|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1714-1883 |
1.65e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 127.82 E-value: 1.65e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1714 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1793
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1794 ILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADY 1873
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170
....*....|
gi 2055418298 1874 NQALDLEDYA 1883
Cdd:COG0457 168 EKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1674-1880 |
3.00e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 118.19 E-value: 3.00e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1674 IDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYF 1752
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1753 NAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQY 1832
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2055418298 1833 ELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1880
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
924-1808 |
5.23e-28 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 123.27 E-value: 5.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 924 GAIYRKLGKLQSAMNDLQRVILL--EPLFLNAYWHRhlIYLFQDKINEALDDL-NYIHKYNKNNTEAYLSKAEIYRGKKD 1000
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDELpGKTLLDDEGAAELLALRGLAYLGLGQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1001 ITLAILNYTQAIKSTPTDADI----------YFRRGEMYEITNKVLAIDdfskcifydPKRTDALLKRGLFYCENENWFA 1070
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTAD---------PGNVDALLLKGDLLLSLGNIEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1071 AIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCL-FRKSNPFRALQdySVSALIN 1149
Cdd:TIGR02917 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARE--TLQDALK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1150 DGYENLGCFLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLC 1229
Cdd:TIGR02917 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI-QLRLGRVDEAIATLSPALGLDPDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1230 RAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDkglSELSPMQQALIYSFCENH 1309
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRADLLLILSYLRSG 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1310 --DKAIEVLDgiSWnRAEMTMCA----LLAKVQMKAKRTKEAVEVLKKALdaISHSDkgpDATAISadclyNLGLCYMEE 1383
Cdd:TIGR02917 446 qfDKALAAAK--KL-EKKQPDNAslhnLLGAIYLGKGDLAKAREAFEKAL--SIEPD---FFPAAA-----NLARIDIQE 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1384 GNLQMAFDSFTKAVKANPDFAESFyqRGLCKVKL---HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNC 1460
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAI--LALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1461 NKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETV 1540
Cdd:TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1541 KLntfLNRGLIYVELGQYGFALEDFKQ-------AALISRTNGSLchatamcHHRINEFEEAVNFFTWALKINPcfLDAY 1613
Cdd:TIGR02917 671 AQ---IGLAQLLLAAKRTESAKKIAKSlqkqhpkAALGFELEGDL-------YLRQKDYPAAIQAYRKALKRAP--SSQN 738
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1614 VGRGNSYmeYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNylayegraVVCLq 1693
Cdd:TIGR02917 739 AIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN--------AVVL- 807
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1694 mgNNFAAMQDINAAMKISTTAEfltnrgvihefmghKQNAMKDYQDAI--TLnpkyslayfnaGNIYFHHRQFSQASDYF 1771
Cdd:TIGR02917 808 --NNLAWLYLELKDPRALEYAE--------------RALKLAPNIPAIldTL-----------GWLLVEKGEADRALPLL 860
|
890 900 910
....*....|....*....|....*....|....*..
gi 2055418298 1772 SKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANV 1808
Cdd:TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1640-1883 |
3.73e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 112.02 E-value: 3.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1640 LHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI-STTAEFLT 1718
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELdPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1719 NRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKY 1798
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1799 EEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALD 1878
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
....*
gi 2055418298 1879 LEDYA 1883
Cdd:COG0457 241 YQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1631-1877 |
7.57e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.13 E-value: 7.57e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1631 QAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI 1710
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1711 STT-AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRA 1789
Cdd:COG2956 106 DPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1790 ITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFrAKVRGKIGLIEEA 1869
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAA 264
|
....*...
gi 2055418298 1870 MADYNQAL 1877
Cdd:COG2956 265 LALLERQL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1370-1528 |
1.61e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.48 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYG 1448
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1449 LKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDY 1528
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1397-1569 |
5.68e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.78 E-value: 5.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1397 VKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYL 1475
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1476 YRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVEL 1555
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157
|
170
....*....|....
gi 2055418298 1556 GQYGFALEDFKQAA 1569
Cdd:COG0457 158 GRYEEALELLEKLE 171
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1543-1707 |
1.04e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 1.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1543 NTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYME 1622
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1623 YGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 1702
Cdd:COG0457 89 LGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
....*
gi 2055418298 1703 DINAA 1707
Cdd:COG0457 166 LLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1464-1707 |
3.82e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.47 E-value: 3.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1464 IKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLN 1543
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1544 tflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEY 1623
Cdd:COG0457 81 ---NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1624 G-HDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 1702
Cdd:COG0457 158 GrYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
....*
gi 2055418298 1703 DINAA 1707
Cdd:COG0457 238 LALYQ 242
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1475-1881 |
9.72e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 106.32 E-value: 9.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1475 LYRGVLKYYNK-TYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDAtETVKLNTFLNRglIYV 1553
Cdd:TIGR02917 25 LIEAAKSYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR--AYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1554 ELGQYGFALEDFKQAALISRTNGSLCHAT-AMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQA 1632
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1633 QKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI-- 1710
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKap 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1711 -STTAEFLtnRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRA 1789
Cdd:TIGR02917 259 nSPLAHYL--KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLA 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1790 ITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEA 1869
Cdd:TIGR02917 337 SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416
|
410
....*....|..
gi 2055418298 1870 MADYNQALDLED 1881
Cdd:TIGR02917 417 IADLETAAQLDP 428
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1583-1846 |
2.48e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.16 E-value: 2.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1583 AMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGK 1662
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1663 FQKAWNHFTIAIDTDPKNYLAYEgravvclqmgnnfaamqdinaamkisttaefltNRGVIHEFMGHKQNAMKDYQDAIT 1742
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALY---------------------------------NLGLALLELGRYDEAIEAYERALE 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1743 LNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNR 1822
Cdd:COG0457 139 LDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
250 260
....*....|....*....|....
gi 2055418298 1823 AHFYYCLKQYELAEEDLNKALSLK 1846
Cdd:COG0457 219 LAELLLLALALLLALRLAALALYQ 242
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1205-1872 |
4.17e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 104.40 E-value: 4.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1205 NYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQL--YIRRGqYLLMMKYYDLAKFTIY 1282
Cdd:TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVlpLLARA-YLLQGKFQQVLDELPG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1283 QIAEMDKGLSELSPMQ--QALIYSFCENHDKAIEVLDGISWNRAEMTMCalLAKVQMKAKRTKEAVEVLKKALDAishSD 1360
Cdd:TIGR02917 116 KTLLDDEGAAELLALRglAYLGLGQLELAQKSYEQALAIDPRSLYAKLG--LAQLALAENRFDEARALIDEVLTA---DP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1361 KGPDATAISADCLYNLGlcymeegNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKD---SSILDFNRAITlnPKHY 1437
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLG-------NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFeeaEKHADALLKKA--PNSP 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1438 QA-YLSRVAFYGlKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAfyNRALCYT 1516
Cdd:TIGR02917 262 LAhYLKALVDFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA--RRLLASI 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1517 KIRelqMALTDYGIVLLLDATETVKLNT-FLN-RGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEE 1594
Cdd:TIGR02917 339 QLR---LGRVDEAIATLSPALGLDPDDPaALSlLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1595 AVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALHINPAYIKARisfGYNLQAQGKFQKAWNHFTIAI 1674
Cdd:TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLL---GAIYLGKGDLAKAREAFEKAL 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1675 DTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFN 1753
Cdd:TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1754 AGNIYFHHRQFSQASDYFSKALKFDPEN-EYVLMnRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQY 1832
Cdd:TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSpEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 2055418298 1833 ELAEEDLNKALSLKPNdalvyNFRAkvrgKIGLIEEAMAD 1872
Cdd:TIGR02917 652 AKAITSLKRALELKPD-----NTEA----QIGLAQLLLAA 682
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1654-1886 |
1.66e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.72 E-value: 1.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1654 GYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYegravvcLQMGNNFAAMQDINAAMKI--------STTAEFLTNRGVIHE 1725
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAH-------LALGNLYRRRGEYDRAIRIhqkllerdPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1726 FMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDF 1805
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1806 ANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASV 1885
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
.
gi 2055418298 1886 I 1886
Cdd:COG2956 248 L 248
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1052-1854 |
1.97e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 102.08 E-value: 1.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1052 TDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFR 1131
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1132 KSNPFRALQDYSVSALINDGYENLGCFLHRGIVYAHLKLWLLAICDFETVISLERTitLAYVNIGLIHLLHLDN-YTEAI 1210
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALAENrFDEAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1211 WQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAkftiyqiaemDKG 1290
Cdd:TIGR02917 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA----------EKH 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1291 LSELSpmqqaliySFCENHDKAIEvldgiswnraemtmcaLLAKVQMKAKRTKEAVEVLKKALDaishsdKGPDataiSA 1370
Cdd:TIGR02917 250 ADALL--------KKAPNSPLAHY----------------LKALVDFQKKNYEDARETLQDALK------SAPE----YL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1371 DCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGL 1449
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRvDEAIATLSPALGLDPDDPAALSLLGEAYLA 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1450 KGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTdyg 1529
Cdd:TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALA--- 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1530 IVLLLDATETVKLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCF 1609
Cdd:TIGR02917 453 AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1610 LDAYVGRGNSYMEYGHDEATKQ------------------------AQKDFLKALHI----------NPAYIKArisFGY 1655
Cdd:TIGR02917 533 LRAILALAGLYLRTGNEEEAVAwlekaaelnpqeiepalalaqyylGKGQLKKALAIlneaadaapdSPEAWLM---LGR 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1656 NLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTaEFLTNRGVIHEFMGHKQ--NA 1733
Cdd:TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRteSA 688
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1734 MKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEyVLMNRAITNTILKKYEEAKEDFANVIESCP 1813
Cdd:TIGR02917 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKTHP 767
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 2055418298 1814 FWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYN 1854
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
945-1254 |
4.56e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 4.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 945 LLEPLFLNAYW-HRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYF 1023
Cdd:COG2956 1 LLLPVAAALGWyFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1024 RRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFY 1102
Cdd:COG2956 81 ELAQDYLKAGLLdRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1103 KEATQDFSAAIHLDPNNwlalyyrgclfrksnpfralqdysVSALINdgyenlgcflhRGIVYAHLKLWLLAICDFETVI 1182
Cdd:COG2956 161 DEAIEALEKALKLDPDC------------------------ARALLL-----------LAELYLEQGDYEEAIAALERAL 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1183 SLERTITLAYVNIGLIHlLHLDNYTEAIWQFSEAIRIDPLCIQsYLCRAETYFKLHKLKKAVNELSRAIHLQ 1254
Cdd:COG2956 206 EQDPDYLPALPRLAELY-EKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
979-1142 |
7.13e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 93.92 E-value: 7.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 979 KYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLK 1057
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1058 RGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPF 1136
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGiALEKLGRYE 161
|
....*.
gi 2055418298 1137 RALQDY 1142
Cdd:COG0457 162 EALELL 167
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
885-1143 |
8.19e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.41 E-value: 8.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 885 YVESDLPQEVIKYYESEVKILTEEINdktkypafAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQ 964
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVE--------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 965 DKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSK 1043
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1044 CIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLAL 1123
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
|
250 260
....*....|....*....|
gi 2055418298 1124 YYRGCLFRKSNPFRALQDYS 1143
Cdd:COG2956 250 ALADLLERKEGLEAALALLE 269
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1330-1513 |
8.57e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 93.06 E-value: 8.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1330 ALLAKVQMKAKRTKEAVEVLKKALDAISHSDKGPDATAISADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 1409
Cdd:COG4785 33 AVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1410 RGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSR-VAFYGLkGRYSKAILNCNKAIKIYPESVRAYLYRGvLKYYNKTY 1487
Cdd:COG4785 113 RGLAYLLLgDYDAALEDFDRALELDPDYAYAYLNRgIALYYL-GRYELAIADLEKALELDPNDPERALWLY-LAERKLDP 190
|
170 180 190
....*....|....*....|....*....|..
gi 2055418298 1488 KLAITDLTTAISM------DKNSYTAFYNRAL 1513
Cdd:COG4785 191 EKALALLLEDWATayllqgDTEEARELFKLAL 222
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
917-1105 |
6.98e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 91.22 E-value: 6.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170 180 190
....*....|....*....|....*....|
gi 2055418298 1076 TALLNIDHQNSQARTYRGIAYVKWKFYKEA 1105
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVLL 197
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1079-1286 |
9.02e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.84 E-value: 9.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1079 LNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPFRALQDYSVSALINDGYENlgC 1157
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGlAYLRLGRYEEALADYEQALELDPDDAE--A 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1158 FLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKL 1237
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL-ELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2055418298 1238 HKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAE 1286
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1639-1886 |
1.15e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.83 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1639 ALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQD-INAAMKISTTAEFL 1717
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEaAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1718 TNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKK 1797
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1798 YEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQAL 1877
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLA 241
|
....*....
gi 2055418298 1878 DLEDYASVI 1886
Cdd:COG3914 242 ALARGPSEL 250
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1714-1849 |
2.28e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.40 E-value: 2.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1714 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1793
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2055418298 1794 ILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND 1849
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1643-1842 |
2.38e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 88.82 E-value: 2.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1643 NPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGV 1722
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1723 IHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAK 1802
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2055418298 1803 EDFANVIESCPFWAAVYFNRaHFYYCLKQYELAEEDLNKA 1842
Cdd:COG4785 162 ADLEKALELDPNDPERALWL-YLAERKLDPEKALALLLED 200
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1331-1606 |
1.53e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.86 E-value: 1.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1331 LLAKVQMKAKRTKEAVEVLKKALDAISHSdkgpdataisADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQR 1410
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPET----------VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1411 GLC--KVKLHkDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYK 1488
Cdd:COG2956 83 AQDylKAGLL-DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1489 LAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATetvKLNTFLNRGLIYVELGQYGFALEDFKQA 1568
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD---YLPALPRLAELYEKLGDPEEALELLRKA 238
|
250 260 270
....*....|....*....|....*....|....*...
gi 2055418298 1569 ALISRTNgSLCHATAMCHHRINEFEEAVNFFTWALKIN 1606
Cdd:COG2956 239 LELDPSD-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1058-1316 |
1.68e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.86 E-value: 1.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1058 RGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPF- 1136
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLd 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1137 RALQDYSvsALINDGYENLGCFLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIHLlHLDNYTEAIWQFSEA 1216
Cdd:COG2956 94 RAEELLE--KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL-EQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1217 IRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELsp 1296
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-- 248
|
250 260
....*....|....*....|
gi 2055418298 1297 MQQALIYSFCENHDKAIEVL 1316
Cdd:COG2956 249 LALADLLERKEGLEAALALL 268
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
999-1142 |
2.11e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.12 E-value: 2.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 999 KDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTA 1077
Cdd:COG4785 53 LAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYdLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR 132
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 1078 LLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPFRALQDY 1142
Cdd:COG4785 133 ALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALL 197
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1399-1519 |
2.84e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.74 E-value: 2.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1399 ANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 1477
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDyDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2055418298 1478 GVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIR 1519
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1567-1855 |
4.39e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.44 E-value: 4.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1567 QAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEAtkQAQKDFLKALHINPAY 1646
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGE--AAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1647 IKARIsfgynLQAQGKFQKAWNHFTIAIDTDPKNYLAYegravvclqmgnnfaamqdinaamkisttaeflTNRGVIHEF 1726
Cdd:COG3914 83 LAALL-----LQALGRYEEALALYRRALALNPDNAEAL---------------------------------FNLGNLLLA 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1727 MGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFA 1806
Cdd:COG3914 125 LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYR 204
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2055418298 1807 NVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNF 1855
Cdd:COG3914 205 RALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
946-1126 |
6.75e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.06 E-value: 6.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 946 LEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRR 1025
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1026 GEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKE 1104
Cdd:COG0457 83 GLALQALGRYeEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170 180
....*....|....*....|..
gi 2055418298 1105 ATQDFSAAIHLDPNNWLALYYR 1126
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALG 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1300-1513 |
6.95e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.06 E-value: 6.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1300 ALIYSFCENHDKAIEVLD-GISWNRAEMTMCALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGL 1378
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEkALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPD----DAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1379 CYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAI 1457
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELgRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2055418298 1458 LNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRAL 1513
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1374-1643 |
1.75e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 1.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1374 YNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGR 1452
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1453 YSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVL 1532
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1533 LLDATetvKLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCfLDA 1612
Cdd:COG2956 172 KLDPD---CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247
|
250 260 270
....*....|....*....|....*....|.
gi 2055418298 1613 YVGRGNSYMEYGHDEAtkqAQKDFLKALHIN 1643
Cdd:COG2956 248 LLALADLLERKEGLEA---ALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1012-1253 |
5.32e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.75 E-value: 5.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1012 IKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQART 1090
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1091 YRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPF-RALQDYSVSALINDGYENLgcFLHRGIVYAHLK 1169
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADA--LYNLGIALEKLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1170 LWLLAICDFETVISLERtitLAYVNIGLIHLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSR 1249
Cdd:COG0457 159 RYEEALELLEKLEAAAL---AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
|
....
gi 2055418298 1250 AIHL 1253
Cdd:COG0457 236 AALA 239
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
899-1578 |
7.54e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 87.06 E-value: 7.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 899 ESEVKILTEEIndKTKYPAF--AYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNY 976
Cdd:TIGR02917 175 FDEARALIDEV--LTADPGNvdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 977 IHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRG-EMYEITNKVLAIDDFSKCIFYDPKRTDAL 1055
Cdd:TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGaSEYQLGNLEQAYQYLNQILKYAPNSHQAR 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1056 LKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLF----R 1131
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsqgD 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1132 KSNPFRALQDYS-----------------------------VSALINDGYENLGCFLHRGIVYAHLKLWLLAICDFETVI 1182
Cdd:TIGR02917 413 PSEAIADLETAAqldpelgradlllilsylrsgqfdkalaaAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1183 SLERTITLAYVNIGLIHlLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYI 1262
Cdd:TIGR02917 493 SIEPDFFPAAANLARID-IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1263 RRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSPMqQALIYSFCENHDKAIEVL-DGISWNRAEMTMCALLAKVQMKAKR 1341
Cdd:TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFkKLLALQPDSALALLLLADAYAVMKN 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1342 TKEAVEVLKKALDAISHSDKGpdataisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGlckvKLHKDS 1421
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEA----------QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG----DLYLRQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1422 SilDFNRAITLNPKHYQ--------AYLSRVafYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITD 1493
Cdd:TIGR02917 717 K--DYPAAIQAYRKALKrapssqnaIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1494 LTTAISMDKNSYTAFYNRALCYTKI---RELQMALTdygiVLLLDATETVKLNTFlnrGLIYVELGQYGFALEDFKQAAL 1570
Cdd:TIGR02917 793 YQTVVKKAPDNAVVLNNLAWLYLELkdpRALEYAER----ALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVN 865
|
....*...
gi 2055418298 1571 ISRTNGSL 1578
Cdd:TIGR02917 866 IAPEAAAI 873
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
917-1116 |
4.24e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG2956 76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2055418298 1076 TALLNIDHQNSQARTYRGIaYVKWKFYKEATQDFSAAIHLD 1116
Cdd:COG2956 236 RKALELDPSDDLLLALADL-LERKEGLEAALALLERQLRRH 275
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1727-1879 |
8.15e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 78.42 E-value: 8.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1727 MGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALK--------FDPENEYVLMNRAITNTILKKY 1798
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAaeridralALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1799 EEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALD 1878
Cdd:COG4785 90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
|
.
gi 2055418298 1879 L 1879
Cdd:COG4785 170 L 170
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1121-1266 |
1.20e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 78.03 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1121 LALYYRGCLFRKSNPFRALQDYSVSALINDGYENLgcFLHRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIHL 1200
Cdd:COG4785 41 LADLALALAAAALAAAALAAERIDRALALPDLAQL--YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYL 118
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1201 LhLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPD----GIQLYIRRGQ 1266
Cdd:COG4785 119 L-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperALWLYLAERK 187
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1750-1880 |
2.00e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1750 AYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCL 1829
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2055418298 1830 KQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1880
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
917-1089 |
5.08e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.97 E-value: 5.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKVL-AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
170
....*....|....
gi 2055418298 1076 TALLNIDHQNSQAR 1089
Cdd:COG0457 202 ALEQALRKKLAILT 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1720-1879 |
7.61e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.08 E-value: 7.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1720 RGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYE 1799
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1800 EAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDL 1879
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1649-1781 |
8.14e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 73.30 E-value: 8.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1649 ARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFM 1727
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2055418298 1728 GHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPEN 1781
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1091-1400 |
8.92e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.69 E-value: 8.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1091 YRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKsnpfralqdysvsalindgyenlgcflhrgivyahLKL 1170
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-----------------------------------RGE 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1171 WLLAICDFETVISLERTITLAYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRA 1250
Cdd:COG2956 58 YDRAIRIHQKLLERDPDRAEALLELAQDYL-KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1251 IHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSpMQQALIYSFCENHDKAIEVL-DGISWNRAEMTMC 1329
Cdd:COG2956 137 LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL-LLLAELYLEQGDYEEAIAALeRALEQDPDYLPAL 215
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2055418298 1330 ALLAKVQMKAKRTKEAVEVLKKALdaishsdkgpdATAISADCLYNLGLCYMEEGNLQMAFDSFTKAVKAN 1400
Cdd:COG2956 216 PRLAELYEKLGDPEEALELLRKAL-----------ELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1446-1741 |
9.26e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.69 E-value: 9.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1446 FYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYnralcytkirELqmal 1525
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL----------EL---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1526 tdygivllldatetvklntflnrGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKI 1605
Cdd:COG2956 83 -----------------------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1606 NPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYE 1685
Cdd:COG2956 140 GPENAHAYCELAELYLEQGD---YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2055418298 1686 GRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAI 1741
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1259-1477 |
1.19e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 79.65 E-value: 1.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1259 QLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSPMQQALIYSFCE--NHDKAIEVLDGISWNRAEMTMCALLAKVQ 1336
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAalLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1337 MKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVK 1416
Cdd:COG3914 89 QALGRYEEALALYRRALAL------NPD----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1417 LHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 1477
Cdd:COG3914 159 LGRlEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1475-1675 |
1.63e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 1.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1475 LYRGVLKYYNKTYKLAITDLTTAISM-----DKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLNTFLNRG 1549
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLaallfAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1550 LIYVELGQYGFALEDFKQAAlisrtngSLCHATA-------MCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYME 1622
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQAL-------ELDPDLAeaynnrgLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2055418298 1623 YGHDEAtkqAQKDFLKALHINP----------------AYIKARISF----GYNLQAQGKFQKAWNHFTIAID 1675
Cdd:COG4785 154 LGRYEL---AIADLEKALELDPndperalwlylaerklDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1333-1879 |
3.61e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 78.20 E-value: 3.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1333 AKVQMKAKRTKEAVEVLKKALDAishSDKGPDATaisadclYNLGLCYMEEGNLQMAFDSFTKAV-------KANPDFAE 1405
Cdd:TIGR02917 29 AKSYLQKNKYKAAIIQLKNALQK---DPNDAEAR-------FLLGKIYLALGDYAAAEKELRKALslgypknQVLPLLAR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1406 SfyqrglcKVKLHKDSSILDFNRAITLNPKHYQAYL--SRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYY 1483
Cdd:TIGR02917 99 A-------YLLQGKFQQVLDELPGKTLLDDEGAAELlaLRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1484 NKTYKLAITDLTTAISMDKNSYTAFYNRA--LCYTKIRELqmALTDYGIVLLLDATETvklNTFLNRGLIYVELGQYGFA 1561
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGdlLLSLGNIEL--ALAAYRKAIALRPNNI---AVLLALATILIEAGEFEEA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1562 LEDFKqaALISRTNGSL--CHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKA 1639
Cdd:TIGR02917 247 EKHAD--ALLKKAPNSPlaHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE---QAYQYLNQI 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1640 LHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYE--GRAVVCLQMGNNFAAMQDINAAMKiSTTAEFL 1717
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSllGEAYLALGDFEKAAEYLAKATELD-PENAAAR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1718 TNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKK 1797
Cdd:TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1798 YEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND-------ALVYNFRAKVRGKIGLIEEAM 1870
Cdd:TIGR02917 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNlrailalAGLYLRTGNEEEAVAWLEKAA 560
|
....*....
gi 2055418298 1871 ADYNQALDL 1879
Cdd:TIGR02917 561 ELNPQEIEP 569
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1733-1857 |
6.88e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.42 E-value: 6.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1733 AMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESC 1812
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2055418298 1813 PFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRA 1857
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
917-1050 |
1.21e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.84 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMY-EITNKVLAIDDFSKCIFYDPK 1050
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYrALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1380-1547 |
2.01e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 2.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1380 YMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAIL 1458
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRlEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1459 NCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATE 1538
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
|
....*....
gi 2055418298 1539 TVKLNTFLN 1547
Cdd:COG3914 248 SELSPFALL 256
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1482-1880 |
7.31e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 73.48 E-value: 7.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1482 YYNKTYKLAITDLTTAISMDKNSytAFY-NRALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGF 1560
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDP--VYYsNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYAD 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1561 ALEDFKQAALISRTNGSlcHATAMCHHRINEFeeAVNFFTWALKINP------CFLDAYVGRGNSYMEYGHDEATKQAQK 1634
Cdd:TIGR00990 213 ALLDLTASCIIDGFRNE--QSAQAVERLLKKF--AESKAKEILETKPenlpsvTFVGNYLQSFRPKPRPAGLEDSNELDE 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1635 DFLKALhiNPAYIKARISfgynlQAQGKFQKAWNHFTIAID-TDPKNYLAYEgravvclqmgnnfaamqdinaamkistt 1713
Cdd:TIGR00990 289 ETGNGQ--LQLGLKSPES-----KADESYEEAARAFEKALDlGKLGEKEAIA---------------------------- 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1714 aefLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1793
Cdd:TIGR00990 334 ---LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1794 ILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADY 1873
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490
|
....*..
gi 2055418298 1874 NQALDLE 1880
Cdd:TIGR00990 491 DTAIELE 497
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1046-1143 |
8.28e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 69.94 E-value: 8.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1046 FYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYY 1125
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
|
90
....*....|....*....
gi 2055418298 1126 RG-CLFRKSNPFRALQDYS 1143
Cdd:COG4785 147 RGiALYYLGRYELAIADLE 165
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1581-1711 |
1.33e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.75 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1581 ATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQ 1660
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLD---EAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2055418298 1661 GKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS 1711
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1795-1883 |
2.47e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.52 E-value: 2.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1795 LKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYN 1874
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
....*....
gi 2055418298 1875 QALDLEDYA 1883
Cdd:COG5010 147 RALGTSPLK 155
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1332-1470 |
3.00e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.98 E-value: 3.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1332 LAKVQMKAKRTKEAVEVLKKALDAishSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRG 1411
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL---DPDNPEA-------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1412 LCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPES 1470
Cdd:COG4783 80 LALLKAGDyDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1548-1684 |
3.44e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.56 E-value: 3.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1548 RGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG-HD 1626
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGrLE 163
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2055418298 1627 EATKQAQkdflKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAY 1684
Cdd:COG3914 164 EAIAALR----RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
933-1160 |
6.09e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.79 E-value: 6.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 933 LQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNY---------IHKYNKNNTEAYLSKAEIYRGKKDITL 1003
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLalaageaaaAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1004 AILNYTQAIKSTPTDADIYFRRGEMYEITNKVL-AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNID 1082
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEeALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1083 HQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPN------NWLALYYRGCLFRKSNPFRAlqdysVSALINDGYENLG 1156
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahsNLLFALRQACDWEVYDRFEE-----LLAALARGPSELS 251
|
....
gi 2055418298 1157 CFLH 1160
Cdd:COG3914 252 PFAL 255
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
903-1096 |
8.58e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.41 E-value: 8.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 903 KILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNK 982
Cdd:COG3914 64 AGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 983 NNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRgLF 1061
Cdd:COG3914 144 DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRALELDPDNADAHSNL-LF 222
|
170 180 190
....*....|....*....|....*....|....*
gi 2055418298 1062 YCENENWFAAIEDFTALLNIDHQNSQARTYRGIAY 1096
Cdd:COG3914 223 ALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1102-1333 |
9.75e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.02 E-value: 9.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1102 YKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPFRALQDYSVSALINDGYENLGCFLHRGIVYAHLKLWLLAICDFET 1180
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGlALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1181 VI-SLERTITL------AYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHL 1253
Cdd:COG3914 97 ALaLYRRALALnpdnaeALFNLGNL-LLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1254 QPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMDKGLSELSPMQQALIYSFC--ENHDKAIEVLDGISWNRAEMTMCAL 1331
Cdd:COG3914 176 DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACdwEVYDRFEELLAALARGPSELSPFAL 255
|
..
gi 2055418298 1332 LA 1333
Cdd:COG3914 256 LY 257
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1404-1538 |
1.13e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.06 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1404 AESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKY 1482
Cdd:COG4783 4 AEALYALAQALLLAGDyDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2055418298 1483 YNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATE 1538
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1395-1604 |
1.25e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.48 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1395 KAVKANPDFAESFYQRGLCKVKLHKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAY 1474
Cdd:COG4785 31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1475 LYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDateTVKLNTFLNRGLIYVE 1554
Cdd:COG4785 111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELD---PNDPERALWLYLAERK 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1555 LGQYGfALEDFKQaalisrtngslchATAMCHHRINEFEEAVNFFTWALK 1604
Cdd:COG4785 188 LDPEK-ALALLLE-------------DWATAYLLQGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1379-1472 |
2.64e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.72 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1379 CYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAIL 1458
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 2055418298 1459 NCNKAIKIYPESVR 1472
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1723-1813 |
2.77e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.72 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1723 IHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDyFSKALKFDPENEYVLMNRAITNTILKKYEEAK 1802
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2055418298 1803 EDFANVIESCP 1813
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1541-1680 |
3.84e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 3.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1541 KLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSY 1620
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1621 MEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN 1680
Cdd:COG4783 83 LKAGD---YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1737-1847 |
1.07e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1737 YQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWA 1816
Cdd:COG5010 43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122
|
90 100 110
....*....|....*....|....*....|.
gi 2055418298 1817 AVYFNRAHFYYCLKQYELAEEDLNKALSLKP 1847
Cdd:COG5010 123 NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1344-1481 |
1.26e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1344 EAVEVLKKALDAIshsdkgPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSS 1422
Cdd:COG4235 1 EAIARLRQALAAN------PN----DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDtEEA 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2055418298 1423 ILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLK 1481
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1722-1813 |
1.47e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1722 VIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEA 1801
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
90
....*....|..
gi 2055418298 1802 KEDFANVIESCP 1813
Cdd:COG5010 142 KAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
917-1060 |
1.53e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.01 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDlnyihkynknnteaylskaeiyr 996
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED----------------------- 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 997 gkkditlailnYTQAIKSTPTDADIYFRRGEMYEITNK-VLAIDDFSKCIFYDPKRTDALLKRGL 1060
Cdd:COG4785 130 -----------FDRALELDPDYAYAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWLYL 183
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1004-1119 |
1.75e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1004 AILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNID 1082
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 2055418298 1083 HQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNN 1119
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1631-1790 |
1.80e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1631 QAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNylayegravvclqmgnnfaamqdinaamki 1710
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------------------------------ 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1711 sttAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPEN-EYVLMNRA 1789
Cdd:COG4235 51 ---ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADaPARLLEAS 127
|
.
gi 2055418298 1790 I 1790
Cdd:COG4235 128 I 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1714-1813 |
3.19e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 3.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1714 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNT 1793
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|
gi 2055418298 1794 ILKKYEEAKEDFANVIESCP 1813
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1561-1680 |
3.22e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 3.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1561 ALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKAL 1640
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERAL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2055418298 1641 HINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN 1680
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1520-1666 |
5.21e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.63 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1520 ELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFF 1599
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALF---NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2055418298 1600 TWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKA 1666
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLE---EAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
986-1119 |
5.21e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 986 EAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCE 1064
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 1065 NENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNN 1119
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1795-1883 |
6.08e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 6.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1795 LKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEdLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYN 1874
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*....
gi 2055418298 1875 QALDLEDYA 1883
Cdd:COG3063 84 RALELDPSA 92
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1611-1781 |
9.06e-10 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 60.81 E-value: 9.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1611 DAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYegravv 1690
Cdd:TIGR02521 32 KIRVQLALGYLEQGD---LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1691 clqmgNNFAAmqdinaamkisttaeFLTNRGVIHEFMGHKQNAMKDyqdaitlnPKY---SLAYFNAGNIYFHHRQFSQA 1767
Cdd:TIGR02521 103 -----NNYGT---------------FLCQQGKYEQAMQQFEQAIED--------PLYpqpARSLENAGLCALKAGDFDKA 154
|
170
....*....|....
gi 2055418298 1768 SDYFSKALKFDPEN 1781
Cdd:TIGR02521 155 EKYLTRALQIDPQR 168
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
917-1124 |
1.16e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG3914 44 ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 997 GKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLeEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1076 TALLNIDHQNSQARTYRGIAYVK---WKFYkEATQDFSAAIHLDPNNWLALY 1124
Cdd:COG3914 204 RRALELDPDNADAHSNLLFALRQacdWEVY-DRFEELLAALARGPSELSPFA 254
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
969-1092 |
1.52e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 969 EALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKV-LAIDDFSKCIFY 1047
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2055418298 1048 DPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYR 1092
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1161-1288 |
2.47e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 2.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1161 RGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKL 1240
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2055418298 1241 KKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEMD 1288
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1748-1886 |
2.56e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1748 SLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYY 1827
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2055418298 1828 CLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASVI 1886
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1451-1606 |
6.07e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.16 E-value: 6.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1451 GRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGI 1530
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2055418298 1531 VLLLDATEtvkLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKIN 1606
Cdd:COG3914 172 ALELDPDN---AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1389-1501 |
7.54e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.78 E-value: 7.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1389 AFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIY 1467
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRyDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....
gi 2055418298 1468 PESVRAYLYRGVLKYYNKTYKLAITDLTTAISMD 1501
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1606-1776 |
7.65e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.00 E-value: 7.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1606 NPCFLDAYVGRGNSYMEYGHDEAtkqAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYE 1685
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDL---AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1686 GRAVVCLQMGNNFAAMQDINAAMKISTTAEFLtnrgVIHEFMGHKQnamKDYQDAI-TLNPKYSLAYFNAGNiyfhhrqF 1764
Cdd:COG4785 146 NRGIALYYLGRYELAIADLEKALELDPNDPER----ALWLYLAERK---LDPEKALaLLLEDWATAYLLQGD-------T 211
|
170
....*....|..
gi 2055418298 1765 SQASDYFSKALK 1776
Cdd:COG4785 212 EEARELFKLALA 223
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1205-1482 |
8.71e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 60.38 E-value: 8.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1205 NYTEAIWQFSEAI--RIDPLciqSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQ-YLLMMKYYD-LAKFT 1280
Cdd:TIGR00990 142 DFNKAIKLYSKAIecKPDPV---YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANaYDGLGKYADaLLDLT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1281 IYQIAEmDKGLSELSPMQQALIYSFCENhdKAIEVLDGISWN--------------RAEMTMCAL-------------LA 1333
Cdd:TIGR00990 219 ASCIID-GFRNEQSAQAVERLLKKFAES--KAKEILETKPENlpsvtfvgnylqsfRPKPRPAGLedsneldeetgngQL 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1334 KVQMKAKRTK------EAVEVLKKALDAishSDKGPdATAISadclYNL-GLCYMEEGNLQMAFDSFTKAVKANPDFAES 1406
Cdd:TIGR00990 296 QLGLKSPESKadesyeEAARAFEKALDL---GKLGE-KEAIA----LNLrGTFKCLKGKHLEALADLSKSIELDPRVTQS 367
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2055418298 1407 FYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKY 1482
Cdd:TIGR00990 368 YIKRASMNLELgDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
917-1018 |
1.02e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG4783 38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
|
90 100
....*....|....*....|..
gi 2055418298 997 GKKDITLAILNYTQAIKSTPTD 1018
Cdd:COG4783 118 ALGRPDEAIAALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1016-1253 |
1.13e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 60.00 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1016 PTDADIYFRRGEMYEITNKVL-AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGI 1094
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLeALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1095 AYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKSNPFRalqdySVSALINDGYENlgcFLHRGIVYAHLKLWLL- 1173
Cdd:TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-----SSMATFRRCKKN---FPEAPDVYNYYGELLLd 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1174 ------AICDFETVISLERTITLAYVNI------GLIHLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLK 1241
Cdd:TIGR00990 480 qnkfdeAIEKFDTAIELEKETKPMYMNVlplinkALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559
|
250
....*....|..
gi 2055418298 1242 KAVNELSRAIHL 1253
Cdd:TIGR00990 560 EALKLFERAAEL 571
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1585-1681 |
1.49e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1585 CHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG-HDEAtkqaqKDFLKALHINPAYIKARISFGYNLQAQGKF 1663
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGrYDEA-----IALEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*...
gi 2055418298 1664 QKAWNHFTIAIDTDPKNY 1681
Cdd:COG3063 76 DEALAYLERALELDPSAL 93
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1554-1877 |
1.72e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 59.61 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1554 ELGQYGFALEDFKQA------ALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYmeyghDE 1627
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAiklyskAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY-----DG 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1628 ATKQAQKDF-LKALHINPAYIKARISFG----YNLQAQGKFQKAwnhftiaIDTDPKNY--LAYEGRAVVCLQMGNNFAA 1700
Cdd:TIGR00990 207 LGKYADALLdLTASCIIDGFRNEQSAQAverlLKKFAESKAKEI-------LETKPENLpsVTFVGNYLQSFRPKPRPAG 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1701 MQDINAAMKisTTAEFLTNRGVIHefMGHK-----QNAMKDYQDAITLN---PKYSLAYFNAGNIYFHHRQFSQASDYFS 1772
Cdd:TIGR00990 280 LEDSNELDE--ETGNGQLQLGLKS--PESKadesyEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLS 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1773 KALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALV 1852
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
330 340
....*....|....*....|....*
gi 2055418298 1853 YNFRAKVRGKIGLIEEAMADYNQAL 1877
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCK 460
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1628-1779 |
1.77e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1628 ATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAA 1707
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2055418298 1708 MKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDP 1779
Cdd:COG5010 81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1018-1142 |
2.64e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1018 DADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAY 1096
Cdd:COG4783 3 CAEALYALAQALLLAGDYdEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2055418298 1097 VKWKFYKEATQDFSAAIHLDPNNWLALYYRGCLFRKS-NPFRALQDY 1142
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALgRPDEAIAAL 129
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1037-1142 |
3.00e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1037 AIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLD 1116
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100
....*....|....*....|....*..
gi 2055418298 1117 PNNWLALYYRG-CLFRKSNPFRALQDY 1142
Cdd:COG4235 82 PDNPEALYLLGlAAFQQGDYAEAIAAW 108
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1623-1714 |
3.16e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 3.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1623 YGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNhFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 1702
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 2055418298 1703 DINAAMKISTTA 1714
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1191-1354 |
3.87e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.08 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1191 AYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLM 1270
Cdd:COG4785 75 LYYERGVAYD-SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1271 MKYYDLAkftiyqIAEMDKGLSELSPMQQALIYSFC----ENHDKAIEVLDGIsWnraemtmcallAKVQMKAKRTKEAV 1346
Cdd:COG4785 154 LGRYELA------IADLEKALELDPNDPERALWLYLaerkLDPEKALALLLED-W-----------ATAYLLQGDTEEAR 215
|
....*...
gi 2055418298 1347 EVLKKALD 1354
Cdd:COG4785 216 ELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1690-1780 |
6.13e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 6.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1690 VCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKdYQDAITLNPKYSLAYFNAGNIYFHHRQFSQAS 1768
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2055418298 1769 DYFSKALKFDPE 1780
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1084-1256 |
9.61e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 9.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1084 QNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRGclfrksnpfralqdysvsalindgyenlgcflhrgI 1163
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-----------------------------------E 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1164 VYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKA 1243
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA-LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
170
....*....|...
gi 2055418298 1244 VNELSRAIHLQPD 1256
Cdd:COG4783 126 IAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1423-1532 |
1.04e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1423 ILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDK 1502
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110
....*....|....*....|....*....|
gi 2055418298 1503 NSYTAFYNRALCYTKIRELQMALTDYGIVL 1532
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1427-1535 |
1.13e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1427 NRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYT 1506
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90 100
....*....|....*....|....*....
gi 2055418298 1507 AFYNRALCYTKIRELQMALTDYGIVLLLD 1535
Cdd:COG5010 124 AYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1425-1505 |
1.20e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1425 DFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAIlNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNS 1504
Cdd:COG3063 14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92
|
.
gi 2055418298 1505 Y 1505
Cdd:COG3063 93 L 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1021-1120 |
1.55e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1021 IYFRRGEMYEitnkvlAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEdFTALLNIDHQNSQARTYRGIAYVKWK 1100
Cdd:COG3063 1 LYLKLGDLEE------AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73
|
90 100
....*....|....*....|
gi 2055418298 1101 FYKEATQDFSAAIHLDPNNW 1120
Cdd:COG3063 74 DYDEALAYLERALELDPSAL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1602-1711 |
1.60e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1602 ALKINPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY 1681
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGR---YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|
gi 2055418298 1682 LAYEGRAVVCLQMGNNFAAMQDINAAMKIS 1711
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1602-1745 |
1.60e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1602 ALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY 1681
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 1682 LAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNP 1745
Cdd:COG5010 89 ELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1223-1403 |
2.94e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1223 CIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAkftiyqIAEMDKGLsELSPMQQALI 1302
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEA------IVLLHEAL-ELDPDEPEAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1303 YSfcenhdkaievldgiswnraemtmcalLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYME 1382
Cdd:COG4783 76 LN---------------------------LGLALLKAGDYDEALALLEKALKL------DPE----HPEAYLRLARAYRA 118
|
170 180
....*....|....*....|.
gi 2055418298 1383 EGNLQMAFDSFTKAVKANPDF 1403
Cdd:COG4783 119 LGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
917-1028 |
4.28e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLflNAYWHRHL--IYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEI 994
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD--NADALLDLaeALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100 110
....*....|....*....|....*....|....
gi 2055418298 995 YRGKKDITLAILNYTQAIKSTPTDADIYFRRGEM 1028
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1551-1645 |
5.45e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 5.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1551 IYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNfFTWALKINPCFLDAYVGRGNSYMEYGHdeaTK 1630
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD---YD 76
|
90
....*....|....*
gi 2055418298 1631 QAQKDFLKALHINPA 1645
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1728-1813 |
5.75e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.99 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1728 GHKQNAMKDYQDAITLNPKYSL---AYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYV---LMNRAITNTILKKYEEA 1801
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKA 86
|
90
....*....|..
gi 2055418298 1802 KEDFANVIESCP 1813
Cdd:COG1729 87 RATLEELIKKYP 98
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
917-1025 |
6.28e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYR 996
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
|
90 100 110
....*....|....*....|....*....|....*
gi 2055418298 997 gKKDITLAILNYTQAIKST------PTDADIYFRR 1025
Cdd:COG4785 187 -KLDPEKALALLLEDWATAyllqgdTEEARELFKL 220
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1164-1256 |
6.75e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 6.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1164 VYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIwQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKA 1243
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLL-LLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 2055418298 1244 VNELSRAIHLQPD 1256
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1200-1289 |
1.23e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1200 LLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKF 1279
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 2055418298 1280 TIYQIAEMDK 1289
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1447-1536 |
1.40e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1447 YGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAItDLTTAISMDKNSYTAFYNRALCYTKIRELQMALT 1526
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 2055418298 1527 DYGIVLLLDA 1536
Cdd:COG3063 81 YLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
926-1016 |
1.83e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 926 IYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALdDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAI 1005
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2055418298 1006 LNYTQAIKSTP 1016
Cdd:COG3063 80 AYLERALELDP 90
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1375-1525 |
3.41e-06 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 50.41 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1375 NLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSSILD-FNRAITLNPKHYQAYLSRVAFYGLKGRY 1453
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDsFRRALTLNPNNGDVLNNYGTFLCQQGKY 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2055418298 1454 SKAILNCNKAIK--IYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMAL 1525
Cdd:TIGR02521 116 EQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
868-1117 |
3.65e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.91 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 868 EDPPERVKEPPKLKLNDYVESdLPQEVIKYYESEVKILTEEI--NDKTKYPAFAYCRRGAIYRKLGKLQSAMNDLQRVIL 945
Cdd:TIGR00990 281 EDSNELDEETGNGQLQLGLKS-PESKADESYEEAARAFEKALdlGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 946 LEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKstpTDADIYFRR 1025
Cdd:TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSH 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1026 GEMYEITNKVLAIDD----FSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTalLNIDHQNSQARTYRGI------- 1094
Cdd:TIGR00990 437 IQLGVTQYKEGSIASsmatFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD--TAIELEKETKPMYMNVlplinka 514
|
250 260
....*....|....*....|....*
gi 2055418298 1095 -AYVKWKF-YKEATQDFSAAIHLDP 1117
Cdd:TIGR00990 515 lALFQWKQdFIEAENLCEKALIIDP 539
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1021-1117 |
3.72e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.80 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1021 IYFRRGEMYEitnkvlAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWK 1100
Cdd:COG5010 63 LYNKLGDFEE------SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 2055418298 1101 FYKEATQDFSAAIHLDP 1117
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1330-1441 |
3.75e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 3.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1330 ALLAKVQMKAKRTKEAVEVLKKALDAishsdKGPDATAisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 1409
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRL-----DPDNADA-----LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90
|
90 100 110
....*....|....*....|....*....|...
gi 2055418298 1410 RGLCKVKLHK-DSSILDFNRAITLNPKHYQAYL 1441
Cdd:COG4235 91 LGLAAFQQGDyAEAIAAWQKLLALLPADAPARL 123
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1714-1849 |
5.89e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 50.27 E-value: 5.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1714 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYfNAGNIYFHHRQ-FSQASDYFSKALKFDPENEYVLMNRAITn 1792
Cdd:PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAY-NYLGIYLTQAGnFDAAYEAFDSVLELDPTYNYAYLNRGIA- 141
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2055418298 1793 tilkkyeeakedfanviescpfwaavyfnrahFYYcLKQYELAEEDLNKALSLKPND 1849
Cdd:PRK11189 142 --------------------------------LYY-GGRYELAQDDLLAFYQDDPND 165
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
889-1016 |
6.53e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 889 DLPQEVIKYYESEVKILTEEINDKTKYPAFAYCRRGAIYRKLGKLQSAMNDLQRVILLEPLFLNAYWHRHLIYLFQDKIN 968
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKD 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2055418298 969 EALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTP 1016
Cdd:COG5010 106 EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1590-1803 |
6.58e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.14 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1590 NEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPA-----YIKARISFgynlqAQGKFQ 1664
Cdd:TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD---KAEEDFDKALKLNSEdpdiyYHRAQLHF-----IKGEFA 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1665 KAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMK--------ISTTAEFLTNRgviHEFmghkQNAMKD 1736
Cdd:TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKnfpeapdvYNYYGELLLDQ---NKF----DEAIEK 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1737 YQDAITLNPKYS------LAYFNAGNIYFHHRQ-FSQASDYFSKALKFDPENEY-------VLMNRAITNTILKKYEEAK 1802
Cdd:TIGR00990 490 FDTAIELEKETKpmymnvLPLINKALALFQWKQdFIEAENLCEKALIIDPECDIavatmaqLLLQQGDVDEALKLFERAA 569
|
.
gi 2055418298 1803 E 1803
Cdd:TIGR00990 570 E 570
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1337-1443 |
8.46e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 8.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1337 MKAKRTKEAVEVLKKALDAISHSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPD---FAESFYQRGLC 1413
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSPLAPDA-------LYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLS 76
|
90 100 110
....*....|....*....|....*....|.
gi 2055418298 1414 KVKL-HKDSSILDFNRAITLNPKHYQAYLSR 1443
Cdd:COG1729 77 YLELgDYDKARATLEELIKKYPDSEAAKEAR 107
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1420-1502 |
1.27e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1420 DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAIS 1499
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
...
gi 2055418298 1500 MDK 1502
Cdd:COG5010 151 TSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
940-1049 |
1.54e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 940 LQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKSTPTDA 1019
Cdd:COG5010 43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122
|
90 100 110
....*....|....*....|....*....|.
gi 2055418298 1020 DIYFRRGEMYEITNKV-LAIDDFSKCIFYDP 1049
Cdd:COG5010 123 NAYSNLAALLLSLGQDdEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1816-1880 |
1.75e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 1.75e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 1816 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1880
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD 68
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1816-1849 |
1.89e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.20 E-value: 1.89e-05
10 20 30
....*....|....*....|....*....|....
gi 2055418298 1816 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND 1849
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1816-1849 |
1.96e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 1.96e-05
10 20 30
....*....|....*....|....*....|....
gi 2055418298 1816 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPND 1849
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1826-1886 |
2.03e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 2.03e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2055418298 1826 YYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASVI 1886
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1550-1644 |
2.21e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1550 LIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEat 1629
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD-- 139
|
90
....*....|....*
gi 2055418298 1630 kQAQKDFLKALHINP 1644
Cdd:COG5010 140 -EAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
936-1058 |
2.60e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 936 AMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKST 1015
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2055418298 1016 PTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKR 1058
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYaEAIAAWQKLLALLPADAPARLLE 125
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1204-1296 |
2.60e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 48.63 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1204 DNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKftiyq 1283
Cdd:PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK----- 90
|
90
....*....|...
gi 2055418298 1284 iAEMDKGLSeLSP 1296
Cdd:PLN03088 91 -AALEKGAS-LAP 101
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1048-1150 |
2.88e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1048 DPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG 1127
Cdd:COG5010 50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129
|
90 100
....*....|....*....|...
gi 2055418298 1128 CLFRKSNPFRALQDYSVSALIND 1150
Cdd:COG5010 130 ALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1370-1403 |
4.36e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 4.36e-05
10 20 30
....*....|....*....|....*....|....
gi 2055418298 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDF 1403
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1764-1850 |
4.55e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 47.86 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1764 FSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDLNKAL 1843
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97
|
....*..
gi 2055418298 1844 SLKPNDA 1850
Cdd:PLN03088 98 SLAPGDS 104
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1208-1317 |
5.83e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1208 EAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKFTIYQIAEM 1287
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|
gi 2055418298 1288 DKGLSElSPMQQALIYSFCENHDKAIEVLD 1317
Cdd:COG4235 81 DPDNPE-ALYLLGLAAFQQGDYAEAIAAWQ 109
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1370-1403 |
6.01e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.64 E-value: 6.01e-05
10 20 30
....*....|....*....|....*....|....
gi 2055418298 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDF 1403
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1019-1139 |
6.51e-05 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 46.81 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1019 ADIYFRRGEMYEitnKV----LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNIDHQNSQARTYRGI 1094
Cdd:PRK11189 64 AQLHYERGVLYD---SLglraLARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2055418298 1095 AYVKWKFYKEATQDFSAAIHLDPNnwlalyyrgclfrksNPFRAL 1139
Cdd:PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPN---------------DPYRAL 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1191-1277 |
6.87e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 6.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1191 AYVNIGLIHLlHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLM 1270
Cdd:COG4235 19 GWLLLGRAYL-RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
....*..
gi 2055418298 1271 MKYYDLA 1277
Cdd:COG4235 98 QGDYAEA 104
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1428-1568 |
8.45e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 8.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1428 RAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTA 1507
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2055418298 1508 FYNRALCYTKIRELQMALTDYGIVLLLDATETvklNTFLNRGLIYVELGQYGFALEDFKQA 1568
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNP---NAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1330-1434 |
8.53e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 8.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1330 ALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 1409
Cdd:COG5010 58 SPSDNLYNKLGDFEESLALLEQALQL------DPN----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127
|
90 100
....*....|....*....|....*.
gi 2055418298 1410 RGLCKVKL-HKDSSILDFNRAITLNP 1434
Cdd:COG5010 128 LAALLLSLgQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1826-1880 |
8.70e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 8.70e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 1826 YYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMAdYNQALDLE 1880
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD 55
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1796-1879 |
1.24e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1796 KKYEEAKEDFANVIESCP---FWAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDalvyNFRAKVRGKIGLIEEAMAD 1872
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDS----PKAPDALLKLGLSYLELGD 82
|
....*..
gi 2055418298 1873 YNQALDL 1879
Cdd:COG1729 83 YDKARAT 89
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1750-1781 |
1.42e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.51 E-value: 1.42e-04
10 20 30
....*....|....*....|....*....|..
gi 2055418298 1750 AYFNAGNIYFHHRQFSQASDYFSKALKFDPEN 1781
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
936-1082 |
1.61e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 936 AMNDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLNYIHKYNKNNTEAYLSKAEIYRGKKDITLAILNYTQAIKST 1015
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2055418298 1016 PTDADIYFRRGEMYEITNKV-LAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDFTALLNID 1082
Cdd:COG5010 85 PNNPELYYNLALLYSRSGDKdEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1200-1288 |
1.66e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1200 LLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLKKAVnELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAKF 1279
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 2055418298 1280 TIYQIAEMD 1288
Cdd:COG3063 81 YLERALELD 89
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1816-1879 |
1.67e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 1.67e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1816 AAVYFNRAHFYYCLKQYELAEEDLNKALSL--------KPNDALVYNFRAKVRGKIGLIEEAMADYNQALDL 1879
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1816-1880 |
1.80e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 1.80e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2055418298 1816 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1880
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1758-1860 |
2.18e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1758 YFHHRQFSQASDYFSKALKFDPENEY---VLMNRAITNTILKKYEEAKEDFANVIESCP---FWAAVYFNRAHFYYCLKQ 1831
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGD 82
|
90 100
....*....|....*....|....*....
gi 2055418298 1832 YELAEEDLNKALSLKPNDALVYNFRAKVR 1860
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAAKEARARLA 111
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
1714-1781 |
2.88e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.51 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1714 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYfHHR---------------QFSQASDYFSKALKFD 1778
Cdd:PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY-HKRgekaeeagdqdeaeaLFDKAAEYWKQAIRLA 150
|
...
gi 2055418298 1779 PEN 1781
Cdd:PRK02603 151 PNN 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1750-1781 |
3.04e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 3.04e-04
10 20 30
....*....|....*....|....*....|..
gi 2055418298 1750 AYFNAGNIYFHHRQFSQASDYFSKALKFDPEN 1781
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1746-1873 |
4.57e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.97 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1746 KYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPENEYvlmnraitntilkkyeeakedfanviescpfwaavYFNRAHF 1825
Cdd:TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVY-----------------------------------YSNRAAC 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2055418298 1826 YYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADY 1873
Cdd:TIGR00990 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1162-1266 |
6.52e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 6.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1162 GIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHKLK 1241
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEA-LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90 100
....*....|....*....|....*
gi 2055418298 1242 KAVNELSRAIHLQPDGIQLYIRRGQ 1266
Cdd:COG4235 103 EAIAAWQKLLALLPADAPARLLEAS 127
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1455-1568 |
1.03e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1455 KAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLL 1534
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....
gi 2055418298 1535 DATEtvkLNTFLNRGLIYVELGQYGFALEDFKQA 1568
Cdd:COG4235 81 DPDN---PEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1331-1402 |
1.08e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 1.08e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1331 LLAKVQMKAKRTKEAVEVLKKALDAISHSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 1402
Cdd:COG1729 35 WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLELGDYDKARATLEELIKKYPD 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1511-1607 |
1.17e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1511 RALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRIN 1590
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYY---NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 2055418298 1591 EFEEAVNFFTWALKINP 1607
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
917-948 |
1.24e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 1.24e-03
10 20 30
....*....|....*....|....*....|..
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEP 948
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1816-1848 |
1.31e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.89 E-value: 1.31e-03
10 20 30
....*....|....*....|....*....|...
gi 2055418298 1816 AAVYFNRAHFYYCLKQYELAEEDLNKALSLKPN 1848
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
994-1082 |
1.32e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 994 IYRGKKDITLAILNYTQAIKSTPTDADIYFRRGEMYEITNKVLAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIE 1073
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 2055418298 1074 DFTALLNID 1082
Cdd:COG3063 81 YLERALELD 89
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1370-1402 |
1.66e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 1.66e-03
10 20 30
....*....|....*....|....*....|...
gi 2055418298 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 1402
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1832-1880 |
2.30e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 2.30e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2055418298 1832 YELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLE 1880
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1542-1605 |
2.76e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 2.76e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1542 LNTFLNRGLIYVELGQYGFALEDFKQA-ALISRTNGSLCHATA-------MCHHRINEFEEAVNFFTWALKI 1605
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKAlEIARRLLGPDHPLTAttllnlgRLYLELGRYEEALELLERALAL 74
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1160-1353 |
2.85e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 42.66 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1160 HRGIVYAHLKLWLLAICDFETVISLERTITLAYVNIGLIhLLHLDNYTEAIWQFSEAIRIDPLCIQSYLCRAETYFKLHK 1239
Cdd:TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM-NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1240 LKKAVNELSRAIHLQPDGIQLYIRRG--QYLL-----MMKYYDLAKFTIYQIAEMDKGLSEL----SPMQQALiysfcEN 1308
Cdd:TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGvtQYKEgsiasSMATFRRCKKNFPEAPDVYNYYGELlldqNKFDEAI-----EK 489
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2055418298 1309 HDKAIEV---LDGISWNRAEMTMCALLAkVQMKaKRTKEAVEVLKKAL 1353
Cdd:TIGR00990 490 FDTAIELekeTKPMYMNVLPLINKALAL-FQWK-QDFIEAENLCEKAL 535
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1404-1511 |
3.66e-03 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 41.41 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1404 AESFYQRGLCKvklhkDS------SILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 1477
Cdd:PRK11189 64 AQLHYERGVLY-----DSlglralARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138
|
90 100 110
....*....|....*....|....*....|....
gi 2055418298 1478 GVLKYYNKTYKLAITDLttaismdknsyTAFYNR 1511
Cdd:PRK11189 139 GIALYYGGRYELAQDDL-----------LAFYQD 161
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1714-1747 |
3.96e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 3.96e-03
10 20 30
....*....|....*....|....*....|....
gi 2055418298 1714 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKY 1747
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
917-948 |
4.38e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 4.38e-03
10 20 30
....*....|....*....|....*....|..
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMNDLQRVILLEP 948
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1388-1443 |
4.57e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 41.31 E-value: 4.57e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2055418298 1388 MAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSR 1443
Cdd:PLN03088 20 LAVDLYTQAIDLDPNNAELYADRAQANIKLgNFTEAVADANKAIELDPSLAKAYLRK 76
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1750-1780 |
5.00e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 5.00e-03
10 20 30
....*....|....*....|....*....|.
gi 2055418298 1750 AYFNAGNIYFHHRQFSQASDYFSKALKFDPE 1780
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1166-1354 |
5.84e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.28 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1166 AHLKLWLLAICDFETVISLERTITLAYVNIGLIHLLHLDNYTEAIWQFSEAIRID-------PLCIQSYLCRAETYFKLH 1238
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERidralalPDLAQLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1239 KLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLAkftiyqIAEMDKGLsELSPmqqaliysfceNHDKAIevldg 1318
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAA------LEDFDRAL-ELDP-----------DYAYAY----- 144
|
170 180 190
....*....|....*....|....*....|....*.
gi 2055418298 1319 isWNRAemtmCALLAKvqmkaKRTKEAVEVLKKALD 1354
Cdd:COG4785 145 --LNRG----IALYYL-----GRYELAIADLEKALE 169
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1066-1185 |
6.05e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1066 ENWFAAIEDFTALLNIDHQNSQARTYRGIAYVKWKFYKEATQDFSAAIHLDPNNWLALYYRG-CLFRKSNPFRALQDYSV 1144
Cdd:COG5010 34 ANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAlLYSRSGDKDEAKEYYEK 113
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2055418298 1145 SALINDGYENLgcFLHRGIVYAHLKLWLLAICDFETVISLE 1185
Cdd:COG5010 114 ALALSPDNPNA--YSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1331-1402 |
6.42e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.37 E-value: 6.42e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1331 LLAKVQMKAKRTKEAVEVLKKALdAISHSDKGPDATAIsADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 1402
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKAL-EIARRLLGPDHPLT-ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
997-1277 |
6.96e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 41.12 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 997 GKKDITLAILNYTQAIKSTPtDADIYFRRGEMY-EITNKVLAIDDFSKCIFYDPKRTDALLKRGLFYCENENWFAAIEDF 1075
Cdd:TIGR00990 139 RNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHnALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1076 TAL-LNIDHQNSQA-----RTYRGIAYVKWKFYKEATQDfsaaiHLDPNNWLALYYRgcLFRKSNPFRALQDYS-VSALI 1148
Cdd:TIGR00990 218 TAScIIDGFRNEQSaqaveRLLKKFAESKAKEILETKPE-----NLPSVTFVGNYLQ--SFRPKPRPAGLEDSNeLDEET 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1149 NDGYENLGcflHRGIVYAHLKLWLLAICDFETVIS---LERTITLAYVNIGLIHLLhLDNYTEAIWQFSEAIRIDPLCIQ 1225
Cdd:TIGR00990 291 GNGQLQLG---LKSPESKADESYEEAARAFEKALDlgkLGEKEAIALNLRGTFKCL-KGKHLEALADLSKSIELDPRVTQ 366
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2055418298 1226 SYLCRAETYFKLHKLKKAVNELSRAIHLQPDGIQLYIRRGQYLLMMKYYDLA 1277
Cdd:TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1370-1408 |
6.97e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 40.40 E-value: 6.97e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2055418298 1370 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFY 1408
Cdd:TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
917-975 |
8.22e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 8.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2055418298 917 AFAYCRRGAIYRKLGKLQSAMnDLQRVILLEPLFLNAYWHRHLIYLFQDKINEALDDLN 975
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1450-1532 |
8.88e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2055418298 1450 KGRYSKAILNCNKAIKIYPESV---RAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSY---TAFYNRALCYTKIRELQM 1523
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
....*....
gi 2055418298 1524 ALTDYGIVL 1532
Cdd:COG1729 86 ARATLEELI 94
|
|
| |
