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Conserved domains on  [gi|1012443728|ref|NP_001308670|]
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intraflagellar transport protein 56 isoform 8 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-206 2.18e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  33 LLSKRDFTGAITLleFKRHVGEEEEDTNLW--IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQA 110
Cdd:COG0457    52 YLRLGRYEEALAD--YEQALELDPDDAEALnnLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 111 EAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYY 189
Cdd:COG0457   130 IEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209

                         170
                  ....*....|....*..
gi 1012443728 190 LRQDDVQEAYNLIKDLE 206
Cdd:COG0457   210 KLAILTLAALAELLLLA 226
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-348 5.60e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 5.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEF 149
Cdd:COG2956    22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRaEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 150 AKELIRHNlvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKgvvnAALGQEMGS 229
Cdd:COG2956   102 LLELDPDD---------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 230 RDHMKIAQQFFQLVGGSASECdtIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEa 309
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDC--ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE- 233

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1012443728 310 fLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKM 348
Cdd:COG2956   234 -LLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-206 2.18e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  33 LLSKRDFTGAITLleFKRHVGEEEEDTNLW--IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQA 110
Cdd:COG0457    52 YLRLGRYEEALAD--YEQALELDPDDAEALnnLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 111 EAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYY 189
Cdd:COG0457   130 IEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209

                         170
                  ....*....|....*..
gi 1012443728 190 LRQDDVQEAYNLIKDLE 206
Cdd:COG0457   210 KLAILTLAALAELLLLA 226
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-348 5.60e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 5.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEF 149
Cdd:COG2956    22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRaEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 150 AKELIRHNlvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKgvvnAALGQEMGS 229
Cdd:COG2956   102 LLELDPDD---------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 230 RDHMKIAQQFFQLVGGSASECdtIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEa 309
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDC--ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE- 233

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1012443728 310 fLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKM 348
Cdd:COG2956   234 -LLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
TPR_19 pfam14559
Tetratricopeptide repeat;
71-112 2.81e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 2.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1012443728  71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-206 2.18e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  33 LLSKRDFTGAITLleFKRHVGEEEEDTNLW--IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQA 110
Cdd:COG0457    52 YLRLGRYEEALAD--YEQALELDPDDAEALnnLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 111 EAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYY 189
Cdd:COG0457   130 IEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209

                         170
                  ....*....|....*..
gi 1012443728 190 LRQDDVQEAYNLIKDLE 206
Cdd:COG0457   210 KLAILTLAALAELLLLA 226
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
55-239 5.60e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 5.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  55 EEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKsrLQNRLLFHLAHKA 134
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALE--LDPDDAEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 135 ELKSLMDNasssFEFAKELIRHnlvvfrggegALQVLPplvdVIPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQ 211
Cdd:COG0457    84 LALQALGR----YEEALEDYDK----------ALELDP----DDAEALYNLGLALLELGRYDEAieaYERALELDPDDAD 145

                         170       180
                  ....*....|....*....|....*...
gi 1012443728 212 EYILKGVVNAALGQEMGSRDHMKIAQQF 239
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAA 173
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-113 1.64e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 1.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG0457    18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97


                  .
gi 1012443728 113 A 113
Cdd:COG0457    98 D 98
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 31-113 5.48e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 5.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  31 EELLSKRDFTGAITLLEfkRHVGEEEEDTNLW--IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYK 108
Cdd:COG4783    12 QALLLAGDYDEAEALLE--KALELDPDNPEAFalLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89


                  ....*
gi 1012443728 109 QAEAA 113
Cdd:COG4783    90 EALAL 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 27-153 9.16e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 9.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  27 IPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGM 106
Cdd:COG5010    24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1012443728 107 YKQAEAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEFAKEL 153
Cdd:COG5010   104 KDEAKEYYEKALALSPDNpNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 70-211 2.85e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.44  E-value: 2.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  70 LGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKAsksrLQNRLLFHLAHKAELKSLMDNasSSFEF 149
Cdd:COG3914    91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA----LALNPDFAEAYLNLGEALRRL--GRLEE 164

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1012443728 150 AKELIRHnlvvfrggegALQVLPPLvdviPEARLNLVIYYLRQDDVQEA---YNLIKDLEPTTPQ 211
Cdd:COG3914   165 AIAALRR----------ALELDPDN----AEALNNLGNALQDLGRLEEAiaaYRRALELDPDNAD 215
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-238 2.94e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 2.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  55 EEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQN-RLLFHLAH- 132
Cdd:COG2956    40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDaEALRLLAEi 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 133 ----------KAELKSLM----DNASSSFEFAKELIRHNLVvfrggEGALQVLPPLVDVIP---EARLNLVIYYLRQDDV 195
Cdd:COG2956   120 yeqegdwekaIEVLERLLklgpENAHAYCELAELYLEQGDY-----DEAIEALEKALKLDPdcaRALLLLAELYLEQGDY 194

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1012443728 196 QEA---YNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQ 238
Cdd:COG2956   195 EEAiaaLERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 45-113 4.19e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 4.19e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012443728  45 LLEFKRHVGEEEEDTNLWI--GYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAA 113
Cdd:COG4235     3 IARLRQALAANPNDAEGWLllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-348 5.60e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 5.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEF 149
Cdd:COG2956    22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRaEALLELAQDYLKAGLLDRAEELLEK 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 150 AKELIRHNlvvfrggegalqvlpplvdviPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKgvvnAALGQEMGS 229
Cdd:COG2956   102 LLELDPDD---------------------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 230 RDHMKIAQQFFQLVGGSASECdtIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEa 309
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDC--ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE- 233

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1012443728 310 fLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKM 348
Cdd:COG2956   234 -LLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
66-112 7.82e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 7.82e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1012443728  66 CAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA 47
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 32-113 9.05e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.82  E-value: 9.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  32 ELLSKRDFTGAITLLE--FKRHVGEE-EEDTNLWIGYCAFHLGDYKRALEEYENATK---EENCNSEVWVNLACTYFFLG 105
Cdd:COG1729     2 ALLKAGDYDEAIAAFKafLKRYPNSPlAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELG 81


                  ....*...
gi 1012443728 106 MYKQAEAA 113
Cdd:COG1729    82 DYDKARAT 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-227 1.44e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 1.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  31 EELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQA 110
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 111 EAAGFKASKSRLQN-RLLFHLahkAELKSLMDNASSSFEFAKELIRHNlvvfrggegalqvlPPLVDVIPearlNLVIYY 189
Cdd:COG2956   164 IEALEKALKLDPDCaRALLLL---AELYLEQGDYEEAIAALERALEQD--------------PDYLPALP----RLAELY 222

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1012443728 190 LRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEM 227
Cdd:COG2956   223 EKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG 260
TPR_19 pfam14559
Tetratricopeptide repeat;
71-112 2.81e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 2.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1012443728  71 GDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
64-113 3.00e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 3.00e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1012443728  64 GYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAA 113
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED 129
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 30-197 3.48e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.98  E-value: 3.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  30 LEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQ 109
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 110 AEAAGFKASKSRLQN-RLLFHLAHKAELKSLMDNASSSFEFAKEL------IRHNLVVFRGGEGALQVLPPLVDVI---- 178
Cdd:COG3914   165 AIAALRRALELDPDNaEALNNLGNALQDLGRLEEAIAAYRRALELdpdnadAHSNLLFALRQACDWEVYDRFEELLaala 244

                         170       180
                  ....*....|....*....|.
gi 1012443728 179 --PEARLNLVIYYLRQDDVQE 197
Cdd:COG3914   245 rgPSELSPFALLYLPDDDPAE 265
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-238 4.63e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  63 IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAagfkasksrlqnrllfhLAHKaelkslmdn 142
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIV-----------------LLHE--------- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728 143 asssfefakelirhnlvvfrggegALQVLPPLvdviPEARLNLVIYYLRQDDVQEAYNLIK---DLEPTTPQEYILKGVV 219
Cdd:COG4783    64 ------------------------ALELDPDE----PEARLNLGLALLKAGDYDEALALLEkalKLDPEHPEAYLRLARA 115

                         170
                  ....*....|....*....
gi 1012443728 220 NAALGQEMGSRDHMKIAQQ 238
Cdd:COG4783   116 YRALGRPDEAIAALEKALE 134
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-113 9.52e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.53  E-value: 9.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012443728  33 LLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEeYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                  .
gi 1012443728 113 A 113
Cdd:COG3063    81 Y 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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