NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|955471917|ref|NP_001304271|]
View 

UPF0669 protein C6orf120 isoform 2 precursor [Homo sapiens]

Protein Classification

UPF0669 family protein( domain architecture ID 11246788)

UPF0669 family protein similar to Homo sapiens protein C6orf120, which may be involved in induction of apoptosis in CD4(+) T-cells, but not CD8(+) T-cells or hepatocytes

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UPF0669 pfam17065
Putative cytokine, C6ORF120; C6orf120 is a secreted protein that promotes cell cycle ...
 27-210 2.36e-122

Putative cytokine, C6ORF120; C6orf120 is a secreted protein that promotes cell cycle progression of CD4(+) T-cells, not hepatocytes. In humans it has its main role in tunicamycin-induced CD4(+) T apoptosis that may be associated with endoplasmatic reticulum stress. This suggests that it might be a new cytokine with immununoregulatory function that is selective for CD4+ T cells. It is mainly expressed in hepatocytes and cells in germinal centre of lymph nodes.


:

Pssm-ID: 293670  Cd Length: 185  Bit Score: 344.11  E-value: 2.36e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955471917   27 AAPWTTALLLLLASQVLSPGSCADEEEVPEEWVLLHVVQGQIGAGNYSYLRLNHEGKIVLRMRSLKGDADLYVSASSLHP 106
Cdd:pfam17065   2 AAPWRGALLLSLASQALGLAQCLEEEEVPEEWVLLHVVQGQIGAGNYSYLRLNHEGKIILQMQSLKGDADLYVSDSTLHP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955471917  107 SFDDYELQSATCGPDAVSIPAHFRRPVGIGVYGHPSHLESEFEMKVYYDGTVEQHPFGEAAYPADGADAGQKHAGAPEDA 186
Cdd:pfam17065  82 SFDEYELQSTTCGQDVVSIPAHFRRPVGIGIYGHPSHMESEFEMKVYYDRTVAEYPFGEASYSSDETEASQKQSQTPEDA 161

                         170       180
                  ....*....|....*....|....
gi 955471917  187 SQEEESVLWTILISILKLVLEILF 210
Cdd:pfam17065 162 SQEEESVLWTILIGILKLVLEILF 185
 
Name Accession Description Interval E-value
UPF0669 pfam17065
Putative cytokine, C6ORF120; C6orf120 is a secreted protein that promotes cell cycle ...
 27-210 2.36e-122

Putative cytokine, C6ORF120; C6orf120 is a secreted protein that promotes cell cycle progression of CD4(+) T-cells, not hepatocytes. In humans it has its main role in tunicamycin-induced CD4(+) T apoptosis that may be associated with endoplasmatic reticulum stress. This suggests that it might be a new cytokine with immununoregulatory function that is selective for CD4+ T cells. It is mainly expressed in hepatocytes and cells in germinal centre of lymph nodes.


Pssm-ID: 293670  Cd Length: 185  Bit Score: 344.11  E-value: 2.36e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955471917   27 AAPWTTALLLLLASQVLSPGSCADEEEVPEEWVLLHVVQGQIGAGNYSYLRLNHEGKIVLRMRSLKGDADLYVSASSLHP 106
Cdd:pfam17065   2 AAPWRGALLLSLASQALGLAQCLEEEEVPEEWVLLHVVQGQIGAGNYSYLRLNHEGKIILQMQSLKGDADLYVSDSTLHP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955471917  107 SFDDYELQSATCGPDAVSIPAHFRRPVGIGVYGHPSHLESEFEMKVYYDGTVEQHPFGEAAYPADGADAGQKHAGAPEDA 186
Cdd:pfam17065  82 SFDEYELQSTTCGQDVVSIPAHFRRPVGIGIYGHPSHMESEFEMKVYYDRTVAEYPFGEASYSSDETEASQKQSQTPEDA 161

                         170       180
                  ....*....|....*....|....
gi 955471917  187 SQEEESVLWTILISILKLVLEILF 210
Cdd:pfam17065 162 SQEEESVLWTILIGILKLVLEILF 185
 
Name Accession Description Interval E-value
UPF0669 pfam17065
Putative cytokine, C6ORF120; C6orf120 is a secreted protein that promotes cell cycle ...
 27-210 2.36e-122

Putative cytokine, C6ORF120; C6orf120 is a secreted protein that promotes cell cycle progression of CD4(+) T-cells, not hepatocytes. In humans it has its main role in tunicamycin-induced CD4(+) T apoptosis that may be associated with endoplasmatic reticulum stress. This suggests that it might be a new cytokine with immununoregulatory function that is selective for CD4+ T cells. It is mainly expressed in hepatocytes and cells in germinal centre of lymph nodes.


Pssm-ID: 293670  Cd Length: 185  Bit Score: 344.11  E-value: 2.36e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955471917   27 AAPWTTALLLLLASQVLSPGSCADEEEVPEEWVLLHVVQGQIGAGNYSYLRLNHEGKIVLRMRSLKGDADLYVSASSLHP 106
Cdd:pfam17065   2 AAPWRGALLLSLASQALGLAQCLEEEEVPEEWVLLHVVQGQIGAGNYSYLRLNHEGKIILQMQSLKGDADLYVSDSTLHP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955471917  107 SFDDYELQSATCGPDAVSIPAHFRRPVGIGVYGHPSHLESEFEMKVYYDGTVEQHPFGEAAYPADGADAGQKHAGAPEDA 186
Cdd:pfam17065  82 SFDEYELQSTTCGQDVVSIPAHFRRPVGIGIYGHPSHMESEFEMKVYYDRTVAEYPFGEASYSSDETEASQKQSQTPEDA 161

                         170       180
                  ....*....|....*....|....
gi 955471917  187 SQEEESVLWTILISILKLVLEILF 210
Cdd:pfam17065 162 SQEEESVLWTILIGILKLVLEILF 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH