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Conserved domains on  [gi|974141089|ref|NP_001305797|]
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docking protein 1 isoform d [Homo sapiens]

Protein Classification

PH domain-containing protein( domain architecture ID 106840)

Pleckstrin homology (PH) domain-containing protein may be involved in targeting a protein to the appropriate cellular location or interacting with a binding partner

CATH:  2.30.29.30
Gene Ontology:  GO:0005515

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH-like super family cl17171
Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like ...
6-119 4.61e-52

Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.


The actual alignment was detected with superfamily member cd14676:

Pssm-ID: 473070  Cd Length: 113  Bit Score: 162.19  E-value: 4.61e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089   6 MEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSGGGRGSSRrLDCKVIRLAECVSVAPVTVETPPEPG 85
Cdd:cd14676    1 KEGQLYLQQQKFFGKKWRKFWAVLYPASPCGVARLEFFEGKGGPSGGKPSKRE-SDRKVIRLSDCVSVAPAGGESSPPRD 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 974141089  86 ATAFRLDTAQRSHLLAADAPSSAAWVQTLCRNAF 119
Cdd:cd14676   80 TAAFLLETTEKLYLLAAEAAERADWVQKLCELAF 113
 
Name Accession Description Interval E-value
PH_DOK1,2,3 cd14676
Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family ...
6-119 4.61e-52

Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. In general, PH domains have diverse functions, but are generally involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270195  Cd Length: 113  Bit Score: 162.19  E-value: 4.61e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089   6 MEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSGGGRGSSRrLDCKVIRLAECVSVAPVTVETPPEPG 85
Cdd:cd14676    1 KEGQLYLQQQKFFGKKWRKFWAVLYPASPCGVARLEFFEGKGGPSGGKPSKRE-SDRKVIRLSDCVSVAPAGGESSPPRD 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 974141089  86 ATAFRLDTAQRSHLLAADAPSSAAWVQTLCRNAF 119
Cdd:cd14676   80 TAAFLLETTEKLYLLAAEAAERADWVQKLCELAF 113
PH pfam00169
PH domain; PH stands for pleckstrin homology.
5-116 1.37e-06

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 44.86  E-value: 1.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089    5 VMEGPLFLQSQRFGtKRWRKTWAVLYPASphgvarLEFFDHKGSSSGGGRgssrrldCKVIRLAECVSVAPVTVETPPEP 84
Cdd:pfam00169   2 VKEGWLLKKGGGKK-KSWKKRYFVLFDGS------LLYYKDDKSGKSKEP-------KGSISLSGCEVVEVVASDSPKRK 67
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 974141089   85 GATAFRLDTAQ--RSHLLAADAPSSA-AWVQTLCR 116
Cdd:pfam00169  68 FCFELRTGERTgkRTYLLQAESEEERkDWIKAIQS 102
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
5-116 2.13e-05

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 41.38  E-value: 2.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089     5 VMEGPLFLQSQRFGtKRWRKTWAVLYPasphgvARLEFFDHKGSSSGGGRGssrrldcKVIRLAECVSVAPVTVETPPEP 84
Cdd:smart00233   2 IKEGWLYKKSGGGK-KSWKKRYFVLFN------STLLYYKSKKDKKSYKPK-------GSIDLSGCTVREAPDPDSSKKP 67
                           90       100       110
                   ....*....|....*....|....*....|....
gi 974141089    85 GatAFRLDTAQR-SHLLAADAPSSA-AWVQTLCR 116
Cdd:smart00233  68 H--CFEIKTSDRkTLLLQAESEEEReKWVEALRK 99
 
Name Accession Description Interval E-value
PH_DOK1,2,3 cd14676
Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family ...
6-119 4.61e-52

Pleckstrin homology (PH) domain of Downstream of tyrosine kinase 1, 2, and 3; The Dok family adapters are phosphorylated by different protein tyrosine kinases. Dok proteins are involved in processes such as modulation of cell differentiation and proliferation, as well as in control of the cell spreading and migration The Dok protein contains an N-terminal pleckstrin homology (PH) domain followed by a central phosphotyrosine binding (PTB) domain, which has a PH-like fold, and a proline- and tyrosine-rich C-terminal tail. The PH domain is binds to acidic phospholids and localizes proteins to the plasma membrane. There are 7 mammalian Dok members: Dok-1 to Dok-7. Dok-1 and Dok-2 act as negative regulators of the Ras-Erk pathway downstream of many immunoreceptor-mediated signaling systems, and it is believed that recruitment of p120 rasGAP by Dok-1 and Dok-2 is critical to their negative regulation. Dok-3 is a negative regulator of the activation of JNK and mobilization of Ca2+ in B-cell receptor-mediated signaling, interacting with SHIP-1 and Grb2. In general, PH domains have diverse functions, but are generally involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270195  Cd Length: 113  Bit Score: 162.19  E-value: 4.61e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089   6 MEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSGGGRGSSRrLDCKVIRLAECVSVAPVTVETPPEPG 85
Cdd:cd14676    1 KEGQLYLQQQKFFGKKWRKFWAVLYPASPCGVARLEFFEGKGGPSGGKPSKRE-SDRKVIRLSDCVSVAPAGGESSPPRD 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 974141089  86 ATAFRLDTAQRSHLLAADAPSSAAWVQTLCRNAF 119
Cdd:cd14676   80 TAAFLLETTEKLYLLAAEAAERADWVQKLCELAF 113
PH pfam00169
PH domain; PH stands for pleckstrin homology.
5-116 1.37e-06

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 44.86  E-value: 1.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089    5 VMEGPLFLQSQRFGtKRWRKTWAVLYPASphgvarLEFFDHKGSSSGGGRgssrrldCKVIRLAECVSVAPVTVETPPEP 84
Cdd:pfam00169   2 VKEGWLLKKGGGKK-KSWKKRYFVLFDGS------LLYYKDDKSGKSKEP-------KGSISLSGCEVVEVVASDSPKRK 67
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 974141089   85 GATAFRLDTAQ--RSHLLAADAPSSA-AWVQTLCR 116
Cdd:pfam00169  68 FCFELRTGERTgkRTYLLQAESEEERkDWIKAIQS 102
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
5-116 2.13e-05

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 41.38  E-value: 2.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974141089     5 VMEGPLFLQSQRFGtKRWRKTWAVLYPasphgvARLEFFDHKGSSSGGGRGssrrldcKVIRLAECVSVAPVTVETPPEP 84
Cdd:smart00233   2 IKEGWLYKKSGGGK-KSWKKRYFVLFN------STLLYYKSKKDKKSYKPK-------GSIDLSGCTVREAPDPDSSKKP 67
                           90       100       110
                   ....*....|....*....|....*....|....
gi 974141089    85 GatAFRLDTAQR-SHLLAADAPSSA-AWVQTLCR 116
Cdd:smart00233  68 H--CFEIKTSDRkTLLLQAESEEEReKWVEALRK 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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