSDFDLLNNSL-QIAGLS--LPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNH 107
Cdd:cd06877    25 FCIEVERNDRRAKghepqHWSVLRRYNEFYVLESKLtEFHGEFpdAPLPSRRIFGPKSYEFLESKREIFEEFLQKLLQKP 104
                          90
                  ....*....|....*
gi 1160595254 108 ILSNCELVKKFLDPN 122
Cdd:cd06877   105 ELRGSELLYDFLSPN 119
PX_CISK cd06870
The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase; The ...
49-119 1.34e-11

The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.


Pssm-ID: 132780  Cd Length: 109  Bit Score: 61.27  E-value: 1.34e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1160595254  49 SWQIVRRYSDFDLLNNSL--QIAGLSLPLPPKKLIG-NMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd06870    33 SWFVFRRYAEFDKLYESLkkQFPASNLKIPGKRLFGnNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFL 106
PX_SNX41_42 cd06867
The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42; The PX ...
31-122 4.23e-11

The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back to the late Golgi in yeast.


Pssm-ID: 132777  Cd Length: 112  Bit Score: 59.96  E-value: 4.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  31 QSHTEYIIRVQRGisvenswQIVRRYSDFDLLNNSLQIAGLSL---PLPPKKLIGNM---------DREFIAERQKGLQN 98
Cdd:cd06867    16 GSYIVYVIRLGGS-------EVKRRYSEFESLRKNLTRLYPTLiipPIPEKHSLKDYakkpskaknDAKIIERRKRMLQR 88
                          90       100
                  ....*....|....*....|....
gi 1160595254  99 YLNVITTNHILSNCELVKKFLDPN 122
Cdd:cd06867    89 FLNRCLQHPILRNDIVFQKFLDPN 112
PX_YPT35 cd07280
The phosphoinositide binding Phox Homology domain of the fungal protein YPT35; The PX domain ...
38-121 1.19e-10

The phosphoinositide binding Phox Homology domain of the fungal protein YPT35; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.


Pssm-ID: 132813  Cd Length: 120  Bit Score: 58.88  E-value: 1.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  38 IRVQRGISVENSWQIVRRYSDFDLLNNSLQI-----AGLSLP-LPPKKLI----GNMDREFIAERQKGLQNYLNVITTNH 107
Cdd:cd07280    27 ITIETKDLIGSSIVAYKRYSEFVQLREALLDefprhKRNEIPqLPPKVPWydsrVNLNKAWLEKRRRGLQYFLNCVLLNP 106
                          90
                  ....*....|....
gi 1160595254 108 ILSNCELVKKFLDP 121
Cdd:cd07280   107 VFGGSPVVKEFLLP 120
PX_KIF16B_SNX23 cd06874
The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23; The ...
28-141 2.68e-10

The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132784  Cd Length: 127  Bit Score: 58.16  E-value: 2.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  28 QSLQSHTEYIIRVQrgiSVENSWQIVRRYSDFDLLNNSLQ---IAGLSLPLPPKKLIGNMDREFIAERQKGLQNYL-NVI 103
Cdd:cd06874    13 QGKDEHFEFEVKIT---VLDETWTVFRRYSRFRELHKTMKlkyPEVAALEFPPKKLFGNKSERVAKERRRQLETYLrNFF 89
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1160595254 104 TTNHILSNCELVKKfldpnnYSANYTEIALQQVSMFFR 141
Cdd:cd06874    90 SVCLKLPACPLYPK------VGRTLSKATLCDFSPFFR 121
PX_SNX10 cd06898
The phosphoinositide binding Phox Homology domain of Sorting Nexin 10; The PX domain is a ...
54-114 3.47e-10

The phosphoinositide binding Phox Homology domain of Sorting Nexin 10; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.


Pssm-ID: 132808  Cd Length: 113  Bit Score: 57.34  E-value: 3.47e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160595254  54 RRYSDFDLLNNSLQ-IAGLSL--PLPPKKLIGNM-DREFIAERQKGLQNYLN-VITTNHILSNCEL 114
Cdd:cd06898    41 RRYSEFVWLRNRLQkNALLIQlpSLPPKNLFGRFnNEGFIEERQQGLQDFLEkVLQTPLLLSDSRL 106
PKc cd00180
Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group ...
198-345 1.50e-09

Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.


Pssm-ID: 270622 [Multi-domain]  Cd Length: 215  Bit Score: 58.05  E-value: 1.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYIYRVTFATANESSALLIRMFNEKGTLKDLIYKakpkdpflkkycnpkKIQGLELQQIKTYGRQILEVLK 277
Cdd:cd00180    42 IEILKKLNHPNIVKLYDVFETENFLYLVMEYCEGGSLKDLLKE---------------NKGPLSEEEALSILRQLLSALE 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 278 FLHDKGFPYGHLHASNVMLDGD---------TCRLLDLENSLLGLPSFYRSYF----SQFRKINTLESVDVHCFGHLLYE 344
Cdd:cd00180   107 YLHSNGIIHRDLKPENILLDSDgtvkladfgLAKDLDSDDSLLKTTGGTTPPYyappELLGGRYYGPKVDIWSLGVILYE 186

                  .
gi 1160595254 345 M 345
Cdd:cd00180   187 L 187
PX_SNARE cd06897
The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi; The PX domain ...
25-120 5.57e-09

The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.


Pssm-ID: 132807  Cd Length: 108  Bit Score: 53.82  E-value: 5.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  25 EASQSLQSHTEYIIRVQrgiSVENSWQIVRRYSDFDLLNNSLQ-IAGLSLP--LPPKKLIGNM--DREFIAERQKGLQNY 99
Cdd:cd06897     7 TTSVSPKPYTVYNIQVR---LPLRSYTVSRRYSEFVALHKQLEsEVGIEPPypLPPKSWFLSTssNPKLVEERRVGLEAF 83
                          90       100
                  ....*....|....*....|...
gi 1160595254 100 LNVI--TTNHILSNCELVKKFLD 120
Cdd:cd06897    84 LRALlnDEDSRWRNSPAVKEFLN 106
PX_SNX1_2_like cd06859
The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is ...
30-119 8.26e-09

The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex.


Pssm-ID: 132769 [Multi-domain]  Cd Length: 114  Bit Score: 53.74  E-value: 8.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  30 LQSHTEYIIRVQRGISV--ENSWQIVRRYSDFDLLNNSLQ---IAGLSLPLPPKKLIG--NMDREFIAERQKGLQNYLNV 102
Cdd:cd06859    15 MSAYVVYRVTTKTNLPDfkKSEFSVLRRYSDFLWLYERLVekyPGRIVPPPPEKQAVGrfKVKFEFIEKRRAALERFLRR 94
                          90
                  ....*....|....*..
gi 1160595254 103 ITTNHILSNCELVKKFL 119
Cdd:cd06859    95 IAAHPVLRKDPDFRLFL 111
PX_SNX7_30_like cd06860
The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30; The PX domain is ...
33-119 1.97e-08

The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of the sorting nexins in this subfamily has yet to be elucidated.


Pssm-ID: 132770  Cd Length: 116  Bit Score: 52.72  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  33 HTEYIIRvqrgisvenswqivRRYSDFDLLNNSLQIAGLSL---PLPPKK-LIGNMDR---EFIAERQKGLQNYLNVITT 105
Cdd:cd06860    34 SSEYSVR--------------RRYQDFLWLRQKLEESHPTHiipPLPEKHsVKGLLDRfspEFVATRMRALHKFLNRIVE 99
                          90
                  ....*....|....
gi 1160595254 106 NHILSNCELVKKFL 119
Cdd:cd06860   100 HPVLSFNEHLKVFL 113
PX_SNX20_21_like cd07279
The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21; The PX domain ...
37-119 3.36e-08

The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


Pssm-ID: 132812  Cd Length: 112  Bit Score: 51.94  E-value: 3.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  37 IIRVQRGISVENSWQIVRRYSDFDLLNNSLQ------IAGLSLPlpPKKLIGNMDREFIAERQKGLQNYLNVITTNHILS 110
Cdd:cd07279    23 LAVVQTGDPDTQPAFIERRYSDFLKLYKALRkqhpqlMAKVSFP--RKVLMGNFSSELIAERSRAFEQFLGHILSIPNLR 100

                  ....*....
gi 1160595254 111 NCELVKKFL 119
Cdd:cd07279   101 DSKAFLDFL 109
PX_Vps5p cd06861
The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p; The PX domain ...
32-119 7.05e-08

The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P). Similar to SNX1, Vps5p contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1.


Pssm-ID: 132771  Cd Length: 112  Bit Score: 50.81  E-value: 7.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  32 SHTEYIIRVQRGISVE--NSWQIVRRYSDFDLLNNSLQI--AGLSLPLPP-KKLIGNMDREFIAERQKGLQNYLNVITTN 106
Cdd:cd06861    17 AHTVYTVRTRTTSPNFevSSFSVLRRYRDFRWLYRQLQNnhPGVIVPPPPeKQSVGRFDDNFVEQRRAALEKMLRKIANH 96
                          90
                  ....*....|...
gi 1160595254 107 HILSNCELVKKFL 119
Cdd:cd06861    97 PVLQKDPDFRLFL 109
PK_eIF2AK_GCN2_rpt1 cd14012
Pseudokinase domain, repeat 1, of eukaryotic translation Initiation Factor 2-Alpha Kinase 4 or ...
189-394 2.76e-07

Pseudokinase domain, repeat 1, of eukaryotic translation Initiation Factor 2-Alpha Kinase 4 or General Control Non-derepressible-2; The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. EIF2AKs phosphorylate the alpha subunit of eIF-2, resulting in the overall downregulation of protein synthesis. eIF-2 phosphorylation is induced in response to cellular stresses including virus infection, heat shock, nutrient deficiency, and the accummulation of unfolded proteins, among others. There are four distinct kinases that phosphorylate eIF-2 and control protein synthesis under different stress conditions: GCN2, protein kinase regulated by RNA (PKR), heme-regulated inhibitor kinase (HRI), and PKR-like endoplasmic reticulum kinase (PERK). GCN2 is activated by amino acid or serum starvation and UV irradiation. It induces GCN4, a transcriptional activator of amino acid biosynthetic genes, leading to increased production of amino acids under amino acid-deficient conditions. In serum-starved cells, GCN2 activation induces translation of the stress-responsive transcription factor ATF4, while under UV stress, GCN2 triggers transcriptional rescue via NF-kappaB signaling. GCN2 contains an N-terminal RWD, a degenerate kinase-like (repeat 1), the catalytic kinase (repeat 2), a histidyl-tRNA synthetase (HisRS)-like, and a C-terminal ribosome-binding and dimerization (RB/DD) domains. The degenerate pseudokinase domain of GCN2 may function as a regulatory domain. The GCN2 subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270914 [Multi-domain]  Cd Length: 254  Bit Score: 51.98  E-value: 2.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 189 LSDKDFQCLIKLL-PSCLHPYIYRVTFATanESSALLIRMFNE---KGTLKDLIYKAKPkdpflkkycnpkkiqgLELQQ 264
Cdd:cd14012    44 LLEKELESLKKLRhPNLVSYLAFSIERRG--RSDGWKVYLLTEyapGGSLSELLDSVGS----------------VPLDT 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 265 IKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGD----TCRLLD------------------LENSLLGLPSFYRSYFS 322
Cdd:cd14012   106 ARRWTLQLLEALEYLHRNGVVHKSLHAGNVLLDRDagtgIVKLTDyslgktlldmcsrgsldeFKQTYWLPPELAQGSKS 185
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1160595254 323 QFRKintlesVDVHCFGHLLYEMTYGRP-------PDSVPVdsfPPAPSMAVVAVLESTLSCEACKNgmPTISRLLQMP 394
Cdd:cd14012   186 PTRK------TDVWDLGLLFLQMLFGLDvlekytsPNPVLV---SLDLSASLQDFLSKCLSLDPKKR--PTALELLPHE 253
PX_SNX4 cd06864
The phosphoinositide binding Phox Homology domain of Sorting Nexin 4; The PX domain is a ...
54-119 4.04e-07

The phosphoinositide binding Phox Homology domain of Sorting Nexin 4; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and the long form of the leptin receptor.


Pssm-ID: 132774  Cd Length: 129  Bit Score: 49.29  E-value: 4.04e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1160595254  54 RRYSDFDLLNNSLQI---AGLSLPLPPKKL--------IGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd06864    50 RRYSEFELLRNYLVVtypYVIVPPLPEKRAmfmwqklsSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFL 126
SPS1 COG0515
Serine/threonine protein kinase [Signal transduction mechanisms];
260-369 4.37e-07

Serine/threonine protein kinase [Signal transduction mechanisms];


Pssm-ID: 440281 [Multi-domain]  Cd Length: 482  Bit Score: 52.71  E-value: 4.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 260 LELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGD-TCRLLDL-------------ENSLLGLPsfyrSYFS--Q 323
Cdd:COG0515   104 LPPAEALRILAQLAEALAAAHAAGIVHRDIKPANILLTPDgRVKLIDFgiaralggatltqTGTVVGTP----GYMApeQ 179
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1160595254 324 FRKINTLESVDVHCFGHLLYEMTYGRPPdsvpvdsFPPAPSMAVVA 369
Cdd:COG0515   180 ARGEPVDPRSDVYSLGVTLYELLTGRPP-------FDGDSPAELLR 218
PX_SNX18 cd07286
The phosphoinositide binding Phox Homology domain of Sorting Nexin 18; The PX domain is a ...
51-119 7.74e-07

The phosphoinositide binding Phox Homology domain of Sorting Nexin 18; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1.


Pssm-ID: 132819  Cd Length: 127  Bit Score: 48.51  E-value: 7.74e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1160595254  51 QIVRRYSDFDLLNNSL--QIAGLSLP-LPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd07286    33 QVHRRYKHFDWLYARLaeKFPVISVPhIPEKQATGRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFL 104
PX_MDM1p cd06876
The phosphoinositide binding Phox Homology domain of yeast MDM1p; The PX domain is a ...
24-101 1.11e-06

The phosphoinositide binding Phox Homology domain of yeast MDM1p; The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132786  Cd Length: 133  Bit Score: 48.07  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  24 IEASQSLQSHTEYIIRVQR--GISVENSWQIVRRYSDFDLLNNSL--QIAGL-SLPLPPKKLIG--NMDREFIAERQKGL 96
Cdd:cd06876    29 SDVEEEGKEFVVYLIEVQRlnNDDQSSGWVVARRYSEFLELHKYLkkRYPGVlKLDFPQKRKISlkYSKTLLVEERRKAL 108

                  ....*
gi 1160595254  97 QNYLN 101
Cdd:cd06876   109 EKYLQ 113
STKc_nPKC_theta_like cd05592
Catalytic domain of the Serine/Threonine Kinases, Novel Protein Kinase C theta, delta, and ...
160-351 1.42e-06

Catalytic domain of the Serine/Threonine Kinases, Novel Protein Kinase C theta, delta, and similar proteins; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. The nPKC-theta-like subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270744 [Multi-domain]  Cd Length: 320  Bit Score: 50.46  E-value: 1.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 160 RKKYFLMKIknqpkerlvlswadLGPDKYLSDKDFQC-LIK---LLPSCLHPYIYRVtFATANESSALLIRMFNEKGtlK 235
Cdd:cd05592    19 TNQYFAIKA--------------LKKDVVLEDDDVECtMIErrvLALASQHPFLTHL-FCTFQTESHLFFVMEYLNG--G 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 236 DLIYKAKPKDPFlkkycnpkkiqglELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGD---------TCRL-LD 305
Cdd:cd05592    82 DLMFHIQQSGRF-------------DEDRARFYGAEIICGLQFLHSRGIIYRDLKLDNVLLDREghikiadfgMCKEnIY 148
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1160595254 306 LEN---SLLGLPSFYRSYFSQFRKINtlESVDVHCFGHLLYEMTYGRPP 351
Cdd:cd05592   149 GENkasTFCGTPDYIAPEILKGQKYN--QSVDWWSFGVLLYEMLIGQSP 195
STKc_STK10 cd06644
Catalytic domain of the Serine/Threonine Kinase, STK10 (also called Lymphocyte-Oriented Kinase ...
146-306 2.22e-06

Catalytic domain of the Serine/Threonine Kinase, STK10 (also called Lymphocyte-Oriented Kinase or LOK); STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. STK10/LOK is also called polo-like kinase kinase 1 in Xenopus (xPlkk1). It is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 132975 [Multi-domain]  Cd Length: 292  Bit Score: 49.64  E-value: 2.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 146 WEVVEPLKDIGWRirKKYflmkiKNQPKERLVLSWADLGPDKYLSD-KDFQCLIKLLPSCLHPYIYRVTFATANESSALL 224
Cdd:cd06644    14 WEIIGELGDGAFG--KVY-----KAKNKETGALAAAKVIETKSEEElEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWI 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 225 IRMFNEKGTLKDLIYKAKpkdpflkkycnpkkiQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVML--DGDTcR 302
Cdd:cd06644    87 MIEFCPGGAVDAIMLELD---------------RGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLtlDGDI-K 150

                  ....
gi 1160595254 303 LLDL 306
Cdd:cd06644   151 LADF 154
PX_SNX25 cd06878
The phosphoinositide binding Phox Homology domain of Sorting Nexin 25; The PX domain is a ...
50-121 2.49e-06

The phosphoinositide binding Phox Homology domain of Sorting Nexin 25; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs.


Pssm-ID: 132788  Cd Length: 127  Bit Score: 46.98  E-value: 2.49e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1160595254  50 WQIVRRYSDFDLLNNSLQ-----IAGLSLPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLDP 121
Cdd:cd06878    50 WVVTRKLSEFHDLHRKLKecsswLKKVELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126
STKc_PknB_like cd14014
Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins; STKs ...
192-351 3.02e-06

Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270916 [Multi-domain]  Cd Length: 260  Bit Score: 49.12  E-value: 3.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 192 KDFQCLIKLLPSCLHPYIYRV-TFATANESSALLIRMFnEKGTLKDLIykakpkdpflkkycnpKKIQGLELQQIKTYGR 270
Cdd:cd14014    45 ERFLREARALARLSHPNIVRVyDVGEDDGRPYIVMEYV-EGGSLADLL----------------RERGPLPPREALRILA 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 271 QILEVLKFLHDKGFpyghLHA----SNVMLDGD-TCRLLDL-ENSLLGLPSFYRS--------YFS--QFRKINTLESVD 334
Cdd:cd14014   108 QIADALAAAHRAGI----VHRdikpANILLTEDgRVKLTDFgIARALGDSGLTQTgsvlgtpaYMApeQARGGPVDPRSD 183
                         170
                  ....*....|....*..
gi 1160595254 335 VHCFGHLLYEMTYGRPP 351
Cdd:cd14014   184 IYSLGVVLYELLTGRPP 200
PKc_STE cd05122
Catalytic domain of STE family Protein Kinases; PKs catalyze the transfer of the ...
198-351 3.08e-06

Catalytic domain of STE family Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine (ST) or tyrosine residues on protein substrates. This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPKK kinases (MAPKKKs), or MAPKKK kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. The STE family is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270692 [Multi-domain]  Cd Length: 254  Bit Score: 48.74  E-value: 3.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYI--YRVTFATANEssaLLIRM-FNEKGTLKDLiykakpkdpfLKKYCNPkkiqgLELQQIKTYGRQILE 274
Cdd:cd05122    48 IAILKKCKHPNIvkYYGSYLKKDE---LWIVMeFCSGGSLKDL----------LKNTNKT-----LTEQQIAYVCKEVLK 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 275 VLKFLHDKGFPYGHLHASNVML--DGDTcRLLD-----------LENSLLGLPsfyrSYFS--QFRKINTLESVDVHCFG 339
Cdd:cd05122   110 GLEYLHSHGIIHRDIKAANILLtsDGEV-KLIDfglsaqlsdgkTRNTFVGTP----YWMApeVIQGKPYGFKADIWSLG 184
                         170
                  ....*....|..
gi 1160595254 340 HLLYEMTYGRPP 351
Cdd:cd05122   185 ITAIEMAEGKPP 196
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
198-351 6.94e-06

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 47.91  E-value: 6.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  198 IKLLPSCLHPYIYRVTFATANESSALLIrM-FNEKGTLKDLIYKAKPkdpflkkycnpkkiqgLELQQIKTYGRQILEVL 276
Cdd:smart00220  48 IKILKKLKHPNIVRLYDVFEDEDKLYLV-MeYCEGGDLFDLLKKRGR----------------LSEDEARFYLRQILSAL 110
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  277 KFLHDKGFPYGHLHASNVMLDGDT---------CRLLDLE---NSLLGLPsFYRS-------YFSqfrkintlESVDVHC 337
Cdd:smart00220 111 EYLHSKGIVHRDLKPENILLDEDGhvkladfglARQLDPGeklTTFVGTP-EYMApevllgkGYG--------KAVDIWS 181
                          170
                   ....*....|....
gi 1160595254  338 FGHLLYEMTYGRPP 351
Cdd:smart00220 182 LGVILYELLTGKPP 195
STKc_nPKC_delta cd05620
Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C delta; STKs catalyze ...
260-416 7.64e-06

Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C delta; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. The nPKC-delta subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 173710 [Multi-domain]  Cd Length: 316  Bit Score: 48.02  E-value: 7.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 260 LELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGD-TCRLLDL----EN--------SLLGLPSFYRSYFSQFRK 326
Cdd:cd05620    93 FDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDgHIKIADFgmckENvfgdnrasTFCGTPDYIAPEILQGLK 172
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 327 INTleSVDVHCFGHLLYEMTYGRPP----------DSVPVDS--FPPAPSMAVVAVLESTLSCEACKNgMPTISRLLQMP 394
Cdd:cd05620   173 YTF--SVDWWSFGVLLYEMLIGQSPfhgddedelfESIRVDTphYPRWITKESKDILEKLFERDPTRR-LGVVGNIRGHP 249
                         170       180
                  ....*....|....*....|..
gi 1160595254 395 LFSDVLLTTSEKPQFKIPTKLK 416
Cdd:cd05620   250 FFKTINWTALEKRELDPPFKPK 271
COG5391 COG5391
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ...
33-119 9.36e-06

Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];


Pssm-ID: 227680 [Multi-domain]  Cd Length: 524  Bit Score: 48.25  E-value: 9.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  33 HTEY-IIRVQRGISVENS----WQIVRRYSDFDLLNNSL--QIAGLSLP-LPPKKLI-----GNMDREFIAERQKGLQNY 99
Cdd:COG5391   151 HTSYeIITVTNLPSFQLResrpLVVRRRYSDFESLHSILikLLPLCAIPpLPSKKSNseyygDRFSDEFIEERRQSLQNF 230
                          90       100
                  ....*....|....*....|
gi 1160595254 100 LNVITTNHILSNCELVKKFL 119
Cdd:COG5391   231 LRRVSTHPLLSNYKNSKSWE 250
STKc_SLK cd06643
Catalytic domain of the Serine/Threonine Kinase, Ste20-Like Kinase; STKs catalyze the transfer ...
143-314 1.33e-05

Catalytic domain of the Serine/Threonine Kinase, Ste20-Like Kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270811 [Multi-domain]  Cd Length: 283  Bit Score: 47.33  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 143 EPKWEVVEPLKDigwrirkKYFLMKIKNQPKERLVLSWADLGPDKYLSD-KDFQCLIKLLPSCLHPYIYRVTFATANESS 221
Cdd:cd06643     4 EDFWEIVGELGD-------GAFGKVYKAQNKETGILAAAKVIDTKSEEElEDYMVEIDILASCDHPNIVKLLDAFYYENN 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 222 ALLIRMFNEKGTLKDLIYKAKpkdpflkkycnpkkiQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVM--LDGD 299
Cdd:cd06643    77 LWILIEFCAGGAVDAVMLELE---------------RPLTEPQIRVVCKQTLEALVYLHENKIIHRDLKAGNILftLDGD 141
                         170       180
                  ....*....|....*....|....*.
gi 1160595254 300 -----------TCRLLDLENSLLGLP 314
Cdd:cd06643   142 ikladfgvsakNTRTLQRRDSFIGTP 167
PX_SNX7 cd07284
The phosphoinositide binding Phox Homology domain of Sorting Nexin 7; The PX domain is a ...
37-119 2.01e-05

The phosphoinositide binding Phox Homology domain of Sorting Nexin 7; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of SNX7 has yet to be elucidated.


Pssm-ID: 132817  Cd Length: 116  Bit Score: 44.20  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  37 IIRVQRGISVENSWQIVRRYSDFDLLNNSLQIAGLSLPLPP-------KKLIGNMDREFIAERQKGLQNYLNVITTNHIL 109
Cdd:cd07284    24 MTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPlpekfvmKGMVERFNEDFIETRRKALHKFLNRIADHPTL 103
                          90
                  ....*....|
gi 1160595254 110 SNCELVKKFL 119
Cdd:cd07284   104 TFNEDFKIFL 113
PX_SNX19_like_plant cd06872
The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins; ...
20-122 2.52e-05

The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.


Pssm-ID: 132782  Cd Length: 107  Bit Score: 43.66  E-value: 2.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  20 LTAAIEASQSlQSHTEYIIRVQrgiSVEN-SWQIVRRYSDFDLLNNSLQ-IAGLSLPLPPKKLIG-NMDREFIAERQKGL 96
Cdd:cd06872     6 LGAEIVKSGS-KSFAVYSVAVT---DNENeTWVVKRRFRNFETLHRRLKeVPKYNLELPPKRFLSsSLDGAFIEERCKLL 81
                          90       100
                  ....*....|....*....|....*.
gi 1160595254  97 QNYLNVITTNHILSNCELVKKFLDPN 122
Cdd:cd06872    82 DKYLKDLLVIEKVAESHEVWSFLSAR 107
PX_UP2_fungi cd06869
The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins; The PX ...
31-122 2.56e-05

The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins; The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.


Pssm-ID: 132779  Cd Length: 119  Bit Score: 43.81  E-value: 2.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  31 QSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSL--QIAGLSLPLPPKKLIGNMDREFIAERQkglqnYLNVITTNHI 108
Cdd:cd06869    31 KHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLkkEFPGKKLPKLPHKDKLPREKLRLSLRQ-----YLRSLLKDPE 105
                          90
                  ....*....|....
gi 1160595254 109 LSNCELVKKFLDPN 122
Cdd:cd06869   106 VAHSSILQEFLTSD 119
PX_SNX15_like cd06881
The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins; The PX ...
25-120 3.17e-05

The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily contain an additional C-terminal kinase domain, similar to human RPK118, which binds sphingosine kinase and the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of proteins such as PRDX3 from the cytoplasm to its site of function in the mitochondria.


Pssm-ID: 132791  Cd Length: 117  Bit Score: 43.46  E-value: 3.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  25 EASQSLQSHTEYII-------RVQRGISVENSWqivRRYSDF-----DL--LNNSLQIAGLSLPLPPKKLIGNMDREFIA 90
Cdd:cd06881     9 DTRRHKKGYTEYKItskvfsrSVPEDVSEVVVW---KRYSDFkklhrELsrLHKQLYLSGSFPPFPKGKYFGRFDAAVIE 85
                          90       100       110
                  ....*....|....*....|....*....|
gi 1160595254  91 ERQKGLQNYLNVITTNHILSNCELVKKFLD 120
Cdd:cd06881    86 ERRQAILELLDFVGNHPALYQSSAFQQFFE 115
PX_Atg24p cd06863
The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation ...
31-119 3.34e-05

The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.


Pssm-ID: 132773  Cd Length: 118  Bit Score: 43.43  E-value: 3.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  31 QSHTEYIIRVQRGISV--ENSWQIVRRYSDFDLLNNSLQ---IAGLSLPLPPKKLIGNM--DR---EFIAERQKGLQNYL 100
Cdd:cd06863    17 DTYISYLITTKTNLPSfsRKEFKVRRRYSDFVFLHECLSndfPACVVPPLPDKHRLEYItgDRfspEFITRRAQSLQRFL 96
                          90
                  ....*....|....*....
gi 1160595254 101 NVITTNHILSNCELVKKFL 119
Cdd:cd06863    97 RRISLHPVLSQSKILHQFL 115
PX_SNX20 cd07300
The phosphoinositide binding Phox Homology domain of Sorting Nexin 20; The PX domain is a ...
27-103 5.14e-05

The phosphoinositide binding Phox Homology domain of Sorting Nexin 20; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX domain of SNX20 binds PIs and targets the SNX20/PSGL-1 complex to endosomes. SNX20 may function in the sorting and cycling of PSGL-1 into endosomes.


Pssm-ID: 132833  Cd Length: 114  Bit Score: 42.88  E-value: 5.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  27 SQSLQSHTEY-IIRVQRGISVENSWQIVRRYSDFDLLNNSLqIAGLS-----LPLPPKKLIGNMDREFIAERQKGLQNYL 100
Cdd:cd07300    12 EQTISKHVVYqIIVIQTGSFDCNKVVIERRYSDFLKLHQEL-LSDFSeeledVVFPKKKLTGNFSEEIIAERRVALRDYL 90

                  ...
gi 1160595254 101 NVI 103
Cdd:cd07300    91 TLL 93
STKc_Nek cd08215
Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase; ...
198-396 6.01e-05

Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The Nek family is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270855 [Multi-domain]  Cd Length: 258  Bit Score: 44.76  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYI--YRVTFataNESSALLIRM-FNEKGTLKDLIYKAKPKDPFLKKycnpkkiqglelQQIKTYGRQILE 274
Cdd:cd08215    50 VKLLSKLKHPNIvkYYESF---EENGKLCIVMeYADGGDLAQKIKKQKKKGQPFPE------------EQILDWFVQICL 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 275 VLKFLHDKGFpyghLH----ASNVMLD-------GD--TCRLL----DLENSLLGLPsfYrsYFS----QFRKINtlESV 333
Cdd:cd08215   115 ALKYLHSRKI----LHrdlkTQNIFLTkdgvvklGDfgISKVLesttDLAKTVVGTP--Y--YLSpelcENKPYN--YKS 184
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1160595254 334 DVHCFGHLLYEMTYGRPP---DSVPV-------DSFPPAP---SMAVVAVLESTLSCEACKNgmPTISRLLQMPLF 396
Cdd:cd08215   185 DIWALGCVLYELCTLKHPfeaNNLPAlvykivkGQYPPIPsqySSELRDLVNSMLQKDPEKR--PSANEILSSPFI 258
STKc_PKC cd05570
Catalytic domain of the Serine/Threonine Kinase, Protein Kinase C; STKs catalyze the transfer ...
268-351 6.53e-05

Catalytic domain of the Serine/Threonine Kinase, Protein Kinase C; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270722 [Multi-domain]  Cd Length: 318  Bit Score: 45.28  E-value: 6.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 268 YGRQILEVLKFLHDKGFPYGHLHASNVMLDGDT-CRLLD------------LENSLLGLPSF-------YRSYFSqfrki 327
Cdd:cd05570   101 YAAEICLALQFLHERGIIYRDLKLDNVLLDAEGhIKIADfgmckegiwggnTTSTFCGTPDYiapeilrEQDYGF----- 175
                          90       100
                  ....*....|....*....|....
gi 1160595254 328 ntleSVDVHCFGHLLYEMTYGRPP 351
Cdd:cd05570   176 ----SVDWWALGVLLYEMLAGQSP 195
PX_SNX9 cd07285
The phosphoinositide binding Phox Homology domain of Sorting Nexin 9; The PX domain is a ...
30-120 6.82e-05

The phosphoinositide binding Phox Homology domain of Sorting Nexin 9; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. Through its SH3 domain, SNX9 binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis. Its array of interacting partners suggests that SNX9 functions at the interface between endocytosis and actin cytoskeletal organization.


Pssm-ID: 132818  Cd Length: 126  Bit Score: 42.70  E-value: 6.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  30 LQSHTEYIIrvqrgISVENSWQIVRRYSDFDLLNNSLQIA-GLSLP---LPPKKLIGNMDREFIAERQKGLQNYLNVITT 105
Cdd:cd07285    17 LKSYIEYQL-----TPTNTNRSVNHRYKHFDWLYERLLVKfGLAIPipsLPDKQVTGRFEEEFIKMRMERLQAWMTRMCR 91
                          90
                  ....*....|....*
gi 1160595254 106 NHILSNCELVKKFLD 120
Cdd:cd07285    92 HPVISESEVFQQFLN 106
STKc_WNK cd13983
Catalytic domain of the Serine/Threonine kinase, With No Lysine (WNK) kinase; STKs catalyze ...
192-351 8.22e-05

Catalytic domain of the Serine/Threonine kinase, With No Lysine (WNK) kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. WNKs comprise a subfamily of STKs with an unusual placement of a catalytic lysine relative to all other protein kinases. They are critical in regulating ion balance and are thus, important components in the control of blood pressure. They are also involved in cell signaling, survival, proliferation, and organ development. WNKs are activated by hyperosmotic or low-chloride hypotonic stress and they function upstream of SPAK and OSR1 kinases, which regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. There are four vertebrate WNKs which show varying expression patterns. WNK1 and WNK2 are widely expressed while WNK3 and WNK4 show a more restricted expression pattern. Because mutations in human WNK1 and WNK4 cause PseudoHypoAldosteronism type II (PHAII), characterized by hypertension (due to increased sodium reabsorption) and hyperkalemia (due to impaired renal potassium secretion), there are more studies conducted on these two proteins, compared to WNK2 and WNK3. The WNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270885 [Multi-domain]  Cd Length: 258  Bit Score: 44.52  E-value: 8.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 192 KDFQCLIKLLPSCLHPYIyrVTFATA----NESSALLIRMFNEKGTLKDLIykakpkdpflkkycnpKKIQGLELQQIKT 267
Cdd:cd13983    45 QRFKQEIEILKSLKHPNI--IKFYDSweskSKKEVIFITELMTSGTLKQYL----------------KRFKRLKLKVIKS 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 268 YGRQILEVLKFLHDKGFPYGH--LHASNVMLDGDT--CRLLDL----------ENSLLGLPSF-----YRSYFSqfrkin 328
Cdd:cd13983   107 WCRQILEGLNYLHTRDPPIIHrdLKCDNIFINGNTgeVKIGDLglatllrqsfAKSVIGTPEFmapemYEEHYD------ 180
                         170       180
                  ....*....|....*....|...
gi 1160595254 329 tlESVDVHCFGHLLYEMTYGRPP 351
Cdd:cd13983   181 --EKVDIYAFGMCLLEMATGEYP 201
STKc_MAPKKK cd06606
Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase ...
198-396 1.19e-04

Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270783 [Multi-domain]  Cd Length: 258  Bit Score: 44.05  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYIYRVtFATANESSALLIRM-FNEKGTLKDLIykakpkdpflkkycnpKKIQGLELQQIKTYGRQILEVL 276
Cdd:cd06606    50 IRILSSLKHPNIVRY-LGTERTENTLNIFLeYVPGGSLASLL----------------KKFGKLPEPVVRKYTRQILEGL 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 277 KFLHDKGFPYGHLHASNVMLDGD---------TCRLLDLENSLLGLPSFYRS-YF---------SQFRKintlesVDVHC 337
Cdd:cd06606   113 EYLHSNGIVHRDIKGANILVDSDgvvkladfgCAKRLAEIATGEGTKSLRGTpYWmapevirgeGYGRA------ADIWS 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 338 FGHLLYEMTYGRPP-----DSVPV-------DSFPPAPsmavvavleSTLSCEA------C----KNGMPTISRLLQMPL 395
Cdd:cd06606   187 LGCTVIEMATGKPPwselgNPVAAlfkigssGEPPPIP---------EHLSEEAkdflrkClqrdPKKRPTADELLQHPF 257

                  .
gi 1160595254 396 F 396
Cdd:cd06606   258 L 258
PX_SNX3_like cd06894
The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins; The ...
34-119 1.30e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.


Pssm-ID: 132804  Cd Length: 123  Bit Score: 42.06  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  34 TEYIIRVQRGISV----ENSwqIVRRYSDFDLLNNSL----QIAGLSLP-------LPPKKLIGNMDREFIAERQKGLQN 98
Cdd:cd06894    20 TDYEVRMRTNLPVfkkkESS--VRRRYSDFEWLRSELerdsKIVVPPLPgkalkrqLPFRGDDGIFEEEFIEERRKGLET 97
                          90       100
                  ....*....|....*....|.
gi 1160595254  99 YLNVITTNHILSNCELVKKFL 119
Cdd:cd06894    98 FINKVAGHPLAQNEKCLHMFL 118
STKc_nPKC_eta cd05590
Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C eta; STKs catalyze the ...
183-351 1.59e-04

Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C eta; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. The nPKC-eta subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270742 [Multi-domain]  Cd Length: 323  Bit Score: 44.13  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 183 LGPDKYLSDKDFQCLIK----LLPSCLHPYIYRVTFATANESSALLIRMFNEKGTLKDLIYKAKPKDPFLKKYcnpkkiq 258
Cdd:cd05590    28 LKKDVILQDDDVECTMTekriLSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARF------- 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 259 glelqqiktYGRQILEVLKFLHDKGFPYGHLHASNVMLDGDT-CRLLD------------LENSLLGLPSFYRSYFSQFR 325
Cdd:cd05590   101 ---------YAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGhCKLADfgmckegifngkTTSTFCGTPDYIAPEILQEM 171
                         170       180
                  ....*....|....*....|....*.
gi 1160595254 326 KINTleSVDVHCFGHLLYEMTYGRPP 351
Cdd:cd05590   172 LYGP--SVDWWAMGVLLYEMLCGHAP 195
PX_SNX3 cd07293
The phosphoinositide binding Phox Homology domain of Sorting Nexin 3; The PX domain is a ...
34-119 1.74e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 3; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. SNX3 is required for the formation of multivesicular bodies, which function as transport intermediates to late endosomes. It also promotes cell surface expression of the amiloride-sensitive epithelial Na+ channel (ENaC), which is critical in sodium homeostasis and maintenance of extracellular fluid volume.


Pssm-ID: 132826  Cd Length: 123  Bit Score: 41.52  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  34 TEYIIRVQRGISV--ENSWQIVRRYSDFDLLNNSLQIAGLSL--PLPPKKLI---------GNMDREFIAERQKGLQNYL 100
Cdd:cd07293    20 TTYEIRLKTNLPIfkLKESTVRRRYSDFEWLRSELERESKVVvpPLPGKALFrqlpfrgddGIFDDSFIEERKQGLEQFL 99
                          90
                  ....*....|....*....
gi 1160595254 101 NVITTNHILSNCELVKKFL 119
Cdd:cd07293   100 NKVAGHPLAQNERCLHMFL 118
PX_SNX_like cd06865
The phosphoinositide binding Phox Homology domain of SNX-like proteins; The PX domain is a ...
32-119 1.99e-04

The phosphoinositide binding Phox Homology domain of SNX-like proteins; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architecture as a subfamily of sorting nexins, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX-BAR structural unit is known to determine specific membrane localization.


Pssm-ID: 132775  Cd Length: 120  Bit Score: 41.25  E-value: 1.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  32 SHTEYIIRVQRGIS--VENSWQIVRRYSDFDLLNNSLQIA--GLSLPLPPKK----LIGNMDREFIAERQKGLQNYLNVI 103
Cdd:cd06865    22 PYISYKVTTRTNIPsyTHGEFTVRRRFRDVVALADRLAEAyrGAFVPPRPDKsvveSQVMQSAEFIEQRRVALEKYLNRL 101
                          90
                  ....*....|....*.
gi 1160595254 104 TTNHILSNCELVKKFL 119
Cdd:cd06865   102 AAHPVIGLSDELRVFL 117
PX_SNX9_18_like cd06862
The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18; The PX domain is ...
51-119 3.00e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1.


Pssm-ID: 132772  Cd Length: 125  Bit Score: 40.76  E-value: 3.00e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1160595254  51 QIVRRYSDFDLLNNSLqIAGLSL----PLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd06862    33 TVSRRYKHFDWLYERL-VEKYSCiaipPLPEKQVTGRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFL 104
PX_SNX30 cd07283
The phosphoinositide binding Phox Homology domain of Sorting Nexin 30; The PX domain is a ...
50-119 3.56e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 30; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of SNX30 has yet to be elucidated.


Pssm-ID: 132816  Cd Length: 116  Bit Score: 40.45  E-value: 3.56e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1160595254  50 WQIVRRYSDFDLLNNSL---QIAGLSLPLPPKKLI-GNMDR---EFIAERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd07283    37 YSVRRRYQDFDWLRNKLeesQPTHLIPPLPEKFVVkGVVDRfseEFVETRRKALDKFLKRIADHPVLSFNEHFNVFL 113
STKc_nPKC_theta cd05619
Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C theta; STKs catalyze ...
260-351 4.02e-04

Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C theta; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270770 [Multi-domain]  Cd Length: 331  Bit Score: 42.99  E-value: 4.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 260 LELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGDT-CRLLDL------------ENSLLGLPSFYRSYFSQFRK 326
Cdd:cd05619   103 FDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDKDGhIKIADFgmckenmlgdakTSTFCGTPDYIAPEILLGQK 182
                          90       100
                  ....*....|....*....|....*
gi 1160595254 327 INTleSVDVHCFGHLLYEMTYGRPP 351
Cdd:cd05619   183 YNT--SVDWWSFGVLLYEMLIGQSP 205
PX_SNX12 cd07294
The phosphoinositide binding Phox Homology domain of Sorting Nexin 12; The PX domain is a ...
54-128 4.46e-04

The phosphoinositide binding Phox Homology domain of Sorting Nexin 12; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.


Pssm-ID: 132827  Cd Length: 132  Bit Score: 40.41  E-value: 4.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  54 RRYSDFDLLNNSLQIAG--LSLPLPPKKLI---------GNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKFLDPN 122
Cdd:cd07294    44 RRYSDFEWLKNELERDSkiVVPPLPGKALKrqlpfrgdeGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDE 123

                  ....*.
gi 1160595254 123 NYSANY 128
Cdd:cd07294   124 TIDRNY 129
PX_PI3K_C2 cd06883
The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases; The ...
29-121 6.60e-04

The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a PX domain, and a second C2 domain at the C-terminus. Class II PI3Ks include three vertebrate isoforms (alpha, beta, and gamma), the Drosophila PI3K_68D, and similar proteins.


Pssm-ID: 132793  Cd Length: 109  Bit Score: 39.65  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  29 SLQSHTEYIIRVQRGISVENSWqIVRRYSDFDLLNNSLQIAGLSLPLPP---KKLIGNMDREFIAE-RQKGLQNYL-NVI 103
Cdd:cd06883    12 SPEKYYIYVVKVTRENQTEPSF-VFRTFEEFQELHNKLSLLFPSLKLPSfpaRVVLGRSHIKQVAErRKIELNSYLkSLF 90
                          90
                  ....*....|....*...
gi 1160595254 104 TTNHILSNCELVKKFLDP 121
Cdd:cd06883    91 NASPEVAESDLVYTFFHP 108
STKc_WNK4 cd14033
Catalytic domain of the Serine/Threonine protein kinase, With No Lysine (WNK) 4; STKs catalyze ...
248-353 7.82e-04

Catalytic domain of the Serine/Threonine protein kinase, With No Lysine (WNK) 4; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. WNK4 shows a restricted expression pattern and is usually found in epithelial cells. It is expressed in nephrons and in extrarenal tissues including intestine, eye, mammary glands, and prostate. WNK4 regulates a variety of ion transport proteins including apical or basolateral ion transporters, ion channels in the transcellular pathway, and claudins in the paracellular pathway. Mutations in WNK4 cause PseudoHypoAldosteronism type II (PHAII), characterized by hypertension and hyperkalemia. WNK4 inhibits the activity of the thiazide-sensitive Na-Cl cotransporter (NCC), which is responsible for about 15% of NaCl reabsorption in the kidney. It also inhibits the renal outer medullary potassium channel (ROMK) and decreases its surface expression. Hypertension and hyperkalemia in PHAII patients with WNK4 mutations may be partly due to increased NaCl reabsorption through NCC and impaired renal potassium secretion by ROMK, respectively. The WNK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270935 [Multi-domain]  Cd Length: 261  Bit Score: 41.53  E-value: 7.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 248 LKKYCnpKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGH--LHASNVMLDGDT--CRLLDLENSLLGLPSFYRSYFS- 322
Cdd:cd14033    91 LKTYL--KRFREMKLKLLQRWSRQILKGLHFLHSRCPPILHrdLKCDNIFITGPTgsVKIGDLGLATLKRASFAKSVIGt 168
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1160595254 323 ------QFRKINTLESVDVHCFGHLLYEMTYGRPPDS 353
Cdd:cd14033   169 pefmapEMYEEKYDEAVDVYAFGMCILEMATSEYPYS 205
STKc_cPKC_beta cd05616
Catalytic domain of the Serine/Threonine Kinase, Classical Protein Kinase C beta; STKs ...
268-351 8.11e-04

Catalytic domain of the Serine/Threonine Kinase, Classical Protein Kinase C beta; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG (1,2-diacylglycerol) in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG, and in most cases, phosphatidylserine (PS) for activation. The cPKC-beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270767 [Multi-domain]  Cd Length: 323  Bit Score: 41.91  E-value: 8.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 268 YGRQILEVLKFLHDKGFPYGHLHASNVMLDGD---------TCR--LLD--LENSLLGLPSFYRSYFSQFRKINtlESVD 334
Cdd:cd05616   106 YAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEghikiadfgMCKenIWDgvTTKTFCGTPDYIAPEIIAYQPYG--KSVD 183
                          90
                  ....*....|....*..
gi 1160595254 335 VHCFGHLLYEMTYGRPP 351
Cdd:cd05616   184 WWAFGVLLYEMLAGQAP 200
STKc_IRAK cd14066
Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases ...
190-351 8.60e-04

Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. IRAKs are involved in Toll-like receptor (TLR) and interleukin-1 (IL-1) signalling pathways, and are thus critical in regulating innate immune responses and inflammation. Some IRAKs may also play roles in T- and B-cell signaling, and adaptive immunity. Vertebrates contain four IRAKs (IRAK-1, -2, -3 (or -M), and -4) that display distinct functions and patterns of expression and subcellular distribution, and can differentially mediate TLR signaling. IRAK-1, -2, and -4 are ubiquitously expressed and are active kinases, while IRAK-M is only induced in monocytes and macrophages and is an inactive kinase. Variations in IRAK genes are linked to diverse diseases including infection, sepsis, cancer, and autoimmune diseases. IRAKs contain an N-terminal Death domain (DD), a proST region (rich in serines, prolines, and threonines), a central kinase domain (a pseudokinase domain in the case of IRAK3), and a C-terminal domain; IRAK-4 lacks the C-terminal domain. This subfamily includes plant receptor-like kinases (RLKs) including Arabidopsis thaliana BAK1 and CLAVATA1 (CLV1). BAK1 functions in BR (brassinosteroid)-regulated plant development and in pathways involved in plant resistance to pathogen infection and herbivore attack. CLV1, directly binds small signaling peptides, CLAVATA3 (CLV3) and CLAVATA3/EMBRYO SURROUNDING REGI0N (CLE), to restrict stem cell proliferation: the CLV3-CLV1-WUS (WUSCHEL) module influences stem cell maintenance in the shoot apical meristem, and the CLE40 (CLAVATA3/EMBRYO SURROUNDING REGION40) -ACR4 (CRINKLY4) -CLV1- WOX5 (WUSCHEL-RELATED HOMEOBOX5) module at the root apical meristem. The IRAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270968 [Multi-domain]  Cd Length: 272  Bit Score: 41.49  E-value: 8.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 190 SDKDFQCLIKLLPSCLHPYIYRV-TFATANESSaLLIRMFNEKGTLKDLIYKAKPKDPflkkycnpkkiqgLELQQIKTY 268
Cdd:cd14066    33 SKKEFLTELEMLGRLRHPNLVRLlGYCLESDEK-LLVYEYMPNGSLEDRLHCHKGSPP-------------LPWPQRLKI 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 269 GRQILEVLKFLHDKGFP---YGHLHASNVMLD-------GD--TCRLLDLENSLL------GLPSFYRSYFSQFRKINTl 330
Cdd:cd14066    99 AKGIARGLEYLHEECPPpiiHGDIKSSNILLDedfepklTDfgLARLIPPSESVSktsavkGTIGYLAPEYIRTGRVST- 177
                         170       180
                  ....*....|....*....|.
gi 1160595254 331 eSVDVHCFGHLLYEMTYGRPP 351
Cdd:cd14066   178 -KSDVYSFGVVLLELLTGKPA 197
PX_PLD cd06895
The phosphoinositide binding Phox Homology domain of Phospholipase D; The PX domain is a ...
36-120 1.05e-03

The phosphoinositide binding Phox Homology domain of Phospholipase D; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membranes while PLD2 is associated with plasma membranes. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.


Pssm-ID: 132805  Cd Length: 140  Bit Score: 39.67  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  36 YIIRVQRGisvENSWQIVRRYSDFDLLNNSLQI--AGLSLPLPPKKLI---GNMDREFIAE------------------- 91
Cdd:cd06895    26 YTIELQHG---QFTWTIKRRYKHFQELHQALKLyrALLRIPLPTRRHKeerLSLKRSRKPErekknrrlpslpalpdilv 102
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1160595254  92 -------RQKGLQNYLNVITTNHILSNCELVKKFLD 120
Cdd:cd06895   103 seeqldsRKKQLENYLQNLLKIPDYRNHPETLEFLE 138
STKc_MEKK1_plant cd06632
Catalytic domain of the Serine/Threonine Kinase, Plant Mitogen-Activated Protein (MAP) ...
198-351 1.14e-03

Catalytic domain of the Serine/Threonine Kinase, Plant Mitogen-Activated Protein (MAP)/Extracellular signal-Regulated Kinase (ERK) Kinase Kinase 1; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily is composed of plant MAPK kinase kinases (MAPKKKs) including Arabidopsis thaliana MEKK1 and MAPKKK3. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. MAPKKKs phosphorylate and activate MAPK kinases, which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270802 [Multi-domain]  Cd Length: 259  Bit Score: 40.85  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYIYRVtFATANESSALLIRM-FNEKGTLKDLiykakpkdpfLKKYcnpkkiQGLELQQIKTYGRQILEVL 276
Cdd:cd06632    53 IALLSKLRHPNIVQY-YGTEREEDNLYIFLeYVPGGSIHKL----------LQRY------GAFEEPVIRLYTRQILSGL 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 277 KFLHDKGFPYGHLHASNVMLDGD-TCRLLD------LENSLLGLpSFYRSYF-------SQFRKINTLEsVDVHCFGHLL 342
Cdd:cd06632   116 AYLHSRNTVHRDIKGANILVDTNgVVKLADfgmakhVEAFSFAK-SFKGSPYwmapeviMQKNSGYGLA-VDIWSLGCTV 193

                  ....*....
gi 1160595254 343 YEMTYGRPP 351
Cdd:cd06632   194 LEMATGKPP 202
PX_SNX19 cd06893
The phosphoinositide binding Phox Homology domain of Sorting Nexin 19; The PX domain is a ...
33-119 1.17e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexin 19; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found in type-1 diabetes. It inhibits the conversion of phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to PI(3,4,5)P3, which leads in the decrease of protein phosphorylation in the Akt signaling pathway, resulting in apoptosis. SNX19 may also be implicated in coronary heart disease and thyroid oncocytic tumors.


Pssm-ID: 132803 [Multi-domain]  Cd Length: 132  Bit Score: 39.45  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  33 HTEYIIRVQRGISVENSW-------------QIVRRYSDF----DLLNNSLQIAGLSLPLPPKKL-----IGNMDREFIA 90
Cdd:cd06893    21 YTLYTVQYETILDVQSEQnpnaaseqplathTVNRRFREFltlqTRLEENPKFRKIMNVKGPPKRlfdlpFGNMDKDKIE 100
                          90       100
                  ....*....|....*....|....*....
gi 1160595254  91 ERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd06893   101 ARRGLLETFLRQLCSIPEISNSEEVQEFL 129
PX_SNX21 cd07301
The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a ...
51-100 1.42e-03

The phosphoinositide binding Phox Homology domain of Sorting Nexin 21; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.


Pssm-ID: 132834  Cd Length: 112  Bit Score: 38.63  E-value: 1.42e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1160595254  51 QIVRRYSDFDLLNNSLQ------IAGLSLPLppKKLIGNMDREFIAERQKGLQNYL 100
Cdd:cd07301    37 YISRRYSDFERLHRRLRrlfggeMAGVSFPR--KRLRKNFTAETIAKRSRAFEQFL 90
STKc_EIF2AK cd13996
Catalytic domain of the Serine/Threonine kinase, eukaryotic translation Initiation Factor ...
198-300 1.53e-03

Catalytic domain of the Serine/Threonine kinase, eukaryotic translation Initiation Factor 2-Alpha Kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. EIF2AKs phosphorylate the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. eIF-2 phosphorylation is induced in response to cellular stresses including virus infection, heat shock, nutrient deficiency, and the accummulation of unfolded proteins, among others. There are four distinct kinases that phosphorylate eIF-2 and control protein synthesis under different stress conditions: General Control Non-derepressible-2 (GCN2) which is activated during amino acid or serum starvation; protein kinase regulated by RNA (PKR) which is activated by double stranded RNA; heme-regulated inhibitor kinase (HRI) which is activated under heme-deficient conditions; and PKR-like endoplasmic reticulum kinase (PERK) which is activated when misfolded proteins accumulate in the ER. The EIF2AK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270898 [Multi-domain]  Cd Length: 273  Bit Score: 40.74  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 198 IKLLPSCLHPYIYRVTFATAnESSALLIRM-FNEKGTLKDLIYKAkpkdpfLKKYCNPKKiqglelqQIKTYGRQILEVL 276
Cdd:cd13996    55 VKALAKLNHPNIVRYYTAWV-EEPPLYIQMeLCEGGTLRDWIDRR------NSSSKNDRK-------LALELFKQILKGV 120
                          90       100
                  ....*....|....*....|....
gi 1160595254 277 KFLHDKGFPYGHLHASNVMLDGDT 300
Cdd:cd13996   121 SYIHSKGIVHRDLKPSNIFLDNDD 144
STKc_WNK2_like cd14032
Catalytic domain of With No Lysine (WNK) 2-like Serine/Threonine kinases; STKs catalyze the ...
178-353 1.58e-03

Catalytic domain of With No Lysine (WNK) 2-like Serine/Threonine kinases; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. WNK2 is widely expressed and has been shown to be epigenetically silenced in gliomas. It inhibits cell growth by acting as a negative regulator of MEK1-ERK1/2 signaling. WNK2 modulates growth factor-induced cancer cell proliferation, suggesting that it may be a tumor suppressor gene. WNKs comprise a subfamily of STKs with an unusual placement of the catalytic lysine relative to all other protein kinases. They are critical in regulating ion balance and are thus, important components in the control of blood pressure. The WNK2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270934 [Multi-domain]  Cd Length: 266  Bit Score: 40.83  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 178 LSWADLGPDKY--LSDKDFQCLIKLLPSCLHPYIYRvtFATANESSA------LLIRMFNEKGTLKDLIYKAKPKDPflk 249
Cdd:cd14032    29 VAWCELQDRKLtkVERQRFKEEAEMLKGLQHPNIVR--FYDFWESCAkgkrciVLVTELMTSGTLKTYLKRFKVMKP--- 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 250 kycnpkkiqglelQQIKTYGRQILEVLKFLHDKGFPYGH--LHASNVMLDGDT--CRLLDLENSLLGLPSFYRSYFS--- 322
Cdd:cd14032   104 -------------KVLRSWCRQILKGLLFLHTRTPPIIHrdLKCDNIFITGPTgsVKIGDLGLATLKRASFAKSVIGtpe 170
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1160595254 323 ----QFRKINTLESVDVHCFGHLLYEMTYGRPPDS 353
Cdd:cd14032   171 fmapEMYEEHYDESVDVYAFGMCMLEMATSEYPYS 205
STKc_CMGC cd05118
Catalytic domain of CMGC family Serine/Threonine Kinases; STKs catalyze the transfer of the ...
258-357 1.99e-03

Catalytic domain of CMGC family Serine/Threonine Kinases; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and other kinases. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Other members of the CMGC family include casein kinase 2 (CK2), Dual-specificity tYrosine-phosphorylated and -Regulated Kinase (DYRK), Glycogen Synthase Kinase 3 (GSK3), among many others. The CMGC family is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270688 [Multi-domain]  Cd Length: 249  Bit Score: 40.30  E-value: 1.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 258 QGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDGDTC--RLLDL---------ENSLLGLPSFYRSYFSQFRK 326
Cdd:cd05118    96 RGLPLDLIKSYLYQLLQALDFLHSNGIIHRDLKPENILINLELGqlKLADFglarsftspPYTPYVATRWYRAPEVLLGA 175
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1160595254 327 INTLESVDVHCFGHLLYEMTYGRP--PDSVPVD 357
Cdd:cd05118   176 KPYGSSIDIWSLGCILAELLTGRPlfPGDSEVD 208
STKc_WNK3 cd14031
Catalytic domain of the Serine/Threonine protein kinase, With No Lysine (WNK) 3; STKs catalyze ...
248-353 3.34e-03

Catalytic domain of the Serine/Threonine protein kinase, With No Lysine (WNK) 3; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. WNK3 shows a restricted expression pattern; it is found at high levels in the pituary glands and is also expressed in the kidney and brain. It has been shown to regulate many ion transporters including members of the SLC12A family of cation-chloride cotransporters such as NCC and NKCC2, the renal potassium channel ROMK, and the epithelial calcium channels TRPV5 and TRPV6. WNK3 appears to sense low-chloride hypotonic stress and under these conditions, it activates SPAK, which directly interacts and phosphorylates cation-chloride cotransporters. WNK3 has also been shown to promote cell survival, possibly through interaction with procaspase-3 and HSP70. WNKs comprise a subfamily of STKs with an unusual placement of the catalytic lysine relative to all other protein kinases. The WNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270933 [Multi-domain]  Cd Length: 275  Bit Score: 39.70  E-value: 3.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 248 LKKYCnpKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGH--LHASNVMLDGDT--CRLLDL----------ENSLLGL 313
Cdd:cd14031   100 LKTYL--KRFKVMKPKVLRSWCRQILKGLQFLHTRTPPIIHrdLKCDNIFITGPTgsVKIGDLglatlmrtsfAKSVIGT 177
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1160595254 314 PSF-----YRSYFSqfrkintlESVDVHCFGHLLYEMTYGRPPDS 353
Cdd:cd14031   178 PEFmapemYEEHYD--------ESVDVYAFGMCMLEMATSEYPYS 214
STKc_nPKC_epsilon cd05591
Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C epsilon; STKs catalyze ...
268-416 3.69e-03

Catalytic domain of the Serine/Threonine Kinase, Novel Protein Kinase C epsilon; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. The nPKC-epsilon subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270743 [Multi-domain]  Cd Length: 321  Bit Score: 39.78  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 268 YGRQILEVLKFLHDKGFPYGHLHASNVMLDGDT-CRLLD------------LENSLLGLPSFYRSYFSQfrKINTLESVD 334
Cdd:cd05591   101 YAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGhCKLADfgmckegilngkTTTTFCGTPDYIAPEILQ--ELEYGPSVD 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 335 VHCFGHLLYEMTYGRPP----------DSVPVDS--FPPAPSMAVVAVLES--------TLSCEACKNGMPTIsrlLQMP 394
Cdd:cd05591   179 WWALGVLMYEMMAGQPPfeadneddlfESILHDDvlYPVWLSKEAVSILKAfmtknpakRLGCVASQGGEDAI---RQHP 255
                         170       180
                  ....*....|....*....|..
gi 1160595254 395 LFSDVLLTTSEKPQFKIPTKLK 416
Cdd:cd05591   256 FFREIDWEALEQRKVKPPFKPK 277
PX_HS1BP3 cd06868
The phosphoinositide binding Phox Homology domain of HS1BP3; The PX domain is a ...
14-119 4.75e-03

The phosphoinositide binding Phox Homology domain of HS1BP3; The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.


Pssm-ID: 132778  Cd Length: 120  Bit Score: 37.39  E-value: 4.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254  14 LDDTVPLTAAIeASQSLQSHTEYIIRVQRGISVENS----------WQIVRRYSDFDLLNNSL--QIAGLSLPLPPKK-- 79
Cdd:cd06868     2 LDLTVPEYQEI-RGKTSSGHVLYQIVVVTRLAAFKSakhkeedvvqFMVSKKYSEFEELYKKLseKYPGTILPPLPRKal 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1160595254  80 LIGNMDrefIAERQKGLQNYLNVITTNHILSNCELVKKFL 119
Cdd:cd06868    81 FVSESD---IRERRAAFNDFMRFISKDEKLANCPELLEFL 117
STKc_WNK1 cd14030
Catalytic domain of the Serine/Threonine protein kinase, With No Lysine (WNK) 1; STKs catalyze ...
248-353 6.84e-03

Catalytic domain of the Serine/Threonine protein kinase, With No Lysine (WNK) 1; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. WNK1 is widely expressed and is most abundant in the testis. In hyperosmotic or hypotonic low-chloride stress conditions, WNK1 is activated and it phosphorylates its substrates including SPAK and OSR1 kinases, which regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. Mutations in WNK1 cause PseudoHypoAldosteronism type II (PHAII), characterized by hypertension and hyperkalemia. WNK1 negates WNK4-mediated inhibition of the sodium-chloride cotransporter NCC and activates the epithelial sodium channel ENaC by activating SGK1. WNK1 also decreases the surface expression of renal outer medullary potassium channel (ROMK) by stimulating their endocytosis. Hypertension and hyperkalemia in PHAII patients with WNK1 mutations may be due partly to increased activity of NCC and ENaC, and impaired renal potassium secretion by ROMK, respectively. In addition, WNK1 interacts with MEKK2/3 and acts as an activator of extracellular signal-regulated kinase (ERK) 5. It also negatively regulates TGFbeta signaling. WNKs comprise a subfamily of STKs with an unusual placement of the catalytic lysine relative to all other protein kinases. The WNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270932 [Multi-domain]  Cd Length: 289  Bit Score: 38.88  E-value: 6.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 248 LKKYCnpKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGH--LHASNVMLDGDT--CRLLDLENSLLGLPSFYRSYFS- 322
Cdd:cd14030   115 LKTYL--KRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHrdLKCDNIFITGPTgsVKIGDLGLATLKRASFAKSVIGt 192
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1160595254 323 ------QFRKINTLESVDVHCFGHLLYEMTYGRPPDS 353
Cdd:cd14030   193 pefmapEMYEEKYDESVDVYAFGMCMLEMATSEYPYS 229
STKc_cPKC_alpha cd05615
Catalytic domain of the Serine/Threonine Kinase, Classical Protein Kinase C alpha; STKs ...
268-351 8.00e-03

Catalytic domain of the Serine/Threonine Kinase, Classical Protein Kinase C alpha; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. The cPKC-alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270766 [Multi-domain]  Cd Length: 341  Bit Score: 38.82  E-value: 8.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 268 YGRQILEVLKFLHDKGFPYGHLHASNVMLDGD---------TCRLLDLEN----SLLGLPSFYRSYFSQFRKINtlESVD 334
Cdd:cd05615   116 YAAEISVGLFFLHKKGIIYRDLKLDNVMLDSEghikiadfgMCKEHMVEGvttrTFCGTPDYIAPEIIAYQPYG--RSVD 193
                          90
                  ....*....|....*..
gi 1160595254 335 VHCFGHLLYEMTYGRPP 351
Cdd:cd05615   194 WWAYGVLLYEMLAGQPP 210
STKc_PKA cd14209
Catalytic subunit of the Serine/Threonine Kinase, cAMP-dependent protein kinase; STKs catalyze ...
255-351 9.74e-03

Catalytic subunit of the Serine/Threonine Kinase, cAMP-dependent protein kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 271111 [Multi-domain]  Cd Length: 290  Bit Score: 38.15  E-value: 9.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160595254 255 KKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLD----------GDTCRLLDLENSLLGLPSFYRSYFSQF 324
Cdd:cd14209    93 RRIGRFSEPHARFYAAQIVLAFEYLHSLDLIYRDLKPENLLIDqqgyikvtdfGFAKRVKGRTWTLCGTPEYLAPEIILS 172
                          90       100
                  ....*....|....*....|....*..
gi 1160595254 325 RKINTleSVDVHCFGHLLYEMTYGRPP 351
Cdd:cd14209   173 KGYNK--AVDWWALGVLIYEMAAGYPP 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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