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Conserved domains on  [gi|1005261259|ref|NP_001307983|]
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serglycin isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Serglycin super family cl04486
Serglycin; Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. ...
 19-95 1.56e-21

Serglycin; Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan.


The actual alignment was detected with superfamily member pfam04360:

Pssm-ID: 427895  Cd Length: 149  Bit Score: 82.50  E-value: 1.56e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005261259  19 SRKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDYQLVDESDAFHDNLRSLDRNLPSDSQDLGQHG 95
Cdd:pfam04360  73 FSMTNLQNLNDVFPLSEDYSGSGSGSGSGSGSGSGSGFLTEIEQEYQPVDENDAFYYNFRPLRRNLPSDNQDLGQDG 149
 
Name Accession Description Interval E-value
Serglycin pfam04360
Serglycin; Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. ...
 19-95 1.56e-21

Serglycin; Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan.


Pssm-ID: 427895  Cd Length: 149  Bit Score: 82.50  E-value: 1.56e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005261259  19 SRKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDYQLVDESDAFHDNLRSLDRNLPSDSQDLGQHG 95
Cdd:pfam04360  73 FSMTNLQNLNDVFPLSEDYSGSGSGSGSGSGSGSGSGFLTEIEQEYQPVDENDAFYYNFRPLRRNLPSDNQDLGQDG 149
 
Name Accession Description Interval E-value
Serglycin pfam04360
Serglycin; Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. ...
 19-95 1.56e-21

Serglycin; Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan.


Pssm-ID: 427895  Cd Length: 149  Bit Score: 82.50  E-value: 1.56e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1005261259  19 SRKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDYQLVDESDAFHDNLRSLDRNLPSDSQDLGQHG 95
Cdd:pfam04360  73 FSMTNLQNLNDVFPLSEDYSGSGSGSGSGSGSGSGSGFLTEIEQEYQPVDENDAFYYNFRPLRRNLPSDNQDLGQDG 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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