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Conserved domains on  [gi|970598230|ref|NP_001305136|]
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transmembrane protein 239 isoform 1 [Homo sapiens]

Protein Classification

TMEM239 domain-containing protein( domain architecture ID 11239441)

TMEM239 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMEM239 pfam15841
Transmembrane protein 239 family; This family of proteins is found in primates. Proteins in ...
45-193 1.44e-56

Transmembrane protein 239 family; This family of proteins is found in primates. Proteins in this family are typically between 152 and 198 amino acids in length.


:

Pssm-ID: 374162  Cd Length: 155  Bit Score: 175.70  E-value: 1.44e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970598230   45 MQQPRVE--TDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPS----WIQWWSTSNWRQPLQRLLWGLEGILYLLLAL 118
Cdd:pfam15841   1 MQQPRAEvaTDEAGAGEGLQQAVPWRAWSLRHAWEQWWEGHMPNGsrrrWIQWCSSSCWRQPLQRGLWGLEGALYLLLAL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970598230  119 MLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGDTQDL 193
Cdd:pfam15841  81 GLCHALFTTGCHLLRSLWPVVAAVWKHLLPALLLLALSALPALLFAASFLLLFSTLLSLLGLLTGMTHPGDTIDL 155
 
Name Accession Description Interval E-value
TMEM239 pfam15841
Transmembrane protein 239 family; This family of proteins is found in primates. Proteins in ...
45-193 1.44e-56

Transmembrane protein 239 family; This family of proteins is found in primates. Proteins in this family are typically between 152 and 198 amino acids in length.


Pssm-ID: 374162  Cd Length: 155  Bit Score: 175.70  E-value: 1.44e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970598230   45 MQQPRVE--TDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPS----WIQWWSTSNWRQPLQRLLWGLEGILYLLLAL 118
Cdd:pfam15841   1 MQQPRAEvaTDEAGAGEGLQQAVPWRAWSLRHAWEQWWEGHMPNGsrrrWIQWCSSSCWRQPLQRGLWGLEGALYLLLAL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970598230  119 MLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGDTQDL 193
Cdd:pfam15841  81 GLCHALFTTGCHLLRSLWPVVAAVWKHLLPALLLLALSALPALLFAASFLLLFSTLLSLLGLLTGMTHPGDTIDL 155
 
Name Accession Description Interval E-value
TMEM239 pfam15841
Transmembrane protein 239 family; This family of proteins is found in primates. Proteins in ...
45-193 1.44e-56

Transmembrane protein 239 family; This family of proteins is found in primates. Proteins in this family are typically between 152 and 198 amino acids in length.


Pssm-ID: 374162  Cd Length: 155  Bit Score: 175.70  E-value: 1.44e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970598230   45 MQQPRVE--TDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPS----WIQWWSTSNWRQPLQRLLWGLEGILYLLLAL 118
Cdd:pfam15841   1 MQQPRAEvaTDEAGAGEGLQQAVPWRAWSLRHAWEQWWEGHMPNGsrrrWIQWCSSSCWRQPLQRGLWGLEGALYLLLAL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970598230  119 MLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGDTQDL 193
Cdd:pfam15841  81 GLCHALFTTGCHLLRSLWPVVAAVWKHLLPALLLLALSALPALLFAASFLLLFSTLLSLLGLLTGMTHPGDTIDL 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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