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Conserved domains on  [gi|815890853|ref|NP_001295023|]
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transcription factor GATA-4 isoform 3 [Homo sapiens]

Protein Classification

GATA-type transcription factor( domain architecture ID 10078896)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

CATH:  3.30.50.10
Gene Ontology:  GO:0003700|GO:0006357|GO:0008270|GO:0043565
PubMed:  31574210
SCOP:  4003617

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 64-115 2.93e-20

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 80.88  E-value: 2.93e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 815890853  64 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 115
Cdd:cd00202    1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 10-60 9.23e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


:

Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 71.63  E-value: 9.23e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 815890853  10 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 60
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
 
Name Accession Description Interval E-value
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 64-115 2.93e-20

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 80.88  E-value: 2.93e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 815890853  64 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 115
Cdd:cd00202    1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 10-60 9.23e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 71.63  E-value: 9.23e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 815890853  10 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 60
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
62-109 1.69e-16

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 70.91  E-value: 1.69e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 815890853    62 GLSCANCQTTTTTLWRRNAEGE-PVCNACGLYMKLHGVP-RPLAMRKEGI 109
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 65-99 3.93e-13

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 61.57  E-value: 3.93e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 815890853   65 CANCQTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP 99
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKGLK 36
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
6-53 4.10e-13

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 62.05  E-value: 4.10e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 815890853     6 SEGRECVNCGAMSTPLWRRDGTGH-YLCNACGLYHKMNGINRPLIKPQR 53
Cdd:smart00401   1 GSGRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLKRPLSLKK 49
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 11-43 2.91e-11

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 56.56  E-value: 2.91e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 815890853   11 CVNCGAMSTPLWRRDGTGHY-LCNACGLYHKMNG 43
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKG 34
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
13-129 3.94e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 50.25  E-value: 3.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890853  13 NCGAMSTPLWRR-DGTGHYLCNACGLYHKMNGINRPLikPQRRLSASRRVGLSCANCQTTTTTLWRrnaEGEPVCNACGL 91
Cdd:COG5641  303 LTTSTATPLWRRtSDKSSFSCNASGSALKPPGSKRPL--LPKPDPNSKRSNATCMNCSSTPTNKIL---SPPTTSNSPGA 377

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 815890853  92 YMKLHGVPRPLAMRKEGIQTRKRKPKN---LNKSKTPAAPS 129
Cdd:COG5641  378 QVKLPNQTRSTGATKKKITRRRMNSGKipaLSSSMKNPVPK 418
 
Name Accession Description Interval E-value
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 64-115 2.93e-20

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 80.88  E-value: 2.93e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 815890853  64 SCANCQTTTTTLWRRN-AEGEPVCNACGLYMKLHGVPRPLAMRKEG-IQTRKRK 115
Cdd:cd00202    1 ACSNCGTTTTPLWRRGpSGGSTLCNACGLYWKKHGVMRPLSKRKKDqIKRRNRK 54
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 10-60 9.23e-17

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 71.63  E-value: 9.23e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 815890853  10 ECVNCGAMSTPLWRRDG-TGHYLCNACGLYHKMNGINRPLIKPQRRLSASRR 60
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPsGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRN 52
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
62-109 1.69e-16

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 70.91  E-value: 1.69e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 815890853    62 GLSCANCQTTTTTLWRRNAEGE-PVCNACGLYMKLHGVP-RPLAMRKEGI 109
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLkRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 65-99 3.93e-13

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 61.57  E-value: 3.93e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 815890853   65 CANCQTTTTTLWRRNAEGEP-VCNACGLYMKLHGVP 99
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKGLK 36
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
6-53 4.10e-13

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 62.05  E-value: 4.10e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 815890853     6 SEGRECVNCGAMSTPLWRRDGTGH-YLCNACGLYHKMNGINRPLIKPQR 53
Cdd:smart00401   1 GSGRSCSNCGTTETPLWRRGPSGNkTLCNACGLYYKKHGGLKRPLSLKK 49
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 11-43 2.91e-11

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 56.56  E-value: 2.91e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 815890853   11 CVNCGAMSTPLWRRDGTGHY-LCNACGLYHKMNG 43
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRtLCNACGLYYKKKG 34
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
13-129 3.94e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 50.25  E-value: 3.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890853  13 NCGAMSTPLWRR-DGTGHYLCNACGLYHKMNGINRPLikPQRRLSASRRVGLSCANCQTTTTTLWRrnaEGEPVCNACGL 91
Cdd:COG5641  303 LTTSTATPLWRRtSDKSSFSCNASGSALKPPGSKRPL--LPKPDPNSKRSNATCMNCSSTPTNKIL---SPPTTSNSPGA 377

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 815890853  92 YMKLHGVPRPLAMRKEGIQTRKRKPKN---LNKSKTPAAPS 129
Cdd:COG5641  378 QVKLPNQTRSTGATKKKITRRRMNSGKipaLSSSMKNPVPK 418
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
3-118 4.65e-07

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 49.87  E-value: 4.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890853   3 DDFSEGRECVNCGAMSTPLWRRD-----GTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTT-TTLW 76
Cdd:COG5641  153 DNSNQPHVCSNCKTTSTPLWRRAssessLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGeNANT 232

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 815890853  77 RRNAEGEPVCNACGLYMKLHGvpRPLAMRKEGIQTRKRKPKN 118
Cdd:COG5641  233 ESIGNSSASKLTKSWEERPQG--RQLLSDAGSLSPRSNNPKS 272
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
61-135 1.02e-06

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 48.71  E-value: 1.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815890853  61 VGLSCANCQTTTTTLWRR-----NAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTR-KRKPKNLNKSKtpAAPSGSES 133
Cdd:COG5641  157 QPHVCSNCKTTSTPLWRRassesSLPGNNLCNACGLYLKLHGSPRaPISLKSDSIKSRsSRSSHNNNDSN--GENANTES 234


                 ..
gi 815890853 134 LP 135
Cdd:COG5641  235 IG 236
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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