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Conserved domains on  [gi|984880785|ref|NP_001306165|]
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large ribosomal subunit protein eL34 [Homo sapiens]

Protein Classification

60S ribosomal protein L34( domain architecture ID 10471915)

60S ribosomal protein L34 is a component of the large ribosomal subunit

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L34e pfam01199
Ribosomal protein L34e;
1-96 6.71e-47

Ribosomal protein L34e;


:

Pssm-ID: 426119  Cd Length: 94  Bit Score: 145.73  E-value: 6.71e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785    1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGG 80
Cdd:pfam01199   1 MVQRVTYRRRLSYNTRSNKRRVVKTPGGRLVYQYVKKKGKGPK--CGDCGKRLNGIPALRPAELRRLSKSKKTVSRAYGG 78
                          90
                  ....*....|....*.
gi 984880785   81 SMCAKCVRDRIKRAFL 96
Cdd:pfam01199  79 SLCAKCVRERIVRAFL 94
 
Name Accession Description Interval E-value
Ribosomal_L34e pfam01199
Ribosomal protein L34e;
1-96 6.71e-47

Ribosomal protein L34e;


Pssm-ID: 426119  Cd Length: 94  Bit Score: 145.73  E-value: 6.71e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785    1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGG 80
Cdd:pfam01199   1 MVQRVTYRRRLSYNTRSNKRRVVKTPGGRLVYQYVKKKGKGPK--CGDCGKRLNGIPALRPAELRRLSKSKKTVSRAYGG 78
                          90
                  ....*....|....*.
gi 984880785   81 SMCAKCVRDRIKRAFL 96
Cdd:pfam01199  79 SLCAKCVRERIVRAFL 94
PTZ00074 PTZ00074
60S ribosomal protein L34; Provisional
1-117 1.15e-39

60S ribosomal protein L34; Provisional


Pssm-ID: 185429  Cd Length: 135  Bit Score: 129.04  E-value: 1.15e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785   1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGG 80
Cdd:PTZ00074   1 MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPK--CGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGG 78
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 984880785  81 SMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK 117
Cdd:PTZ00074  79 VLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKKQK 115
 
Name Accession Description Interval E-value
Ribosomal_L34e pfam01199
Ribosomal protein L34e;
1-96 6.71e-47

Ribosomal protein L34e;


Pssm-ID: 426119  Cd Length: 94  Bit Score: 145.73  E-value: 6.71e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785    1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGG 80
Cdd:pfam01199   1 MVQRVTYRRRLSYNTRSNKRRVVKTPGGRLVYQYVKKKGKGPK--CGDCGKRLNGIPALRPAELRRLSKSKKTVSRAYGG 78
                          90
                  ....*....|....*.
gi 984880785   81 SMCAKCVRDRIKRAFL 96
Cdd:pfam01199  79 SLCAKCVRERIVRAFL 94
PTZ00074 PTZ00074
60S ribosomal protein L34; Provisional
1-117 1.15e-39

60S ribosomal protein L34; Provisional


Pssm-ID: 185429  Cd Length: 135  Bit Score: 129.04  E-value: 1.15e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785   1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGG 80
Cdd:PTZ00074   1 MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPK--CGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGG 78
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 984880785  81 SMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK 117
Cdd:PTZ00074  79 VLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKKQK 115
PLN03166 PLN03166
60S ribosomal protein L34; Provisional
1-96 2.41e-20

60S ribosomal protein L34; Provisional


Pssm-ID: 178710  Cd Length: 96  Bit Score: 78.82  E-value: 2.41e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785   1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLM--RLSKTKKHVSRAY 78
Cdd:PLN03166   1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPK--CPVTGKRIQGIPHLRPAEYKrsRLSRNRRTVNRAY 78
                         90
                 ....*....|....*...
gi 984880785  79 GGSMCAKCVRDRIKRAFL 96
Cdd:PLN03166  79 GGVLSGSAVRERIIRAFL 96
rpl34e PRK04059
50S ribosomal protein L34e; Validated
10-94 2.02e-10

50S ribosomal protein L34e; Validated


Pssm-ID: 179734  Cd Length: 88  Bit Score: 53.09  E-value: 2.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984880785  10 RLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKsaCGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRD 89
Cdd:PRK04059   3 APRYRSRSLRRVYVRTPGGRTVIHYERKKPSKAK--CAICGKPLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCPKCLKR 80

                 ....*
gi 984880785  90 RIKRA 94
Cdd:PRK04059  81 LIKAK 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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