View
Concise Results
Standard Results
Full Results
neuroblast differentiation-associated protein AHNAK isoform 1 [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
TamB super family
cl34519 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
5109-5658
5.08e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
COG2911 :Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 63.14
E-value: 5.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5109 P SPK L E G E L QAPD L E LS L ---- PAIHVEG LD IK A KAPKV ---- KMPDVDISVPKIEGDLKG - PKVQANL G APDINIE G - L 5178
Cdd:COG2911 27 P LAL L R G R L CIDE L A LS A sldg DRLRLDN LD LD A PEGAL sgll DLVQATLDAEGLDLASSA l DDLDLRS G GNRLTLS G n L 106
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5179 D A KVKTPSFGIS AP QVS - IPDVNVN L K G p KIK GD vpsv GL EGPDV D LQ G PE A KIKF pkfsmpkigipgv KMEGG G AEVHA 5257
Cdd:COG2911 107 S A ASLDGDLDLD AP DLA d LAALLPG L A G - SLS GD ---- GL DSLSL D AD G TL A QHRL ------------- DLDAK G EPASL 168
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5258 Q L p S L E G D L RGP D VK ------- L EGPDVS L KG P G vdlp SVNLSMPK V SGPD L D L NLK G P - S L K G D L DASV p SMKVHAPG L 5329
Cdd:COG2911 169 S L - A L S G G L DRD D GG tlsrldf L NTGRWG L AA P A ---- TLSYDDGR V TLGP L C L AGG G S l C L S G T L GGTL - DLQLRLKN L 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5330 N L SGVG gkm QVGG D GVKVP G - IDATTK L -- NVGA P DVTLR g P SL Q GDL AVSGDIKCPKVSV G APD L SLEASE G SIK L pkm 5406
Cdd:COG2911 243 P L ALLN --- PFLP D DLGLS G t LNGDAD L sg GLAN P QGDAS - L SL S GDL TLNDGLGGLPLGL G DLT L NARLAN G RLT L --- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5407 klp QFGISTP G SD - L HVNAKG P QVS G ELKGPGV D V NL KGPRISA ------- P N V DFN L E G p KVK G S L GAT G EIKG P TVG G 5478
Cdd:COG2911 316 --- DLTLDGG G LG t L SLSGSV P LAD G LPPSAPL D G NL RLDNLDL allnpll P G V LER L S G - QLN G D L RLS G TLAA P QLN G 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5479 G L --------- P GI GV QGLEG NL Q mpg IKSS G CDVN L P G VNVKLPT G QIS gpeikgg L K G S e V GFH G AAP -- D ISV KG PA 5547
Cdd:COG2911 392 Q L tlddgrlkl P AL GV RLTDI NL R --- LRFD G DRLT L D G LTADSGG G TLT ------- L S G T - V DLD G LSW pa D LTL KG DN 460
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5548 FN --------- MA S PESDFGINLK GP KIK G GAD V SGG - VSA P DISLGEGH LS ---- V KGSGG E WKGPQVSSA L N LD TS -- 5611
Cdd:COG2911 461 LR vlnppdyta TV S GDLTLTGTPD GP TLS G NVT V PRA r ITL P ELPPSAVS LS ddvv V VNRPP E PVPEEEAAG L P LD LD ln 540
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1079280806 5612 - KFAGGLHFS G PKVEGGV k GG QIG L QAPGLSVSGPQ G HLESGS G KVTF 5658
Cdd:COG2911 541 v NLGDDVRVR G FGLDARL - GG DLR L TGTPGGAPRLT G EINLVR G RYNA 587
AsmA super family
cl34531 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3050-3469
3.32e-07
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
COG2982 :Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 56.97
E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3050 DL DV S - G P KVDIDVP DV NIEG P E G KLKG P KFKMPEM nikapkismp DI DL N L kgpkvkgdmdvs LP KVE G DMK V PDVDIK 3128
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN P D G FGGP P LASAERL ---------- EL DL A L ------------ LP LLS G ELE V DEITLD 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3129 GP KVDI nap DV D VQ G - PD W HLKMPKIKMPK ismpgf KG E GPEVDVNLPKADLD --------- V SG PKVDV D VPDVNIE GP 3198
Cdd:COG2982 113 GP VINL --- ER D AD G r AN W DFLLAAAAAAA ------ DA E ASAWSLDIGRLEIT dgrlvydda A SG ADLTL D DLNLTLS GP 183
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3199 D ---------- AK L K G PKFKM p EMN I KAPKISM P - D L D L N L KGPKMKGEV D -- V S LA NVE G D L KGPALDIK -- GPKID V D 3263
Cdd:COG2982 184 S ldgpfrlsgs GR L N G QPLTL - DGK I GGLLALG P y P L K L D L RSGDLRLSL D gt V D LA GLD G Q L ALSGPSLR dl LALLG V T 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3264 A P D idih GPDAK L K G pklkmp DMHVNMPKISMPEIDLN L KG S K L K GD VD V S G --- P K L E GD IKAPS LD IK -- G P EVDVSG 3338
Cdd:COG2982 263 L P E ---- PGPFS L S G ------ RLTADGDRLRLEDLKGT L GD S D L T GD LS V T G gdr P A L T GD LASDR LD LD dl L P AAPAAA 332
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3339 PKLNIEGKSKKSRFK L P --------- KFNF S GSKVQTPEVDVKGKKPDIDITGPKV D INAPDVEV - Q G KVK GS kfkmpf L 3408
Cdd:COG2982 333 AAGAPAAARGLPDAP L D lsalralda DVRL S ADSLKLGGLPLGDLAAHLTLDDGRL D LDPLSAGL y G G TLS GS ------ L 406
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1079280806 3409 SISSPK v SM P D V E L N L KSPK V K - G D L -- D I AG P ------- N LEG D FK G PKVDIK A P ------ EVN L NAP D VDVH G PD 3469
Cdd:COG2982 407 TLDARG - DP P R V A L K L SLSG V D l G P L lp D L AG F drlsgtl N GDL D LS G TGNSVA A L laslng SAS L SLG D GAIS G LN 482
TamB super family
cl34519 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3223-3722
6.72e-06
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
COG2911 :Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 53.12
E-value: 6.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3223 D LDL NL KG PKMKGEVDV S ---------- L ANVE g D L KGPALDIKG P - KIDV D APDIDI ------ H G PDAK L K G PKLKMP D 3285
Cdd:COG2911 156 R LDL DA KG EPASLSLAL S ggldrddggt L SRLD - F L NTGRWGLAA P a TLSY D DGRVTL gplcla G G GSLC L S G TLGGTL D 234
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3286 MHVNMPKISMPEI ------ DL N L K G s K L K GD V D V SG ---- P KLEGDIKAP --- S L DIKGPEVDVSGPK L NIEGKSKKS R F 3352
Cdd:COG2911 235 LQLRLKNLPLALL npflpd DL G L S G - T L N GD A D L SG glan P QGDASLSLS gdl T L NDGLGGLPLGLGD L TLNARLANG R L 313
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3353 K L pkfnfsgskvqtp EVDVK G KKPD - IDIT G -- P KV D INA P DVEVQ G KVKGSKFKMPF L S isspk VSM P D V ELN L KS p KV 3429
Cdd:COG2911 314 T L ------------- DLTLD G GGLG t LSLS G sv P LA D GLP P SAPLD G NLRLDNLDLAL L N ----- PLL P G V LER L SG - QL 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3430 K GDL DIA G ---- P N L E G DFKGPKVDI K A P EVNLNAP D VDV hgpdw N L KMPKMK mpk FSVS GL K A EGPDVAVD L p K G DINI 3505
Cdd:COG2911 375 N GDL RLS G tlaa P Q L N G QLTLDDGRL K L P ALGVRLT D INL ----- R L RFDGDR --- LTLD GL T A DSGGGTLT L - S G TVDL 445
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3506 E G P S MNI egp DL NV egpeggl KG PKFK --- M PD MNIKA - PKI smp DIDLNLK GP KVK G D V DI slpklegdlkg P EVD I KG 3581
Cdd:COG2911 446 D G L S WPA --- DL TL ------- KG DNLR vln P PD YTATV s GDL --- TLTGTPD GP TLS G N V TV ----------- P RAR I TL 501
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3582 P KVDIN A PDVD vhgpdwhlkm PK V KM pkfsmpgf KGEG PE VDVTLPK A DIDISG p NVD V DVP - DV NIE G P -- DA K L K G pk 3658
Cdd:COG2911 502 P ELPPS A VSLS ---------- DD V VV -------- VNRP PE PVPEEEA A GLPLDL - DLN V NLG d DV RVR G F gl DA R L G G -- 560
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1079280806 3659 fkmpemnikapkismpdf DL N L K G ----- P KMK G DVVV slpk V E G DLK -- G PEVD I K ------- GP KV D idt P DIN IE 3722
Cdd:COG2911 561 ------------------ DL R L T G tpgga P RLT G EINL ---- V R G RYN ay G QRLT I E rgsitfn GP PL D --- P YLD IE 613
TamB super family
cl34519 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
192-681
7.07e-06
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
COG2911 :Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 52.73
E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 192 ISNV D V et Q SG KTVIR L p SG SGA A SPTGSAV D IR A --- GAIS A SG P E L Q G aghskl QVTMP G I kvgg SGVNVN A K G LDLG 268
Cdd:COG2911 88 LDDL D L -- R SG GNRLT L - SG NLS A ASLDGDL D LD A pdl ADLA A LL P G L A G ------ SLSGD G L ---- DSLSLD A D G TLAQ 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 269 G R -- GGVQVPAVDI S SS L G G RAVEVQ G PS L ESG D H gkikfptmkvpkfg VS TGR E G QTPK A G L RVSAPE V SV G H ---- K G 342
Cdd:COG2911 155 H R ld LDAKGEPASL S LA L S G GLDRDD G GT L SRL D F -------------- LN TGR W G LAAP A T L SYDDGR V TL G P lcla G G 220
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 343 G KPG L TIQAP --- Q L EVSVPSANIEG L EGK L - KGPQIT G p S L E GD LG L K G akpqghigv DASA PQ IGG S ITGP - SVEVQA 417
Cdd:COG2911 221 G SLC L SGTLG gtl D L QLRLKNLPLAL L NPF L p DDLGLS G - T L N GD AD L S G --------- GLAN PQ GDA S LSLS g DLTLND 290
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 418 PDIDVQGPGSK L NV pkmkvp KFSVSGAKGE etg I D V TL PT G EVTVPGV SG D V S L PEIATG gl EGKMK G T kvktpemiiqk 497
Cdd:COG2911 291 GLGGLPLGLGD L TL ------ NARLANGRLT --- L D L TL DG G GLGTLSL SG S V P L ADGLPP -- SAPLD G N ----------- 348
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 498 pk ISMQDV DL S L GS P ----------- K L K GD IKV S ---- AP GVQ G DVKGPQVA LK GSR -- V DIETP NL EGTLT G P R -- L G 558
Cdd:COG2911 349 -- LRLDNL DL A L LN P llpgvlerlsg Q L N GD LRL S gtla AP QLN G QLTLDDGR LK LPA lg V RLTDI NL RLRFD G D R lt L D 426
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 559 SPSGKT G TCRISM S ---------- EV DL NVAA -------- P KVKGG V DVT L -------- P RVE G K V K VP EVDVRG P KVDV 612
Cdd:COG2911 427 GLTADS G GGTLTL S gtvdldglsw PA DL TLKG dnlrvlnp P DYTAT V SGD L tltgtpdg P TLS G N V T VP RARITL P ELPP 506
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1079280806 613 SA PDVEA hgpew NLKMPKMKMPTFSTPG A K G EGP D VHMTL pkgdis IS G PK V N V EAPDVNLE g LGG K L K 681
Cdd:COG2911 507 SA VSLSD ----- DVVVVNRPPEPVPEEE A A G LPL D LDLNV ------ NL G DD V R V RGFGLDAR - LGG D L R 563
PDZ_canonical super family
cl49608 canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
22-56
3.14e-04
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
cd06716 :Pssm-ID: 483948 [Multi-domain]
Cd Length: 88
Bit Score: 42.65
E-value: 3.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1079280806 22 GLT IAQ R D D ----- G VF V Q EV TQ NS P AA RT G VVK EGDQI V 56
Cdd:cd06716 18 GLT LCY R T D deedt G IY V S EV DP NS I AA KD G RIR EGDQI L 57
AsmA super family
cl34531 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
4532-4945
3.25e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
COG2982 :Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 46.96
E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4532 K I K GD MDI S V pklegdlkgpkvdvk G P KV G IDTP D IDIHG P E G KLKG P KFKMPD L H L kapkismp EVD L N -- L K G pkvkg 4609
Cdd:COG2982 51 T I D GD LSL S L --------------- F P WP G VTLG D VTLSN P D G FGGP P LASAER L E L -------- DLA L L pl L S G ----- 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4610 dm DISLPKVE gd L K GP EVDI - RD P kvdidvpdvdv Q G - PD W HLKMPK vkmpkfsmpgfkgegpdvdvnl PK A DI D VSGPK 4687
Cdd:COG2982 103 -- ELEVDEIT -- L D GP VINL e RD A ----------- D G r AN W DFLLAA ---------------------- AA A AA D AEASA 145
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4688 VDV D VPDVN I EGPDAKLKGPKFKM pemsikap KISMP D ID L N L K GP KVK G DVDVTL pkv E G D L K G PEADIK G p K VDINTP 4767
Cdd:COG2982 146 WSL D IGRLE I TDGRLVYDDAASGA -------- DLTLD D LN L T L S GP SLD G PFRLSG --- S G R L N G QPLTLD G - K IGGLLA 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4768 ------ DV D VHGP D WH L KM pkvk MPKFSMP G FK G egpdv DVS L PKADIDVSGPKVD V DI P dvni E GPDAK L K G P kfkmpe 4841
Cdd:COG2982 214 lgpypl KL D LRSG D LR L SL ---- DGTVDLA G LD G ----- QLA L SGPSLRDLLALLG V TL P ---- E PGPFS L S G R ------ 274
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4842 INIKAPKISIP D VDLD L KGPKVK GD FD V S --- V P KVE G T L KGPEV DL kg PR L --- DFEGPD A KLSGPSLKM P SLEISAPK 4915
Cdd:COG2982 275 LTADGDRLRLE D LKGT L GDSDLT GD LS V T ggd R P ALT G D L ASDRL DL -- DD L lpa APAAAA A GAPAAARGL P DAPLDLSA 352
410 420 430
....*....|....*....|....*....|
gi 1079280806 4916 VT A P D V D LH L K A PKIGFS G PK L EGGEVD L K 4945
Cdd:COG2982 353 LR A L D A D VR L S A DSLKLG G LP L GDLAAH L T 382
AsmA super family
cl37543 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
4326-4631
1.17e-03
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
pfam05170 :Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 45.55
E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4326 MPGFKGE G PDVDVTL --- PKADIEISGPKVDID A PDVSIEG P DAKLKGPKFKM P EMN I KAPKISMPDI D FNLKGPKVKGD 4402
Cdd:pfam05170 105 IDSIRLD G AELALER lkq GNWNWQELIQNQQNQ A SNAPTQQ P QPTWPVAAWSL P IGR I QVSNGQVTID D KASQKILKDIN 184
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4403 VDVSLP kvegdlkgpei DIK GPS L didt PDVN I EG p E GK LKGPKFKMP --- EMN I KAPK IS MPDFDLHLKGPKVKGDVDV 4479
Cdd:pfam05170 185 LELQVS ----------- TLY GPS F ---- NWSK I TI - S GK GDQDPQSFG sqv NVT I LSGE IS GEALRGSTSTGGMLLLQTL 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4480 S L P KVESD lkgpevdiegp EG KL KGPKFKMPDVHFKSPQI S MS D I DL NLK G P K IKGD ---- MDISVPK L EGDLKG P KVDV 4555
Cdd:pfam05170 249 S S P IYHIN ----------- SL KL LNAQLELDGTLWDNLNL S IE D L DL KAS G W K SITV nlal TADELDS L ANQAEL P GANL 317
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4556 kgpkvg I DTP D - I DIHGPEGKL K GPKFKM p DLH L KAPKISMP ev D L NLK G P K VK G DM DI S L ---------- PK VE G D L KG 4624
Cdd:pfam05170 318 ------ P DTP Q n I TLGELSLSF K TGRVQV - SGS L NSLTLNLD -- Y L SFD G K K WV G SS DI D L snrlpqpqpr PK LR G K L SS 388
....*..
gi 1079280806 4625 PE V D IRD 4631
Cdd:pfam05170 389 PE L D LDN 395
Herpes_BLLF1 super family
cl37540 Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
4879-5014
1.28e-03
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
pfam05109 :Pssm-ID: 282904 [Multi-domain]
Cd Length: 886
Bit Score: 45.68
E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4879 K G PE VDLKG P R L D --- F EG P DAKLSG PS LKMPSLEIS AP KV T A P D V --- D LHLKA P KIGF SG --------- P KLE G G E V d 4943
Cdd:pfam05109 423 K A PE STTTS P T L N ttg F AA P NTTTGL PS STHVPTNLT AP AS T G P T V sta D VTSPT P AGTT SG aspvtpsps P RDN G T E S - 501
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1079280806 4944 l K G P KVEA P SLD V HMDS P DINIEG P D V KI P KFKKPKFGF G AK SP KADIKS P SLDV T V P EAELNLE TP EISV 5014
Cdd:pfam05109 502 - K A P DMTS P TSA V TTPT P NATSPT P A V TT P TPNATSPTL G KT SP TSAVTT P TPNA T S P TPAVTTP TP NATI 571
Name
Accession
Description
Interval
E-value
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
5109-5658
5.08e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 63.14
E-value: 5.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5109 P SPK L E G E L QAPD L E LS L ---- PAIHVEG LD IK A KAPKV ---- KMPDVDISVPKIEGDLKG - PKVQANL G APDINIE G - L 5178
Cdd:COG2911 27 P LAL L R G R L CIDE L A LS A sldg DRLRLDN LD LD A PEGAL sgll DLVQATLDAEGLDLASSA l DDLDLRS G GNRLTLS G n L 106
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5179 D A KVKTPSFGIS AP QVS - IPDVNVN L K G p KIK GD vpsv GL EGPDV D LQ G PE A KIKF pkfsmpkigipgv KMEGG G AEVHA 5257
Cdd:COG2911 107 S A ASLDGDLDLD AP DLA d LAALLPG L A G - SLS GD ---- GL DSLSL D AD G TL A QHRL ------------- DLDAK G EPASL 168
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5258 Q L p S L E G D L RGP D VK ------- L EGPDVS L KG P G vdlp SVNLSMPK V SGPD L D L NLK G P - S L K G D L DASV p SMKVHAPG L 5329
Cdd:COG2911 169 S L - A L S G G L DRD D GG tlsrldf L NTGRWG L AA P A ---- TLSYDDGR V TLGP L C L AGG G S l C L S G T L GGTL - DLQLRLKN L 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5330 N L SGVG gkm QVGG D GVKVP G - IDATTK L -- NVGA P DVTLR g P SL Q GDL AVSGDIKCPKVSV G APD L SLEASE G SIK L pkm 5406
Cdd:COG2911 243 P L ALLN --- PFLP D DLGLS G t LNGDAD L sg GLAN P QGDAS - L SL S GDL TLNDGLGGLPLGL G DLT L NARLAN G RLT L --- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5407 klp QFGISTP G SD - L HVNAKG P QVS G ELKGPGV D V NL KGPRISA ------- P N V DFN L E G p KVK G S L GAT G EIKG P TVG G 5478
Cdd:COG2911 316 --- DLTLDGG G LG t L SLSGSV P LAD G LPPSAPL D G NL RLDNLDL allnpll P G V LER L S G - QLN G D L RLS G TLAA P QLN G 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5479 G L --------- P GI GV QGLEG NL Q mpg IKSS G CDVN L P G VNVKLPT G QIS gpeikgg L K G S e V GFH G AAP -- D ISV KG PA 5547
Cdd:COG2911 392 Q L tlddgrlkl P AL GV RLTDI NL R --- LRFD G DRLT L D G LTADSGG G TLT ------- L S G T - V DLD G LSW pa D LTL KG DN 460
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5548 FN --------- MA S PESDFGINLK GP KIK G GAD V SGG - VSA P DISLGEGH LS ---- V KGSGG E WKGPQVSSA L N LD TS -- 5611
Cdd:COG2911 461 LR vlnppdyta TV S GDLTLTGTPD GP TLS G NVT V PRA r ITL P ELPPSAVS LS ddvv V VNRPP E PVPEEEAAG L P LD LD ln 540
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1079280806 5612 - KFAGGLHFS G PKVEGGV k GG QIG L QAPGLSVSGPQ G HLESGS G KVTF 5658
Cdd:COG2911 541 v NLGDDVRVR G FGLDARL - GG DLR L TGTPGGAPRLT G EINLVR G RYNA 587
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3050-3469
3.32e-07
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 56.97
E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3050 DL DV S - G P KVDIDVP DV NIEG P E G KLKG P KFKMPEM nikapkismp DI DL N L kgpkvkgdmdvs LP KVE G DMK V PDVDIK 3128
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN P D G FGGP P LASAERL ---------- EL DL A L ------------ LP LLS G ELE V DEITLD 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3129 GP KVDI nap DV D VQ G - PD W HLKMPKIKMPK ismpgf KG E GPEVDVNLPKADLD --------- V SG PKVDV D VPDVNIE GP 3198
Cdd:COG2982 113 GP VINL --- ER D AD G r AN W DFLLAAAAAAA ------ DA E ASAWSLDIGRLEIT dgrlvydda A SG ADLTL D DLNLTLS GP 183
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3199 D ---------- AK L K G PKFKM p EMN I KAPKISM P - D L D L N L KGPKMKGEV D -- V S LA NVE G D L KGPALDIK -- GPKID V D 3263
Cdd:COG2982 184 S ldgpfrlsgs GR L N G QPLTL - DGK I GGLLALG P y P L K L D L RSGDLRLSL D gt V D LA GLD G Q L ALSGPSLR dl LALLG V T 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3264 A P D idih GPDAK L K G pklkmp DMHVNMPKISMPEIDLN L KG S K L K GD VD V S G --- P K L E GD IKAPS LD IK -- G P EVDVSG 3338
Cdd:COG2982 263 L P E ---- PGPFS L S G ------ RLTADGDRLRLEDLKGT L GD S D L T GD LS V T G gdr P A L T GD LASDR LD LD dl L P AAPAAA 332
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3339 PKLNIEGKSKKSRFK L P --------- KFNF S GSKVQTPEVDVKGKKPDIDITGPKV D INAPDVEV - Q G KVK GS kfkmpf L 3408
Cdd:COG2982 333 AAGAPAAARGLPDAP L D lsalralda DVRL S ADSLKLGGLPLGDLAAHLTLDDGRL D LDPLSAGL y G G TLS GS ------ L 406
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1079280806 3409 SISSPK v SM P D V E L N L KSPK V K - G D L -- D I AG P ------- N LEG D FK G PKVDIK A P ------ EVN L NAP D VDVH G PD 3469
Cdd:COG2982 407 TLDARG - DP P R V A L K L SLSG V D l G P L lp D L AG F drlsgtl N GDL D LS G TGNSVA A L laslng SAS L SLG D GAIS G LN 482
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3223-3722
6.72e-06
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 53.12
E-value: 6.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3223 D LDL NL KG PKMKGEVDV S ---------- L ANVE g D L KGPALDIKG P - KIDV D APDIDI ------ H G PDAK L K G PKLKMP D 3285
Cdd:COG2911 156 R LDL DA KG EPASLSLAL S ggldrddggt L SRLD - F L NTGRWGLAA P a TLSY D DGRVTL gplcla G G GSLC L S G TLGGTL D 234
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3286 MHVNMPKISMPEI ------ DL N L K G s K L K GD V D V SG ---- P KLEGDIKAP --- S L DIKGPEVDVSGPK L NIEGKSKKS R F 3352
Cdd:COG2911 235 LQLRLKNLPLALL npflpd DL G L S G - T L N GD A D L SG glan P QGDASLSLS gdl T L NDGLGGLPLGLGD L TLNARLANG R L 313
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3353 K L pkfnfsgskvqtp EVDVK G KKPD - IDIT G -- P KV D INA P DVEVQ G KVKGSKFKMPF L S isspk VSM P D V ELN L KS p KV 3429
Cdd:COG2911 314 T L ------------- DLTLD G GGLG t LSLS G sv P LA D GLP P SAPLD G NLRLDNLDLAL L N ----- PLL P G V LER L SG - QL 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3430 K GDL DIA G ---- P N L E G DFKGPKVDI K A P EVNLNAP D VDV hgpdw N L KMPKMK mpk FSVS GL K A EGPDVAVD L p K G DINI 3505
Cdd:COG2911 375 N GDL RLS G tlaa P Q L N G QLTLDDGRL K L P ALGVRLT D INL ----- R L RFDGDR --- LTLD GL T A DSGGGTLT L - S G TVDL 445
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3506 E G P S MNI egp DL NV egpeggl KG PKFK --- M PD MNIKA - PKI smp DIDLNLK GP KVK G D V DI slpklegdlkg P EVD I KG 3581
Cdd:COG2911 446 D G L S WPA --- DL TL ------- KG DNLR vln P PD YTATV s GDL --- TLTGTPD GP TLS G N V TV ----------- P RAR I TL 501
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3582 P KVDIN A PDVD vhgpdwhlkm PK V KM pkfsmpgf KGEG PE VDVTLPK A DIDISG p NVD V DVP - DV NIE G P -- DA K L K G pk 3658
Cdd:COG2911 502 P ELPPS A VSLS ---------- DD V VV -------- VNRP PE PVPEEEA A GLPLDL - DLN V NLG d DV RVR G F gl DA R L G G -- 560
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1079280806 3659 fkmpemnikapkismpdf DL N L K G ----- P KMK G DVVV slpk V E G DLK -- G PEVD I K ------- GP KV D idt P DIN IE 3722
Cdd:COG2911 561 ------------------ DL R L T G tpgga P RLT G EINL ---- V R G RYN ay G QRLT I E rgsitfn GP PL D --- P YLD IE 613
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
192-681
7.07e-06
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 52.73
E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 192 ISNV D V et Q SG KTVIR L p SG SGA A SPTGSAV D IR A --- GAIS A SG P E L Q G aghskl QVTMP G I kvgg SGVNVN A K G LDLG 268
Cdd:COG2911 88 LDDL D L -- R SG GNRLT L - SG NLS A ASLDGDL D LD A pdl ADLA A LL P G L A G ------ SLSGD G L ---- DSLSLD A D G TLAQ 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 269 G R -- GGVQVPAVDI S SS L G G RAVEVQ G PS L ESG D H gkikfptmkvpkfg VS TGR E G QTPK A G L RVSAPE V SV G H ---- K G 342
Cdd:COG2911 155 H R ld LDAKGEPASL S LA L S G GLDRDD G GT L SRL D F -------------- LN TGR W G LAAP A T L SYDDGR V TL G P lcla G G 220
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 343 G KPG L TIQAP --- Q L EVSVPSANIEG L EGK L - KGPQIT G p S L E GD LG L K G akpqghigv DASA PQ IGG S ITGP - SVEVQA 417
Cdd:COG2911 221 G SLC L SGTLG gtl D L QLRLKNLPLAL L NPF L p DDLGLS G - T L N GD AD L S G --------- GLAN PQ GDA S LSLS g DLTLND 290
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 418 PDIDVQGPGSK L NV pkmkvp KFSVSGAKGE etg I D V TL PT G EVTVPGV SG D V S L PEIATG gl EGKMK G T kvktpemiiqk 497
Cdd:COG2911 291 GLGGLPLGLGD L TL ------ NARLANGRLT --- L D L TL DG G GLGTLSL SG S V P L ADGLPP -- SAPLD G N ----------- 348
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 498 pk ISMQDV DL S L GS P ----------- K L K GD IKV S ---- AP GVQ G DVKGPQVA LK GSR -- V DIETP NL EGTLT G P R -- L G 558
Cdd:COG2911 349 -- LRLDNL DL A L LN P llpgvlerlsg Q L N GD LRL S gtla AP QLN G QLTLDDGR LK LPA lg V RLTDI NL RLRFD G D R lt L D 426
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 559 SPSGKT G TCRISM S ---------- EV DL NVAA -------- P KVKGG V DVT L -------- P RVE G K V K VP EVDVRG P KVDV 612
Cdd:COG2911 427 GLTADS G GGTLTL S gtvdldglsw PA DL TLKG dnlrvlnp P DYTAT V SGD L tltgtpdg P TLS G N V T VP RARITL P ELPP 506
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1079280806 613 SA PDVEA hgpew NLKMPKMKMPTFSTPG A K G EGP D VHMTL pkgdis IS G PK V N V EAPDVNLE g LGG K L K 681
Cdd:COG2911 507 SA VSLSD ----- DVVVVNRPPEPVPEEE A A G LPL D LDLNV ------ NL G DD V R V RGFGLDAR - LGG D L R 563
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
3239-3579
2.12e-04
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 47.86
E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3239 V SL ANVE gd L KG P A l DIKG P KIDVDAPD I DIH g P DAK L KG p KLKMPDM hvnmp KISMP E ID L NLKGSK l KGDVDVSGPKL 3318
Cdd:pfam05170 66 L SL SDIT -- L AS P Q - GDAT P LVSLEQVK I SLS - P LPL L RK - QIEIDSI ----- RLDGA E LA L ERLKQG - NWNWQELIQNQ 134
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3319 EGDIKAPSLDIKG P EVD V SGPK L N I EG - KSKKSRFKL pkf NFSG S KVQTPEVDVKGKKPDI di T GP KV dina PDVEVQGK 3397
Cdd:pfam05170 135 QNQASNAPTQQPQ P TWP V AAWS L P I GR i QVSNGQVTI --- DDKA S QKILKDINLELQVSTL -- Y GP SF ---- NWSKITIS 205
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3398 V KG SKFKMP F L S ----- I S S PKV S MPDVELNLKSPKVKGDLDIAG P - NLEGDF K GPKVDIKAPEV ----- NL NAP D V D VH 3466
Cdd:pfam05170 206 G KG DQDPQS F G S qvnvt I L S GEI S GEALRGSTSTGGMLLLQTLSS P i YHINSL K LLNAQLELDGT lwdnl NL SIE D L D LK 285
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3467 GPD W NLKMPKMKMPKFSVSG L KAEGPDVAVD LP KGDI NI E -- GP S MNIEGPDLN V E G P egg L KGPKFKMPDMNIKAP K IS 3544
Cdd:pfam05170 286 ASG W KSITVNLALTADELDS L ANQAELPGAN LP DTPQ NI T lg EL S LSFKTGRVQ V S G S --- L NSLTLNLDYLSFDGK K WV 362
330 340 350
....*....|....*....|....*....|....*.
gi 1079280806 3545 - MP DIDL NLKG P KVK gdvdi SL PKL E G D L KG PE V D I 3579
Cdd:pfam05170 363 g SS DIDL SNRL P QPQ ----- PR PKL R G K L SS PE L D L 393
PDZ2-PDZRN4-like
cd06716 PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related ...
22-56
3.14e-04
PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 1 of PDZRN4, PDZRN3-B, and related domains. PDZRN4 (also known as ligand of numb protein X 4, and SEMACAP3-like protein) contains an N-terminal RING domain and two tandem repeat PDZ domains. It is involved in the progression of cancer, including human liver cancer and breast cancer, and may contribute to the tumorigenesis of rectal adenocarcinoma. Danio rerio PDZRN3-B may participate in neurogenesis: the first PDZ domain of Danio rerio Pdzrn3 interacts with Kidins220 (Kinase D-interacting substrate 220 kD, also named Ankyrin Repeat-Rich Membrane Spanning), a crucial mediator of signal transduction in neural tissues. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PDZRN4-like family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
Pssm-ID: 467200 [Multi-domain]
Cd Length: 88
Bit Score: 42.65
E-value: 3.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1079280806 22 GLT IAQ R D D ----- G VF V Q EV TQ NS P AA RT G VVK EGDQI V 56
Cdd:cd06716 18 GLT LCY R T D deedt G IY V S EV DP NS I AA KD G RIR EGDQI L 57
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
4532-4945
3.25e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 46.96
E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4532 K I K GD MDI S V pklegdlkgpkvdvk G P KV G IDTP D IDIHG P E G KLKG P KFKMPD L H L kapkismp EVD L N -- L K G pkvkg 4609
Cdd:COG2982 51 T I D GD LSL S L --------------- F P WP G VTLG D VTLSN P D G FGGP P LASAER L E L -------- DLA L L pl L S G ----- 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4610 dm DISLPKVE gd L K GP EVDI - RD P kvdidvpdvdv Q G - PD W HLKMPK vkmpkfsmpgfkgegpdvdvnl PK A DI D VSGPK 4687
Cdd:COG2982 103 -- ELEVDEIT -- L D GP VINL e RD A ----------- D G r AN W DFLLAA ---------------------- AA A AA D AEASA 145
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4688 VDV D VPDVN I EGPDAKLKGPKFKM pemsikap KISMP D ID L N L K GP KVK G DVDVTL pkv E G D L K G PEADIK G p K VDINTP 4767
Cdd:COG2982 146 WSL D IGRLE I TDGRLVYDDAASGA -------- DLTLD D LN L T L S GP SLD G PFRLSG --- S G R L N G QPLTLD G - K IGGLLA 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4768 ------ DV D VHGP D WH L KM pkvk MPKFSMP G FK G egpdv DVS L PKADIDVSGPKVD V DI P dvni E GPDAK L K G P kfkmpe 4841
Cdd:COG2982 214 lgpypl KL D LRSG D LR L SL ---- DGTVDLA G LD G ----- QLA L SGPSLRDLLALLG V TL P ---- E PGPFS L S G R ------ 274
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4842 INIKAPKISIP D VDLD L KGPKVK GD FD V S --- V P KVE G T L KGPEV DL kg PR L --- DFEGPD A KLSGPSLKM P SLEISAPK 4915
Cdd:COG2982 275 LTADGDRLRLE D LKGT L GDSDLT GD LS V T ggd R P ALT G D L ASDRL DL -- DD L lpa APAAAA A GAPAAARGL P DAPLDLSA 352
410 420 430
....*....|....*....|....*....|
gi 1079280806 4916 VT A P D V D LH L K A PKIGFS G PK L EGGEVD L K 4945
Cdd:COG2982 353 LR A L D A D VR L S A DSLKLG G LP L GDLAAH L T 382
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
3431-3911
5.71e-04
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 46.32
E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3431 G D LDI A G P N leg DFKG P K V DIKAPEVN L N apdvdvhg P D w N L KMPKMKMPK fsvsg LKAE G PDV A VDLP K - G DI N IE -- G 3507
Cdd:pfam05170 69 S D ITL A S P Q --- GDAT P L V SLEQVKIS L S -------- P L - P L LRKQIEIDS ----- IRLD G AEL A LERL K q G NW N WQ el I 131
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3508 PSMNIEGPDLNVEG P EGGLKGPKFKM P DMN I KAPKISMPDI D LNLK gp K VKG D VDIS L pk LEGD L K GP EVDIKGPKVDIN 3587
Cdd:pfam05170 132 QNQQNQASNAPTQQ P QPTWPVAAWSL P IGR I QVSNGQVTID D KASQ -- K ILK D INLE L -- QVST L Y GP SFNWSKITISGK 207
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3588 A p D V D VHGPDWHLKMPKVK m PKF S MPGFK G EGP evd VTLPKADIDI S G P NVDVD vpdvniegp DA KL KGPKFKMPEMNIK 3667
Cdd:pfam05170 208 G - D Q D PQSFGSQVNVTILS - GEI S GEALR G STS --- TGGMLLLQTL S S P IYHIN --------- SL KL LNAQLELDGTLWD 273
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3668 APKI S MP D F DL NLK G P K MKGDVV ---- VS L PKVEGDLKG P EVDI kgpkvd I DTP D - I NIEGSEGK FK GPKFKI p EMH L KA 3742
Cdd:pfam05170 274 NLNL S IE D L DL KAS G W K SITVNL alta DE L DSLANQAEL P GANL ------ P DTP Q n I TLGELSLS FK TGRVQV - SGS L NS 346
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3743 PKISMPDIDLNL K GPKVKG D V D V S L -------- PK ME G D L KG PE V D I ------------ K GPKVDIN A PDVDVQ G PD whl 3802
Cdd:pfam05170 347 LTLNLDYLSFDG K KWVGSS D I D L S N rlpqpqpr PK LR G K L SS PE L D L dnllpiktavaa K SRAPEWD A SGLSAD G AN --- 423
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3803 k M P KVKM P KFS mp G FK - G EGP DV DV N LP K adld V SGPKVD I DVPDVNIEGPE G K L KGPKF K MP -------- EMNIKAP K I 3873
Cdd:pfam05170 424 - L P LPVE P FLW -- G VW q G MDA DV SA N ID K ---- V TYSGLP I SDLKTKLRSEG G V L QLSRL K GG lyggylea GAQLDLS K K 496
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1079280806 3874 SMP - DIDL N L K GPKV K GDM - D VSLPK - VE G DMQV p D L D IK G 3911
Cdd:pfam05170 497 PAT y RLKI N A K NIPL K PLL p D LFKMF s TD G LLDI - D A D LQ G 536
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
4326-4631
1.17e-03
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 45.55
E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4326 MPGFKGE G PDVDVTL --- PKADIEISGPKVDID A PDVSIEG P DAKLKGPKFKM P EMN I KAPKISMPDI D FNLKGPKVKGD 4402
Cdd:pfam05170 105 IDSIRLD G AELALER lkq GNWNWQELIQNQQNQ A SNAPTQQ P QPTWPVAAWSL P IGR I QVSNGQVTID D KASQKILKDIN 184
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4403 VDVSLP kvegdlkgpei DIK GPS L didt PDVN I EG p E GK LKGPKFKMP --- EMN I KAPK IS MPDFDLHLKGPKVKGDVDV 4479
Cdd:pfam05170 185 LELQVS ----------- TLY GPS F ---- NWSK I TI - S GK GDQDPQSFG sqv NVT I LSGE IS GEALRGSTSTGGMLLLQTL 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4480 S L P KVESD lkgpevdiegp EG KL KGPKFKMPDVHFKSPQI S MS D I DL NLK G P K IKGD ---- MDISVPK L EGDLKG P KVDV 4555
Cdd:pfam05170 249 S S P IYHIN ----------- SL KL LNAQLELDGTLWDNLNL S IE D L DL KAS G W K SITV nlal TADELDS L ANQAEL P GANL 317
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4556 kgpkvg I DTP D - I DIHGPEGKL K GPKFKM p DLH L KAPKISMP ev D L NLK G P K VK G DM DI S L ---------- PK VE G D L KG 4624
Cdd:pfam05170 318 ------ P DTP Q n I TLGELSLSF K TGRVQV - SGS L NSLTLNLD -- Y L SFD G K K WV G SS DI D L snrlpqpqpr PK LR G K L SS 388
....*..
gi 1079280806 4625 PE V D IRD 4631
Cdd:pfam05170 389 PE L D LDN 395
Herpes_BLLF1
pfam05109 Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
4879-5014
1.28e-03
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain]
Cd Length: 886
Bit Score: 45.68
E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4879 K G PE VDLKG P R L D --- F EG P DAKLSG PS LKMPSLEIS AP KV T A P D V --- D LHLKA P KIGF SG --------- P KLE G G E V d 4943
Cdd:pfam05109 423 K A PE STTTS P T L N ttg F AA P NTTTGL PS STHVPTNLT AP AS T G P T V sta D VTSPT P AGTT SG aspvtpsps P RDN G T E S - 501
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1079280806 4944 l K G P KVEA P SLD V HMDS P DINIEG P D V KI P KFKKPKFGF G AK SP KADIKS P SLDV T V P EAELNLE TP EISV 5014
Cdd:pfam05109 502 - K A P DMTS P TSA V TTPT P NATSPT P A V TT P TPNATSPTL G KT SP TSAVTT P TPNA T S P TPAVTTP TP NATI 571
Name
Accession
Description
Interval
E-value
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
5109-5658
5.08e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 63.14
E-value: 5.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5109 P SPK L E G E L QAPD L E LS L ---- PAIHVEG LD IK A KAPKV ---- KMPDVDISVPKIEGDLKG - PKVQANL G APDINIE G - L 5178
Cdd:COG2911 27 P LAL L R G R L CIDE L A LS A sldg DRLRLDN LD LD A PEGAL sgll DLVQATLDAEGLDLASSA l DDLDLRS G GNRLTLS G n L 106
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5179 D A KVKTPSFGIS AP QVS - IPDVNVN L K G p KIK GD vpsv GL EGPDV D LQ G PE A KIKF pkfsmpkigipgv KMEGG G AEVHA 5257
Cdd:COG2911 107 S A ASLDGDLDLD AP DLA d LAALLPG L A G - SLS GD ---- GL DSLSL D AD G TL A QHRL ------------- DLDAK G EPASL 168
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5258 Q L p S L E G D L RGP D VK ------- L EGPDVS L KG P G vdlp SVNLSMPK V SGPD L D L NLK G P - S L K G D L DASV p SMKVHAPG L 5329
Cdd:COG2911 169 S L - A L S G G L DRD D GG tlsrldf L NTGRWG L AA P A ---- TLSYDDGR V TLGP L C L AGG G S l C L S G T L GGTL - DLQLRLKN L 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5330 N L SGVG gkm QVGG D GVKVP G - IDATTK L -- NVGA P DVTLR g P SL Q GDL AVSGDIKCPKVSV G APD L SLEASE G SIK L pkm 5406
Cdd:COG2911 243 P L ALLN --- PFLP D DLGLS G t LNGDAD L sg GLAN P QGDAS - L SL S GDL TLNDGLGGLPLGL G DLT L NARLAN G RLT L --- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5407 klp QFGISTP G SD - L HVNAKG P QVS G ELKGPGV D V NL KGPRISA ------- P N V DFN L E G p KVK G S L GAT G EIKG P TVG G 5478
Cdd:COG2911 316 --- DLTLDGG G LG t L SLSGSV P LAD G LPPSAPL D G NL RLDNLDL allnpll P G V LER L S G - QLN G D L RLS G TLAA P QLN G 391
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5479 G L --------- P GI GV QGLEG NL Q mpg IKSS G CDVN L P G VNVKLPT G QIS gpeikgg L K G S e V GFH G AAP -- D ISV KG PA 5547
Cdd:COG2911 392 Q L tlddgrlkl P AL GV RLTDI NL R --- LRFD G DRLT L D G LTADSGG G TLT ------- L S G T - V DLD G LSW pa D LTL KG DN 460
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5548 FN --------- MA S PESDFGINLK GP KIK G GAD V SGG - VSA P DISLGEGH LS ---- V KGSGG E WKGPQVSSA L N LD TS -- 5611
Cdd:COG2911 461 LR vlnppdyta TV S GDLTLTGTPD GP TLS G NVT V PRA r ITL P ELPPSAVS LS ddvv V VNRPP E PVPEEEAAG L P LD LD ln 540
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1079280806 5612 - KFAGGLHFS G PKVEGGV k GG QIG L QAPGLSVSGPQ G HLESGS G KVTF 5658
Cdd:COG2911 541 v NLGDDVRVR G FGLDARL - GG DLR L TGTPGGAPRLT G EINLVR G RYNA 587
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
5166-5658
8.73e-09
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 62.36
E-value: 8.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5166 ANLGAP D INIE G - L DAKVK tpsfg I S A p QVSI P DVNVN L K gpk IK GD V p SVGLEGPDVD L QGPEAKIKF pkfsmpkigip 5244
Cdd:COG2911 248 NPFLPD D LGLS G t L NGDAD ----- L S G - GLAN P QGDAS L S --- LS GD L - TLNDGLGGLP L GLGDLTLNA ----------- 306
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5245 gv KMEG G GAEVHAQ L ------- P SL E G DLRGP D VKLEGP -- D VS L KGPGV DL PSV N LSM P ---- KV SG P - DL DL N L K G -- 5308
Cdd:COG2911 307 -- RLAN G RLTLDLT L dggglgt L SL S G SVPLA D GLPPSA pl D GN L RLDNL DL ALL N PLL P gvle RL SG Q l NG DL R L S G tl 384
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5309 -- P S L K G D L DASVPSM K VH A P G LN L SGVGGKMQVG GD GVKVP G ID A TT --- K L NVGA p D V T L R G P S LQG DL AVS GD ---- 5379
Cdd:COG2911 385 aa P Q L N G Q L TLDDGRL K LP A L G VR L TDINLRLRFD GD RLTLD G LT A DS ggg T L TLSG - T V D L D G L S WPA DL TLK GD nlrv 463
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5380 IKC P KVSVGA - P DL S L EAS ------ E G SIKL P K -- MK LP QFGI S TPGSD --- LH VN AKGPQ V SG E LKGPG - V D VN L kgp R 5446
Cdd:COG2911 464 LNP P DYTATV s G DL T L TGT pdgptl S G NVTV P R ar IT LP ELPP S AVSLS ddv VV VN RPPEP V PE E EAAGL p L D LD L --- N 540
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5447 ISAPN v D FNLE G PKVKGS LG ATGEIK G p T V GG GL pgigvq G L E G NLQMP giks S G c DV N LP G VNVKLPT G Q I -- S GP EIK 5524
Cdd:COG2911 541 VNLGD - D VRVR G FGLDAR LG GDLRLT G - T P GG AP ------ R L T G EINLV ---- R G - RY N AY G QRLTIER G S I tf N GP PLD 607
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5525 GG L -------- KGSEV G fhgaapd IS V K G P A F N M -------- A S P ESD ------ FG inlkgpki K G GADV SGG VS A pdi S 5582
Cdd:COG2911 608 PY L dieavrtv DDVTA G ------- VR V T G T A S N P kitlfsdp A L P QDE ilslll FG -------- R G LDSL SGG DA A --- Q 669
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1079280806 5583 L GEGHL S VK G S GG EWKGP Q VS SAL N LD TSKFAG G LHFS G PK V EG gvk G GQIG lqa PG L S VS GPQ G h L ES G SGK VT F 5658
Cdd:COG2911 670 L ASAAA S LL G G GG GGLLG Q LG SAL G LD DLSIDT G GSGD G TS V TV --- G KYLT --- DR L Y VS YGV G - L FD G LSE VT L 738
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
5254-5673
3.27e-08
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 60.44
E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5254 EVH A QLPS L E G D L RGPDVK L EGPDVS L KGPGV D lpsv N L smp KVSGPDLD L N L K G ---- P SL K GDLD ASV P SMKVH A P - G 5328
Cdd:COG2911 57 DLD A PEGA L S G L L DLVQAT L DAEGLD L ASSAL D ---- D L --- DLRSGGNR L T L S G nlsa A SL D GDLD LDA P DLADL A A l L 129
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5329 LN L S G vggkm QVG GDG VKVPGI DA TTK L NVGAP D VTLR G PSLQGD LA V SG dikcpkvsvgap D L SLEASEGSIK L PKMKL 5408
Cdd:COG2911 130 PG L A G ----- SLS GDG LDSLSL DA DGT L AQHRL D LDAK G EPASLS LA L SG ------------ G L DRDDGGTLSR L DFLNT 192
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5409 PQF G IST P GS d L HVNAKGPQVSG - E L K G P G --- VDVN L K G P --- RISAP N VDFN L ------ EGPKVK G S L GATGEIK G PT 5475
Cdd:COG2911 193 GRW G LAA P AT - L SYDDGRVTLGP l C L A G G G slc LSGT L G G T ldl QLRLK N LPLA L lnpflp DDLGLS G T L NGDADLS G GL 271
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5476 vgg GL P GIGVQ - G L E G N L Q mpgikssgcd V N LPGVNVK L PT G QIS gpe IKGG L KGSEVGF hgaap D ISVK G PAFNMA S PE 5554
Cdd:COG2911 272 --- AN P QGDAS l S L S G D L T ---------- L N DGLGGLP L GL G DLT --- LNAR L ANGRLTL ----- D LTLD G GGLGTL S LS 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5555 SDFGIN lkg PKIKGG A DVS G GVSAPDIS L G ------------- E G H L SVKGS - G G EWKG PQ VSSA L N LD TSKFAG --- G L 5617
Cdd:COG2911 331 GSVPLA --- DGLPPS A PLD G NLRLDNLD L A llnpllpgvlerl S G Q L NGDLR l S G TLAA PQ LNGQ L T LD DGRLKL pal G V 407
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1079280806 5618 HFSGPKVEGGVK G GQIG L Q ap GL SVSGPQ G H L e SG SG K V TFPKMKI P - KF T FS G RE L 5673
Cdd:COG2911 408 RLTDINLRLRFD G DRLT L D -- GL TADSGG G T L - TL SG T V DLDGLSW P a DL T LK G DN L 461
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
3050-3469
3.32e-07
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 56.97
E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3050 DL DV S - G P KVDIDVP DV NIEG P E G KLKG P KFKMPEM nikapkismp DI DL N L kgpkvkgdmdvs LP KVE G DMK V PDVDIK 3128
Cdd:COG2982 55 DL SL S l F P WPGVTLG DV TLSN P D G FGGP P LASAERL ---------- EL DL A L ------------ LP LLS G ELE V DEITLD 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3129 GP KVDI nap DV D VQ G - PD W HLKMPKIKMPK ismpgf KG E GPEVDVNLPKADLD --------- V SG PKVDV D VPDVNIE GP 3198
Cdd:COG2982 113 GP VINL --- ER D AD G r AN W DFLLAAAAAAA ------ DA E ASAWSLDIGRLEIT dgrlvydda A SG ADLTL D DLNLTLS GP 183
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3199 D ---------- AK L K G PKFKM p EMN I KAPKISM P - D L D L N L KGPKMKGEV D -- V S LA NVE G D L KGPALDIK -- GPKID V D 3263
Cdd:COG2982 184 S ldgpfrlsgs GR L N G QPLTL - DGK I GGLLALG P y P L K L D L RSGDLRLSL D gt V D LA GLD G Q L ALSGPSLR dl LALLG V T 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3264 A P D idih GPDAK L K G pklkmp DMHVNMPKISMPEIDLN L KG S K L K GD VD V S G --- P K L E GD IKAPS LD IK -- G P EVDVSG 3338
Cdd:COG2982 263 L P E ---- PGPFS L S G ------ RLTADGDRLRLEDLKGT L GD S D L T GD LS V T G gdr P A L T GD LASDR LD LD dl L P AAPAAA 332
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3339 PKLNIEGKSKKSRFK L P --------- KFNF S GSKVQTPEVDVKGKKPDIDITGPKV D INAPDVEV - Q G KVK GS kfkmpf L 3408
Cdd:COG2982 333 AAGAPAAARGLPDAP L D lsalralda DVRL S ADSLKLGGLPLGDLAAHLTLDDGRL D LDPLSAGL y G G TLS GS ------ L 406
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1079280806 3409 SISSPK v SM P D V E L N L KSPK V K - G D L -- D I AG P ------- N LEG D FK G PKVDIK A P ------ EVN L NAP D VDVH G PD 3469
Cdd:COG2982 407 TLDARG - DP P R V A L K L SLSG V D l G P L lp D L AG F drlsgtl N GDL D LS G TGNSVA A L laslng SAS L SLG D GAIS G LN 482
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
3223-3722
6.72e-06
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 53.12
E-value: 6.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3223 D LDL NL KG PKMKGEVDV S ---------- L ANVE g D L KGPALDIKG P - KIDV D APDIDI ------ H G PDAK L K G PKLKMP D 3285
Cdd:COG2911 156 R LDL DA KG EPASLSLAL S ggldrddggt L SRLD - F L NTGRWGLAA P a TLSY D DGRVTL gplcla G G GSLC L S G TLGGTL D 234
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3286 MHVNMPKISMPEI ------ DL N L K G s K L K GD V D V SG ---- P KLEGDIKAP --- S L DIKGPEVDVSGPK L NIEGKSKKS R F 3352
Cdd:COG2911 235 LQLRLKNLPLALL npflpd DL G L S G - T L N GD A D L SG glan P QGDASLSLS gdl T L NDGLGGLPLGLGD L TLNARLANG R L 313
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3353 K L pkfnfsgskvqtp EVDVK G KKPD - IDIT G -- P KV D INA P DVEVQ G KVKGSKFKMPF L S isspk VSM P D V ELN L KS p KV 3429
Cdd:COG2911 314 T L ------------- DLTLD G GGLG t LSLS G sv P LA D GLP P SAPLD G NLRLDNLDLAL L N ----- PLL P G V LER L SG - QL 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3430 K GDL DIA G ---- P N L E G DFKGPKVDI K A P EVNLNAP D VDV hgpdw N L KMPKMK mpk FSVS GL K A EGPDVAVD L p K G DINI 3505
Cdd:COG2911 375 N GDL RLS G tlaa P Q L N G QLTLDDGRL K L P ALGVRLT D INL ----- R L RFDGDR --- LTLD GL T A DSGGGTLT L - S G TVDL 445
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3506 E G P S MNI egp DL NV egpeggl KG PKFK --- M PD MNIKA - PKI smp DIDLNLK GP KVK G D V DI slpklegdlkg P EVD I KG 3581
Cdd:COG2911 446 D G L S WPA --- DL TL ------- KG DNLR vln P PD YTATV s GDL --- TLTGTPD GP TLS G N V TV ----------- P RAR I TL 501
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3582 P KVDIN A PDVD vhgpdwhlkm PK V KM pkfsmpgf KGEG PE VDVTLPK A DIDISG p NVD V DVP - DV NIE G P -- DA K L K G pk 3658
Cdd:COG2911 502 P ELPPS A VSLS ---------- DD V VV -------- VNRP PE PVPEEEA A GLPLDL - DLN V NLG d DV RVR G F gl DA R L G G -- 560
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1079280806 3659 fkmpemnikapkismpdf DL N L K G ----- P KMK G DVVV slpk V E G DLK -- G PEVD I K ------- GP KV D idt P DIN IE 3722
Cdd:COG2911 561 ------------------ DL R L T G tpgga P RLT G EINL ---- V R G RYN ay G QRLT I E rgsitfn GP PL D --- P YLD IE 613
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
192-681
7.07e-06
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 52.73
E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 192 ISNV D V et Q SG KTVIR L p SG SGA A SPTGSAV D IR A --- GAIS A SG P E L Q G aghskl QVTMP G I kvgg SGVNVN A K G LDLG 268
Cdd:COG2911 88 LDDL D L -- R SG GNRLT L - SG NLS A ASLDGDL D LD A pdl ADLA A LL P G L A G ------ SLSGD G L ---- DSLSLD A D G TLAQ 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 269 G R -- GGVQVPAVDI S SS L G G RAVEVQ G PS L ESG D H gkikfptmkvpkfg VS TGR E G QTPK A G L RVSAPE V SV G H ---- K G 342
Cdd:COG2911 155 H R ld LDAKGEPASL S LA L S G GLDRDD G GT L SRL D F -------------- LN TGR W G LAAP A T L SYDDGR V TL G P lcla G G 220
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 343 G KPG L TIQAP --- Q L EVSVPSANIEG L EGK L - KGPQIT G p S L E GD LG L K G akpqghigv DASA PQ IGG S ITGP - SVEVQA 417
Cdd:COG2911 221 G SLC L SGTLG gtl D L QLRLKNLPLAL L NPF L p DDLGLS G - T L N GD AD L S G --------- GLAN PQ GDA S LSLS g DLTLND 290
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 418 PDIDVQGPGSK L NV pkmkvp KFSVSGAKGE etg I D V TL PT G EVTVPGV SG D V S L PEIATG gl EGKMK G T kvktpemiiqk 497
Cdd:COG2911 291 GLGGLPLGLGD L TL ------ NARLANGRLT --- L D L TL DG G GLGTLSL SG S V P L ADGLPP -- SAPLD G N ----------- 348
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 498 pk ISMQDV DL S L GS P ----------- K L K GD IKV S ---- AP GVQ G DVKGPQVA LK GSR -- V DIETP NL EGTLT G P R -- L G 558
Cdd:COG2911 349 -- LRLDNL DL A L LN P llpgvlerlsg Q L N GD LRL S gtla AP QLN G QLTLDDGR LK LPA lg V RLTDI NL RLRFD G D R lt L D 426
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 559 SPSGKT G TCRISM S ---------- EV DL NVAA -------- P KVKGG V DVT L -------- P RVE G K V K VP EVDVRG P KVDV 612
Cdd:COG2911 427 GLTADS G GGTLTL S gtvdldglsw PA DL TLKG dnlrvlnp P DYTAT V SGD L tltgtpdg P TLS G N V T VP RARITL P ELPP 506
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1079280806 613 SA PDVEA hgpew NLKMPKMKMPTFSTPG A K G EGP D VHMTL pkgdis IS G PK V N V EAPDVNLE g LGG K L K 681
Cdd:COG2911 507 SA VSLSD ----- DVVVVNRPPEPVPEEE A A G LPL D LDLNV ------ NL G DD V R V RGFGLDAR - LGG D L R 563
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
5158-5530
1.76e-05
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 51.19
E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5158 D L KGP --- K V QANL G AP d IN I E G - L DAKV k T P SF G ISAPQ V SI -- PD -------------- VNVN L k G P KIK G D -- V PSV 5215
Cdd:COG2982 33 R L RPL ier Q V SEAT G RE - VT I D G d L SLSL - F P WP G VTLGD V TL sn PD gfggpplasaerle LDLA L - L P LLS G E le V DEI 109
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5216 G L E GP DVD L Q ------------- GPE A KIKFPKF S MPKIG I PGVKMEG G ------- GAEVHAQ L PS L EGD L R GP D ----- 5270
Cdd:COG2982 110 T L D GP VIN L E rdadgranwdfll AAA A AAADAEA S AWSLD I GRLEITD G rlvydda ASGADLT L DD L NLT L S GP S ldgpf 189
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5271 ----- VK L E G PDVS L K G P - G VD L PSVNLSM - PKVSGP DL D L N L K G ---- PS L K G D L DA S V PS MK ------- V HA P GLNLS 5332
Cdd:COG2982 190 rlsgs GR L N G QPLT L D G K i G GL L ALGPYPL k LDLRSG DL R L S L D G tvdl AG L D G Q L AL S G PS LR dllallg V TL P EPGPF 269
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5333 GVG G KMQVG GD GVKVPGI datt K LNV G ap D VT L R G --------- P S L Q GDLA v S GDIKCPK - VSVGAPDLSLE A SEGSIK 5402
Cdd:COG2982 270 SLS G RLTAD GD RLRLEDL ---- K GTL G -- D SD L T G dlsvtggdr P A L T GDLA - S DRLDLDD l LPAAPAAAAAG A PAAARG 342
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 5403 LP KMK L PQFGISTPGS D LHVN A KGPQVS G - E L KGPGVDVN L KGP R ISAPNVDFN L E G PKVK GSL GATGEIKG P T V G -- GG 5479
Cdd:COG2982 343 LP DAP L DLSALRALDA D VRLS A DSLKLG G l P L GDLAAHLT L DDG R LDLDPLSAG L Y G GTLS GSL TLDARGDP P R V A lk LS 422
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1079280806 5480 L P G IGVQG L EGN L QMP g IKS SG c DV N L pgv NVK L PTGQI S GPEIKGG L K GS 5530
Cdd:COG2982 423 L S G VDLGP L LPD L AGF - DRL SG - TL N G --- DLD L SGTGN S VAALLAS L N GS 468
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
3239-3579
2.12e-04
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 47.86
E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3239 V SL ANVE gd L KG P A l DIKG P KIDVDAPD I DIH g P DAK L KG p KLKMPDM hvnmp KISMP E ID L NLKGSK l KGDVDVSGPKL 3318
Cdd:pfam05170 66 L SL SDIT -- L AS P Q - GDAT P LVSLEQVK I SLS - P LPL L RK - QIEIDSI ----- RLDGA E LA L ERLKQG - NWNWQELIQNQ 134
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3319 EGDIKAPSLDIKG P EVD V SGPK L N I EG - KSKKSRFKL pkf NFSG S KVQTPEVDVKGKKPDI di T GP KV dina PDVEVQGK 3397
Cdd:pfam05170 135 QNQASNAPTQQPQ P TWP V AAWS L P I GR i QVSNGQVTI --- DDKA S QKILKDINLELQVSTL -- Y GP SF ---- NWSKITIS 205
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3398 V KG SKFKMP F L S ----- I S S PKV S MPDVELNLKSPKVKGDLDIAG P - NLEGDF K GPKVDIKAPEV ----- NL NAP D V D VH 3466
Cdd:pfam05170 206 G KG DQDPQS F G S qvnvt I L S GEI S GEALRGSTSTGGMLLLQTLSS P i YHINSL K LLNAQLELDGT lwdnl NL SIE D L D LK 285
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3467 GPD W NLKMPKMKMPKFSVSG L KAEGPDVAVD LP KGDI NI E -- GP S MNIEGPDLN V E G P egg L KGPKFKMPDMNIKAP K IS 3544
Cdd:pfam05170 286 ASG W KSITVNLALTADELDS L ANQAELPGAN LP DTPQ NI T lg EL S LSFKTGRVQ V S G S --- L NSLTLNLDYLSFDGK K WV 362
330 340 350
....*....|....*....|....*....|....*.
gi 1079280806 3545 - MP DIDL NLKG P KVK gdvdi SL PKL E G D L KG PE V D I 3579
Cdd:pfam05170 363 g SS DIDL SNRL P QPQ ----- PR PKL R G K L SS PE L D L 393
PDZ2-PDZRN4-like
cd06716 PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related ...
22-56
3.14e-04
PDZ domain 2 of PDZ domain-containing RING finger protein 4 (PDZRN4), PDZRN3-B, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 1 of PDZRN4, PDZRN3-B, and related domains. PDZRN4 (also known as ligand of numb protein X 4, and SEMACAP3-like protein) contains an N-terminal RING domain and two tandem repeat PDZ domains. It is involved in the progression of cancer, including human liver cancer and breast cancer, and may contribute to the tumorigenesis of rectal adenocarcinoma. Danio rerio PDZRN3-B may participate in neurogenesis: the first PDZ domain of Danio rerio Pdzrn3 interacts with Kidins220 (Kinase D-interacting substrate 220 kD, also named Ankyrin Repeat-Rich Membrane Spanning), a crucial mediator of signal transduction in neural tissues. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PDZRN4-like family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
Pssm-ID: 467200 [Multi-domain]
Cd Length: 88
Bit Score: 42.65
E-value: 3.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1079280806 22 GLT IAQ R D D ----- G VF V Q EV TQ NS P AA RT G VVK EGDQI V 56
Cdd:cd06716 18 GLT LCY R T D deedt G IY V S EV DP NS I AA KD G RIR EGDQI L 57
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
4532-4945
3.25e-04
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 46.96
E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4532 K I K GD MDI S V pklegdlkgpkvdvk G P KV G IDTP D IDIHG P E G KLKG P KFKMPD L H L kapkismp EVD L N -- L K G pkvkg 4609
Cdd:COG2982 51 T I D GD LSL S L --------------- F P WP G VTLG D VTLSN P D G FGGP P LASAER L E L -------- DLA L L pl L S G ----- 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4610 dm DISLPKVE gd L K GP EVDI - RD P kvdidvpdvdv Q G - PD W HLKMPK vkmpkfsmpgfkgegpdvdvnl PK A DI D VSGPK 4687
Cdd:COG2982 103 -- ELEVDEIT -- L D GP VINL e RD A ----------- D G r AN W DFLLAA ---------------------- AA A AA D AEASA 145
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4688 VDV D VPDVN I EGPDAKLKGPKFKM pemsikap KISMP D ID L N L K GP KVK G DVDVTL pkv E G D L K G PEADIK G p K VDINTP 4767
Cdd:COG2982 146 WSL D IGRLE I TDGRLVYDDAASGA -------- DLTLD D LN L T L S GP SLD G PFRLSG --- S G R L N G QPLTLD G - K IGGLLA 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4768 ------ DV D VHGP D WH L KM pkvk MPKFSMP G FK G egpdv DVS L PKADIDVSGPKVD V DI P dvni E GPDAK L K G P kfkmpe 4841
Cdd:COG2982 214 lgpypl KL D LRSG D LR L SL ---- DGTVDLA G LD G ----- QLA L SGPSLRDLLALLG V TL P ---- E PGPFS L S G R ------ 274
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4842 INIKAPKISIP D VDLD L KGPKVK GD FD V S --- V P KVE G T L KGPEV DL kg PR L --- DFEGPD A KLSGPSLKM P SLEISAPK 4915
Cdd:COG2982 275 LTADGDRLRLE D LKGT L GDSDLT GD LS V T ggd R P ALT G D L ASDRL DL -- DD L lpa APAAAA A GAPAAARGL P DAPLDLSA 352
410 420 430
....*....|....*....|....*....|
gi 1079280806 4916 VT A P D V D LH L K A PKIGFS G PK L EGGEVD L K 4945
Cdd:COG2982 353 LR A L D A D VR L S A DSLKLG G LP L GDLAAH L T 382
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
3431-3911
5.71e-04
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 46.32
E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3431 G D LDI A G P N leg DFKG P K V DIKAPEVN L N apdvdvhg P D w N L KMPKMKMPK fsvsg LKAE G PDV A VDLP K - G DI N IE -- G 3507
Cdd:pfam05170 69 S D ITL A S P Q --- GDAT P L V SLEQVKIS L S -------- P L - P L LRKQIEIDS ----- IRLD G AEL A LERL K q G NW N WQ el I 131
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3508 PSMNIEGPDLNVEG P EGGLKGPKFKM P DMN I KAPKISMPDI D LNLK gp K VKG D VDIS L pk LEGD L K GP EVDIKGPKVDIN 3587
Cdd:pfam05170 132 QNQQNQASNAPTQQ P QPTWPVAAWSL P IGR I QVSNGQVTID D KASQ -- K ILK D INLE L -- QVST L Y GP SFNWSKITISGK 207
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3588 A p D V D VHGPDWHLKMPKVK m PKF S MPGFK G EGP evd VTLPKADIDI S G P NVDVD vpdvniegp DA KL KGPKFKMPEMNIK 3667
Cdd:pfam05170 208 G - D Q D PQSFGSQVNVTILS - GEI S GEALR G STS --- TGGMLLLQTL S S P IYHIN --------- SL KL LNAQLELDGTLWD 273
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3668 APKI S MP D F DL NLK G P K MKGDVV ---- VS L PKVEGDLKG P EVDI kgpkvd I DTP D - I NIEGSEGK FK GPKFKI p EMH L KA 3742
Cdd:pfam05170 274 NLNL S IE D L DL KAS G W K SITVNL alta DE L DSLANQAEL P GANL ------ P DTP Q n I TLGELSLS FK TGRVQV - SGS L NS 346
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3743 PKISMPDIDLNL K GPKVKG D V D V S L -------- PK ME G D L KG PE V D I ------------ K GPKVDIN A PDVDVQ G PD whl 3802
Cdd:pfam05170 347 LTLNLDYLSFDG K KWVGSS D I D L S N rlpqpqpr PK LR G K L SS PE L D L dnllpiktavaa K SRAPEWD A SGLSAD G AN --- 423
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 3803 k M P KVKM P KFS mp G FK - G EGP DV DV N LP K adld V SGPKVD I DVPDVNIEGPE G K L KGPKF K MP -------- EMNIKAP K I 3873
Cdd:pfam05170 424 - L P LPVE P FLW -- G VW q G MDA DV SA N ID K ---- V TYSGLP I SDLKTKLRSEG G V L QLSRL K GG lyggylea GAQLDLS K K 496
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1079280806 3874 SMP - DIDL N L K GPKV K GDM - D VSLPK - VE G DMQV p D L D IK G 3911
Cdd:pfam05170 497 PAT y RLKI N A K NIPL K PLL p D LFKMF s TD G LLDI - D A D LQ G 536
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
4326-4631
1.17e-03
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 45.55
E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4326 MPGFKGE G PDVDVTL --- PKADIEISGPKVDID A PDVSIEG P DAKLKGPKFKM P EMN I KAPKISMPDI D FNLKGPKVKGD 4402
Cdd:pfam05170 105 IDSIRLD G AELALER lkq GNWNWQELIQNQQNQ A SNAPTQQ P QPTWPVAAWSL P IGR I QVSNGQVTID D KASQKILKDIN 184
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4403 VDVSLP kvegdlkgpei DIK GPS L didt PDVN I EG p E GK LKGPKFKMP --- EMN I KAPK IS MPDFDLHLKGPKVKGDVDV 4479
Cdd:pfam05170 185 LELQVS ----------- TLY GPS F ---- NWSK I TI - S GK GDQDPQSFG sqv NVT I LSGE IS GEALRGSTSTGGMLLLQTL 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4480 S L P KVESD lkgpevdiegp EG KL KGPKFKMPDVHFKSPQI S MS D I DL NLK G P K IKGD ---- MDISVPK L EGDLKG P KVDV 4555
Cdd:pfam05170 249 S S P IYHIN ----------- SL KL LNAQLELDGTLWDNLNL S IE D L DL KAS G W K SITV nlal TADELDS L ANQAEL P GANL 317
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4556 kgpkvg I DTP D - I DIHGPEGKL K GPKFKM p DLH L KAPKISMP ev D L NLK G P K VK G DM DI S L ---------- PK VE G D L KG 4624
Cdd:pfam05170 318 ------ P DTP Q n I TLGELSLSF K TGRVQV - SGS L NSLTLNLD -- Y L SFD G K K WV G SS DI D L snrlpqpqpr PK LR G K L SS 388
....*..
gi 1079280806 4625 PE V D IRD 4631
Cdd:pfam05170 389 PE L D LDN 395
Herpes_BLLF1
pfam05109 Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
4879-5014
1.28e-03
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain]
Cd Length: 886
Bit Score: 45.68
E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079280806 4879 K G PE VDLKG P R L D --- F EG P DAKLSG PS LKMPSLEIS AP KV T A P D V --- D LHLKA P KIGF SG --------- P KLE G G E V d 4943
Cdd:pfam05109 423 K A PE STTTS P T L N ttg F AA P NTTTGL PS STHVPTNLT AP AS T G P T V sta D VTSPT P AGTT SG aspvtpsps P RDN G T E S - 501
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1079280806 4944 l K G P KVEA P SLD V HMDS P DINIEG P D V KI P KFKKPKFGF G AK SP KADIKS P SLDV T V P EAELNLE TP EISV 5014
Cdd:pfam05109 502 - K A P DMTS P TSA V TTPT P NATSPT P A V TT P TPNATSPTL G KT SP TSAVTT P TPNA T S P TPAVTTP TP NATI 571
PDZ_canonical
cd00136 canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
22-56
1.49e-03
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.
Pssm-ID: 467153 [Multi-domain]
Cd Length: 81
Bit Score: 40.60
E-value: 1.49e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1079280806 22 G LT I A --- QRDD G V FV QE V TQNS PAAR T G VVKE GD Q I V 56
Cdd:cd00136 13 G FS I R ggk DGGG G I FV SR V EPGG PAAR D G RLRV GD R I L 50
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
